BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028045
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis
thaliana GN=At4g11060 PE=2 SV=1
Length = 201
Score = 287 bits (734), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 136/214 (63%), Positives = 171/214 (79%), Gaps = 13/214 (6%)
Query: 1 MSSLAARFANLLRVPASSSSHSTSLVLGVQRSSKMWYSSGSFDGKNDDQNMDEVDDVFDD 60
M+SLA R + +LR SS + L + +R SK W+S+G D + V++ F++
Sbjct: 1 MNSLAIRVSKVLR-----SSSISPLAISAERGSKSWFSTGPID--------EGVEEDFEE 47
Query: 61 FVVEKQELQPQGVDPRRGWGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFD 120
V E+ ELQP GVDPR+GWGFRGVH+AIICGKV P+QKILRNG+TVTIF+VGTGG+FD
Sbjct: 48 NVTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFD 107
Query: 121 QRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKN 180
QR+VG+ + PKP QWHRIAVHNE+LGSYAV++L KNSSVYVEGDIE RVYNDSI+ EVK+
Sbjct: 108 QRLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKS 167
Query: 181 IPEICIRRDGTLRLVKSGESISKISFDDLREGLL 214
IPEIC+RRDG +R++K GESISKISFD+L+EGL+
Sbjct: 168 IPEICVRRDGKIRMIKYGESISKISFDELKEGLI 201
>sp|Q89A53|SSB_BUCBP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ssb PE=3 SV=1
Length = 166
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G + P + ++NG VT ++ T + + G ++ + +WHRI
Sbjct: 4 RGINKVILIGYLGQDPDVRYMQNGSAVTNITLATSETWKDKNNG--EIKEKTEWHRIVFF 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 198
N EI G Y L K S VY+EG ++ R + D NG + I EI + GT++++ S
Sbjct: 62 NKLAEIAGEY----LKKGSQVYIEGSLQTRKWKDQ-NGIERYITEIIVSVGGTMQMLGSR 116
Query: 199 ESIS 202
S S
Sbjct: 117 NSSS 120
>sp|P28045|SSBR_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G++ + P + + NG V V T + + G ++ + +WHR+ +
Sbjct: 4 RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTG--EMREQTEWHRVVLF 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 197
E+ G Y L K + VY+EG + R ++D NG + I EI ++ GT++++ S
Sbjct: 62 GKLAEVAGEY----LRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLGS 114
>sp|P18022|SSBP_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=3
Length = 175
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G++ + P + + NG V V T + + G ++ + +WHR+ +
Sbjct: 4 RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTG--EMREQTEWHRVVLF 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 197
E+ G Y L K + VY+EG + R ++D NG + I EI ++ GT++++ S
Sbjct: 62 GKLAEVAGEY----LRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLGS 114
>sp|P28043|SSB2_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 179
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G++ P + + NG V V T + + G + + +WHR+ +
Sbjct: 4 RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGK--MREQTEWHRVVLF 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
E+ G Y L K + VY+EG + R + D NG + + EI ++ GT++++
Sbjct: 62 GKLAEVAGEY----LRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQML 112
>sp|Q8D254|SSB_WIGBR Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia
brevipalpis GN=ssb PE=3 SV=2
Length = 163
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G + P + + NG +T S+ T + + G + + +WHR+ +
Sbjct: 4 RGINKVILIGNLGQDPEVRYIPNGNAITNLSLATSENWRDKNTG--ESKEKTEWHRVILF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG+++ R + D NG+ + I EI + +G ++++
Sbjct: 62 GK-LAEVAGEYLKKGSQVYIEGNLQTRKWQDQ-NGQDRYITEIVVGINGCMQML 113
>sp|P28044|SSB7_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G++ P + + NG V V T + + G ++ + +WHR+ +
Sbjct: 4 RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTG--EIREQTEWHRVVLF 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
E+ G Y L K + VY+EG + R + D NG + + EI ++ GT++++
Sbjct: 62 GKLAEVAGEY----LRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQML 112
>sp|Q9RHF4|SSB2_SALTI Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2
PE=3 SV=1
Length = 178
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
+GV+K I+ G + P + + NG V S+ T + + G K + +WHR+ ++
Sbjct: 4 KGVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKK--ERTEWHRVVLY 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG + R + D +G K E+ + + GT++++
Sbjct: 62 GK-LAEIASEYLRKGSQVYIEGALRTRKWTDQ-SGVEKYTTEVVVSQSGTMQML 113
>sp|P18310|SSBF_ECOLI Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli (strain K12) GN=ssbF PE=1 SV=3
Length = 179
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G++ P + + NG V V T + + G ++ + +WHR+ +
Sbjct: 4 RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTG--EMREQTEWHRVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K + VY+EG + R + D NG + + EI ++ GT++++
Sbjct: 62 GK-LAEVAGECLRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQML 112
>sp|Q9ZAQ8|SSB_RHOS4 Single-stranded DNA-binding protein OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=ssb
PE=3 SV=2
Length = 173
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
V+K II G + P + +NG V + T + R G + + +WH +A+ +E
Sbjct: 5 VNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGER--KERTEWHSVAIFDE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187
L A + L K S+VY+EG +E R + D +G+ + E+ +R
Sbjct: 63 NLARVAEQYLRKGSTVYIEGQLETRKWQDQ-SGQDRYSTEVVLR 105
>sp|Q889U1|SSB_PSESM Single-stranded DNA-binding protein OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=ssb PE=1 SV=1
Length = 189
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G P + L NG VT S+ T + + G K + +WHR+++
Sbjct: 3 RGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKV--EKTEWHRVSMF 60
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
EI G Y L K S VY+EG ++ R + +G + EI + GT++L+
Sbjct: 61 GKVAEIAGEY----LRKGSQVYIEGKLQTREWEK--DGIKRYTTEIVVDMQGTMQLL 111
>sp|Q93GP7|SSB2_SALTY Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ssb2 PE=3 SV=1
Length = 172
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + R+ ++ + +WHR+ V
Sbjct: 4 RGVNKVILVGHIGQDPEVRYMPNGGAVANLTLATSETW--RVRQDGEMREHTEWHRVVVF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K + VY+EG + R + D +G+ K E+ + GT++++
Sbjct: 62 GK-LAEIASEYLRKGAQVYIEGQLRTRKWTDQ-SGQDKYTTEVIVNVGGTMQML 113
>sp|P25762|SSB_SERMA Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb
PE=1 SV=2
Length = 176
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + + G + + +WHR+ +
Sbjct: 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQK--EKTEWHRVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG ++ R + D +G+ + EI + GT++++
Sbjct: 62 GK-LAEVAGEYLRKGSQVYIEGSLQTRKWQDQ-SGQDRYTTEIVVNVGGTMQML 113
>sp|P0AGE3|SSB_SHIFL Single-stranded DNA-binding protein OS=Shigella flexneri GN=ssb
PE=3 SV=2
Length = 178
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + + G ++ + +WHR+ +
Sbjct: 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATG--EMKEQTEWHRVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG + R + D +G+ + E+ + GT++++
Sbjct: 62 GK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQML 113
>sp|P0AGE0|SSB_ECOLI Single-stranded DNA-binding protein OS=Escherichia coli (strain
K12) GN=ssb PE=1 SV=2
Length = 178
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + + G ++ + +WHR+ +
Sbjct: 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATG--EMKEQTEWHRVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG + R + D +G+ + E+ + GT++++
Sbjct: 62 GK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQML 113
>sp|P0AGE1|SSB_ECOL6 Single-stranded DNA-binding protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ssb PE=3 SV=2
Length = 178
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + + G ++ + +WHR+ +
Sbjct: 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATG--EMKEQTEWHRVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG + R + D +G+ + E+ + GT++++
Sbjct: 62 GK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQML 113
>sp|P0AGE2|SSB_ECO57 Single-stranded DNA-binding protein OS=Escherichia coli O157:H7
GN=ssb PE=3 SV=2
Length = 178
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + + G ++ + +WHR+ +
Sbjct: 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATG--EMKEQTEWHRVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG + R + D +G+ + E+ + GT++++
Sbjct: 62 GK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQML 113
>sp|Q1RK72|SSB_RICBR Single-stranded DNA-binding protein OS=Rickettsia bellii (strain
RML369-C) GN=ssb PE=3 SV=1
Length = 150
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
++K + G + P + GK + S+ T ++ R+ G K + +WHR+ + NE
Sbjct: 5 LNKVTLIGNLGRDPEIRTTGEGKEIANLSLATTDIWKDRVTGEK--KEKTEWHRVVIFNE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKSGESIS 202
L S + K S +Y+EG ++ R +NDS +G K EI ++ + L L+ S S S
Sbjct: 63 GLVSVVKNYVKKGSKLYIEGSLQTRKWNDS-SGVEKYTTEIVLQNFNSQLILLDSKNSTS 121
>sp|P57610|SSB_BUCAI Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ssb PE=3 SV=1
Length = 171
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + + G + +WHRI +
Sbjct: 4 RGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGEN--KEKTEWHRIVLF 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
EI G Y L K S VY+EG ++ R + D NG + EI + GT++++
Sbjct: 62 GKLAEIAGEY----LRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEIIVNIGGTMQML 113
>sp|P44409|SSB_HAEIN Single-stranded DNA-binding protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ssb PE=3
SV=1
Length = 168
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN 142
G++K II G + + P + + NG V SV T ++ R G + + +WHRI +
Sbjct: 3 GINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGER--REVTEWHRIVFYR 60
Query: 143 ---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEI 184
EI G Y L K S VYVEG ++ R + D NG+ + EI
Sbjct: 61 RQAEICGEY----LRKGSQVYVEGRLKTRKWQDQ-NGQDRYTTEI 100
>sp|P40947|SSB_PSEAE Single-stranded DNA-binding protein OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=ssb PE=1 SV=3
Length = 165
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G V P + + NG VT ++ T + + G + + +WHR+
Sbjct: 3 RGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQ--ERTEWHRVVFF 60
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
EI G Y L K S VYVEG + R + +G+ + EI + +G ++L+
Sbjct: 61 GRLAEIAGEY----LRKGSQVYVEGSLRTRKWQGQ-DGQDRYTTEIVVDINGNMQLL 112
>sp|Q8ZJ06|SSB_YERPE Single-stranded DNA-binding protein OS=Yersinia pestis GN=ssb PE=3
SV=1
Length = 182
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + + G + + +WHR+ +
Sbjct: 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQK--EKTEWHRVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG ++ R + D +G+ + E+ + GT++++
Sbjct: 62 GK-LAEVAGEYLRKGSQVYIEGALQTRKWQDQ-SGQERYTTEVVVNVGGTMQML 113
>sp|Q83EP4|SSB_COXBU Single-stranded DNA-binding protein OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=ssb PE=1 SV=1
Length = 158
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + NG V ++ T + + G +L + +WHRIA
Sbjct: 3 RGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTG--ELQERTEWHRIAFF 60
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEIC 185
N EI+G Y L K S +Y+EG + R + D NG + EI
Sbjct: 61 NRLAEIVGEY----LRKGSKIYIEGSLRTRKWQDK-NGVDRYTTEII 102
>sp|Q8KB47|SSB1_CHLTE Single-stranded DNA-binding protein 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=ssb1 PE=3 SV=1
Length = 162
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K ++ G + + P ++ +G++V F++ T F S +L + +WHRI
Sbjct: 3 RGLNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKD---SSGNLQERTEWHRIVAW 59
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 201
+ L + L K VY+EG ++ R ++D+ G+ K EI L SG
Sbjct: 60 GK-LADICSQYLKKGRQVYIEGRLQTRSWDDNKTGDKKYATEIVCTDMQMLGAKDSGGGT 118
Query: 202 SKISFDDLR 210
S S+ R
Sbjct: 119 SDASYSQNR 127
>sp|P59930|SSB_HAEDU Single-stranded DNA-binding protein OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=ssb PE=3 SV=1
Length = 176
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN 142
G++K II G + + P + + NG+ V SV T + + G + + +WHRI +
Sbjct: 3 GINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERR--EVTEWHRIVFYR 60
Query: 143 ---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEI 184
E+ G Y L K S VYVEG ++ R + D NG+ + EI
Sbjct: 61 RQAEVAGQY----LRKGSQVYVEGRLKTRKWQDQ-NGQDRYTTEI 100
>sp|Q8VMM4|SSBW_PSEPU Single-stranded DNA-binding protein OS=Pseudomonas putida GN=ssb
PE=3 SV=1
Length = 180
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G P + L NG VT S+ T + + G K + +WHR+++
Sbjct: 3 RGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQK--VERTEWHRVSLF 60
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
EI G Y L K S Y+EG ++ R + +G + EI + GT++L+
Sbjct: 61 GKVAEIAGEY----LRKGSQCYIEGKLQTREWEK--DGIKRYTTEIIVDMQGTMQLL 111
>sp|Q8K933|SSB_BUCAP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ssb PE=3 SV=1
Length = 162
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V ++ T + + G + +WHRI +
Sbjct: 4 RGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGEN--KEKTEWHRIVLF 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
EI G Y L K S VY+EG ++ R + D NG + E+ + GT++++
Sbjct: 62 GKLAEIAGEY----LRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEVIVNIGGTMQML 113
>sp|Q9XJG4|SSB_BPP1 Single-stranded DNA-binding protein OS=Enterobacteria phage P1
GN=ssb PE=3 SV=1
Length = 162
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V S+ T + + G + + +WH++ +
Sbjct: 4 RGVNKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQK--EQTEWHKVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
+ L A + L K S VY+EG ++ R + D G + EI + + GT++++
Sbjct: 62 GK-LAEIASEYLRKGSQVYIEGKLKTRKWTDDA-GVERYTTEIIVSQGGTMQMI 113
>sp|P28046|SSB_PROMI Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb
PE=1 SV=2
Length = 174
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + +G V ++ T + + G ++ + +WHR+ +
Sbjct: 4 RGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTG--EMKEKTEWHRVVIF 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
EI G Y L K S VY+EG ++ R + D +G+ + E+ + GT++++
Sbjct: 62 GKLAEIAGEY----LRKGSQVYIEGQLQTRKWQDQ-SGQDRYSTEVVVNIGGTMQML 113
>sp|Q92G30|SSB_RICCN Single-stranded DNA-binding protein OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=ssb PE=3 SV=1
Length = 152
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
++K I+ G V P + GK + S+ T + RI + + +WHR+ + +E
Sbjct: 5 LNKVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSER--KERTEWHRVVIFSE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187
L S + + K S +Y+EG ++ R +ND+ +G+ K E+ ++
Sbjct: 63 GLVSVVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQ 105
>sp|Q88QK5|SSB_PSEPK Single-stranded DNA-binding protein OS=Pseudomonas putida (strain
KT2440) GN=ssb PE=3 SV=1
Length = 181
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G P + L NG VT S+ T + + G K + +WHR+++
Sbjct: 3 RGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQK--VERTEWHRVSLF 60
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
EI G Y L K S Y+EG ++ R + +G + EI + +GT++L+
Sbjct: 61 GKVAEIAGEY----LRKGSQCYIEGKLQTREWEK--DGIKRYTTEIIVDINGTMQLL 111
>sp|Q9A894|SSB_CAUCR Single-stranded DNA-binding protein OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=ssb PE=3 SV=1
Length = 167
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
V+K I+ G + P + L +G V + T + R G + + +WHR+ + N+
Sbjct: 5 VNKVILVGNLGADPEIRSLGSGDRVANLRIATSETWRDRSSGER--KEKTEWHRVVIFND 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRR 188
L A + L K S+VY+EG ++ R + D+ G+ K EI +++
Sbjct: 63 NLVKVAEQYLRKGSTVYIEGALQTRKWTDN-TGQEKYSTEIVLQK 106
>sp|Q8YHC2|SSB_BRUME Single-stranded DNA-binding protein OS=Brucella melitensis biotype
1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ssb PE=3
SV=1
Length = 168
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
V+K I+ G + P + L +G V + T + R G + +WH + + NE
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGER--KDRTEWHSVVIFNE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKS 197
L A + L K + VY+EG ++ R + D NG + EI +++ G L+++ S
Sbjct: 63 NLAKVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSTEIVLQKFRGELQMLDS 116
>sp|Q8G0J1|SSB_BRUSU Single-stranded DNA-binding protein OS=Brucella suis biovar 1
(strain 1330) GN=ssb PE=3 SV=1
Length = 168
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
V+K I+ G + P + L +G V + T + R G + +WH + + NE
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGER--KDRTEWHSVVIFNE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKS 197
L A + L K + VY+EG ++ R + D NG + EI +++ G L+++ S
Sbjct: 63 NLAKVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSTEIVLQKFRGELQMLDS 116
>sp|P0C118|SSB_BRUAB Single-stranded DNA-binding protein OS=Brucella abortus biovar 1
(strain 9-941) GN=ssb PE=3 SV=1
Length = 168
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
V+K I+ G + P + L +G V + T + R G + +WH + + NE
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGER--KDRTEWHSVVIFNE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKS 197
L A + L K + VY+EG ++ R + D NG + EI +++ G L+++ S
Sbjct: 63 NLAKVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSKEIVLQKFRGELQMLDS 116
>sp|Q2YPX7|SSB_BRUA2 Single-stranded DNA-binding protein OS=Brucella abortus (strain
2308) GN=ssb PE=3 SV=1
Length = 168
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
V+K I+ G + P + L +G V + T + R G + +WH + + NE
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGER--KDRTEWHSVVIFNE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKS 197
L A + L K + VY+EG ++ R + D NG + EI +++ G L+++ S
Sbjct: 63 NLAKVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSKEIVLQKFRGELQMLDS 116
>sp|Q4UJW3|SSB_RICFE Single-stranded DNA-binding protein OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ssb PE=3 SV=1
Length = 152
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
++K I+ G V P + GK + S+ T + RI + + +WHR+ + +E
Sbjct: 5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSER--KERTEWHRVVIFSE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187
L S + + K S +Y+EG ++ R +ND+ +G+ K E+ ++
Sbjct: 63 GLVSVVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQ 105
>sp|Q8EA81|SSB_SHEON Single-stranded DNA-binding protein OS=Shewanella oneidensis
(strain MR-1) GN=ssb PE=3 SV=1
Length = 238
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + NG V +V T + + ++ +WHR+ +
Sbjct: 4 RGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQER---TEWHRVVLF 60
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 197
EI G Y L K S VY+EG ++ R + D +G+ + E+ I + G+++++ S
Sbjct: 61 GKLAEITGEY----LRKGSQVYLEGKLQTRKWKDQ-SGQDRYSTEVVIDQSGSMQMLGS 114
>sp|Q9ZCC2|SSB_RICPR Single-stranded DNA-binding protein OS=Rickettsia prowazekii
(strain Madrid E) GN=ssb PE=3 SV=1
Length = 152
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
++K I+ G V P + GK + S+ T + RI + + +WHR+ + +E
Sbjct: 5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSER--KERTEWHRVVIFSE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187
L S + + K S +Y+EG ++ R +ND+ +G+ K E+ ++
Sbjct: 63 GLVSIVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQ 105
>sp|Q68Y11|SSB_RICTY Single-stranded DNA-binding protein OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ssb PE=3 SV=1
Length = 152
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
++K I+ G V P + GK + S+ T + RI + + +WHR+ + +E
Sbjct: 5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSER--KERTEWHRVVIFSE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187
L S + + K S +Y+EG ++ R +ND+ +G+ K E+ ++
Sbjct: 63 GLVSIVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQ 105
>sp|Q8DCJ0|SSB_VIBVU Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain
CMCP6) GN=ssb PE=3 SV=1
Length = 179
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G + + P + + +G V +V T + + G + +WHR+ ++
Sbjct: 4 RGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPR--EKTEWHRVTLY 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187
+ L A + L K S VY+EG ++ R + D NG+ + E+ ++
Sbjct: 62 GK-LAEVAGEYLRKGSQVYIEGQLQTRKWQDQ-NGQDRYSTEVVVQ 105
>sp|Q95KK4|SSBP_RABIT Single-stranded DNA-binding protein, mitochondrial OS=Oryctolagus
cuniculus GN=SSBP1 PE=2 SV=1
Length = 148
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLF---DQRIVGSKDLPKPVQWHRI 138
R +++ + G+V PV + + VTIFS+ T ++ D D+ + WHRI
Sbjct: 28 RSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDNETYQMGDVSQKTTWHRI 87
Query: 139 AVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSIN 175
+V L A + + K S +YVEG ++ Y D N
Sbjct: 88 SVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYMDKNN 124
>sp|Q5RDQ0|SSBP_PONAB Single-stranded DNA-binding protein, mitochondrial OS=Pongo abelii
GN=SSBP1 PE=2 SV=1
Length = 148
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLF---DQRIVGSKDLPKPVQWHRI 138
R +++ + G+V PV + + VTIFS+ T ++ D + D+ + WHRI
Sbjct: 28 RSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDISQKTTWHRI 87
Query: 139 AVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSIN 175
+V L A + + K S +Y+EG I+ Y D N
Sbjct: 88 SVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNN 124
>sp|Q04837|SSBP_HUMAN Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens
GN=SSBP1 PE=1 SV=1
Length = 148
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLF---DQRIVGSKDLPKPVQWHRI 138
R +++ + G+V PV + + VTIFS+ T ++ D + D+ + WHRI
Sbjct: 28 RSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRI 87
Query: 139 AVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSIN 175
+V L A + + K S +Y+EG I+ Y D N
Sbjct: 88 SVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNN 124
>sp|Q9CJP4|SSB_PASMU Single-stranded DNA-binding protein OS=Pasteurella multocida
(strain Pm70) GN=ssb PE=3 SV=1
Length = 166
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTG-GLFDQRIVGSKDLPKPVQWHRIAVH 141
GV+K II G + + P + + NG+ V SV T D+ +++ +WHRI +
Sbjct: 3 GVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREV---TEWHRIVFY 59
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEI 184
E+ G Y L K S VYVEG ++ R + D NG+ + EI
Sbjct: 60 RRQAEVAGEY----LRKGSKVYVEGRLKTRKWQDQ-NGQDRYTTEI 100
>sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ssb PE=3
SV=1
Length = 177
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G + P + + +G V ++ T + + G + + +WHR+ ++
Sbjct: 4 RGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQK--EKTEWHRVTLY 61
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR-RDGTLRLV 195
E+ G Y L K S VY+EG ++ R + D +G+ + E+ ++ +G ++++
Sbjct: 62 GKLAEVAGEY----LRKGSQVYIEGQLQTRKWQDQ-SGQDRYSTEVVVQGYNGIMQML 114
>sp|Q847G1|SSBD_PSEPU Single-stranded DNA-binding protein OS=Pseudomonas putida GN=ssb
PE=3 SV=1
Length = 161
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RGV+K I+ G P + L NG VT S+ T + + G K + + HR+++
Sbjct: 3 RGVNKVILIGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQK--VEKTERHRVSLF 60
Query: 142 N---EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195
EI G Y L K S VY+EG ++ R + +G + EI + GT++L+
Sbjct: 61 GKVAEIAGEY----LRKGSQVYIEGKLQTREWEK--DGIKRYTTEIVVDMQGTMQLL 111
>sp|Q87LA3|SSB_VIBPA Single-stranded DNA-binding protein OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=ssb PE=3 SV=1
Length = 176
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVH 141
RG++K I+ G + + P + + NG V ++ T + + G + + +WHR+ +
Sbjct: 4 RGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQR--EKTEWHRVVLF 61
Query: 142 NEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIR 187
+ L A + L K S VYVEG ++ R + D +G+ + E+ ++
Sbjct: 62 GK-LAEVAGEYLRKGSQVYVEGQLQTRKWQDQ-SGQDRYSTEVVVQ 105
>sp|Q89L50|SSB_BRAJA Single-stranded DNA-binding protein OS=Bradyrhizobium japonicum
(strain USDA 110) GN=ssb PE=3 SV=1
Length = 164
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNE 143
V+K I+ G + P + ++G+ + S+ T + + G + + +WHR+ + NE
Sbjct: 5 VNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERK--EKTEWHRVVIFNE 62
Query: 144 ILGSYAVKQLVKNSSVYVEGDIEIRVYND 172
L A + L K + VY+EG ++ R + D
Sbjct: 63 GLCKVAEQYLKKGAKVYIEGALQTRKWTD 91
>sp|Q9CYR0|SSBP_MOUSE Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus
GN=Ssbp1 PE=2 SV=1
Length = 152
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 54 VDDVFDDFVVEKQELQPQGVDPRRGWGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSV 113
V VF FV + E+ V R +++ + G+V PV + + VTIFS+
Sbjct: 6 VLQVFRQFVRHESEVASSLVLER------SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSL 59
Query: 114 GTGGLF---DQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVY 170
T ++ D + D+ + WHRI+V L A + + K + ++VEG ++ Y
Sbjct: 60 ATNEMWRSGDSEVYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEY 119
Query: 171 NDSIN 175
D N
Sbjct: 120 MDKNN 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,722,772
Number of Sequences: 539616
Number of extensions: 3783403
Number of successful extensions: 9157
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 9063
Number of HSP's gapped (non-prelim): 130
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)