Query 028045
Match_columns 214
No_of_seqs 140 out of 1042
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulp_A Single-strand binding p 100.0 2.2E-31 7.6E-36 209.2 14.6 116 82-200 4-122 (124)
2 3tqy_A Single-stranded DNA-bin 100.0 6.9E-31 2.4E-35 215.0 15.9 115 80-201 3-118 (158)
3 1qvc_A Single stranded DNA bin 100.0 1.5E-30 5.1E-35 210.0 15.4 115 81-202 2-119 (145)
4 3pgz_A Single-stranded DNA-bin 100.0 1E-30 3.4E-35 220.6 15.0 120 81-203 22-143 (193)
5 3lgj_A Single-stranded DNA-bin 100.0 1E-30 3.4E-35 216.4 14.2 119 82-203 21-140 (169)
6 3vdy_A SSB, single-stranded DN 100.0 1.6E-30 5.4E-35 201.9 14.4 110 82-201 3-112 (116)
7 3ull_A DNA binding protein; DN 100.0 5.5E-31 1.9E-35 209.1 11.3 115 80-200 9-129 (132)
8 1z9f_A Single-strand binding p 100.0 1.2E-30 4.2E-35 212.7 12.5 115 78-201 10-125 (153)
9 2vw9_A Single-stranded DNA bin 100.0 3.4E-30 1.2E-34 205.5 14.8 111 83-201 1-111 (134)
10 3k7u_C MP18 RNA editing comple 100.0 1.5E-30 5.1E-35 211.4 11.8 122 81-208 3-127 (148)
11 4dam_A Single-stranded DNA-bin 100.0 2.5E-29 8.4E-34 199.5 14.0 106 82-195 13-118 (128)
12 3koj_A Uncharacterized protein 100.0 1.5E-29 5.1E-34 195.8 12.2 98 82-193 9-107 (108)
13 1eqq_A Single stranded DNA bin 100.0 3.4E-30 1.1E-34 214.8 8.8 113 81-200 3-118 (178)
14 3afp_A Single-stranded DNA-bin 100.0 1.4E-29 4.6E-34 209.2 12.1 115 81-198 1-116 (168)
15 3k81_C MP18 RNA editing comple 100.0 2.5E-29 8.4E-34 207.2 10.7 124 82-211 20-146 (164)
16 3eiv_A Single-stranded DNA-bin 100.0 4.1E-28 1.4E-32 205.5 14.6 108 81-194 1-108 (199)
17 1v1q_A Primosomal replication 99.9 1E-27 3.5E-32 191.9 10.9 108 80-200 15-122 (134)
18 1se8_A Single-strand binding p 99.9 6.1E-27 2.1E-31 209.0 14.6 110 83-200 4-114 (301)
19 2fxq_A Single-strand binding p 99.9 1.1E-26 3.8E-31 202.9 13.9 119 72-202 115-234 (264)
20 2fxq_A Single-strand binding p 99.9 1.2E-26 4.1E-31 202.7 12.0 108 83-199 4-111 (264)
21 4dni_A Fusion protein of RNA-e 99.9 2.6E-26 8.8E-31 201.1 14.0 109 81-196 143-255 (257)
22 1se8_A Single-strand binding p 99.9 4.3E-26 1.5E-30 203.5 13.9 120 73-201 117-237 (301)
23 1txy_A Primosomal replication 99.9 2.6E-26 9.1E-31 175.5 9.6 103 83-198 1-103 (104)
24 3k8a_A Putative primosomal rep 99.9 9.1E-25 3.1E-29 167.5 9.3 101 79-196 2-102 (103)
25 4gs3_A Single-stranded DNA-bin 99.9 1.4E-24 4.9E-29 167.6 10.4 95 84-196 11-106 (107)
26 3fhw_A Primosomal replication 99.9 1.9E-24 6.5E-29 168.8 10.9 102 84-201 1-102 (115)
27 3en2_A Probable primosomal rep 99.9 1.1E-21 3.8E-26 150.0 7.8 84 84-173 2-85 (101)
28 3stb_C RNA-editing complex pro 99.8 3.8E-20 1.3E-24 149.9 14.1 96 82-186 42-137 (148)
29 4dni_A Fusion protein of RNA-e 99.8 5.7E-20 1.9E-24 160.9 9.8 94 82-187 28-122 (257)
30 4dka_C RNA-editing complex pro 97.3 0.0052 1.8E-07 46.7 11.8 94 86-194 5-103 (105)
31 3e0e_A Replication protein A; 96.5 0.0098 3.4E-07 43.8 7.8 79 85-193 12-94 (97)
32 2k75_A Uncharacterized protein 96.5 0.026 8.7E-07 42.3 9.8 82 82-197 11-95 (106)
33 2k50_A Replication factor A re 96.4 0.011 3.8E-07 44.2 7.4 84 86-195 18-105 (115)
34 1o7i_A SSB, SSO2364, single st 96.3 0.019 6.6E-07 43.5 8.5 94 84-211 12-109 (119)
35 3dm3_A Replication factor A; p 96.1 0.021 7.2E-07 42.9 7.6 83 85-194 15-99 (105)
36 1ynx_A Replication factor-A pr 95.6 0.04 1.4E-06 41.6 7.3 92 82-195 12-109 (114)
37 1jmc_A Protein (replication pr 94.0 0.22 7.4E-06 41.6 8.4 98 82-198 16-116 (246)
38 3kdf_D Replication protein A 3 92.5 0.9 3.1E-05 34.7 9.1 79 84-197 31-111 (132)
39 4gop_B Putative uncharacterize 92.3 0.62 2.1E-05 35.8 8.0 78 83-196 35-115 (136)
40 3f2b_A DNA-directed DNA polyme 91.5 2.1 7.3E-05 43.7 13.0 74 82-172 15-89 (1041)
41 4gop_C Putative uncharacterize 90.0 1.9 6.6E-05 39.2 10.2 97 82-197 11-110 (444)
42 2pi2_A Replication protein A 3 86.6 2.9 9.9E-05 35.8 8.6 79 83-196 70-150 (270)
43 2hql_A Hypothetical protein Mg 84.7 10 0.00035 28.1 11.8 88 82-184 6-93 (110)
44 2kbn_A Conserved protein; nucl 84.1 7.7 0.00026 28.6 8.9 80 84-196 15-95 (109)
45 3au7_A TIAS, putative uncharac 79.1 10 0.00035 34.7 9.4 76 70-166 265-347 (402)
46 1wjj_A Hypothetical protein F2 77.4 6.4 0.00022 31.0 6.6 85 83-197 25-122 (145)
47 2hpi_A DNA polymerase III alph 76.0 4.5 0.00015 42.0 6.7 64 86-167 1044-1107(1220)
48 3kf6_A Protein STN1; OB fold, 73.5 21 0.00071 28.4 8.8 82 82-197 45-128 (159)
49 2vl6_A SSO MCM N-TER, minichro 72.5 8.1 0.00028 32.6 6.6 56 133-197 210-267 (268)
50 1ltl_A DNA replication initiat 71.7 4.1 0.00014 34.9 4.5 55 133-199 197-251 (279)
51 2hbp_A Cytoskeleton assembly c 56.9 14 0.00048 25.7 4.1 35 164-199 2-36 (68)
52 4hik_A Protection of telomeres 51.6 11 0.00036 29.7 3.1 27 135-162 66-92 (143)
53 1nnx_A Protein YGIW; structura 50.5 41 0.0014 25.2 6.1 75 81-196 34-108 (109)
54 1jmc_A Protein (replication pr 48.5 39 0.0013 27.6 6.3 68 86-170 140-210 (246)
55 3i7f_A Aspartyl-tRNA synthetas 43.8 2.1E+02 0.0073 26.9 11.5 116 55-198 25-153 (548)
56 3ebe_A Protein MCM10 homolog; 32.8 43 0.0015 27.5 4.1 90 86-196 57-146 (200)
57 1o7i_A SSB, SSO2364, single st 31.8 1.5E+02 0.005 21.5 6.8 42 152-194 7-53 (119)
58 3e0e_A Replication protein A; 29.9 1E+02 0.0034 21.8 5.3 44 151-195 6-54 (97)
59 3kf8_A Protein STN1; OB fold; 28.0 1.6E+02 0.0054 24.7 6.8 95 82-198 83-185 (220)
60 2wkd_A ORF34P2; SSB, single-st 25.9 1.3E+02 0.0045 22.6 5.3 32 150-186 51-82 (119)
61 2gjh_A Designed protein; oblig 25.7 43 0.0015 22.1 2.3 34 136-169 6-54 (62)
62 2k50_A Replication factor A re 25.1 1.7E+02 0.0059 20.7 5.9 44 151-195 11-59 (115)
63 1eov_A ASPRS, aspartyl-tRNA sy 24.9 2.2E+02 0.0076 26.1 7.9 46 149-199 86-131 (487)
64 3f9v_A Minichromosome maintena 23.5 62 0.0021 30.4 3.9 61 132-200 203-264 (595)
65 3a74_A Lysyl-tRNA synthetase; 23.4 2.2E+02 0.0075 26.3 7.6 79 86-198 58-139 (493)
66 2xgt_A Asparaginyl-tRNA synthe 20.9 4.6E+02 0.016 23.5 10.0 82 86-197 13-96 (435)
67 4gop_C Putative uncharacterize 20.1 76 0.0026 28.5 3.6 34 135-170 174-209 (444)
No 1
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.97 E-value=2.2e-31 Score=209.22 Aligned_cols=116 Identities=28% Similarity=0.481 Sum_probs=102.4
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeC-hhHHHHHHhhcCCCCeEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN-EILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~g-k~lAe~~~~~LkKGd~V~ 160 (214)
++||+|+|+|+|++||++|++++|.+++.|+||+++.|+++++|++ .+.|+||+|++|| + +|+.+.++|+||++|+
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~--~~~t~~~~v~~wg~~-~Ae~~~~~l~KG~~V~ 80 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNEL--KSKTDWHRIVVYDQN-IVDLIDKYLRKGRRVY 80 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCE--EEEEEEEEEEECCHH-HHHHHHHHCCTTCEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcE--ecccEEEEEEEEEch-HHHHHHhhcCCCCEEE
Confidence 6899999999999999999999999999999999999988766886 4689999999999 7 9999999999999999
Q ss_pred EEEEeEEeeeecCC-CCeEEEEEEEEEEe-CCcEEEecCCCC
Q 028045 161 VEGDIEIRVYNDSI-NGEVKNIPEICIRR-DGTLRLVKSGES 200 (214)
Q Consensus 161 VeGrL~tr~w~dk~-dG~~r~~~eIvv~~-~g~I~~L~~~~~ 200 (214)
|+|+|+++.|+|+. +|++++.++|+|+. .++|+||+++++
T Consensus 81 V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 81 VQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC----
T ss_pred EEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCC
Confidence 99999999999864 79999999999974 558999998865
No 2
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.97 E-value=6.9e-31 Score=215.03 Aligned_cols=115 Identities=26% Similarity=0.473 Sum_probs=103.5
Q ss_pred ccc-cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCe
Q 028045 80 GFR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 158 (214)
Q Consensus 80 ~m~-~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~ 158 (214)
.|+ +||+|+|+|+|++||++|++++|..|+.|+||+++.|+++.+|++ .+.|+||+|++||+ +|+.+.++|+||++
T Consensus 3 ~Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~--~e~t~~i~vv~wg~-~Ae~~~~~l~KG~~ 79 (158)
T 3tqy_A 3 AMARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGEL--QERTEWHRIAFFNR-LAEIVGEYLRKGSK 79 (158)
T ss_dssp -CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCE--EEEEEEEEEEEETH-HHHHHHHHCCTTCE
T ss_pred chhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCE--eeeeEEEEEEEEhH-HHHHHHhhcCCCCE
Confidence 464 899999999999999999999999999999999999987656887 45799999999999 99999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCCC
Q 028045 159 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 201 (214)
Q Consensus 159 V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~~ 201 (214)
|+|+|+|+++.|+++ +|++++.++|+|+ +|+||++++..
T Consensus 80 V~VeG~L~~~~~~dk-dG~~r~~~eV~a~---~i~~L~~k~~~ 118 (158)
T 3tqy_A 80 IYIEGSLRTRKWQDK-NGVDRYTTEIIAN---EMHMLDNRGGG 118 (158)
T ss_dssp EEEEEEEEEEEEECS-SSCEEEEEEEEEE---EEEECC-----
T ss_pred EEEEEEEEeeeEECC-CCCEEEEEEEEEe---EEEEccCCccc
Confidence 999999999999999 9999999999999 99999888653
No 3
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.97 E-value=1.5e-30 Score=210.02 Aligned_cols=115 Identities=25% Similarity=0.494 Sum_probs=106.7
Q ss_pred cccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEE
Q 028045 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 81 m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~ 160 (214)
+++||+|+|+|+|++||++|++++|.+|+.|+||+++.|+++++|++ .+.++||+|++|++ +|+.+.++|+||++|+
T Consensus 2 ~~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~--~~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~ 78 (145)
T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEM--KEQTEWHRVVLFGK-LAEVASEYLRKGSQVY 78 (145)
T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSC--CCCCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred CCceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcE--ecccEEEEEEEehH-HHHHHHHhcCCCCEEE
Confidence 46899999999999999999999999999999999999987756876 56899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEE---EEEeCCcEEEecCCCCCC
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEI---CIRRDGTLRLVKSGESIS 202 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eI---vv~~~g~I~~L~~~~~~~ 202 (214)
|+|+|+++.|+|+ +|++++.++| +++ +|+||++++...
T Consensus 79 V~G~L~~~~~~d~-dG~~r~~~ei~a~va~---~i~~l~~~~~~~ 119 (145)
T 1qvc_A 79 IEGQLRTRKWTDQ-SGQDRYTTEVVVNVGG---TMQMLGGRQGGG 119 (145)
T ss_dssp EEEEEEEEEECSS-SSCEEEEEEEECTTCE---EEECCCCSCCCS
T ss_pred EEEEEEeeEEECC-CCcEEEEEEEeeeEeC---EEEEccCCCcCc
Confidence 9999999999999 9999999999 888 999998875543
No 4
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.97 E-value=1e-30 Score=220.57 Aligned_cols=120 Identities=24% Similarity=0.485 Sum_probs=100.7
Q ss_pred cc-cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeE
Q 028045 81 FR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (214)
Q Consensus 81 m~-~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V 159 (214)
|+ +||+|+|+|||++||++|++++|++|++|+||+++.|+++++|++ .+.|+||+|++|++.+|+.+.++|+||++|
T Consensus 22 Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~--~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V 99 (193)
T 3pgz_A 22 MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNER--KERTEWHNIVIFNENLVKVVEQYLKKGSKI 99 (193)
T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-------EEEEEEEEEEECCHHHHHHHHHHCCTTCEE
T ss_pred HhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCce--eeeeEEEEEEEECHHHHHHHHhhcCCCCEE
Confidence 54 799999999999999999999999999999999999987756876 458999999999965999999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEe-CCcEEEecCCCCCCC
Q 028045 160 YVEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKSGESISK 203 (214)
Q Consensus 160 ~VeGrL~tr~w~dk~dG~~r~~~eIvv~~-~g~I~~L~~~~~~~~ 203 (214)
+|+|+|+++.|+|+ +|+++|.++|+|+. .++|+||+++.....
T Consensus 100 ~VeGrL~trswedk-dG~kr~~tEVva~~~~~~i~fL~sk~~~~~ 143 (193)
T 3pgz_A 100 YIEGQLQTRKWQDQ-NGNDRYTTEIVLQKYRGELQMLDGRAAAGG 143 (193)
T ss_dssp EEEEEEEEEEEECT-TSCEEEEEEEEECTTCCEEEECC-------
T ss_pred EEEEEEEEEEeECC-CCCEEEEEEEEEEeccCceEECcCCCCCCC
Confidence 99999999999999 99999999999984 457999998876443
No 5
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.97 E-value=1e-30 Score=216.42 Aligned_cols=119 Identities=27% Similarity=0.465 Sum_probs=88.8
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~V 161 (214)
.+||+|+|+||||+||++|++++|++|++|+||+++.|+++++|++ .+.|+||+|++||+.+|+.+.++|+||++|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~--~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~V 98 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQK--VEKTEWHSVVVFNPHFAKIALQYLHKGSKVYI 98 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC--------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCcc--ccccEEEEEEEeCHHHHHHHHHhCCCCCEEEE
Confidence 6899999999999999999999999999999999999987756887 56899999999997799999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEe-CCcEEEecCCCCCCC
Q 028045 162 EGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKSGESISK 203 (214)
Q Consensus 162 eGrL~tr~w~dk~dG~~r~~~eIvv~~-~g~I~~L~~~~~~~~ 203 (214)
+|+|+++.|+|+ +|++++.++|+|+. ..+|+||++++....
T Consensus 99 eGrL~~r~~~dk-dG~~r~~~eIva~~~~~~i~~L~~k~~~~~ 140 (169)
T 3lgj_A 99 EGKLQTRKWQDK-NGHDRYTTEIVLPQYKGELHLLDAKKEQSA 140 (169)
T ss_dssp EEEEEEECC---------CEEEEEECTTCCEEEEECC------
T ss_pred EEEEEEEEEECC-CCCEEEEEEEEEEeccCcEEEccCCCcccc
Confidence 999999999999 99999999999962 458999998876444
No 6
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.97 E-value=1.6e-30 Score=201.88 Aligned_cols=110 Identities=16% Similarity=0.267 Sum_probs=96.0
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~V 161 (214)
.+||+|+|+|+|++||++|++++|.+++.|+||+++.|+++ +|++ .++||+|++||+ +|+.+.++|+||++|+|
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~-~g~~----~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~V 76 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNA-SGEI----EADYVNCTLWRK-TAENTALYCQKGSLVGV 76 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCS-SSCC----CEEEEEEEEEHH-HHHHHHHHCCTTCEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCC-CCcc----ccEEEEEEEECH-HHHHHHHhCCCCCEEEE
Confidence 36999999999999999999999999999999999988776 4753 799999999999 99999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCCC
Q 028045 162 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 201 (214)
Q Consensus 162 eGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~~ 201 (214)
+|+|+++.|+|+ +|++++.++|+|+ .|+||+++++.
T Consensus 77 ~G~l~~~~~~d~-dG~~~~~~ev~a~---~i~~l~~~~~~ 112 (116)
T 3vdy_A 77 SGRIQTRSYENE-EGVNVYVTEVLAD---TVRFMDPKPRE 112 (116)
T ss_dssp EEEEEEEEEC-----CCEEEEEEEEE---EEEECC-----
T ss_pred EEEEEeeEEECC-CCCEEEEEEEEEE---EEEEccCCCcc
Confidence 999999999999 9999999999999 99999888653
No 7
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.97 E-value=5.5e-31 Score=209.13 Aligned_cols=115 Identities=25% Similarity=0.444 Sum_probs=98.9
Q ss_pred cc-ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceecc-----CCCcccCCCCceEEEEEEeChhHHHHHHhhc
Q 028045 80 GF-RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQR-----IVGSKDLPKPVQWHRIAVHNEILGSYAVKQL 153 (214)
Q Consensus 80 ~m-~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~-----~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~L 153 (214)
.| ++||+|+|+||||+||++|++++|.+++.|+||+++.|+++ .+|++ ...++||+|++||+.+|+.+.++|
T Consensus 9 ~m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~--~~~t~w~~v~~wg~~~Ae~~~~~l 86 (132)
T 3ull_A 9 VLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDV--SQKTTWHRISVFRPGLRDVAYQYV 86 (132)
T ss_dssp -CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CC--EEEEEEEEEEECSTTHHHHHHHHC
T ss_pred hhhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCce--ecceEEEEEEEEchHHHHHHHhhC
Confidence 35 48999999999999999999999999999999999999863 24555 468999999999933999999999
Q ss_pred CCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCC
Q 028045 154 VKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGES 200 (214)
Q Consensus 154 kKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~ 200 (214)
+||++|+|+|+|+++.|+|+ +|++++.++|+|+ +|+||++++.
T Consensus 87 ~KG~~V~V~G~L~~~~~~d~-dG~~r~~~ev~a~---~i~~l~~~~k 129 (132)
T 3ull_A 87 KKGSRIYLEGKIDYGEYMDK-NNVRRQATTIIAD---NIIFLSDQTK 129 (132)
T ss_dssp CTTCEEEEEEEEECCCEESS-SSEECCCEEEEEE---EEECC-----
T ss_pred CCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEEccCCCc
Confidence 99999999999999999999 9999999999999 9999988765
No 8
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=1.2e-30 Score=212.74 Aligned_cols=115 Identities=21% Similarity=0.362 Sum_probs=87.2
Q ss_pred ccccccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECC-ceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCC
Q 028045 78 GWGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGG-LFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKN 156 (214)
Q Consensus 78 ~~~m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~-~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKG 156 (214)
-+-|..||+|+|+||||+||++|++++|.+|+.|+||+++ .|+++ +|++ . .|+||+|++||+ +|+.+.++|+||
T Consensus 10 ~~~~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~-~Ge~--~-~t~~~~v~~wg~-~Ae~~~~~l~KG 84 (153)
T 1z9f_A 10 HHHMSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNA-PDDA--Q-TTDFFRIVTFGR-LAEFARTYLTKG 84 (153)
T ss_dssp --CCSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC---------------CEEEEEEEEEHH-HHHHHHHHCCTT
T ss_pred cccccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccC-CCCE--e-eeEEEEEEEECH-HHHHHHhhCCCC
Confidence 4678999999999999999999999999999999999999 88876 5875 2 399999999999 999999999999
Q ss_pred CeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCCC
Q 028045 157 SSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 201 (214)
Q Consensus 157 d~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~~ 201 (214)
++|+|+|+|+++.|+++ +|++++.++|+|+ .|+||++++..
T Consensus 85 ~~V~VeGrL~~~~~~dk-dG~~r~~~eV~a~---~i~~l~~~~~~ 125 (153)
T 1z9f_A 85 RLVLVEGEMRMRRWETP-TGEKRVSPEVVAN---VVRFMDRKPAE 125 (153)
T ss_dssp CEEEEEEEEEEEC--------CCCEEEEEEE---EEEECC-----
T ss_pred CEEEEEEEEEeceEECC-CCCEEEEEEEEEE---EEEEccCCCcc
Confidence 99999999999999998 9999999999999 99999887653
No 9
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.97 E-value=3.4e-30 Score=205.46 Aligned_cols=111 Identities=20% Similarity=0.288 Sum_probs=102.6
Q ss_pred cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEE
Q 028045 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (214)
Q Consensus 83 ~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~Ve 162 (214)
+||+|+|+|+|++||++|++++|.+++.|+||+++.|++++ |++ .+.++||+|++||+ +|+.+.++|+||++|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~-G~~--~~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~V~ 76 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQD-GTL--GEEVCFIDARLFGR-TAEIANQYLSKGSSVLIE 76 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSS-SCE--EEEEEEEEEEEEHH-HHHHHHHHCCTTCEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCC-CCC--ccccEEEEEEEEcH-HHHHHHHhCCCCCEEEEE
Confidence 48999999999999999999999999999999999998874 876 45899999999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCCC
Q 028045 163 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 201 (214)
Q Consensus 163 GrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~~ 201 (214)
|+|+++.|+++ +|++++.++|+|+ +|+||++++..
T Consensus 77 G~L~~~~~~dk-dG~~r~~~ev~a~---~i~~l~~~~~~ 111 (134)
T 2vw9_A 77 GRLTYESWMDQ-TGKKNSRHTITAD---SLQFMDKKSDN 111 (134)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEEE---EEEECCCC---
T ss_pred EEEEeeeEECC-CCCEEEEEEEEEE---EEEEccCCccc
Confidence 99999999999 9999999999999 99999877553
No 10
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.97 E-value=1.5e-30 Score=211.39 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=90.4
Q ss_pred cccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhH-HHHHHhhcCCCCeE
Q 028045 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL-GSYAVKQLVKNSSV 159 (214)
Q Consensus 81 m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~l-Ae~~~~~LkKGd~V 159 (214)
|++||+|+|+||||+||+ |++ +|.+|+.|+||+++.|+++ +|++. .+.|+||+|++||+ + |+++.+||+||++|
T Consensus 3 ~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~-~Ge~~-~~~t~w~~vv~wgk-~lAe~~~~yl~KG~~V 77 (148)
T 3k7u_C 3 SKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTH-PTQEV-VVEKDHHTIRCFGE-LFSAEVKQKVKEGNVV 77 (148)
T ss_dssp --CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-------------CEEEEEEEEESH-HHHHHHHHHCCTTCEE
T ss_pred cccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecC-CCCEE-ccccEEEEEEEECc-HHHHHHHhhCCCCCEE
Confidence 468999999999999999 999 9999999999999998876 47631 57899999999999 7 99999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEE--eCCcEEEecCCCCCCCCChhh
Q 028045 160 YVEGDIEIRVYNDSINGEVKNIPEICIR--RDGTLRLVKSGESISKISFDD 208 (214)
Q Consensus 160 ~VeGrL~tr~w~dk~dG~~r~~~eIvv~--~~g~I~~L~~~~~~~~~s~~e 208 (214)
+|+|+|+++.|+|+ +|+++|.++|++- ..|.+++|.++......+...
T Consensus 78 ~VeGrL~~r~~~dk-dG~kr~~teVi~v~~~~g~~~ll~~~r~~~~~~~~~ 127 (148)
T 3k7u_C 78 CVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVNP 127 (148)
T ss_dssp EEEEEEEECCCSCC-C-----CCEEEEECTTTCEEEEEECCC---------
T ss_pred EEEEEEEeeeeECC-CCCEEEEEEEEEEecCCCeEEEccCCCCCCCCCCCc
Confidence 99999999999999 9999999999864 268899999887766555443
No 11
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.96 E-value=2.5e-29 Score=199.55 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=97.8
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~V 161 (214)
..+|+|+|+|+||+||++|++++| +++.|+||+++.|+++++|++. ...|+||+|++||+ +|+.+.++|+||++|+|
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~-d~~t~w~~v~~wg~-~Ae~~~~~l~KG~~V~V 89 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWT-DGHTNFFTVWANRQ-LATNASGSLAVGDPVVV 89 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEE-EEEEEEEEEEEEHH-HHHHHHHHCCTTCEEEE
T ss_pred cceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCcee-cCCcEEEEEEEEcH-HHHHHHHhcCCCCEEEE
Confidence 469999999999999999999999 9999999999999887678872 23899999999999 99999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEe
Q 028045 162 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195 (214)
Q Consensus 162 eGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L 195 (214)
+|+|+++.| ++ ||++++.++|+|+ .|.+-
T Consensus 90 eGrL~~~~~-dk-dG~~r~~~ev~a~---~vg~d 118 (128)
T 4dam_A 90 QGRLKVRTD-VR-EGQSRTSADIDAV---AIGHD 118 (128)
T ss_dssp EEEEEEEEE-EE-TTEEEEEEEEEEE---EEEEC
T ss_pred EEEEEEeEE-cC-CCCEEEEEEEEEE---EEEec
Confidence 999999999 88 9999999999999 77653
No 12
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.96 E-value=1.5e-29 Score=195.77 Aligned_cols=98 Identities=12% Similarity=0.191 Sum_probs=81.6
Q ss_pred ccccEEEEEEEeCCCceEEEecCC-cEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNG-KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG-~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~ 160 (214)
..||.|+|+|||++||++|++++| .++++|+||++ .|++. +.|+||+|++||+ +||.+.+||+||++|+
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~-~~~~~--------~~t~fi~vv~wgk-~AE~~~~yl~KG~~V~ 78 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFP-GLSSK--------DAPARLKVVGWGA-VAQELQDRCRLNDEVV 78 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEEC-C-------------CCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEEC-CcccC--------CCcEEEEEEEEhH-HHHHHHHhCCCCCEEE
Confidence 679999999999999999999998 99999999999 66532 3799999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEE
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLR 193 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~ 193 (214)
|+|+|+++.|+++ +|+++|.+||+|+ +|.
T Consensus 79 VeGrL~~r~y~~k-dG~kr~~tEVva~---~i~ 107 (108)
T 3koj_A 79 LEGRLRINSLLKP-DGNREKQTELTVT---RVH 107 (108)
T ss_dssp EEEEEEEEC---------CCEEEEEEE---EEE
T ss_pred EEEEEEeeeEECC-CCCEEEEEEEEEE---EEE
Confidence 9999999999999 9999999999999 664
No 13
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.96 E-value=3.4e-30 Score=214.78 Aligned_cols=113 Identities=26% Similarity=0.515 Sum_probs=103.7
Q ss_pred cccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEE
Q 028045 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 81 m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~ 160 (214)
|++||+|+|+|+|++||++|++++|..|+.|+||+++.|+++++|++ .+.|+||+|++||+ +|+.+.++|+||++|+
T Consensus 3 ~~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~--~~~t~~i~vv~wg~-~Ae~~~~~l~KG~~V~ 79 (178)
T 1eqq_A 3 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEM--KEQTEWHRVVLFGK-LAEVASEYLRKGSQVY 79 (178)
T ss_dssp CCCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSC--CCEEEEEEEEECHH-HHHHHHHHCCTTCEEE
T ss_pred ccCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCce--ecccEEEEEEEccH-HHHHHHHhcCCCCEEE
Confidence 45899999999999999999999999999999999999987756887 56899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEE---EEEeCCcEEEecCCCC
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEI---CIRRDGTLRLVKSGES 200 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eI---vv~~~g~I~~L~~~~~ 200 (214)
|+|+|+++.|+++ +|++++.++| +++ +|+||.++..
T Consensus 80 VeGrL~~r~~~dk-dG~~r~~~eI~v~va~---~i~~l~~~~~ 118 (178)
T 1eqq_A 80 IEGQLRTRKWTDQ-SGQDRYTTEVVVNVGG---TMQMLGGRQG 118 (178)
T ss_dssp ECCEEEEEEEECS-SSEEEEEEEEECSSSC---CEECSCC---
T ss_pred EEEEEEeeeEECC-CCCEEEEEEEeeeecC---eEEEccccCC
Confidence 9999999999999 9999999999 777 9999987654
No 14
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.96 E-value=1.4e-29 Score=209.23 Aligned_cols=115 Identities=19% Similarity=0.329 Sum_probs=94.1
Q ss_pred cccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEE
Q 028045 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 81 m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~ 160 (214)
|.+||+|+|+|||++||++|++++|+.|++|+||+++.|+++++|++. ...|+||+|++|++ +|+.+.++|+||++|+
T Consensus 1 Ma~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~-d~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~ 78 (168)
T 3afp_A 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWK-DGEALFLRCNIWRE-AAENVAESLTRGARVI 78 (168)
T ss_dssp --CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCC-CCCCEEEEEEEEHH-HHHHHHHHCCTTCEEE
T ss_pred CCccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEe-cCCcEEEEEEEehH-HHHHHHHhCCCCCEEE
Confidence 778999999999999999999999999999999999888766568762 23699999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEe-CCcEEEecCC
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKSG 198 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eIvv~~-~g~I~~L~~~ 198 (214)
|+|+|+++.|+++ +|++++.++|+|+. ...|+||.++
T Consensus 79 VeGrL~~~~~~dk-dG~~r~~~ev~a~~v~~~l~~l~~~ 116 (168)
T 3afp_A 79 VTGRLKQRSFETR-EGEKRTVVEVEVDEIGPSLRYATAK 116 (168)
T ss_dssp EEEEEEEEEEC-C-CSCCEEEEEEEEEEEEECCSSEEEE
T ss_pred EEEEEEeeeEECC-CCcEEEEEEEEEEEeecCEEEeccc
Confidence 9999999999999 99999999998872 3356777554
No 15
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.96 E-value=2.5e-29 Score=207.15 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=91.9
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhH-HHHHHhhcCCCCeEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL-GSYAVKQLVKNSSVY 160 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~l-Ae~~~~~LkKGd~V~ 160 (214)
.+||+|+|+||||+||++|+++ .+|+.|+||+++.|.++++|++ .+.|+||+|++||+ + |+.+.+||+||++|+
T Consensus 20 ~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~--~~~Tdw~~Vv~wgk-~lAE~~~~yL~KGs~V~ 94 (164)
T 3k81_C 20 KSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEV--VVEKDHHTIRCFGE-LFSAEVKQKVKEGNVVC 94 (164)
T ss_dssp CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------C--CCCCEEEEEEECCH-HHHHHHHHHCCTTCEEE
T ss_pred cCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcC--ccceEEEEEEEECC-HHHHHHHhhcCCCCEEE
Confidence 5799999999999999999998 8999999999977766556765 56899999999999 7 999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEE-EEEEEEE-eCCcEEEecCCCCCCCCChhhhhc
Q 028045 161 VEGDIEIRVYNDSINGEVKN-IPEICIR-RDGTLRLVKSGESISKISFDDLRE 211 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~-~~eIvv~-~~g~I~~L~~~~~~~~~s~~e~~~ 211 (214)
|+|+|+++.|+|+ +|++++ ..+|+|. ..|.+++|+.+...+.++....-|
T Consensus 95 VeGrL~tr~w~D~-~g~k~~~~~~i~V~~~~g~l~~L~~~r~~~~~~~~~~~~ 146 (164)
T 3k81_C 95 VNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVNPAVE 146 (164)
T ss_dssp ECCEEEEECCCCS-SCSCCCCEEEEEECTTTCCEEEECC--------------
T ss_pred EEEEEEeeeEEcC-CCCEEEEEEEEEEeCCCCEEEEecCCCCCCCCcCCcchh
Confidence 9999999999999 887655 4555665 358999999887766666555443
No 16
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.95 E-value=4.1e-28 Score=205.50 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=82.1
Q ss_pred cccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEE
Q 028045 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 81 m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~ 160 (214)
|+.+|+|+|+|||++||++|++++|++|++|+||+++++.++++|++. ...|+||+|++|++ +|+.+.++|+||++|+
T Consensus 1 Ma~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~-d~~T~wi~Vvawgk-lAE~v~~~L~KG~~V~ 78 (199)
T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWK-DGESLFLTCSVWRQ-AAENVAESLQRGMRVI 78 (199)
T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC------------CCCCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred CCcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEe-cCccEEEEEEEEhH-HHHHHHHhcCCCCEEE
Confidence 788999999999999999999999999999999999665555467762 34899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEE
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRL 194 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~ 194 (214)
|+|+|+++.|+|+ +|++++.++|+|+ +|.+
T Consensus 79 VeGrL~~rswedk-dG~kr~~~eVvA~---~Ig~ 108 (199)
T 3eiv_A 79 VQGRLKQRSYEDR-EGVKRTVYELDVD---EVGA 108 (199)
T ss_dssp EEEEEEEEC---------CCEEEEEEE---EEEE
T ss_pred EEEEEEeeEEECC-CCCEEEEEEEEEE---EEec
Confidence 9999999999999 9999999999999 6665
No 17
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.95 E-value=1e-27 Score=191.88 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=94.3
Q ss_pred ccccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeE
Q 028045 80 GFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (214)
Q Consensus 80 ~m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V 159 (214)
+|.+||+|+|+|+|++||++|++++|.+|+.|+||++ +|+++ +|++ .+.++||+|++||+ +||.+.+||+||++|
T Consensus 15 ~m~M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~-~~~~~-~G~~--~~~~~~i~vv~wGk-~AE~~~~yl~KGs~V 89 (134)
T 1v1q_A 15 NSLMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE-AGFH--RQAWCQMPVIVSGH-ENQAITHSITVGSRI 89 (134)
T ss_dssp GGGCCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEE-EEEEE-TTEE--EEEEEEEEEEEEST-GGGGGGTTCCTTCEE
T ss_pred CCcceeEEEEEEEECcCCceEECCCCCEEEEEEEEEe-CcCcC-CCCE--ecceEEEEEEEEhH-HHHHHHHhcCCCCEE
Confidence 4455699999999999999999999999999999996 56655 5765 45678999999999 999999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCC
Q 028045 160 YVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGES 200 (214)
Q Consensus 160 ~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~ 200 (214)
+|+|+|+++. ++ +|++++.+ +|+ +|+||++++.
T Consensus 90 ~VeGrL~tr~--~k-~G~kr~~~--~a~---~i~~l~~k~~ 122 (134)
T 1v1q_A 90 TVQGFISCHK--AK-NGLSKMVL--HAE---QIELIDSVDK 122 (134)
T ss_dssp EEEEEEEEEC--TT-TTSCEEEE--EEE---EEEETTSCSC
T ss_pred EEEEEEEEEE--CC-CCCEEEEE--EEE---EEEECcCCCC
Confidence 9999999984 67 89988876 788 9999987754
No 18
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.94 E-value=6.1e-27 Score=208.99 Aligned_cols=110 Identities=16% Similarity=0.272 Sum_probs=94.0
Q ss_pred cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhh-cCCCCeEEE
Q 028045 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQ-LVKNSSVYV 161 (214)
Q Consensus 83 ~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~-LkKGd~V~V 161 (214)
+||+|+|+|+|++||++|++++|.+|+.|+||+++.|+++ +|++ .+.++||+|++||+ +|+.+.++ |+||++|+|
T Consensus 4 ~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~-~G~~--~~~t~~i~vv~~g~-~Ae~~~~~~l~KG~~V~V 79 (301)
T 1se8_A 4 GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGN-DGRE--RNLPWYHRVSILGK-PAEWQAERNLKGGDAVVV 79 (301)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC----------CEEEEEEEEEEESH-HHHHHHHTCCCTTCEEEE
T ss_pred ceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECC-CCCE--ecceEEEEEEEEcH-HHHHHHhhCCCCCCEEEE
Confidence 7999999999999999999999999999999999998876 5876 46799999999999 99999999 999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCC
Q 028045 162 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGES 200 (214)
Q Consensus 162 eGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~ 200 (214)
+|+|+++.|+++ +|++++.++|+|+ +|+||++++.
T Consensus 80 eG~L~~r~~~dk-dG~~r~~~ev~a~---~i~~l~~~~~ 114 (301)
T 1se8_A 80 EGTLEYRQWEAP-EGGKRSAVNVKAL---RMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEEEC------CEEEEEEEEE---EEEECSSCCC
T ss_pred EEEEEeeeEECC-CCCEEEEEEEEEe---EEEEeecccc
Confidence 999999999998 9999999999999 9999987764
No 19
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.94 E-value=1.1e-26 Score=202.94 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=94.5
Q ss_pred CCCCCCcccc-ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHH
Q 028045 72 GVDPRRGWGF-RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAV 150 (214)
Q Consensus 72 ~~~~~~~~~m-~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~ 150 (214)
..|...+-.| ++||+|+|+|+|++||++|++++|++++.|+||+++.|+ |++ .+.++||+|++||+ +|+.+.
T Consensus 115 ~~d~~g~~~m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~----g~~--~~~t~~~~v~~wg~-~Ae~~~ 187 (264)
T 2fxq_A 115 LEDARGQPRLRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRR----GQE--EERTHFLEVQAWRE-LAEWAS 187 (264)
T ss_dssp ----------CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------------EEEEEEEEEHH-HHHHHT
T ss_pred ccccccccccccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcC----CCC--ccccEEEEEEEECh-HHHHhh
Confidence 3455555455 489999999999999999999999999999999999876 443 45799999999999 999999
Q ss_pred hhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCCCC
Q 028045 151 KQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESIS 202 (214)
Q Consensus 151 ~~LkKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~~~ 202 (214)
+|+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||++++..+
T Consensus 188 -~l~KG~~V~V~G~l~~~~~~~~-dG~~~~~~ev~a~---~i~~l~~~~~~~ 234 (264)
T 2fxq_A 188 -ELRKGDGLLVIGRLVNDSWTSS-SGERRFQTRVEAL---RLERPTRGPAQA 234 (264)
T ss_dssp -TCCTTCEEEEEEEEEEEEEECT-TSCEEEEEEEEEE---EEECCCC-----
T ss_pred -hcCCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEECccccccc
Confidence 9999999999999999999999 9999999999999 999998776543
No 20
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.94 E-value=1.2e-26 Score=202.74 Aligned_cols=108 Identities=17% Similarity=0.313 Sum_probs=93.0
Q ss_pred cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEE
Q 028045 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (214)
Q Consensus 83 ~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~Ve 162 (214)
+||+|+|+|+|++||++|++++|.+++.|+||+++.|+++ +|++ .+.++||+|++||+ +|+.+.++|+||++|+|+
T Consensus 4 ~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~-~G~~--~~~t~~~~v~~~g~-~Ae~~~~~l~KG~~V~V~ 79 (264)
T 2fxq_A 4 GLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDE-SGQE--REVPWYHRVRLLGR-QAEMWGDLLEKGQLIFVE 79 (264)
T ss_dssp CEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECT-TSCE--EEEEEEEEEEEETH-HHHHHTTTCCTTCEEEEE
T ss_pred ceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECC-CCCE--ecccEEEEEEEEch-HHHHHHHhCCCCCEEEEE
Confidence 7999999999999999999999999999999999999877 4876 45799999999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCC
Q 028045 163 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGE 199 (214)
Q Consensus 163 GrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~ 199 (214)
|+|+++.|++ +|++++.++|+|+ +|+||+++.
T Consensus 80 G~L~~~~~~~--dG~~r~~~ev~a~---~i~~l~~~~ 111 (264)
T 2fxq_A 80 GRLEYRQWEK--DGEKKSEVQVRAE---FIDPLEGRG 111 (264)
T ss_dssp EEEEEC-----------CCEEEEEE---EEEECCCC-
T ss_pred EEEEeeeEEe--CCEEEEEEEEEEE---EEEECcCCc
Confidence 9999999997 8999999999999 999998876
No 21
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.94 E-value=2.6e-26 Score=201.13 Aligned_cols=109 Identities=14% Similarity=0.190 Sum_probs=97.4
Q ss_pred cccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhH--HHHHHhhcCCCCe
Q 028045 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL--GSYAVKQLVKNSS 158 (214)
Q Consensus 81 m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~l--Ae~~~~~LkKGd~ 158 (214)
|++||+|+|+||| +||++|+++ |+++++|+||+++.|++++.++. .+.|+||+|++||+ + |+ ++++|+||++
T Consensus 143 M~~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~--~~~Tdw~~Vv~wgk-~~~AE-i~~~L~KG~~ 216 (257)
T 4dni_A 143 MKSVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEV--VVEKDHHTIRCFGE-LFSAE-VKQKVKEGNV 216 (257)
T ss_dssp TSCEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSC--EEEEEEEEEEEESH-HHHHH-HHHHCCTTCE
T ss_pred ccccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceE--ccceEEEEEEEECC-ccHHH-HHhhCCCCCE
Confidence 8999999999999 999999999 99999999999999987643332 35899999999999 8 99 8889999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEE-EEE-eCCcEEEec
Q 028045 159 VYVEGDIEIRVYNDSINGEVKNIPEI-CIR-RDGTLRLVK 196 (214)
Q Consensus 159 V~VeGrL~tr~w~dk~dG~~r~~~eI-vv~-~~g~I~~L~ 196 (214)
|+|+|+|+++.|+|+ +|+++|.+++ .|. ..|.+++|.
T Consensus 217 V~VeGrL~tr~~~D~-~G~kr~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 217 VCVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp EEEEEEEEEEEEECS-SSSCEEEEEEEEECTTTCEEEECC
T ss_pred EEEEEEEEeeeEEcC-CCCEEEEEEEEEEECCCCEEEEec
Confidence 999999999999999 9999888775 455 588999885
No 22
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.93 E-value=4.3e-26 Score=203.52 Aligned_cols=120 Identities=17% Similarity=0.316 Sum_probs=101.1
Q ss_pred CCCCCccccc-cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHh
Q 028045 73 VDPRRGWGFR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVK 151 (214)
Q Consensus 73 ~~~~~~~~m~-~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~ 151 (214)
.|..-+.-|. +||+|+|+|+|++||++|++++|.+|+.|+||+++.|++++ |++ .+.++||+|++||+ +|+.+.+
T Consensus 117 ~d~~gg~rm~~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~-Ge~--~~~t~~i~vvawg~-~Ae~~~~ 192 (301)
T 1se8_A 117 QDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQR--QEKVHYIDATLWRD-LAENMKE 192 (301)
T ss_dssp ECTTSCEEEETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT-SCE--EEEEEEEEEEEETH-HHHHHTT
T ss_pred cccccccchhcceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCC-CCc--ccccEEEEEEECCH-HHHHHHh
Confidence 3555566675 79999999999999999999999999999999999998774 876 45799999999999 9999999
Q ss_pred hcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCCC
Q 028045 152 QLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 201 (214)
Q Consensus 152 ~LkKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~~ 201 (214)
|+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||.++...
T Consensus 193 -l~KG~~V~V~GrL~~~~y~dk-dG~~r~~~ev~a~---~i~~l~~k~~~ 237 (301)
T 1se8_A 193 -LRKGDPVMIMGRLVNEGWTDK-DGNKRNSTRVEAT---RVEALARGAGN 237 (301)
T ss_dssp -CCTTCEEEEEEEEEEEECC-------CEEEEEEEE---EEEECCC----
T ss_pred -cCCCCEEEEEEEEeeeeEECC-CCcEEEEEEEEEE---EEEEeccCCCC
Confidence 999999999999999999999 9999999999999 99999877553
No 23
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.93 E-value=2.6e-26 Score=175.47 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=78.5
Q ss_pred cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEE
Q 028045 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (214)
Q Consensus 83 ~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~Ve 162 (214)
+||+|+|+|+|++||++|++++|.+++.|+||++ .+... ++.. ...+.||+|++||+ +|+.+.+||+||++|+|+
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~-~~~~~-~~~~--r~~~~~~~vv~~g~-~Ae~~~~~l~KG~~V~V~ 75 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE-AGFH--RQAWCQMPVIVSGH-ENQAITHSITVGSRITVQ 75 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE-EEEEE-TTEE--EEEEEEEEEEEESS-TTHHHHTTCCTTCEEEEE
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEe-Ccccc-CCce--eceeEEEEEEEEhH-HHHHHHhhCCCCCEEEEE
Confidence 4799999999999999999999999999999995 22211 2211 12334499999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCC
Q 028045 163 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 198 (214)
Q Consensus 163 GrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~ 198 (214)
|+|+++ +++ +|+++ ++|+|+ +|+||+++
T Consensus 76 G~L~~~--~~~-~G~~r--~~v~~~---~i~~l~~~ 103 (104)
T 1txy_A 76 GFISCH--KAK-NGLSK--MVLHAE---QIELIDSG 103 (104)
T ss_dssp EEEEC-----------C--CEEEEE---EEEEC---
T ss_pred EEEEec--cCC-CCCEE--EEEEEE---EEEECcCC
Confidence 999999 677 89987 999999 99999765
No 24
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.91 E-value=9.1e-25 Score=167.47 Aligned_cols=101 Identities=9% Similarity=0.013 Sum_probs=83.1
Q ss_pred cccccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCe
Q 028045 79 WGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 158 (214)
Q Consensus 79 ~~m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~ 158 (214)
..|.++|+|+|+|+|++||++|+|++|.+++.|+||+++.++ . +|++ .+.+.||+|++||+ +|| +.+ |+||++
T Consensus 2 ~~m~m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~-~-~g~~--~~~~~~i~vv~~gk-~Ae-~~~-l~KG~~ 74 (103)
T 3k8a_A 2 SHMGFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQE-E-NGQQ--CLVQLEIPARILGR-QAE-EWQ-YRQGDC 74 (103)
T ss_dssp --CCCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEE-E-TTEE--EEEEEEEEEEEEHH-HHH-HST-TCTTCE
T ss_pred CccccccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCc-c-CCCE--EEeeEEEEEEEEhH-Hhh-hhc-cCCCCE
Confidence 346655999999999999999999999999999999987665 3 4665 34455599999999 999 655 999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEec
Q 028045 159 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVK 196 (214)
Q Consensus 159 V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~ 196 (214)
|+|+|+|++++|... ...+.++ +|++++
T Consensus 75 v~veGrL~~rs~~~~-------~lvlhi~---~i~~i~ 102 (103)
T 3k8a_A 75 ATVEGFLAQKSRRSL-------MPMLRIQ---NIKEYK 102 (103)
T ss_dssp EEEEEEEEESSSSCC-------CEEEEEE---EEEECC
T ss_pred EEEEEEEEECccCCc-------cEEEEEE---EEEEcC
Confidence 999999999999432 5667777 788773
No 25
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.91 E-value=1.4e-24 Score=167.63 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=79.8
Q ss_pred ccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEEE
Q 028045 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 163 (214)
Q Consensus 84 mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~VeG 163 (214)
-|+|+|+|||++||++|++++|..+++|+||+++.+ ..++|++|++|++ +|+.+. +.||++|+|+|
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~-----------~~~Dfi~ivvw~k-lAe~~~--~~kG~~v~v~G 76 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLS-----------ETKDYLPITISNR-LFEGMN--LEVGTRVKIEG 76 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTT-----------SCEEEEEEEEEGG-GSTTCC--CCTTCEEEEEE
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCC-----------CCCcEEEEEEEhH-HhhHHh--hcCCCEEEEEE
Confidence 499999999999999999999999999999999742 3589999999999 999875 55999999999
Q ss_pred EeEE-eeeecCCCCeEEEEEEEEEEeCCcEEEec
Q 028045 164 DIEI-RVYNDSINGEVKNIPEICIRRDGTLRLVK 196 (214)
Q Consensus 164 rL~t-r~w~dk~dG~~r~~~eIvv~~~g~I~~L~ 196 (214)
+|++ +.|+++ +|++|+.++|+|+ +|+||+
T Consensus 77 ~lrsy~~~~~~-dG~~R~v~eV~a~---~i~fld 106 (107)
T 4gs3_A 77 QLRSYNRKSPE-EGKNKLILTVFAR---DISVVP 106 (107)
T ss_dssp EEEEEECC---------EEEEEEEE---EEEEEC
T ss_pred EEEecceEECC-CCCEEEEEEEEEE---EEEEcc
Confidence 9986 789988 9999999999999 999995
No 26
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.91 E-value=1.9e-24 Score=168.85 Aligned_cols=102 Identities=7% Similarity=0.004 Sum_probs=87.0
Q ss_pred ccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEEE
Q 028045 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 163 (214)
Q Consensus 84 mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~VeG 163 (214)
||+|+|+|+|++||++|+|++|.+++.|+||+++. .+. .|.. .+...|++|++||+ +||.+ +||+||++|+|+|
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~-~~~-~g~~--r~~~~~i~vv~~Gk-~AE~~-~~l~kGs~V~VeG 74 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESE-VVE-AGHP--RRVELTISAVALGD-LALLL-ADTPLGTEMQVQG 74 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEE-CCC-CC----CEEEEEEEEEEETH-HHHHH-TTCCTTCEEEEEE
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcce-eec-CCCe--eeeeEEEEEEEEhH-HHHhh-hccCCCCEEEEEE
Confidence 79999999999999999999999999999999654 333 3543 34556699999999 99998 9999999999999
Q ss_pred EeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCCC
Q 028045 164 DIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 201 (214)
Q Consensus 164 rL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~~ 201 (214)
+|++++ + +| +.++|.|+ +|+||+.+...
T Consensus 75 rL~trs---~-~G---~kl~l~a~---~Ie~l~~~~~~ 102 (115)
T 3fhw_A 75 FLAPAR---K-DS---VKVKLHLQ---QARRIAGSMGR 102 (115)
T ss_dssp EEEESS---T-TC---SSEEEEEE---EEEECCCSCCC
T ss_pred EEEECC---C-CC---CEEEEEEE---EEEEcCCCCCC
Confidence 999995 5 78 67899999 99999777553
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.85 E-value=1.1e-21 Score=149.97 Aligned_cols=84 Identities=6% Similarity=0.029 Sum_probs=69.5
Q ss_pred ccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEEE
Q 028045 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 163 (214)
Q Consensus 84 mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~VeG 163 (214)
||+|+|+|+|++||++|+|++|.+++.|+||+++.+.. .|.. .+...|++|++||+ +||.+.+ ++||++|.|+|
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e--~g~~--r~~~f~i~vv~wGk-~AE~~~~-~~kGs~V~VeG 75 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAME--AQAA--RQVEFSIEALGAGK-MASVLDR-IAPGTVLECVG 75 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEEC--C--E--EEEEEEEEEEEETH-HHHHHTT-SCTTCEEEEEE
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEec--CCCc--EeeeEEEEEEEEhH-HHHHHhh-cCCCCEEEEEE
Confidence 89999999999999999999999999999999876543 2433 23455699999998 9999986 78999999999
Q ss_pred EeEEeeeecC
Q 028045 164 DIEIRVYNDS 173 (214)
Q Consensus 164 rL~tr~w~dk 173 (214)
+|++++|..+
T Consensus 76 rL~trs~~s~ 85 (101)
T 3en2_A 76 FLARKHRSSK 85 (101)
T ss_dssp EEEECC----
T ss_pred EEEeCcCCCC
Confidence 9999999875
No 28
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.84 E-value=3.8e-20 Score=149.86 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=84.8
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~V 161 (214)
+.+|+|+|+|||+ ||+.+++. +.+++.|+||++..++. .|+ ..++||+|.|||.++|+.+.++|+||++|+|
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r--~ge----~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlV 113 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPS--PGD----PDKDFHTVRVFDSDYSSRVKEQLRDGEWFLV 113 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCC--TTS----CSEEEEEEEECSHHHHHHHHHHCCTTCEEEE
T ss_pred eecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCC--CCC----CccceEEEEEECChHHHHHHHHhcCCCEEEE
Confidence 7899999999996 89999984 78999999999987653 343 4799999999984499999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEE
Q 028045 162 EGDIEIRVYNDSINGEVKNIPEICI 186 (214)
Q Consensus 162 eGrL~tr~w~dk~dG~~r~~~eIvv 186 (214)
+|||+++.|+|+ +|++.|.+.++.
T Consensus 114 eGRLrmn~~~d~-~gkk~Y~~p~i~ 137 (148)
T 3stb_C 114 TGRLRMVPQYDG-SMRKYYHYPVIQ 137 (148)
T ss_dssp EEEEEEEEEEET-TTTEEEEEEEEE
T ss_pred EEEEEcceeECC-CCCEEeeccEEE
Confidence 999999999999 999998776653
No 29
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.81 E-value=5.7e-20 Score=160.94 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=82.0
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeC-hhHHHHHHhhcCCCCeEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN-EILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~g-k~lAe~~~~~LkKGd~V~ 160 (214)
++||+|+|+|||++| ++|+|++|. ++.|++++...++. .|+ ..++|+.|++|| + +||.+.+||+||++|+
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~--~ge----~~~df~~vv~wg~k-~AE~~~~yl~kG~~V~ 98 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPS--PGD----PDKDFHTVRVFDSD-YSSRVKEQLRDGEWFL 98 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCC--SSC----CCEEEEEEEECSHH-HHHHHHHHCCTTCEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCC--CCC----CcccEEEEEEECCH-HHHHHHHhccCCCEEE
Confidence 899999999999999 999999883 66777777765532 354 357788888999 7 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEE
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEICIR 187 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eIvv~ 187 (214)
|+|||++ |+++ ||++++.+||+++
T Consensus 99 VeGrL~~--~~~~-dG~kr~~~evva~ 122 (257)
T 4dni_A 99 VTGRLRM--VPQY-DGSMRKYYHYPVI 122 (257)
T ss_dssp EEEEEEE--EEEE-CSSSSSEEEEEEE
T ss_pred EEEEEEE--eECC-CCCcEEEEEEEEE
Confidence 9999999 8888 9999999999998
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.29 E-value=0.0052 Score=46.65 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=59.4
Q ss_pred EEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHH--HHHHhhcCCCCeEEEEE
Q 028045 86 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILG--SYAVKQLVKNSSVYVEG 163 (214)
Q Consensus 86 kV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lA--e~~~~~LkKGd~V~VeG 163 (214)
.+.|+|+|-.- +.-+. -...+..|+|.+... + ....++|.|-+||+ .+ +.+.+.|+-|+.|+|.|
T Consensus 5 n~vlvG~V~DV-Q~Gfl-~~~~V~Qftl~~d~e------~----~~eke~~tVRC~Gd-~~~~~~lk~~lk~g~~v~V~G 71 (105)
T 4dka_C 5 NALMIGRIADV-QHGFL-GAMTVTQYVLEVDGG------A----SGEKEFIVIRCMGD-NFPASLLKDQVKLGSRVLVQG 71 (105)
T ss_dssp EEEEEEEEEEE-EEEEE-TTEEEEEEEEEECC--------------CCEEEEEEEECC----------CCCTTCEEEEEE
T ss_pred ceEEEEEEEEe-eeccc-ccceEEEEEEEEeCC------C----CCcccEEEEEEcCc-cchHHHHHHHHhCCCEEEEEe
Confidence 46788888642 22122 347899999999542 1 13567999999998 55 77889999999999999
Q ss_pred EeEEeeeecCCCCeEE--EEEEEEEE-eCCcEEE
Q 028045 164 DIEIRVYNDSINGEVK--NIPEICIR-RDGTLRL 194 (214)
Q Consensus 164 rL~tr~w~dk~dG~~r--~~~eIvv~-~~g~I~~ 194 (214)
+|++..--|. +.++ ..+-|.+. -.|.+..
T Consensus 72 rLRm~p~~d~--~~kkyy~yP~IqV~pp~G~v~V 103 (105)
T 4dka_C 72 TLRMNRHVDD--VSKRLHAYPFIQVVPPLGYVKV 103 (105)
T ss_dssp EEECCCEECT--TTCSEECCCEEEEC--CCEEEE
T ss_pred EEEeeecccc--ccceeccCCEEEEECCCcEEEe
Confidence 9999877774 4444 45566654 2444443
No 31
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.54 E-value=0.0098 Score=43.85 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=53.2
Q ss_pred cEEEEEEEeCCCceEEE--ecCCc--EEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEE
Q 028045 85 HKAIICGKVKDTPVQKI--LRNGK--TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 85 NkV~LiGrVg~dPelr~--t~nG~--~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~ 160 (214)
..+.|+|+|-.-...+. .++|. .+..+.|+ |. +|. +++++|++ .|+. .+++|+.|.
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~------De-TG~---------I~~tlW~~-~~~~---~i~~Gdvv~ 71 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK------DD-TGS---------IRGTLWNE-LADF---EVKKGDIAE 71 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE------ET-TEE---------EEEEEEGG-GGGC---CCCTTCEEE
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE------CC-CCc---------EEEEEECC-cccc---ccCCCCEEE
Confidence 67899999988766655 34664 56666664 22 553 89999998 7754 799999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEE
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLR 193 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~ 193 (214)
|.|+.+ .|.. .++|.+.+.|.|+
T Consensus 72 i~g~v~--~~~~--------~~el~~g~~~~i~ 94 (97)
T 3e0e_A 72 VSGYVK--QGYS--------GLEISVDNIGIIE 94 (97)
T ss_dssp EEEEEE--EC----------CEEEEEEEEEEEE
T ss_pred EEEEEE--EcCC--------eEEEEECCCcEEE
Confidence 999663 3322 3678887666554
No 32
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=96.48 E-value=0.026 Score=42.33 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=61.6
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcE--EEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKT--VTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 159 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~--v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V 159 (214)
.+++.|.++|+|-..-+.+.+++|+. |+.+.|+ |. +|. +++++|++ . +++|+.|
T Consensus 11 pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~------De-TG~---------I~~tlW~~-~-------l~~Gdvv 66 (106)
T 2k75_A 11 LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE------DD-TAR---------IRISSFGK-Q-------LQDSDVV 66 (106)
T ss_dssp TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE------CS-SCE---------EEEEEESS-C-------CCTTEEE
T ss_pred CCCceEEEEEEEEEccccccccCCCeeEEEEEEEE------cC-CCe---------EEEEEEcC-c-------cCCCCEE
Confidence 35667888999888766666778874 7777776 33 563 89999998 3 9999999
Q ss_pred EEE-EEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecC
Q 028045 160 YVE-GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 197 (214)
Q Consensus 160 ~Ve-GrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~ 197 (214)
.|. |... .|.+ ..+|.+.+.|.|..++.
T Consensus 67 ~i~ng~v~--~~~g--------~~~L~v~~~~~I~~~~~ 95 (106)
T 2k75_A 67 RIDNARVA--QFNG--------YLSLSVGDSSRIESVNV 95 (106)
T ss_dssp EEEEEEEE--EETT--------EEEEEECTTSEEEECCS
T ss_pred EEEeeEEe--EECC--------EEEEEECCcEEEEECCC
Confidence 999 6665 4533 37788888888888763
No 33
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.39 E-value=0.011 Score=44.23 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=58.8
Q ss_pred EEEEEEEeCCCceEE--EecCC--cEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEE
Q 028045 86 KAIICGKVKDTPVQK--ILRNG--KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (214)
Q Consensus 86 kV~LiGrVg~dPelr--~t~nG--~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~V 161 (214)
.+.++|.|..--.++ .+++| ..++.+.|+ |. +| -+++++|++ .++. ...+++|+.|+|
T Consensus 18 ~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~------D~-TG---------~I~~t~w~~-~~~~-~~~l~~G~vv~i 79 (115)
T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIA------DD-TG---------ELRAVFWTE-NIKL-LKKFREGDVIRI 79 (115)
T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE------ET-TE---------EEEEEEETT-GGGG-GGTCCTTSEEEE
T ss_pred EeEEEEEEEECCCceEEEcCCCCEEEEEEEEEE------eC-CC---------eEEEEEeCc-hhhh-hhcCCCCCEEEE
Confidence 468999998874555 45677 688888777 22 34 389999998 6653 367999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEe
Q 028045 162 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 195 (214)
Q Consensus 162 eGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L 195 (214)
.|..-...|.+. .+|.+...+.|..+
T Consensus 80 ~g~~v~~~f~g~--------~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 80 KDVNIRGGFGGR--------KEAHLMPRSTVEVL 105 (115)
T ss_dssp EEEEECCCSSSS--------CEEEECTTCCEEEE
T ss_pred EeeEEccccCCe--------EEEEECCCceEEEC
Confidence 998744446432 56666645555554
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=96.33 E-value=0.019 Score=43.55 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=63.3
Q ss_pred ccEEEEEEEeCCCceEE--EecCCc-EEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEE
Q 028045 84 VHKAIICGKVKDTPVQK--ILRNGK-TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 84 mNkV~LiGrVg~dPelr--~t~nG~-~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~ 160 (214)
.+.+.++|.|-.--+.+ .+++|. .+..+.|+ |+ +|. +++++|+. .| ..++.|+.|+
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~------D~-TG~---------I~~tlW~~-~~----~~~~~G~vv~ 70 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG------DE-TGR---------VKLTLWGK-HA----GSIKEGQVVK 70 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE------ET-TEE---------EEEEEEGG-GT----TCCCTTCEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE------eC-CCE---------EEEEEECC-hh----hcCCCCCEEE
Confidence 44566788876654333 567886 77777776 32 442 89999998 55 3589999999
Q ss_pred EE-EEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCCCCCCCChhhhhc
Q 028045 161 VE-GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESISKISFDDLRE 211 (214)
Q Consensus 161 Ve-GrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~~~~~~s~~e~~~ 211 (214)
|. |++.. |. | ..+|.+.+.+.|..+.. .+-+..+||.+
T Consensus 71 i~~g~v~~--~~----g----~~qL~i~~~~~i~~~~~---~~~~~~~~l~~ 109 (119)
T 1o7i_A 71 IENAWTTA--FK----G----QVQLNAGSKTKIAEASE---DGFPESSQIPE 109 (119)
T ss_dssp EEEEEEEE--ET----T----EEEEEECTTCEEEECCC---TTCCCGGGSCC
T ss_pred EEeEEEEE--eC----C----EEEEEECCCEEEEEcCC---cCCCcHHHhhh
Confidence 99 77654 53 3 27788877777877642 33455666654
No 35
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.11 E-value=0.021 Score=42.87 Aligned_cols=83 Identities=19% Similarity=0.131 Sum_probs=56.6
Q ss_pred cEEEEEEEeCCCceEEEe--cCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEE
Q 028045 85 HKAIICGKVKDTPVQKIL--RNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (214)
Q Consensus 85 NkV~LiGrVg~dPelr~t--~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~Ve 162 (214)
+.+.++|+|-...+.+.. .+|.....+++... |. +| -+++++|++ .|+. .+++|+.|.|.
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~----D~-TG---------~IrvtlW~~-~a~~---~l~~Gdvv~i~ 76 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVR----DE-TG---------SIRVTLWDN-LTDI---DVGRGDYVRVR 76 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE----ET-TE---------EEEEEEEGG-GGGS---CCCTTCEEEEE
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----CC-CC---------cEEEEEECc-cccc---ccCCCCEEEEE
Confidence 679999999988777654 46765444444432 22 44 289999999 7764 79999999998
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCcEEE
Q 028045 163 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRL 194 (214)
Q Consensus 163 GrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~ 194 (214)
|+.+... .| .++|.+.+.+.|..
T Consensus 77 g~vk~~~-----~g----~~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 77 GYIREGY-----YG----GLECTANYVEILKK 99 (105)
T ss_dssp EEEEECT-----TS----SEEEEEEEEEEEEC
T ss_pred EEEEEcc-----CC----CEEEEeCCceEEEe
Confidence 8776652 12 25777774444443
No 36
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.04 Score=41.56 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=62.9
Q ss_pred ccccEEEEEEEeCCCceEEEecC--C-cEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCe
Q 028045 82 RGVHKAIICGKVKDTPVQKILRN--G-KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 158 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~n--G-~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~ 158 (214)
.++++..|.|||..-.++|...+ | ..+..|.|+ |. +| . +++++|++ +|+.....|+.|+.
T Consensus 12 p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~------De-~G-~--------I~at~~~~-~~~~f~~~l~eG~v 74 (114)
T 1ynx_A 12 PYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL------DT-SG-E--------IRATAFND-FATKFNEILQEGKV 74 (114)
T ss_dssp TTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE------ET-TE-E--------EEEEECHH-HHHHHHHHSCSSSE
T ss_pred CCCCceEEEEEEEEeccceEEecCCCCceEEEEEEE------CC-CC-e--------EEEEECHH-HHHHHHhhcccCcE
Confidence 45677889999999888877654 2 244555443 33 45 3 89999999 99999999999999
Q ss_pred EEEEE-EeEEe--eeecCCCCeEEEEEEEEEEeCCcEEEe
Q 028045 159 VYVEG-DIEIR--VYNDSINGEVKNIPEICIRRDGTLRLV 195 (214)
Q Consensus 159 V~VeG-rL~tr--~w~dk~dG~~r~~~eIvv~~~g~I~~L 195 (214)
++|.+ +++.. .|.. ....++|.....-.|+.+
T Consensus 75 y~Is~~~V~~a~~~y~~-----~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 75 YYVSKAKLQPAKPQFTN-----LTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp EEEESCEEEECCTTTSS-----SSSCEEEEECSSCEEEES
T ss_pred EEECCcEEEECCCCccc-----CCCCEEEEECCCCEEEEC
Confidence 99998 33221 2211 123567777655556655
No 37
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=93.99 E-value=0.22 Score=41.57 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=64.8
Q ss_pred ccccEEEEEEEeCCCceEEEecC--C-cEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCe
Q 028045 82 RGVHKAIICGKVKDTPVQKILRN--G-KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 158 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~n--G-~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~ 158 (214)
.+++...|.|||..--++|...+ | ..+..+.|+ |. +| . +++++|++ +|+.....|+.|+-
T Consensus 16 p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~------De-~G-~--------I~at~~~~-~~~~~~~~l~~G~v 78 (246)
T 1jmc_A 16 PYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV------DE-SG-E--------IRATAFNE-QVDKFFPLIEVNKV 78 (246)
T ss_dssp TTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE------CS-SC-E--------EEEEEEHH-HHHHHGGGCCTTCE
T ss_pred CCCCceEEEEEEEEecccceeeCCCCCceEEEEEEE------CC-CC-e--------EEEEEChH-HHHHhhhhcccCCE
Confidence 44566779999998877775532 2 234444433 33 45 3 89999998 99999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCC
Q 028045 159 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 198 (214)
Q Consensus 159 V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~ 198 (214)
++|.+ ...+.+..+ =-.....++|.......|..+...
T Consensus 79 y~i~~-~~v~~~~~~-y~~~~~~~ei~~~~~T~I~~~~~~ 116 (246)
T 1jmc_A 79 YYFSK-GTLKIANKQ-FTAVKNDYEMTFNNETSVMPCEDD 116 (246)
T ss_dssp EEEEC-CEEEECCGG-GCCCCCSEEEECCTTCEEEECCSC
T ss_pred EEECC-CEEEEcccC-cccCCCCEEEEEcCCcEEEEccCc
Confidence 99998 333333221 111223578887766777777554
No 38
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=92.46 E-value=0.9 Score=34.71 Aligned_cols=79 Identities=8% Similarity=0.184 Sum_probs=51.3
Q ss_pred ccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHH--HHHhhcCCCCeEEE
Q 028045 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS--YAVKQLVKNSSVYV 161 (214)
Q Consensus 84 mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe--~~~~~LkKGd~V~V 161 (214)
++.|.|+|.|-.- .....++.|.|. |. +|. -+.|..|.. ..+ .-...++.|+.|.|
T Consensus 31 i~~V~iVG~V~~~------~~~~~~~~~~ld------D~-TG~--------~I~~~~W~~-~~~~~~~~~~~~~g~yVrV 88 (132)
T 3kdf_D 31 ISQVTIVGIIRHA------EKAPTNIVYKID------DM-TAA--------PMDVRQWVD-TDDTSSENTVVPPETYVKV 88 (132)
T ss_dssp CCEEEEEEEEEEE------EECSSEEEEEEE------CS-SSS--------CEEEEEEC----------CCCCTTCEEEE
T ss_pred EEEEEEEEEEEEE------EEcCCeEEEEEE------CC-CCC--------EEEEEEEcc-CCCcccccccccCCCEEEE
Confidence 8899999998763 234567777776 33 562 277888876 322 22567999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecC
Q 028045 162 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 197 (214)
Q Consensus 162 eGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~ 197 (214)
.|+++. |.+ + ..|.+. .|+.+..
T Consensus 89 ~G~l~~--f~g----~----~qi~~~---~ir~v~d 111 (132)
T 3kdf_D 89 AGHLRS--FQN----K----KSLVAF---KIMPLED 111 (132)
T ss_dssp EEEEEE--ETT----E----EEEEEE---EEEECSS
T ss_pred EEEEEe--ECC----E----EEEEEE---EEEEcCC
Confidence 999887 533 2 346666 6777643
No 39
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.26 E-value=0.62 Score=35.82 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=52.4
Q ss_pred cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHH---HHhhcCCCCeE
Q 028045 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSY---AVKQLVKNSSV 159 (214)
Q Consensus 83 ~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~---~~~~LkKGd~V 159 (214)
-++.|.|+|.|-.- ..+..++.|.|. |. +|. +.|..|.. ..+. -...++.|+.|
T Consensus 35 ~i~~V~iVG~V~~~------~~~~~~~~~~ld------D~-TG~---------I~~~~W~~-~~~~~~~~~~~~~~g~yV 91 (136)
T 4gop_B 35 ELGQLTFVAVVRNI------SRNATNVAYSVE------DG-TGQ---------IEVRQWLD-SSSDDSSKASEIRNNVYV 91 (136)
T ss_dssp BCCEEEEEEEEEEE------EECSSEEEEEEE------CS-SCE---------EEEEEECC---------CCSCCTTCEE
T ss_pred EEEEEEEEEEEEEE------EecCCeEEEEEE------CC-CCC---------EEEEEecc-cCCcccccccccCCCCEE
Confidence 38999999998763 234567778775 33 453 78888986 3321 24579999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEec
Q 028045 160 YVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVK 196 (214)
Q Consensus 160 ~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~ 196 (214)
.|.|+++. |.+ + .+|.+. .|+++.
T Consensus 92 rV~G~v~~--f~g----~----~qi~~~---~ir~v~ 115 (136)
T 4gop_B 92 RVLGTLKS--FQN----R----RSISSG---HMRPVI 115 (136)
T ss_dssp EEEEEEEE--ETT----E----EEEEES---EEEECS
T ss_pred EEEEEEEE--eCC----E----EEEEEE---EEEECC
Confidence 99999966 533 2 356666 666663
No 40
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=91.54 E-value=2.1 Score=43.71 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=56.9
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChh-HHHHHHhhcCCCCeEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEI-LGSYAVKQLVKNSSVY 160 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~-lAe~~~~~LkKGd~V~ 160 (214)
..+..|+|.|.|-. -+.|.+++|+.+..|.|. . .|+-+.|..|-+. ....+.+.+++|+-|.
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t--d--------------~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~ 77 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKIT--D--------------YTNSILVKMFSRDKEDAELMSGVKKGMWVK 77 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE--C--------------SSCEEEEEEECSSHHHHHHHHTCCTTCEEE
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEEE--e--------------CCCCEEEEEeecccchHHHHhcCCCCCEEE
Confidence 34678999999887 788899999998888874 1 2334788888541 2233567799999999
Q ss_pred EEEEeEEeeeec
Q 028045 161 VEGDIEIRVYND 172 (214)
Q Consensus 161 VeGrL~tr~w~d 172 (214)
|.|.+++..|..
T Consensus 78 ~~g~~~~d~~~~ 89 (1041)
T 3f2b_A 78 VRGSVQNDTFVR 89 (1041)
T ss_dssp EEEEEEEETTTT
T ss_pred EEEEEEeccCCc
Confidence 999999998854
No 41
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=90.01 E-value=1.9 Score=39.20 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=63.8
Q ss_pred ccccEEEEEEEeCCCceEEEecC--C-cEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCe
Q 028045 82 RGVHKAIICGKVKDTPVQKILRN--G-KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 158 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~n--G-~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~ 158 (214)
.++++..|.|||..--.+|...+ | ..+..|.|+ |. +| -+++++|++ +++.....|+.|+-
T Consensus 11 p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~------De-~G---------~I~at~~~~-~~~~f~~~l~eG~v 73 (444)
T 4gop_C 11 PYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL------DD-SG---------EIKATGFND-AVDRFYPLLQENHV 73 (444)
T ss_dssp TTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE------CS-SC---------EEEEEEETH-HHHHHTTTCCTTCE
T ss_pred CCCcceEEEEEEEEccCcceecCCCCCceEEEEEEE------cC-CC---------EEEEEEeHH-HHHHHHHheecCCE
Confidence 45667789999998766666543 3 244444443 32 35 389999999 99999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecC
Q 028045 159 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 197 (214)
Q Consensus 159 V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~ 197 (214)
++|.+ ...+.+..+ =-.....++|.......|..+..
T Consensus 74 y~Is~-~~V~~~~~~-y~~~~~~~ei~~~~~T~V~~~~d 110 (444)
T 4gop_C 74 YLISK-ARVNIAKKQ-FSNLQNEYEITFENSTEIEECTD 110 (444)
T ss_dssp EEEES-CEEEECCGG-GCSCCCSEEEEECTTCEEEECSC
T ss_pred EEEcC-CEEEecCCc-cccCCCCEEEEEcCCcEEEEccC
Confidence 99998 233333221 00122346888876667777754
No 42
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=86.61 E-value=2.9 Score=35.78 Aligned_cols=79 Identities=8% Similarity=0.179 Sum_probs=50.7
Q ss_pred cccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHH--HHHhhcCCCCeEE
Q 028045 83 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS--YAVKQLVKNSSVY 160 (214)
Q Consensus 83 ~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe--~~~~~LkKGd~V~ 160 (214)
-++.|.|+|.|-.- ..+..++.|.|. |. +|. -+.|.+|.. ..+ .-...++.|+.|.
T Consensus 70 ~i~~V~ivG~V~~i------~~~~~~~~~~L~------D~-TG~--------~I~~k~W~~-~~~~~~~~~~~~~G~yVr 127 (270)
T 2pi2_A 70 EISQVTIVGIIRHA------EKAPTNIVYKID------DM-TAA--------PMDVRQWVD-TDDTSSENTVVPPETYVK 127 (270)
T ss_dssp EESEEEEEEEEEEE------EECSSEEEEEEE------CS-SSS--------CEEEEEECC--------CCCCCTTCEEE
T ss_pred EEEEEEEEEEEEEE------EeccceEEEEEE------CC-CCC--------EEEEEEEcC-cCcccchhhcCCCCCEEE
Confidence 47889999998662 224577777775 33 452 277888875 322 1245699999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEec
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVK 196 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~ 196 (214)
|.|+++. |.+ + ..|.+. .|+++.
T Consensus 128 V~G~v~~--f~g----~----~qi~i~---~ir~v~ 150 (270)
T 2pi2_A 128 VAGHLRS--FQN----K----KSLVAF---KIMPLE 150 (270)
T ss_dssp EEEEEEE--ETT----E----EEEEEE---EEEECS
T ss_pred EEEEEEe--cCC----e----eEEEEE---EEEecC
Confidence 9999885 533 2 346665 566653
No 43
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=84.69 E-value=10 Score=28.06 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=57.8
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 161 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~V 161 (214)
-++|.|.|.|.|-. .+-..+ + +-|-|....... =|+. .-|+|+-+-+-|+ +|=.+.+|.+|=..+.|
T Consensus 6 gMLN~V~LEG~IeS---~kWS~k-K--TGF~VTIkQkR~---FGer---~FTDyyViYAN~Q-L~~ELEky~~k~k~isi 72 (110)
T 2hql_A 6 GMLNRVFLEGEIES---SCWSVK-K--TGFLVTIKQMRF---FGER---LFTDYYVIYANGQ-LAYELEKHTKKYKTISI 72 (110)
T ss_dssp -CCEEEEEEEEEEE---EEECTT-C--SEEEEEEEEEEE---ETTE---EEEEEEEEEEEHH-HHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEEeeeeeh---hccccc-C--ceEEEEEeehhh---hccc---cceeEEEEEECCe-eehhHHHhhhhceEEEE
Confidence 35899999998854 222222 1 223333332211 1443 4799999999998 99999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEE
Q 028045 162 EGDIEIRVYNDSINGEVKNIPEI 184 (214)
Q Consensus 162 eGrL~tr~w~dk~dG~~r~~~eI 184 (214)
+|.|++..=. + .+.-.+..++
T Consensus 73 eG~L~TY~ek-k-S~iWKTtI~~ 93 (110)
T 2hql_A 73 EGILRTYLER-K-SEIWKTTIEI 93 (110)
T ss_dssp EEEEEEEEET-T-TTEEEEEEEE
T ss_pred eeehhhHHHH-h-cccceeEEEE
Confidence 9999886432 3 5654444433
No 44
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=84.12 E-value=7.7 Score=28.57 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=52.3
Q ss_pred ccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEE-
Q 028045 84 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE- 162 (214)
Q Consensus 84 mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~Ve- 162 (214)
...|.++|+|-..-+ ..++..+....|+ |. +|. +++++|++. ....++.|+.|.|.
T Consensus 15 ~~~v~v~~~V~~~~~---~~~~~~~~~~~l~------De-TG~---------I~~t~W~~~----~~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 15 GQWANLKAKVIQLWE---NTHESISQVGLLG------DE-TGI---------IKFTIWKNA----ELPLLEQGESYLLRS 71 (109)
T ss_dssp TCEEEEEEEEEEEEE---CCCSSEEEEEEEE------CT-TCC---------EEEEEEGGG----CCCCCCTTCEEEEEE
T ss_pred CCcEEEEEEEEEeEc---CCCCeEEEEEEEE------CC-CCe---------EEEEEECcc----cccccCCCCEEEEEE
Confidence 456778888866422 2345555444443 33 564 899999962 23579999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEec
Q 028045 163 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVK 196 (214)
Q Consensus 163 GrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~ 196 (214)
|..+. |.+ ..+|.+.+.+.|..++
T Consensus 72 ~~v~~--~~G--------~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 72 VVVGE--YND--------RFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEEE--ETT--------EEEEEECSSSEEEECS
T ss_pred EEEEE--ECC--------EEEEEECCceEEEECC
Confidence 66655 533 3677777677777764
No 45
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=79.15 E-value=10 Score=34.74 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=54.8
Q ss_pred CCCCCCCCcc-----ccccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeC--
Q 028045 70 PQGVDPRRGW-----GFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN-- 142 (214)
Q Consensus 70 ~~~~~~~~~~-----~m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~g-- 142 (214)
-||-|.|-.. .+..+-.+.+.|.|...|... +.|..+ |++... .+ -++|++|.
T Consensus 265 NQgTD~Hl~~~~~i~~~~~~~~~~v~G~V~~~P~~~--~GGHV~--f~l~d~-------~~---------~i~c~ayept 324 (402)
T 3au7_A 265 NHATDMHLIGEEEVHRLENYRSYRLRGRVTLEPYDI--EGGHVF--FEIDTK-------FG---------SVKCAAFEPT 324 (402)
T ss_dssp CTTSCTTEEEGGGCSSCCTTCEEEEEEEEEEEEEEE--TTTEEE--EEEEET-------TE---------EEEEEECGGG
T ss_pred cCCchHHhcccccccccccCceEEEEEEEecCcEec--cCceEE--EEEEcC-------CC---------EEEEEEEccc
Confidence 6777766333 446778899999999988873 456544 444421 11 38999999
Q ss_pred hhHHHHHHhhcCCCCeEEEEEEeE
Q 028045 143 EILGSYAVKQLVKNSSVYVEGDIE 166 (214)
Q Consensus 143 k~lAe~~~~~LkKGd~V~VeGrL~ 166 (214)
+ ....+.+.|.+||.|.|-|.+.
T Consensus 325 k-~fr~~vr~L~~GD~V~v~G~v~ 347 (402)
T 3au7_A 325 K-QFRNVIRLLRKGDVVEVYGSMK 347 (402)
T ss_dssp T-THHHHHTTCCTTCEEEEEEEEE
T ss_pred h-HHHHHHhcCCCCCEEEEEEeec
Confidence 4 4567888999999999999943
No 46
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=77.36 E-value=6.4 Score=31.03 Aligned_cols=85 Identities=9% Similarity=0.140 Sum_probs=54.8
Q ss_pred cccEEEEEEEeCCCceEE---Ee--cCC--------cEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHH
Q 028045 83 GVHKAIICGKVKDTPVQK---IL--RNG--------KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYA 149 (214)
Q Consensus 83 ~mNkV~LiGrVg~dPelr---~t--~nG--------~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~ 149 (214)
+++.+.|+|+|-..-..+ .+ .+| ..++...|| |. +| -+++++|++ .++
T Consensus 25 g~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVg------De-TG---------~I~ftlW~e-~~~-- 85 (145)
T 1wjj_A 25 GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG------DE-TG---------CILFTARND-QVD-- 85 (145)
T ss_dssp TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE------CS-SC---------EEEEEECTT-HHH--
T ss_pred CCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEE------cC-Cc---------EEEEEEecC-CcC--
Confidence 455566788776643332 11 123 246665555 22 45 389999998 665
Q ss_pred HhhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecC
Q 028045 150 VKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 197 (214)
Q Consensus 150 ~~~LkKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~ 197 (214)
.+++||.|.|.+-.- +.|.+ ..+|.+.+.|.|+.++.
T Consensus 86 --~l~~Gd~v~i~na~v-~~~~G--------~~~L~vgk~g~Ie~~~e 122 (145)
T 1wjj_A 86 --LMKPGATVILRNSRI-DMFKG--------TMRLGVDKWGRIEATGA 122 (145)
T ss_dssp --HTCTTCEEEEEEEEE-EEETT--------EEEEEECTTCCBCCCSC
T ss_pred --cCCCCCEEEEeccEE-EeECC--------EEEEEECCCEEEEECCC
Confidence 478999999987433 24643 37888888888888764
No 47
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=75.96 E-value=4.5 Score=42.02 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=29.2
Q ss_pred EEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEEEEe
Q 028045 86 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDI 165 (214)
Q Consensus 86 kV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~VeGrL 165 (214)
.|.+.|-|.. -..+.|++|..++.+++.- . +|. +.|++|.+ .-+.....|..+..|+|.|++
T Consensus 1044 ~v~v~G~v~~-~~~~~Tk~G~~maf~tleD------~-tg~---------~evvvf~~-~~~~~~~~l~~~~~~~v~G~v 1105 (1220)
T 2hpi_A 1044 KVLLSGMVEE-VVRKPTRSGGMMARFTLSD------E-TGA---------LEVVVFGR-AYEGVSPKLKEDIPLLVLAEV 1105 (1220)
T ss_dssp EEEEEEEECC-C------------CEEEEE------T-TEE---------EEEC--------------CTTCEEEEEEEE
T ss_pred eEEEEEEEEE-EEEeecCCCCeEEEEEEEE------C-CCC---------EEEEEcHH-HHHHHHHHhccCCEEEEEEEE
Confidence 4777777765 5555678898888888762 2 342 78999999 677778889999999999999
Q ss_pred EE
Q 028045 166 EI 167 (214)
Q Consensus 166 ~t 167 (214)
+.
T Consensus 1106 ~~ 1107 (1220)
T 2hpi_A 1106 EK 1107 (1220)
T ss_dssp C-
T ss_pred EE
Confidence 74
No 48
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=73.48 E-value=21 Score=28.37 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=52.0
Q ss_pred ccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHH--HHHHhhcCCCCeE
Q 028045 82 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILG--SYAVKQLVKNSSV 159 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lA--e~~~~~LkKGd~V 159 (214)
.-++.|.|+|.|..--+ . . ..+.|+|- |. +|. -+.|++|-+..+ ......+..|+.|
T Consensus 45 ~PI~~V~IvGiVv~~~~---~-~--~~~~ytID------D~-TG~--------~I~cv~w~~~~~~~~~~~~~l~~G~~V 103 (159)
T 3kf6_A 45 FPIRWIQIVGYIAAIDI---Y-E--GKHVLTVD------DC-SGM--------VLRVVFIIQDDFSMSKRAISMSPGNVV 103 (159)
T ss_dssp EEECEEEEEEEEEEEEE---E-T--TEEEEEEE------CS-SSC--------EEEEEEEGGGCHHHHHHHTTCCTTCEE
T ss_pred eEEEEEEEEEEEEEEEE---e-C--CEEEEEEe------cC-CCC--------eEEEEEEccCCCCcccccccCCCCCEE
Confidence 34889999999987321 1 1 12333332 22 453 488999987212 2334458999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecC
Q 028045 160 YVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 197 (214)
Q Consensus 160 ~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~ 197 (214)
.|.|.+++. .++ .+|.|. +|..++.
T Consensus 104 rV~G~v~~f--r~~--------rqI~~~---~i~~v~d 128 (159)
T 3kf6_A 104 CVFGKINSF--RSE--------VELIAQ---SFEELRD 128 (159)
T ss_dssp EEEEEEECS--SSS--------CEEEEE---EEEEECS
T ss_pred EEEEEEEee--CCE--------EEEEEE---EEEECCC
Confidence 999999764 332 357777 7777764
No 49
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=72.48 E-value=8.1 Score=32.64 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=41.0
Q ss_pred ceEEEEEEeChhHHHHHHhhcCCCCeEEEEEEeEEeeee--cCCCCeEEEEEEEEEEeCCcEEEecC
Q 028045 133 VQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYN--DSINGEVKNIPEICIRRDGTLRLVKS 197 (214)
Q Consensus 133 t~W~~V~~~gk~lAe~~~~~LkKGd~V~VeGrL~tr~w~--dk~dG~~r~~~eIvv~~~g~I~~L~~ 197 (214)
+.-+.|.+.++ + .+.+++||+|.|.|-++..... .+ .+...+.+.|.|. .|+.+++
T Consensus 210 Prsi~v~l~~d-L----vd~~~PGDrV~vtGI~~~~~~~~~~~-~~~~~~~~yl~an---~I~~~~~ 267 (268)
T 2vl6_A 210 PRQLEIILEDD-L----VDSARPGDRVKVTGILDIKQDSPVKR-GSRAVFDIYMKVS---SIEVSQK 267 (268)
T ss_dssp CCEEEEEEEGG-G----TTSSCTTCEEEEEEEEEEECSSTTCC-SSCCEEEEEEEEE---EEEEC--
T ss_pred CcEEEEEEccC-c----cCcccCCCEEEEEEEEEEeecccccC-CCceEEEEEEEEE---EEEEecc
Confidence 45688888887 4 5689999999999999877543 22 3456777888888 8887643
No 50
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=71.66 E-value=4.1 Score=34.87 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=38.1
Q ss_pred ceEEEEEEeChhHHHHHHhhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCC
Q 028045 133 VQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGE 199 (214)
Q Consensus 133 t~W~~V~~~gk~lAe~~~~~LkKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~ 199 (214)
+.-+.|.+.++ +.+.+++||+|.|.|-+.... .. +...+.+.|.|. .|+..+...
T Consensus 197 Prsi~V~l~~d-----Lvd~~~PGDrV~vtGI~~~~~-~~---~~~~~~~~l~a~---~I~~~~~~~ 251 (279)
T 1ltl_A 197 PRQITVVLEDD-----LVDTLTPGDIVRVTGTLRTVR-DE---RTKRFKNFIYGN---YTEFLEQEF 251 (279)
T ss_dssp CCEEEEEEEGG-----GTTCCCTTCEEEEEEEEEEEE-ET---TTTEEEEEEEEE---ECCBC----
T ss_pred CeEEEEEEccc-----ccCccCCCCEEEEEEEEEEee-CC---CCceEEEEEEEE---EEEEecCcc
Confidence 45678888887 456899999999999998773 32 344677778887 676665443
No 51
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=56.93 E-value=14 Score=25.73 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=26.4
Q ss_pred EeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCC
Q 028045 164 DIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGE 199 (214)
Q Consensus 164 rL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~ 199 (214)
--+.|.|+|. +|.-+-.++++.=.+|+|++.....
T Consensus 2 p~k~RtWtDr-tG~F~VeA~flg~~dgki~LhK~nG 36 (68)
T 2hbp_A 2 SKKSRLWVDR-SGTFKVDAEFIGCAKGKIHLHKANG 36 (68)
T ss_dssp -CCSEEEEBS-SSCCEEEEEEEEEETTEEEEECTTS
T ss_pred CccccEEEcC-CCCeEEEEEEEEEeCCEEEEEecCC
Confidence 3467999999 9986767777655699999986543
No 52
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=51.60 E-value=11 Score=29.74 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.2
Q ss_pred EEEEEEeChhHHHHHHhhcCCCCeEEEE
Q 028045 135 WHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (214)
Q Consensus 135 W~~V~~~gk~lAe~~~~~LkKGd~V~Ve 162 (214)
-++|++|.. .|.++.+.|+.|+-|.+.
T Consensus 66 tlqVtlwd~-ha~~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 66 SIRCILWDE-HDFYCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEECHH-HHHHHTTTCCTTCEEEEE
T ss_pred EEEEEEECc-HHHHHHhhCCCCCEEEEE
Confidence 479999999 999999999999999864
No 53
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=50.54 E-value=41 Score=25.15 Aligned_cols=75 Identities=15% Similarity=0.341 Sum_probs=48.1
Q ss_pred cccccEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEE
Q 028045 81 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 160 (214)
Q Consensus 81 m~~mNkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~ 160 (214)
|..=..|+|.|+|.+- .. +..|. |+|. +|+ +.|.+=.+ ...-+.+.++++|.
T Consensus 34 ~~Dd~~V~L~G~Iv~~-----~~-~d~Y~---------F~D~-TG~---------I~VeId~~---~w~g~~v~p~~~Vr 85 (109)
T 1nnx_A 34 LRDDTWVTLRGNIVER-----IS-DDLYV---------FKDA-SGT---------INVDIDHK---RWNGVTVTPKDTVE 85 (109)
T ss_dssp SCSSEEEEEEEEEEEE-----EE-TTEEE---------EEET-TEE---------EEEECCGG---GSTTCCCCTTSCEE
T ss_pred CcCCCeEEEEEEEEEE-----eC-CCeEE---------EECC-Ccc---------EEEEEChh---hcCCcccCCCCEEE
Confidence 3445689999999762 22 23333 5665 564 56665333 12345799999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEec
Q 028045 161 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVK 196 (214)
Q Consensus 161 VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~ 196 (214)
|.|.+.. .|. .++|-|+ .|+.|.
T Consensus 86 i~GevDk-d~~---------~~eIdV~---~i~~~~ 108 (109)
T 1nnx_A 86 IQGEVDK-DWN---------SVEIDVK---QIRKVN 108 (109)
T ss_dssp EEEEEEE-ETT---------EEEEEEE---EEEEC-
T ss_pred EEEEECC-CCC---------ceEEEEE---EEEEcc
Confidence 9999983 342 2578888 788763
No 54
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=48.45 E-value=39 Score=27.57 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=40.2
Q ss_pred EEEEEEEeCCCceEEE--ec-CCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEE
Q 028045 86 KAIICGKVKDTPVQKI--LR-NGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 162 (214)
Q Consensus 86 kV~LiGrVg~dPelr~--t~-nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~Ve 162 (214)
-|-++|.|..--.++. .+ +|+......+... |. +|. -++|++||+ .|+.+. ...|+.|.+.
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~----D~-sg~--------~i~~tLWg~-~a~~~~--~~~~~vv~i~ 203 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLM----DT-SGK--------VVTATLWGE-DADKFD--GSRQPVLAIK 203 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEE----CT-TCC--------EEEEEEEHH-HHHHCC--CTTCCEEEEE
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEE----CC-CCC--------EEEEEEEch-hhhhcc--cCCCCEEEEE
Confidence 4678888875433332 22 5665444443322 22 343 389999999 887553 5778877766
Q ss_pred EEeEEeee
Q 028045 163 GDIEIRVY 170 (214)
Q Consensus 163 GrL~tr~w 170 (214)
|- +...|
T Consensus 204 ~~-~v~~f 210 (246)
T 1jmc_A 204 GA-RVSDF 210 (246)
T ss_dssp EE-EEECT
T ss_pred EE-EEEec
Confidence 64 34445
No 55
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=43.80 E-value=2.1e+02 Score=26.93 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=63.4
Q ss_pred cccccccccccccccCCCC-CCCCcccc-ccc------cEEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCc
Q 028045 55 DDVFDDFVVEKQELQPQGV-DPRRGWGF-RGV------HKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGS 126 (214)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~-~~~~~~~m-~~m------NkV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge 126 (214)
++...+.++.-|.+|-|.. -+.+.|.. ..+ ..|.|.|+|-. .|. .| .++ |-+-- +. +|
T Consensus 25 ~~~~~~~yg~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~---~R~--~g-kl~-Fi~Lr-----D~-~g- 90 (548)
T 3i7f_A 25 ELVSGENFKVMPMHQSQPCYKTGLKYTEIEELVPAMAEKTVTIRARVQA---VRG--KG-NMV-FLFLR-----KG-IY- 90 (548)
T ss_dssp CCCCCSSEEECCCCSSCGGGCCCCCBCCGGGCSGGGTTCEEEEEEEEEE---EEE--CS-SEE-EEEEE-----ET-TE-
T ss_pred cchhhhhcCcCccccccccccCCCceEEhhhcchhcCCCEEEEEEEEEE---Eec--CC-CeE-EEEEE-----EC-Ce-
Confidence 3445556666666664411 12222321 111 36899999965 233 23 223 32221 11 12
Q ss_pred ccCCCCceEEEEEEeC-----hhHHHHHHhhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCC
Q 028045 127 KDLPKPVQWHRIAVHN-----EILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 198 (214)
Q Consensus 127 ~~~~~~t~W~~V~~~g-----k~lAe~~~~~LkKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~ 198 (214)
-++|++-. +... ...+.|..|+.|.|+|.+..+.=.. .+.+.-..||.|+ +|..|.+.
T Consensus 91 --------~iQ~v~~~~~~~~~~~~-~~~~~l~~es~V~V~G~v~~~~~~~--~~~~~~~~El~~~---~i~vls~a 153 (548)
T 3i7f_A 91 --------TCQALVMKSETISKEFV-QFCQKISAESICDITGIVKAVEKPI--EKATQQDVEIHVT---SIAVVSLA 153 (548)
T ss_dssp --------EEEEEEECSSSSCHHHH-HHHHTCCTTEEEEEEEEEEECSSCC--TTSSSCSEEEEEE---EEEEEECC
T ss_pred --------eEEEEEECCCccCHHHH-HHHhCCCCCCEEEEEEEEEeCCccc--ccCCCCcEEEEEe---EEEEEecC
Confidence 36666654 2122 2356799999999999998764211 1222234889998 89988765
No 56
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=32.78 E-value=43 Score=27.53 Aligned_cols=90 Identities=9% Similarity=0.081 Sum_probs=50.0
Q ss_pred EEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhhcCCCCeEEEEEEe
Q 028045 86 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDI 165 (214)
Q Consensus 86 kV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~LkKGd~V~VeGrL 165 (214)
...++|-|......+.+.+|+.|..+.|..=. +. ...+.+.+||+...+ ...+..|+.|.|-
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~------~~-------~~~V~lfLFg~a~~~--~~k~~~G~ViaiL--- 118 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK------DL-------DKYISLFLFGDVHKE--HWKTDQGTVIGLL--- 118 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSS------ST-------TCCEEEEECHHHHHH--HTTCCTTEEEEEE---
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecC------CC-------CcEEEEEEechHHHH--hcCcCCceEEEEE---
Confidence 45688989888888888899998877776332 11 124899999983333 3469999998874
Q ss_pred EEeeeecCCCCeEEEEEEEEEEeCCcEEEec
Q 028045 166 EIRVYNDSINGEVKNIPEICIRRDGTLRLVK 196 (214)
Q Consensus 166 ~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~ 196 (214)
-...+.++ +|... ..|.++....|-.|+
T Consensus 119 NP~i~~~~-~~~~~--~sLsv~~~~~Il~IG 146 (200)
T 3ebe_A 119 NANPMKPK-EGTDE--VCLSVDNPQKVLLMG 146 (200)
T ss_dssp SCEECCCC-TTCCC--EEEECSSGGGEEEEE
T ss_pred CCEEccCC-CCCcc--eEEEECCcccEEEEE
Confidence 33345554 44322 234443333444443
No 57
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=31.76 E-value=1.5e+02 Score=21.54 Aligned_cols=42 Identities=26% Similarity=0.205 Sum_probs=25.5
Q ss_pred hcCCCC-eEEEEEEeEE----eeeecCCCCeEEEEEEEEEEeCCcEEE
Q 028045 152 QLVKNS-SVYVEGDIEI----RVYNDSINGEVKNIPEICIRRDGTLRL 194 (214)
Q Consensus 152 ~LkKGd-~V~VeGrL~t----r~w~dk~dG~~r~~~eIvv~~~g~I~~ 194 (214)
.|+.|+ .|-+.|.+.. +.|+.+ +|...+..-++++..|.|.+
T Consensus 7 dL~~~~~~v~~~~~V~~~~~~~~~~~k-~G~~~~~~~~l~D~TG~I~~ 53 (119)
T 1o7i_A 7 NLKPNMESVNVTVRVLEASEARQIQTK-NGVRTISEAIVGDETGRVKL 53 (119)
T ss_dssp GCCTTCSSEEEEEEEEEECCCEEECCT-TCCEEEEEEEEEETTEEEEE
T ss_pred HCcCCCCcEEEEEEEEECCCCeeEEec-CCCEEEEEEEEEeCCCEEEE
Confidence 466676 5777777644 456666 77634444445566676665
No 58
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=29.88 E-value=1e+02 Score=21.80 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=28.1
Q ss_pred hhcCCCCeEEEEEEeEE----eeeecCCCCeEEEEEEEE-EEeCCcEEEe
Q 028045 151 KQLVKNSSVYVEGDIEI----RVYNDSINGEVKNIPEIC-IRRDGTLRLV 195 (214)
Q Consensus 151 ~~LkKGd~V~VeGrL~t----r~w~dk~dG~~r~~~eIv-v~~~g~I~~L 195 (214)
..|++|+.|-|.|++.. +.|..+ +|......++. .+..|.|++-
T Consensus 6 ~dl~~g~~v~i~~~V~~~~~~r~~~~~-~G~~~~v~~~~l~DeTG~I~~t 54 (97)
T 3e0e_A 6 SELMPNLSGTINAEVVTAYPKKEFSRK-DGTKGQLKSLFLKDDTGSIRGT 54 (97)
T ss_dssp GGCCTTEEEEEEEEEEEECCCEEEC-----CCEEEEEEEEEETTEEEEEE
T ss_pred HHCCCCCcEEEEEEEEECCCceEEEcC-CCCeeEEEEEEEECCCCcEEEE
Confidence 35889999999998754 457676 78654555554 4578888774
No 59
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=28.04 E-value=1.6e+02 Score=24.68 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=55.9
Q ss_pred ccccEEEEEEEeCCCceEEEec---CCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHHHHHhh-----c
Q 028045 82 RGVHKAIICGKVKDTPVQKILR---NGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQ-----L 153 (214)
Q Consensus 82 ~~mNkV~LiGrVg~dPelr~t~---nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe~~~~~-----L 153 (214)
.-+++|-|+|.|...-.. ... +...++.|+|- |. +|. ...+.|.+--. .+.... .
T Consensus 83 hPI~~V~IvG~VVg~~~k-~~r~~~~~~~~~~l~ID------Ds-SG~------~s~i~~k~~~~---~~~~~gl~l~~~ 145 (220)
T 3kf8_A 83 YPVNQINIFGKIVYEQYK-EKEFNGVEESYVILVIS------DF-IGI------DSKIRVRLSQE---QFKEVGLTLDKK 145 (220)
T ss_dssp EEECEEEEEEEEEEEEEE-CCBCSSCBCCEEEEEEE------CC-CSS------SCEEEEEEEHH---HHHTTTCCTTSC
T ss_pred cccEEEEEEEEEEEEEEE-eccccccccceEEEEEe------CC-CCC------CceEEEEecHH---HhhccCcccccc
Confidence 458999999999885332 222 22345555543 22 453 23455655332 333322 2
Q ss_pred CCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCC
Q 028045 154 VKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 198 (214)
Q Consensus 154 kKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~ 198 (214)
-.|..|.|.|.+.+.. +..+...+..-||.|+ +|.+|+..
T Consensus 146 ~~G~iV~VkG~i~~~r--~~~~~~~~~~rei~ve---~i~vl~~~ 185 (220)
T 3kf8_A 146 NYGKIVELEGEIYNWY--DSINVSKKPDRELKVS---KITVLSHR 185 (220)
T ss_dssp CTTCEEEEEEEEEECC--CSTTTTSCCCEEEEEE---EEEEEESS
T ss_pred CCCeEEEEEEEEEeec--cccccccccceEEEEE---EEEEeccC
Confidence 3699999999998742 2112222334489999 99999776
No 60
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=25.91 E-value=1.3e+02 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=20.2
Q ss_pred HhhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEE
Q 028045 150 VKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICI 186 (214)
Q Consensus 150 ~~~LkKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv 186 (214)
-..+..||.|.|.||++... +|+..+.--..+
T Consensus 51 pd~v~~GDivTvsgri~~ke-----~G~y~nyNf~fp 82 (119)
T 2wkd_A 51 PDFIQMGDTVTVSGRVQAKE-----SGEYVNYNFVFP 82 (119)
T ss_dssp CTTCCTTCEEEEEEEEEEC-----------CEEEEEE
T ss_pred cccccCCcEEEEeceeeeec-----cCceEeeeeecc
Confidence 35799999999999998864 576665544444
No 61
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=25.67 E-value=43 Score=22.05 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=21.4
Q ss_pred EEEEEeChhHHHHHHhhcC---------------CCCeEEEEEEeEEee
Q 028045 136 HRIAVHNEILGSYAVKQLV---------------KNSSVYVEGDIEIRV 169 (214)
Q Consensus 136 ~~V~~~gk~lAe~~~~~Lk---------------KGd~V~VeGrL~tr~ 169 (214)
+.+++.-+..|+..+..|- .||.|.|+|+|+--+
T Consensus 6 isitartkkeaekfaailikvfaelgyndinvtwdgdtvtvegqleggs 54 (62)
T 2gjh_A 6 ISITARTKKEAEKFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGS 54 (62)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCC
T ss_pred EEEEecchhHHHHHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCc
Confidence 4555555556655443332 399999999986544
No 62
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=25.06 E-value=1.7e+02 Score=20.75 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=28.9
Q ss_pred hhcCCCCeEEEEEEeEEe----eeecCCCCeEEEEEEE-EEEeCCcEEEe
Q 028045 151 KQLVKNSSVYVEGDIEIR----VYNDSINGEVKNIPEI-CIRRDGTLRLV 195 (214)
Q Consensus 151 ~~LkKGd~V~VeGrL~tr----~w~dk~dG~~r~~~eI-vv~~~g~I~~L 195 (214)
..|++|+.|-|.|.+..- +|+.+ +|......++ +++..|.|.+-
T Consensus 11 ~~L~~g~~v~i~~~V~~~~~~~~~~~k-~G~~~~~~~~~l~D~TG~I~~t 59 (115)
T 2k50_A 11 SKLEEGAETPVTGRVMKISSPRTFTTR-KGREGKLANVIIADDTGELRAV 59 (115)
T ss_dssp TTCCTTCEEEEEEEEEEECCCEECCCT-TSSCCEEEEEEEEETTEEEEEE
T ss_pred HHCCCCCEeEEEEEEEECCCceEEEcC-CCCEEEEEEEEEEeCCCeEEEE
Confidence 357889999999987655 56667 7742333444 44567777754
No 63
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=24.94 E-value=2.2e+02 Score=26.13 Aligned_cols=46 Identities=17% Similarity=0.026 Sum_probs=33.4
Q ss_pred HHhhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCCC
Q 028045 149 AVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGE 199 (214)
Q Consensus 149 ~~~~LkKGd~V~VeGrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~~ 199 (214)
.++.|..|+.|.|+|.+..+.=.. .....-..||.|+ +|+.|.+..
T Consensus 86 ~~~~l~~e~~V~V~G~v~~~~~~~--~~~~~g~~El~~~---~i~vl~~a~ 131 (487)
T 1eov_A 86 WAGSLNLESIVLVRGIVKKVDEPI--KSATVQNLEIHIT---KIYTISETP 131 (487)
T ss_dssp HHTTCCTTCEEEEEEEEEECSSCC--TTSSEEEEEEEEE---EEEEEECCC
T ss_pred HHhcCCCCCEEEEEEEEEeCCCCC--cCCCCCcEEEEEE---EEEEeeccc
Confidence 456799999999999998764211 1122346899999 999997653
No 64
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=23.53 E-value=62 Score=30.43 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=41.5
Q ss_pred CceEEEEEEeChhHHHHHHhhcCCCCeEEEEEEeEEeeeecCCCC-eEEEEEEEEEEeCCcEEEecCCCC
Q 028045 132 PVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSING-EVKNIPEICIRRDGTLRLVKSGES 200 (214)
Q Consensus 132 ~t~W~~V~~~gk~lAe~~~~~LkKGd~V~VeGrL~tr~w~dk~dG-~~r~~~eIvv~~~g~I~~L~~~~~ 200 (214)
.+.-+.|.+.++ + .+.+++||.|.|.|-+..........| ...+.+.|.+. .|+.......
T Consensus 203 ~pr~~~v~l~~d-l----v~~~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~---~i~~~~~~~~ 264 (595)
T 3f9v_A 203 LPRQLEIILEDD-L----VDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVS---SIEVSQKVLD 264 (595)
T ss_dssp CCCEEEEEEEGG-G----TTCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEE---EEEECCCCCC
T ss_pred CCceEEEEEecc-c----ccccccCCEEEEEEEEEecccccccCCCcceEEEEEEEE---eecccccccc
Confidence 456788888887 4 458999999999999988755321022 23456667777 7777655433
No 65
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=23.39 E-value=2.2e+02 Score=26.28 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=50.4
Q ss_pred EEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHH---HHHhhcCCCCeEEEE
Q 028045 86 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS---YAVKQLVKNSSVYVE 162 (214)
Q Consensus 86 kV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe---~~~~~LkKGd~V~Ve 162 (214)
.|.|.|+|-. .|.. |+ + .|-.--. . +| -++|++-.+...+ ...+.|..||.|.|+
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~-~F~~LrD-----~-sg---------~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~ 115 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-A-GFAHIQD-----V-TG---------QIQIYVRQDDVGEQQYELFKISDLGDIVGVR 115 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-E-EEEEEEE-----T-TE---------EEEEEEEHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEEEEE---EecC--CC-c-EEEEEEE-----C-CE---------eEEEEEECCcCCHHHHHHHhcCCCCCEEEEE
Confidence 6999999966 3333 33 2 3333211 1 22 3777765431221 123679999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCcEEEecCC
Q 028045 163 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 198 (214)
Q Consensus 163 GrL~tr~w~dk~dG~~r~~~eIvv~~~g~I~~L~~~ 198 (214)
|.+..+ + .| ..||.|+ +|++|.+.
T Consensus 116 G~v~~~----~-~g----e~ei~~~---~i~vl~~~ 139 (493)
T 3a74_A 116 GTMFKT----K-VG----ELSIKVS---SYEFLTKA 139 (493)
T ss_dssp EEEEEC----T-TC----CEEEEEE---EEEEEECC
T ss_pred EEEEeC----C-CC----cEEEEEE---EEEEcccc
Confidence 999765 3 56 3789999 89999754
No 66
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=20.89 E-value=4.6e+02 Score=23.53 Aligned_cols=82 Identities=17% Similarity=0.313 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCceEEEecCCcEEEEEEEEECCceeccCCCcccCCCCceEEEEEEeChhHHH-HHHhhcCCCCeEEEEEE
Q 028045 86 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS-YAVKQLVKNSSVYVEGD 164 (214)
Q Consensus 86 kV~LiGrVg~dPelr~t~nG~~v~~FsVAt~~~~~~~~~Ge~~~~~~t~W~~V~~~gk~lAe-~~~~~LkKGd~V~VeGr 164 (214)
.|.|.|+|-. .|. .|+.++-+.|- |. +| -++|++-.+ ..+ +....|..|+.|.|+|.
T Consensus 13 ~V~v~Gwv~~---~R~--~Gk~~~Fi~Lr------D~-~g---------~iQvv~~~~-~~~~~~~~~l~~~~~v~v~G~ 70 (435)
T 2xgt_A 13 RVCIKGWIHR---MRR--QGKSLMFFILR------DG-TG---------FLQVLLMDK-LCQTYDALTVNTECTVEIYGA 70 (435)
T ss_dssp EEEEEEEEEE---EEE--CTTSEEEEEEE------CS-SC---------EEEEEEEGG-GGSSHHHHHCCTTCEEEEEEE
T ss_pred EEEEEEEEEE---ecc--cCCCcEEEEEE------EC-Cc---------eEEEEECCc-chhHHHHhcCCCCCEEEEEEE
Confidence 6899999965 333 34333322222 11 22 267776543 321 11226999999999999
Q ss_pred eEEeeeecCCCCe-EEEEEEEEEEeCCcEEEecC
Q 028045 165 IEIRVYNDSINGE-VKNIPEICIRRDGTLRLVKS 197 (214)
Q Consensus 165 L~tr~w~dk~dG~-~r~~~eIvv~~~g~I~~L~~ 197 (214)
+..+. .|. ..-..||.|+ .++.|.+
T Consensus 71 v~~~~-----~~~~~~g~~El~~~---~~~vl~~ 96 (435)
T 2xgt_A 71 IKEVP-----EGKEAPNGHELIAD---FWKIIGN 96 (435)
T ss_dssp EEECC-----------TTEEEEEE---EEEEEEC
T ss_pred EEecC-----CCcCCCCcEEEEEE---EEEEeec
Confidence 98742 221 1224789999 9999975
No 67
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=20.10 E-value=76 Score=28.48 Aligned_cols=34 Identities=3% Similarity=0.059 Sum_probs=23.3
Q ss_pred EEEEEEeChhHHHHHH--hhcCCCCeEEEEEEeEEeee
Q 028045 135 WHRIAVHNEILGSYAV--KQLVKNSSVYVEGDIEIRVY 170 (214)
Q Consensus 135 W~~V~~~gk~lAe~~~--~~LkKGd~V~VeGrL~tr~w 170 (214)
-++|++||+ .|+.+. .....|..|.|.|- +...|
T Consensus 174 ~i~~tLWg~-~A~~f~~~~~~~~~~VV~i~~~-kV~~f 209 (444)
T 4gop_C 174 SVKLTLWGK-TAETFPTNAGVDEKPVLAFKGV-KVGDF 209 (444)
T ss_dssp EEEEEEEHH-HHHTSTTSTTSSSCCEEEEESC-EEECT
T ss_pred EEEEEEEhh-hhhhhhhhhccCCCCEEEEEeE-EEeec
Confidence 399999999 887543 22567887777763 33445
Done!