RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028044
(214 letters)
>gnl|CDD|215196 PLN02346, PLN02346, histidine biosynthesis bifunctional protein
hisIE.
Length = 271
Score = 305 bits (784), Expect = e-106
Identities = 136/192 (70%), Positives = 156/192 (81%), Gaps = 2/192 (1%)
Query: 22 CRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQG 81
CR + A+ +++ + P L+ KV+ LLDSVKWD+KGLAVAIAQNVDTGAILMQG
Sbjct: 12 CRRDRKISAASKAAAGSKTLAEPALEPKVESLLDSVKWDDKGLAVAIAQNVDTGAILMQG 71
Query: 82 FANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGP 141
FANR+A++ TISSRKATFYSRSRS LWTKGETS NFINV DI+LDCDRDSIIYLG PDGP
Sbjct: 72 FANREAISATISSRKATFYSRSRSGLWTKGETSGNFINVHDIYLDCDRDSIIYLGTPDGP 131
Query: 142 TCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAAS--KNGKPSWTKRL 199
TCHTG+ETCYYTSV DAL++ GN LA+TTLYSLE TI QRK + + GKPSWTKRL
Sbjct: 132 TCHTGAETCYYTSVDDALQNGGPHGNKLALTTLYSLEETIQQRKEEAVPQGGKPSWTKRL 191
Query: 200 LLDSKLLCSKIR 211
L D +LLCSKIR
Sbjct: 192 LQDPELLCSKIR 203
>gnl|CDD|235067 PRK02759, PRK02759, bifunctional phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
protein; Reviewed.
Length = 203
Score = 169 bits (430), Expect = 4e-53
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 13/149 (8%)
Query: 53 LLDSVKWD-NKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKG 111
++ + +D N GL AI Q+ TG +LM G+ NR+AL T+ + + TF+SRS+ LWTKG
Sbjct: 4 QIEELDFDKNDGLIPAIVQDALTGEVLMLGYMNREALEKTLETGEVTFFSRSKQRLWTKG 63
Query: 112 ETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAM 171
ETS N V I LDCD D+++ L +P GP CHTG+ +C+Y
Sbjct: 64 ETSGNTQKVVSIRLDCDNDTLLVLVEPIGPACHTGTRSCFYREK----------KAAPPW 113
Query: 172 TTLYSLESTISQRKAASKNGKPSWTKRLL 200
L LE I++RK A G S+T +L
Sbjct: 114 DFLSQLEQLIAERKNAPPEG--SYTAKLF 140
>gnl|CDD|234598 PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed.
Length = 125
Score = 138 bits (350), Expect = 3e-42
Identities = 45/109 (41%), Positives = 69/109 (63%)
Query: 51 DRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTK 110
++LD +K+D GL AIAQ+ +TG +LM + N +ALA T+ + +A ++SRSR LW K
Sbjct: 1 PKILDRLKFDADGLVPAIAQDAETGEVLMVAWMNEEALAKTLETGRAHYWSRSRQKLWRK 60
Query: 111 GETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL 159
GETS + V ++ LDCD D+++ + G CHTG +C+Y + L
Sbjct: 61 GETSGHVQKVHEVRLDCDGDAVLLKVEQVGAACHTGRRSCFYRKLEGGL 109
>gnl|CDD|223217 COG0139, HisI, Phosphoribosyl-AMP cyclohydrolase [Amino acid
transport and metabolism].
Length = 111
Score = 135 bits (341), Expect = 5e-41
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 53 LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGE 112
LLD + +D GL AI Q+ +TG +LM + N +ALA T+ + +A +YSRSR LWTKGE
Sbjct: 7 LLDELDFDKDGLVPAIVQDAETGEVLMLAYMNEEALAKTLETGEAHYYSRSRQELWTKGE 66
Query: 113 TSQNFINVQDIFLDCDRDSIIYLGKP-DGPTCHTGSETCYYTSVL 156
TS + V +I LDCD D+++ L + GP CHTG+ +C+Y +V
Sbjct: 67 TSGHTQKVVEIRLDCDGDALLLLVEQIGGPACHTGTRSCFYRAVG 111
>gnl|CDD|201829 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase. This enzyme
catalyzes the third step in the histidine biosynthetic
pathway. It requires Zn ions for activity.
Length = 75
Score = 122 bits (309), Expect = 1e-36
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 79 MQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKP 138
M + N++AL T+ + KA ++SRSR LW KGETS N V++I LDCD D+++ +
Sbjct: 1 MLAYMNKEALEKTLETGKAHYFSRSRQRLWHKGETSGNTQKVKEIRLDCDGDALLVKVEQ 60
Query: 139 DGPTCHTGSETCYYT 153
GP CHTG +C+Y
Sbjct: 61 VGPACHTGRRSCFYR 75
>gnl|CDD|212153 cd11546, NTP-PPase_His4, Nucleoside Triphosphate
Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found
in His4-like fungal histidine biosynthesis trifunctional
proteins and their homologs. This family includes
fungal histidine biosynthesis trifunctional proteins and
their homologs from eukaryotes and bacteria. Some family
members contain three domains responsible for
phosphoribosyl-AMP cyclohydrolase (PRAMP-CH),
phosphoribosyl-ATP pyrophosphohydrolase (PRATP-PH), and
histidinol dehydrogenase (Histidinol-DH) activity,
respectively. Some others do not have Histidinol-DH
domain, but have an additional N-terminal TIM phosphate
binding domain. This family corresponds to the domain
for PRATP-PH activity, which shows significant sequence
similarity to Mycobacterium tuberculosis PRATP-PH that
catalyzes the second step in the histidine-biosynthetic
pathway, irreversibly hydrolyzing phosphoribosyl-ATP
(PRATP) to phosphoribosyl-AMP (PRAMP) and pyrophosphate.
Length = 84
Score = 35.3 bits (82), Expect = 0.003
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 173 TLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIR 211
L +LE+T++QRK + G S+T RL D KLL +KI
Sbjct: 1 GLDALEATLTQRKQNAPPG--SYTARLFNDEKLLRAKIM 37
>gnl|CDD|212141 cd11534, NTP-PPase_HisIE_like, Nucleoside Triphosphate
Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found
in Escherichia coli phosphoribosyl-ATP
pyrophosphohydrolase (HisIE or PRATP-PH) and its
homologs. This family includes Escherichia coli
phosphoribosyl-ATP pyrophosphohydrolase, HisIE, and its
homologs from all three kingdoms of life. E. coli HisIE
is encoded by the hisIE gene, which is formed by hisE
gene fused to hisl. HisIE is a bifunctional enzyme
responsible for the second and third steps of the
histidine-biosynthesis pathway. Its N-terminal and
C-terminal domains have phosphoribosyl-AMP
cyclohydrolase (HisI) and phosphoribosyl-ATP
pyrophosphohydrolase (HisE or PRATP-PH) activity,
respectively. This family corresponds to the C-terminal
domain of HisIE and includes many hisE gene encoding
proteins, all of which show significant sequence
similarity to Mycobacterium tuberculosis
phosphoribosyl-ATP pyrophosphohydrolase (HisE or
PRATP-PH). These proteins may be responsible for only
the second step in the histidine-biosynthetic pathway,
irreversibly hydrolyzing phosphoribosyl-ATP (PRATP) to
phosphoribosyl-AMP (PRAMP) and pyrophosphate.
Length = 84
Score = 34.4 bits (80), Expect = 0.006
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 174 LYSLESTISQRKAASKNGKPSWTKRLLLD-SKLLCSKIR 211
L LE+ I RK A + S+T +LL + K+
Sbjct: 1 LEELEAVIEDRKEAPP--EGSYTAKLLEKGLDKILKKVG 37
>gnl|CDD|234143 TIGR03188, histidine_hisI, phosphoribosyl-ATP pyrophosphohydrolase.
This enzyme, phosphoribosyl-ATP pyrophosphohydrolase,
catalyses the second step in the histidine biosynthesis
pathway. It often occurs as a fusion protein. This model
a somewhat narrower scope than pfam01503, as some
paralogs that appear to be functionally distinct are
excluded from this model [Amino acid biosynthesis,
Histidine family].
Length = 84
Score = 33.6 bits (78), Expect = 0.011
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 174 LYSLESTISQRKAASKNGKPSWTKRLLLD-SKLLCSKI 210
L LE+TI++RKAA G S+T RL + K+
Sbjct: 1 LEELEATIAERKAADPEG--SYTARLFAKGLDKILKKV 36
>gnl|CDD|179005 PRK00400, hisE, phosphoribosyl-ATP pyrophosphatase; Validated.
Length = 105
Score = 32.4 bits (75), Expect = 0.036
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 170 AMTTLYSLESTISQRKAASKNGKPSWTKRLL 200
M TL L +TI +RK A G S+T +LL
Sbjct: 1 MMDTLERLAATIEERKGADPEG--SYTAKLL 29
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 30.6 bits (70), Expect = 0.64
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 56 SVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFY-SRSRSTLWTKGETS 114
+G + NV Q RDALA I SR + SR L K
Sbjct: 311 ETGGGGRGEVYDVPLNV------EQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGK 364
Query: 115 QNFINVQDIF 124
I V DI+
Sbjct: 365 NKVIGVLDIY 374
>gnl|CDD|215926 pfam00450, Peptidase_S10, Serine carboxypeptidase.
Length = 415
Score = 29.9 bits (68), Expect = 0.85
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 108 WTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDA-LKDQPVQ 165
+ IN +I+ C +S + L +C G CY S ++ L V+
Sbjct: 231 ASGCNAYNGGINPYNIYTPCCYNSSLSLNPSSTDSC--GGYDCYDESYVEKYLNRPDVR 287
>gnl|CDD|216740 pfam01852, START, START domain.
Length = 205
Score = 27.4 bits (61), Expect = 4.6
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 45 VLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSR 104
+++ +D + +WD + + + +G L A T +S R F R
Sbjct: 58 LVEELLDDMEYRAQWDKDVRSAETLEVISSGGALQYYVAE-LQAPTPLSPRDFVFLRYWR 116
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 27.8 bits (62), Expect = 5.4
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 43 NPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAIL 78
+ LQ + LD + A+ + TG IL
Sbjct: 246 DLRLQKAAEEALDKAVANKAKGGAAVVLDPKTGEIL 281
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 27.2 bits (60), Expect = 9.0
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 149 TCYY--TSVLDALKDQPVQGNNLAMTTLYSLESTISQRKA-----ASKNGKPSWTKRL 199
TC+ TSV+ V G+++A+ L +T++ + N K SW +RL
Sbjct: 417 TCFSIVTSVI-------VHGSSVAVIMLGRYLNTVTLTATPTTRTTNTNTKNSWLQRL 467
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.128 0.371
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,762,484
Number of extensions: 829167
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 16
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)