BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028047
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 121 NRWKDRQQRMSRQLTEAPSDDADSQIGSDEDVAGDIPDGQL--------CVVCLTRRRIS 172
N +K+ + + L + D + + EDV+G + QL C VC+ +
Sbjct: 249 NIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSV 308
Query: 173 AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
F PCGHLV C+ CA S+ KCP+CR ++ ++R + S
Sbjct: 309 VFIPCGHLVVCQECAPSLR-----KCPICRGIIKGTVRTFLS 345
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 15/77 (19%)
Query: 147 GSDEDVAGDIP---------DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPK 197
G+ EDV+ D+P + + C VC+ + F PCGHLV C+ CA S+ K
Sbjct: 4 GTTEDVS-DLPVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR-----K 57
Query: 198 CPVCRMTVRSSMRIYFS 214
CP+CR T++ ++R + S
Sbjct: 58 CPICRSTIKGTVRTFLS 74
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
S E+ + + +LC +C+ R F PCGHLV C++CA EA KCP+C +
Sbjct: 13 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 67
Query: 208 SMRIYFS 214
+I+ S
Sbjct: 68 KQKIFMS 74
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
S E+ + + +LC +C+ R F PCGHLV C++CA EA KCP+C +
Sbjct: 14 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 68
Query: 208 SMRIYFS 214
+I+ S
Sbjct: 69 KQKIFMS 75
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 148 SDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207
S E+ + + +LC +C+ R F PCGHLV C++CA EA KCP+C +
Sbjct: 13 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 67
Query: 208 SMRIYFS 214
+I S
Sbjct: 68 KQKILMS 74
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 213
+ + LC+VC S F PCGH VCC CA ++ CPVCR V +Y
Sbjct: 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHVQHVYL 67
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 147 GSDEDVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 206
GS E + + + C VCL R F PCGHLV C CA ++ CP+CR VR
Sbjct: 1 GSVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLV-CAECAPGLQ-----LCPICRAPVR 54
Query: 207 SSMRIYFS 214
S +R + S
Sbjct: 55 SRVRTFLS 62
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
QLC +C + PCGHL+C C S + CP CR ++ + I
Sbjct: 335 QLCKICAENDKDVKIEPCGHLMCT-SCLTSWQESEGQGCPFCRCEIKGTEPI 385
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
QLC +C + PCGHL+C C S + CP CR ++ + I
Sbjct: 335 QLCKICAENDKDVKIEPCGHLMCT-SCLTSWQESEGQGCPFCRCEIKGTEPI 385
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
QLC +C + PCGHL+C C S + CP CR ++ + I
Sbjct: 333 QLCKICAENDKDVKIEPCGHLMCT-SCLTSWQESEGQGCPFCRCEIKGTEPI 383
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
QLC +C + PCGHL+C C S + CP CR ++ + I
Sbjct: 333 QLCKICAENDKDVKIEPCGHLMCT-SCLTSWQESEGQGCPFCRCEIKGTEPI 383
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
QLC +C + PCGHL+C C + + CP CR ++ + I
Sbjct: 339 QLCKICAENDKDVKIEPCGHLMCT-SCLTAWQESDGQGCPFCRCEIKGTEPI 389
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
QLC +C + PCGHL+ C C S + CP CR ++ + I
Sbjct: 28 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 78
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
pdb|4ELL|B Chain B, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
Length = 411
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 54 SAVGICSFKNGIPEIK----SCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSI 109
S GIC KN + K + KDLP+ + E K +++ + S I+F++ + + L
Sbjct: 331 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 390
Query: 110 GILGYAIVR 118
IL YA R
Sbjct: 391 NILQYASTR 399
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|B Chain B, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|D Chain D, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|F Chain F, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|H Chain H, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 152
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 54 SAVGICSFKNGIPEIK----SCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSI 109
S GIC KN + K + KDLP+ + E K +++ + S I+F++ + + L
Sbjct: 72 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 131
Query: 110 GILGYAIVR 118
IL YA R
Sbjct: 132 NILQYASTR 140
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
QLC +C + PCGHL+ C C S + CP CR ++ + I
Sbjct: 25 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 75
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
pdb|2R7G|C Chain C, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
Length = 347
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 54 SAVGICSFKNGIPEIK----SCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSI 109
S GIC KN + K + KDLP+ + E K +++ + S I+F++ + + L
Sbjct: 267 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 326
Query: 110 GILGYAIVR 118
IL YA R
Sbjct: 327 NILQYASTR 335
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
pdb|3POM|B Chain B, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
Length = 352
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 54 SAVGICSFKNGIPEIK----SCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSI 109
S GIC KN + K + KDLP+ + E K +++ + S I+F++ + + L
Sbjct: 272 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 331
Query: 110 GILGYAIVR 118
IL YA R
Sbjct: 332 NILQYASTR 340
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
pdb|1N4M|B Chain B, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
Length = 345
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 54 SAVGICSFKNGIPEIK----SCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSI 109
S GIC KN + K + KDLP+ + E K +++ + S I+F++ + + L
Sbjct: 267 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 326
Query: 110 GILGYAIVR 118
IL YA R
Sbjct: 327 NILQYASTR 335
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 35.4 bits (80), Expect = 0.022, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPV 200
C +CL R + PCGH C+ C I R+A KCPV
Sbjct: 9 CPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 46
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211
QLC +C + PCGHL+ C C + + CP CR ++ + I
Sbjct: 27 QLCKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEIKGTEPI 77
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 54 SAVGICSFKNGIPEIK----SCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSI 109
S GIC KN + K + KDLP+ + E K +++ + S I+F++ + + L
Sbjct: 268 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 327
Query: 110 GILGYA 115
IL YA
Sbjct: 328 NILQYA 333
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPV 200
C +CL R + PCGH C+ C I R+A KCPV
Sbjct: 28 CPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 65
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 33.9 bits (76), Expect = 0.070, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 162 CVVCLTRRRISAF--NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 213
CV+C R + GHL+ C CA +++ P CPVCR ++ + YF
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKP-CPVCRQPIQMIVLTYF 62
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 33.9 bits (76), Expect = 0.072, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 162 CVVCLTRRRISAF--NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 213
CV+C R + GHL+ C CA +++ P CPVCR ++ + YF
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKP-CPVCRQPIQMIVLTYF 63
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 33.9 bits (76), Expect = 0.076, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 54 SAVGICSFKNGIPEIK----SCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSI 109
S GIC KN + K + KDLP+ + E K +++ + S I+F++ + + L
Sbjct: 576 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 635
Query: 110 GILGYAIVR 118
IL YA R
Sbjct: 636 NILQYASTR 644
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPV 200
C +CL R + PCGH C+ C I R+A KCPV
Sbjct: 21 CPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 58
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 162 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPV 200
C +CL R + PCGH C+ C I R+A KCPV
Sbjct: 21 CPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 58
>pdb|4ECI|A Chain A, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Acetate
pdb|4ECI|B Chain B, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Acetate
pdb|4ECJ|A Chain A, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Glutathione
pdb|4ECJ|B Chain B, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Glutathione
Length = 244
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 77 FLSEKTKDLMVVDLVNRSKILFWSGIVLGSL-----SIGILGYAIVRNWNRWKDRQQRMS 131
+L+EKT LM D+ RS+++ W +G + + DR Q +
Sbjct: 76 YLAEKTGQLMPADVKGRSRVIQWLMFQMGGVGPMQGQANVFFRYFPEKLQGAIDRYQHET 135
Query: 132 RQLTEAPSDDADSQIGSDEDVAGD 155
R+L E D ++G E +AGD
Sbjct: 136 RRLYEV----LDGRLGEAEYLAGD 155
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 162 CVVCLTRRRISAF--NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214
C +C R R GHLV C CA +++ A CP+C+ ++ ++++ +
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQLVIKVFIA 63
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit
(Irx3) Of Cellulose Synthase
Length = 93
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 158 DGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRM---TVRS 207
DGQ C +C + ++ A N CG C R C RE + CP C+ +R
Sbjct: 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPAC-RPCYEYERREGTQNCPQCKTRYKRLRG 73
Query: 208 SMRI 211
S R+
Sbjct: 74 SPRV 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,208,624
Number of Sequences: 62578
Number of extensions: 249369
Number of successful extensions: 751
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 47
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)