Query 028044
Match_columns 214
No_of_seqs 238 out of 1554
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zps_A PRA-CH, phosphoribosyl- 100.0 7.5E-59 2.6E-63 377.7 8.0 125 53-197 12-137 (138)
2 1y6x_A Phosphoribosyl-ATP pyro 99.3 2.4E-13 8.4E-18 104.0 0.9 41 172-214 8-49 (93)
3 1yxb_A PRA-PH, phosphoribosyl- 99.3 3.6E-13 1.2E-17 104.0 1.1 41 172-214 4-46 (98)
4 1yvw_A PRA-PH, phosphoribosyl- 99.3 6.7E-13 2.3E-17 105.1 0.8 41 172-214 3-44 (115)
5 2a7w_A PRA-PH, phosphoribosyl- 99.2 8.8E-13 3E-17 104.5 0.7 40 173-214 5-45 (116)
6 1b75_A Protein (50S ribosomal 29.2 30 0.001 25.2 2.3 32 61-94 22-53 (94)
7 1ynx_A Replication factor-A pr 23.1 96 0.0033 22.8 4.2 41 64-105 41-82 (114)
8 1ttz_A Conserved hypothetical 22.2 51 0.0018 23.1 2.4 27 65-94 48-74 (87)
9 2jk9_A SPRY domain-containing 22.1 1.3E+02 0.0045 24.0 5.2 42 95-136 116-171 (212)
10 1nho_A Probable thioredoxin; b 20.9 54 0.0018 20.9 2.1 32 59-94 51-82 (85)
No 1
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=100.00 E-value=7.5e-59 Score=377.71 Aligned_cols=125 Identities=31% Similarity=0.577 Sum_probs=106.9
Q ss_pred hhhccccCCCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeEEEEEeeecCCCCeE
Q 028044 53 LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSI 132 (214)
Q Consensus 53 ~~~~l~~d~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSGn~q~v~~i~~DCD~Dal 132 (214)
+...++||++|||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+|||
T Consensus 12 ~~~~~~~~~~GLipaIvQd~~tg~VLMlayMN~EAl~~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~L 91 (138)
T 1zps_A 12 LNFRHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAV 91 (138)
T ss_dssp SCCCCCSSSCCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEE
T ss_pred hhcccccCCCCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCcCCCcccccccccccccCCCcCCCchhhHHHHHHHHHHHH-HhhcCCCCCCceee
Q 028044 133 IYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQ-RKAASKNGKPSWTK 197 (214)
Q Consensus 133 l~~V~~~G~aCHtg~~SCF~~~~~~~~~~~~~~~~~~~~~~L~~L~~iI~~-Rk~~~peg~~SYTa 197 (214)
|++|+|.|||||||++||||+.+.. .++.+|.+ |+..+|+. ||+.
T Consensus 92 L~~V~q~G~aCHtG~~SCF~~~~~~------------------~~~~~i~~~r~~~dp~~--~Y~~ 137 (138)
T 1zps_A 92 VLKVEQEGGACHTGYRSCFYRSIDG------------------DELKVREDAVKVFDPEE--IYGD 137 (138)
T ss_dssp EEEEEESSCSSTTSBSSSCCEEEET------------------TEEEECTTCCBCCCC--------
T ss_pred EEEEEecCCcccCCCCCcCcccccC------------------CeeEEeccccccCChHH--cccC
Confidence 9999999999999999999987531 12233344 66677765 9975
No 2
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=99.31 E-value=2.4e-13 Score=104.02 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceeeecccCC-hHHHhhhhhcC
Q 028044 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIRYNN 214 (214)
Q Consensus 172 ~~L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G-~kI~kKIGEEA 214 (214)
.+|++|+++|.+|+.++|++ |||++||++| ++|+|||||||
T Consensus 8 ~~l~~L~~~I~~Rk~~~pe~--SYT~~L~~~G~~ki~kKvgEEA 49 (93)
T 1y6x_A 8 KTFEDLFAELGDRARTRPAD--STTVAALDGGVHALGKKLLEEA 49 (93)
T ss_dssp CSHHHHHHHHHHHHHHCCTT--CHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCC--cHHHHHHHCcHHHHHHHHHHHH
Confidence 57999999999999999987 9999999999 99999999996
No 3
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=99.30 E-value=3.6e-13 Score=104.03 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhc-CCCCCCceeeecccCC-hHHHhhhhhcC
Q 028044 172 TTLYSLESTISQRKAA-SKNGKPSWTKRLLLDS-KLLCSKIRYNN 214 (214)
Q Consensus 172 ~~L~~L~~iI~~Rk~~-~peg~~SYTa~L~~~G-~kI~kKIGEEA 214 (214)
.+|++|+++|.+|+.+ +|++ |||++||.+| ++|+|||||||
T Consensus 4 ~~L~~L~~~I~~Rk~~~~pe~--SYT~~L~~kG~~kI~kKvgEEA 46 (98)
T 1yxb_A 4 KTFEELFTELQHKAANGDPAT--SRTAELVDKGVHAIGKKVVEEA 46 (98)
T ss_dssp CCHHHHHHHHHHHTCC----C--CSSCCHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCC--cHHHHHHHCcHHHHHHHHHHHH
Confidence 4699999999999999 8887 9999999999 99999999996
No 4
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=99.26 E-value=6.7e-13 Score=105.09 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceeeecccCC-hHHHhhhhhcC
Q 028044 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIRYNN 214 (214)
Q Consensus 172 ~~L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G-~kI~kKIGEEA 214 (214)
.+|++|+++|.+|+.++|++ |||++||.+| ++|+|||||||
T Consensus 3 ~~L~~L~~~I~~Rk~~~pe~--SYT~~L~~kG~~kI~kKvgEEA 44 (115)
T 1yvw_A 3 NAFKLLYKTIEERKGSPLPE--SYTNYLFSKGEDKILKKIGEEC 44 (115)
T ss_dssp -CHHHHHHHHHHHHHSCCTT--SHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCC--cHHHHHHHCcHHHHHHHHHHHH
Confidence 36999999999999999987 9999999999 99999999996
No 5
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=99.24 E-value=8.8e-13 Score=104.54 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceeeecccCC-hHHHhhhhhcC
Q 028044 173 TLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIRYNN 214 (214)
Q Consensus 173 ~L~~L~~iI~~Rk~~~peg~~SYTa~L~~~G-~kI~kKIGEEA 214 (214)
+|++|+++|.+|+.++|++ |||++||.+| ++|+|||||||
T Consensus 5 ~L~~L~~~I~~Rk~~~pe~--SYT~~L~~kG~~kI~kKvgEEA 45 (116)
T 2a7w_A 5 VLKNIADTLEARREAAPQS--SYVASLFHKGEDAILKKVAEEA 45 (116)
T ss_dssp CHHHHHHHHHHGGGSCTTT--CHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC--cHHHHHHHCCHHHHHHHHHHHH
Confidence 6999999999999999987 9999999999 99999999996
No 6
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=29.18 E-value=30 Score=25.19 Aligned_cols=32 Identities=9% Similarity=-0.068 Sum_probs=22.1
Q ss_pred CCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhc
Q 028044 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTISS 94 (214)
Q Consensus 61 ~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~t 94 (214)
++|+||+|| |..|.==..-.++...|.+.+.+
T Consensus 22 r~G~vPaVv--YG~~~e~~~i~v~~~~~~~~l~~ 53 (94)
T 1b75_A 22 AANKFPAII--YGGKEAPLAIELDHDKVMNMQAK 53 (94)
T ss_dssp TTTBCCEEE--ECSSSCCEEECCBSHHHHHHHTT
T ss_pred HCCCceEEE--ECCCCCCEEEEECHHHHHHHHhc
Confidence 579999999 54442223445788888888854
No 7
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.14 E-value=96 Score=22.81 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=33.4
Q ss_pred eEEEEEEecCCCcEEEEeecCH-HHHHHHHhcCcEEEEeCCCC
Q 028044 64 LAVAIAQNVDTGAILMQGFANR-DALATTISSRKATFYSRSRS 105 (214)
Q Consensus 64 LiPaIvQd~~tg~VLMlaymN~-eAl~~Tl~tg~~~y~SRSR~ 105 (214)
++.+++.| ++|++-...|-+. +.+...|+.|++.|.|+-+-
T Consensus 41 ~~~~~L~D-e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V 82 (114)
T 1ynx_A 41 LFNVNFLD-TSGEIRATAFNDFATKFNEILQEGKVYYVSKAKL 82 (114)
T ss_dssp EEEEEEEE-TTEEEEEEECHHHHHHHHHHSCSSSEEEEESCEE
T ss_pred EEEEEEEC-CCCeEEEEECHHHHHHHHhhcccCcEEEECCcEE
Confidence 78899999 6888888887764 55778899999999998543
No 8
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=22.25 E-value=51 Score=23.09 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcEEEEeecCHHHHHHHHhc
Q 028044 65 AVAIAQNVDTGAILMQGFANRDALATTISS 94 (214)
Q Consensus 65 iPaIvQd~~tg~VLMlaymN~eAl~~Tl~t 94 (214)
||+|+- ..|+++. |..+++.|+..|+.
T Consensus 48 vPtl~~--~~G~~v~-g~~~~~~L~~~l~~ 74 (87)
T 1ttz_A 48 VPVLRD--PMGRELD-WPFDAPRLRAWLDA 74 (87)
T ss_dssp CSEEEC--TTCCEEE-SCCCHHHHHHHHHT
T ss_pred cCeEEE--ECCEEEe-CCCCHHHHHHHHHH
Confidence 899995 4588876 88999999998864
No 9
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=22.09 E-value=1.3e+02 Score=24.04 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=31.0
Q ss_pred CcEEEEeCCCCcceeccCCC-----C---------CeEEEEEeeecCCCCeEEEEE
Q 028044 95 RKATFYSRSRSTLWTKGETS-----Q---------NFINVQDIFLDCDRDSIIYLG 136 (214)
Q Consensus 95 g~~~y~SRSR~~lW~KGetS-----G---------n~q~v~~i~~DCD~Dall~~V 136 (214)
..-|=|...++.+|+.|... . ..-.++.|.+|||...|-|.+
T Consensus 116 ~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ 171 (212)
T 2jk9_A 116 HESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIV 171 (212)
T ss_dssp TTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEE
T ss_pred CCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEE
Confidence 34566677788899877542 1 123689999999999999985
No 10
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=20.87 E-value=54 Score=20.91 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEEecCCCcEEEEeecCHHHHHHHHhc
Q 028044 59 WDNKGLAVAIAQNVDTGAILMQGFANRDALATTISS 94 (214)
Q Consensus 59 ~d~~GLiPaIvQd~~tg~VLMlaymN~eAl~~Tl~t 94 (214)
|+-.| +|+++- .|++...|+++.+.|...|+.
T Consensus 51 ~~v~~-~Pt~~~---~G~~~~~G~~~~~~l~~~l~~ 82 (85)
T 1nho_A 51 YGLMA-VPAIAI---NGVVRFVGAPSREELFEAIND 82 (85)
T ss_dssp TCSSC-SSEEEE---TTTEEEECSSCCHHHHHHHHH
T ss_pred CCcee-eCEEEE---CCEEEEccCCCHHHHHHHHHH
Confidence 33344 699986 688777889999999988764
Done!