Query 028047
Match_columns 214
No_of_seqs 275 out of 1438
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vje_A E3 ubiquitin-protein li 99.6 6.3E-16 2.2E-20 101.3 3.5 56 158-214 7-64 (64)
2 2vje_B MDM4 protein; proto-onc 99.6 8.4E-16 2.9E-20 100.4 3.8 56 158-214 6-63 (63)
3 2ea5_A Cell growth regulator w 99.6 1E-15 3.4E-20 101.5 4.0 55 155-214 11-65 (68)
4 2yho_A E3 ubiquitin-protein li 99.5 1.8E-15 6.1E-20 103.3 -0.5 55 155-214 14-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.5 2.7E-15 9.3E-20 101.1 -0.4 55 155-214 20-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.4 4.9E-15 1.7E-19 100.0 -1.5 55 155-214 21-75 (75)
7 2ecy_A TNF receptor-associated 99.3 8.5E-13 2.9E-17 86.5 3.9 53 154-207 10-62 (66)
8 2ysl_A Tripartite motif-contai 99.3 1.5E-12 5E-17 86.9 4.9 54 153-207 14-69 (73)
9 2d8t_A Dactylidin, ring finger 99.3 1.6E-12 5.6E-17 86.4 4.6 50 156-207 12-61 (71)
10 2yur_A Retinoblastoma-binding 99.3 1.8E-12 6.2E-17 87.0 4.0 56 151-207 7-64 (74)
11 2ecn_A Ring finger protein 141 99.3 1.3E-12 4.3E-17 86.6 3.2 56 154-212 10-65 (70)
12 2djb_A Polycomb group ring fin 99.3 2E-12 6.8E-17 86.2 4.0 56 152-209 8-64 (72)
13 2csy_A Zinc finger protein 183 99.3 3.2E-12 1.1E-16 87.1 4.6 52 154-207 10-61 (81)
14 2ea6_A Ring finger protein 4; 99.3 2.4E-12 8.2E-17 84.7 3.3 53 153-207 9-68 (69)
15 2ct2_A Tripartite motif protei 99.2 6.4E-12 2.2E-16 86.7 4.7 54 153-207 9-68 (88)
16 1t1h_A Gspef-atpub14, armadill 99.2 5.1E-12 1.7E-16 85.4 4.0 52 155-207 4-55 (78)
17 2egp_A Tripartite motif-contai 99.2 2.4E-12 8.1E-17 87.1 2.2 53 154-207 7-65 (79)
18 4ayc_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 95.7 3.3 50 158-209 52-101 (138)
19 3ztg_A E3 ubiquitin-protein li 99.2 6.8E-12 2.3E-16 87.5 4.0 53 153-206 7-61 (92)
20 1e4u_A Transcriptional repress 99.2 4.8E-12 1.6E-16 85.9 2.7 56 155-211 7-66 (78)
21 2xeu_A Ring finger protein 4; 99.2 5E-12 1.7E-16 81.9 2.7 53 159-213 3-64 (64)
22 3ng2_A RNF4, snurf, ring finge 99.2 4E-12 1.4E-16 84.2 2.1 54 157-212 8-70 (71)
23 2ecw_A Tripartite motif-contai 99.2 1.2E-11 4.2E-16 84.5 4.4 54 153-207 13-71 (85)
24 2kiz_A E3 ubiquitin-protein li 99.2 1.2E-11 4.1E-16 81.6 4.2 54 155-210 10-66 (69)
25 1chc_A Equine herpes virus-1 r 99.2 6.2E-12 2.1E-16 82.7 2.6 53 159-213 5-58 (68)
26 2ysj_A Tripartite motif-contai 99.2 1.5E-11 5.3E-16 79.6 3.9 48 153-201 14-63 (63)
27 3fl2_A E3 ubiquitin-protein li 99.2 7.5E-12 2.6E-16 92.2 2.5 51 156-207 49-99 (124)
28 3l11_A E3 ubiquitin-protein li 99.2 8.8E-12 3E-16 90.6 2.4 53 154-207 10-62 (115)
29 3lrq_A E3 ubiquitin-protein li 99.2 7.6E-12 2.6E-16 88.8 2.0 52 155-207 18-70 (100)
30 1g25_A CDK-activating kinase a 99.2 1.2E-11 4.1E-16 80.7 2.7 48 159-207 3-55 (65)
31 2ect_A Ring finger protein 126 99.2 1.9E-11 6.4E-16 82.6 3.7 54 153-208 9-65 (78)
32 2ecj_A Tripartite motif-contai 99.2 2.3E-11 7.8E-16 77.3 3.9 48 153-201 9-58 (58)
33 2ecv_A Tripartite motif-contai 99.1 1.6E-11 5.4E-16 83.9 3.1 54 153-207 13-71 (85)
34 3t6p_A Baculoviral IAP repeat- 99.1 3E-12 1E-16 109.8 -0.7 54 156-214 292-345 (345)
35 2ecm_A Ring finger and CHY zin 99.1 1.8E-11 6.3E-16 76.9 2.6 47 159-207 5-55 (55)
36 2ep4_A Ring finger protein 24; 99.1 1.5E-11 5E-16 82.3 2.2 57 153-211 9-68 (74)
37 1iym_A EL5; ring-H2 finger, ub 99.1 3.4E-11 1.2E-15 75.7 3.4 48 157-206 3-54 (55)
38 2l0b_A E3 ubiquitin-protein li 99.1 3.8E-11 1.3E-15 83.7 3.9 50 156-207 37-89 (91)
39 1z6u_A NP95-like ring finger p 99.1 3.3E-11 1.1E-15 91.7 2.5 52 156-208 75-126 (150)
40 1x4j_A Ring finger protein 38; 99.1 4.3E-11 1.5E-15 80.3 2.5 49 157-207 21-72 (75)
41 3hct_A TNF receptor-associated 99.1 5.7E-11 1.9E-15 86.7 3.2 53 154-207 13-65 (118)
42 2kr4_A Ubiquitin conjugation f 99.1 1E-10 3.5E-15 80.5 4.3 53 153-207 8-60 (85)
43 1wgm_A Ubiquitin conjugation f 99.1 1.7E-10 5.8E-15 81.6 5.3 53 153-207 16-69 (98)
44 2ckl_B Ubiquitin ligase protei 99.1 5.9E-11 2E-15 91.5 3.1 53 154-207 49-102 (165)
45 2kre_A Ubiquitin conjugation f 99.0 1.6E-10 5.5E-15 82.0 4.8 54 152-207 22-75 (100)
46 2y43_A E3 ubiquitin-protein li 99.0 4.1E-11 1.4E-15 84.7 1.7 51 155-207 18-69 (99)
47 1bor_A Transcription factor PM 99.0 1.9E-11 6.4E-16 77.6 -0.3 45 158-207 5-49 (56)
48 2ckl_A Polycomb group ring fin 99.0 1.2E-10 4.1E-15 83.6 3.4 51 155-207 11-62 (108)
49 1rmd_A RAG1; V(D)J recombinati 99.0 5E-11 1.7E-15 86.7 1.4 51 156-207 20-70 (116)
50 2y1n_A E3 ubiquitin-protein li 99.0 1E-10 3.5E-15 101.2 3.4 53 159-212 332-384 (389)
51 3knv_A TNF receptor-associated 99.0 9.5E-11 3.2E-15 88.3 2.6 50 155-205 27-76 (141)
52 1jm7_A BRCA1, breast cancer ty 99.0 8.1E-11 2.8E-15 84.8 0.7 50 157-207 19-70 (112)
53 1v87_A Deltex protein 2; ring- 99.0 3.1E-10 1.1E-14 82.1 3.3 48 159-207 25-94 (114)
54 4ap4_A E3 ubiquitin ligase RNF 98.9 7.5E-10 2.6E-14 81.6 3.6 48 158-207 6-60 (133)
55 2ecl_A Ring-box protein 2; RNF 98.9 1E-09 3.6E-14 74.7 3.4 47 159-207 15-76 (81)
56 2c2l_A CHIP, carboxy terminus 98.9 1E-09 3.4E-14 90.8 4.0 52 155-207 204-255 (281)
57 1jm7_B BARD1, BRCA1-associated 98.9 2.6E-10 8.7E-15 83.1 0.0 48 155-206 18-66 (117)
58 3hcs_A TNF receptor-associated 98.9 1E-09 3.5E-14 84.9 3.2 53 154-207 13-65 (170)
59 2f42_A STIP1 homology and U-bo 98.8 2.6E-09 8.9E-14 83.3 4.1 54 153-207 100-153 (179)
60 4ap4_A E3 ubiquitin ligase RNF 98.8 2.2E-09 7.4E-14 79.1 2.9 55 157-213 70-133 (133)
61 2yu4_A E3 SUMO-protein ligase 98.7 4.7E-09 1.6E-13 73.5 3.3 47 157-204 5-59 (94)
62 3dpl_R Ring-box protein 1; ubi 98.7 9.4E-09 3.2E-13 73.6 3.4 46 159-206 37-100 (106)
63 3htk_C E3 SUMO-protein ligase 98.5 8.4E-08 2.9E-12 78.6 4.8 50 157-207 179-232 (267)
64 2d8s_A Cellular modulator of i 98.4 7E-08 2.4E-12 65.5 2.4 51 157-208 13-71 (80)
65 4a0k_B E3 ubiquitin-protein li 98.4 2.9E-08 1E-12 72.1 0.1 46 159-206 48-111 (117)
66 3vk6_A E3 ubiquitin-protein li 98.3 3.7E-07 1.3E-11 63.6 4.0 49 162-211 4-53 (101)
67 1wim_A KIAA0161 protein; ring 98.3 1.5E-07 5E-12 65.6 1.2 45 159-204 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 97.9 3.9E-06 1.3E-10 53.7 1.7 51 160-212 4-57 (61)
69 2ct0_A Non-SMC element 1 homol 97.9 1.8E-05 6.2E-10 52.6 5.0 50 158-208 14-65 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.9 6E-06 2E-10 52.7 2.2 48 158-206 5-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.5 1.6E-05 5.4E-10 67.4 -0.1 50 157-207 306-373 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.011 3.6E-07 41.0 1.6 31 159-190 3-36 (101)
73 3nw0_A Non-structural maintena 94.6 0.024 8.1E-07 45.8 3.6 49 159-208 180-230 (238)
74 2ko5_A Ring finger protein Z; 93.6 0.035 1.2E-06 37.9 2.3 50 158-211 27-77 (99)
75 2cs3_A Protein C14ORF4, MY039 92.8 0.058 2E-06 35.7 2.2 34 158-192 14-51 (93)
76 1i4o_C X-linked IAP, baculovir 92.4 0.0038 1.3E-07 46.4 -4.3 59 64-131 44-106 (141)
77 2i3h_A Baculoviral IAP repeat- 91.0 0.0018 6.2E-08 47.6 -7.3 60 63-131 47-110 (133)
78 2poi_A Baculoviral IAP repeat- 89.0 0.0028 9.5E-08 43.9 -7.4 59 64-131 21-83 (94)
79 2qra_D XIAP, baculoviral IAP r 88.6 0.0037 1.3E-07 44.5 -7.1 59 64-131 38-100 (111)
80 1jd5_A DIAP1, apoptosis 1 inhi 87.8 0.0033 1.1E-07 45.6 -7.9 58 65-131 27-88 (124)
81 2vm5_A Baculoviral IAP repeat- 87.4 0.0031 1.1E-07 44.6 -8.1 60 64-131 21-84 (106)
82 3mup_A Baculoviral IAP repeat- 84.7 0.0054 1.9E-07 44.4 -8.1 58 65-131 21-82 (122)
83 1g73_C Inhibitors of apoptosis 84.3 0.0097 3.3E-07 43.0 -6.9 56 65-131 29-88 (121)
84 1se0_A Apoptosis 1 inhibitor; 83.9 0.014 4.7E-07 41.9 -6.2 57 65-131 16-76 (116)
85 3d9t_A Baculoviral IAP repeat- 83.8 0.0055 1.9E-07 42.6 -8.2 58 65-131 15-76 (97)
86 3m1d_A Baculoviral IAP repeat- 82.1 0.0092 3.2E-07 40.4 -7.4 58 65-131 13-74 (85)
87 3t6p_A Baculoviral IAP repeat- 81.4 0.013 4.5E-07 49.9 -8.4 58 65-131 7-68 (345)
88 3hl5_A Baculoviral IAP repeat- 80.4 0.016 5.3E-07 40.1 -6.9 56 65-131 15-74 (95)
89 1weo_A Cellulose synthase, cat 78.8 1.2 4.1E-05 30.0 2.3 49 158-207 15-70 (93)
90 2qfa_A Baculoviral IAP repeat- 76.9 0.029 1E-06 41.6 -6.7 61 65-131 16-82 (142)
91 3siq_A Apoptosis 1 inhibitor; 76.9 0.03 1E-06 41.2 -6.6 57 65-131 38-98 (136)
92 3m62_A Ubiquitin conjugation f 65.9 4.2 0.00014 39.0 3.5 53 153-207 885-938 (968)
93 2jne_A Hypothetical protein YF 58.6 1.3 4.4E-05 30.3 -1.0 43 159-208 32-74 (101)
94 2zet_C Melanophilin; complex, 54.6 2.2 7.4E-05 31.8 -0.4 46 158-204 67-117 (153)
95 2lri_C Autoimmune regulator; Z 50.5 13 0.00045 23.3 2.9 45 159-204 12-59 (66)
96 3i2d_A E3 SUMO-protein ligase 44.3 16 0.00056 31.0 3.3 48 158-206 248-299 (371)
97 1zbd_B Rabphilin-3A; G protein 43.8 2.7 9.2E-05 30.6 -1.4 46 158-204 54-107 (134)
98 4fo9_A E3 SUMO-protein ligase 40.9 20 0.00068 30.4 3.3 48 158-206 214-265 (360)
99 2a20_A Regulating synaptic mem 40.8 3.1 0.0001 25.8 -1.2 22 156-181 6-28 (62)
100 2d8v_A Zinc finger FYVE domain 39.6 18 0.00061 22.8 2.1 33 157-191 6-39 (67)
101 2knc_B Integrin beta-3; transm 39.3 40 0.0014 21.9 4.0 20 101-120 16-35 (79)
102 2l9u_A Receptor tyrosine-prote 38.9 30 0.001 18.8 2.7 24 101-124 11-34 (40)
103 3ql9_A Transcriptional regulat 37.5 23 0.00079 25.4 2.8 45 159-204 57-111 (129)
104 2gmg_A Hypothetical protein PF 36.4 11 0.00038 26.1 0.9 22 176-204 72-93 (105)
105 1wil_A KIAA1045 protein; ring 35.6 31 0.0011 22.9 2.9 35 154-190 10-47 (89)
106 2xqn_T Testin, TESS; metal-bin 34.1 27 0.00093 24.1 2.8 44 160-207 31-75 (126)
107 2k16_A Transcription initiatio 33.1 5.8 0.0002 25.3 -1.0 52 156-208 15-72 (75)
108 1z60_A TFIIH basal transcripti 32.6 29 0.001 21.3 2.3 40 160-201 16-58 (59)
109 2fiy_A Protein FDHE homolog; F 32.0 9.9 0.00034 31.5 0.1 47 157-204 180-231 (309)
110 2rgt_A Fusion of LIM/homeobox 31.2 33 0.0011 25.2 2.9 44 160-207 34-77 (169)
111 3c5k_A HD6, histone deacetylas 30.4 32 0.0011 23.8 2.5 24 159-183 24-47 (109)
112 3mjh_B Early endosome antigen 30.0 13 0.00046 20.2 0.3 11 197-207 7-17 (34)
113 1wd2_A Ariadne-1 protein homol 29.9 17 0.00059 22.2 0.9 13 195-207 6-18 (60)
114 2jtn_A LIM domain-binding prot 27.7 28 0.00095 26.0 1.9 43 161-207 89-131 (182)
115 2lbm_A Transcriptional regulat 27.6 53 0.0018 23.9 3.4 45 159-204 63-117 (142)
116 1l8d_A DNA double-strand break 26.3 16 0.00055 25.0 0.3 8 198-205 50-57 (112)
117 1m3v_A FLIN4, fusion of the LI 26.0 31 0.0011 23.9 1.8 46 160-207 33-81 (122)
118 2jrp_A Putative cytoplasmic pr 25.0 9.2 0.00031 25.2 -1.1 10 198-207 54-63 (81)
119 2jvx_A NF-kappa-B essential mo 23.4 23 0.0008 18.3 0.5 10 196-205 4-13 (28)
120 2g45_A Ubiquitin carboxyl-term 22.9 51 0.0017 23.5 2.5 26 159-184 34-59 (129)
121 2l5u_A Chromodomain-helicase-D 22.3 64 0.0022 19.5 2.6 46 157-204 9-58 (61)
122 1rut_X Flinc4, fusion protein 21.7 43 0.0015 25.1 2.0 46 160-207 33-81 (188)
123 2hgo_A CASSIICOLIN; toxin, dis 21.7 36 0.0012 16.8 1.0 26 161-186 2-27 (27)
124 3t7l_A Zinc finger FYVE domain 21.6 42 0.0014 22.2 1.7 31 159-190 20-54 (90)
125 3u5n_A E3 ubiquitin-protein li 21.6 25 0.00086 27.0 0.6 46 158-204 6-54 (207)
126 3vhs_A ATPase wrnip1; zinc fin 21.0 24 0.00082 17.8 0.2 9 197-205 8-16 (29)
127 2uzg_A Ubiquitin carboxyl-term 20.4 40 0.0014 22.7 1.4 26 159-184 25-53 (97)
128 3dvk_B Voltage-dependent R-typ 20.4 70 0.0024 15.7 1.9 18 108-125 4-21 (23)
No 1
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.58 E-value=6.3e-16 Score=101.30 Aligned_cols=56 Identities=30% Similarity=0.723 Sum_probs=50.0
Q ss_pred cccccccccccccceEEc--cCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047 158 DGQLCVVCLTRRRISAFN--PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~l--pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s 214 (214)
++..|+||++++++++++ ||||.++|..|+..++.. +..||+||++|..++++|.|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhceEeeecC
Confidence 456899999999999988 999997799999999853 45799999999999999986
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.58 E-value=8.4e-16 Score=100.39 Aligned_cols=56 Identities=25% Similarity=0.665 Sum_probs=49.6
Q ss_pred cccccccccccccceEEc--cCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047 158 DGQLCVVCLTRRRISAFN--PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~l--pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s 214 (214)
....|+||++++++++++ ||||.+.|..|+.+++.. +..||+||++|..++++|.|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhceEEEecC
Confidence 356899999999999887 999996699999999854 35899999999999999986
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=101.55 Aligned_cols=55 Identities=27% Similarity=0.585 Sum_probs=48.3
Q ss_pred CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s 214 (214)
...+...|+||++++++++++||||.+.|..|+..+. .||+||++|...+++|.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ-----QCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS-----SCTTTCCCCCCEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC-----CCCCCCcchhceEEeecC
Confidence 3345678999999999999999999966999999754 899999999999999963
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.49 E-value=1.8e-15 Score=103.27 Aligned_cols=55 Identities=40% Similarity=1.001 Sum_probs=49.0
Q ss_pred CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s 214 (214)
.+.++..|+||++..++++++||||.++|..|+..++ .||+||++|...+++|.+
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEEEECBCT
T ss_pred cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCeEEEEeC
Confidence 3445678999999999999999999955999999886 899999999999999974
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.48 E-value=2.7e-15 Score=101.06 Aligned_cols=55 Identities=38% Similarity=0.952 Sum_probs=48.3
Q ss_pred CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s 214 (214)
.+.++..|+||++...+++++||||.+.|..|+..|. .||+||++|...+++|.|
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD-----KCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS-----BCTTTCCBCSEEEECBC-
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc-----cCCCcCcCccCcEEEeeC
Confidence 3455679999999999999999999944999999883 899999999999999986
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.9e-15 Score=100.00 Aligned_cols=55 Identities=38% Similarity=0.983 Sum_probs=48.1
Q ss_pred CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s 214 (214)
++.+...|+||++.+.+++++||||.+.|..|+.... .||+||++|...+++|.|
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD-----KCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS-----BCTTTCCBCCCCCBCCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCC-----CCccCCceecCcEEEecC
Confidence 3445678999999999999999999933999998753 899999999999999986
No 7
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8.5e-13 Score=86.52 Aligned_cols=53 Identities=25% Similarity=0.567 Sum_probs=45.8
Q ss_pred CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+.+.+...|+||++...+++.++|||.| |..|+..|.......||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456678999999999999999999999 8999999985445689999999864
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=86.91 Aligned_cols=54 Identities=26% Similarity=0.674 Sum_probs=45.8
Q ss_pred cCCCccccccccccccccceEEccCCCccccHhhHHHhhc--CCCcccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER--EASPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~--~~~~~CP~CR~~i~~ 207 (214)
.+.+.+...|+||++...+++.++|||.| |..|+..|.. .....||+||+++..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34556678999999999999999999999 8999999985 234579999999864
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=86.43 Aligned_cols=50 Identities=22% Similarity=0.539 Sum_probs=43.3
Q ss_pred CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..+...|+||++...+++.+||||.| |..|+..|... ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHC-CCcCcCcCchhCH
Confidence 34567899999999999999999999 89999998754 4689999999864
No 10
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=86.99 Aligned_cols=56 Identities=29% Similarity=0.616 Sum_probs=46.8
Q ss_pred cccCCCccccccccccccccceEEcc-CCCccccHhhHHHhhcCC-Ccccccccccccc
Q 028047 151 DVAGDIPDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREA-SPKCPVCRMTVRS 207 (214)
Q Consensus 151 ~~~~~~~~~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~~-~~~CP~CR~~i~~ 207 (214)
+..+.+.+...|+||++...+++.+| |||.| |..|+..|.... ...||+||+++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34556677889999999999999999 99999 899999998632 2579999997543
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=86.61 Aligned_cols=56 Identities=23% Similarity=0.666 Sum_probs=47.3
Q ss_pred CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEee
Q 028047 154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~ 212 (214)
+...+...|+||++...+ +.+||||.| |..|+..|.. ....||+||.++.....+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSD-RHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSC-CCSSCHHHHHCTTCCCCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHH-CcCcCCCcCCcccCCCccc
Confidence 345567799999999999 889999999 8999999875 3568999999998776655
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=86.24 Aligned_cols=56 Identities=21% Similarity=0.462 Sum_probs=47.4
Q ss_pred ccCCCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccceE
Q 028047 152 VAGDIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 209 (214)
Q Consensus 152 ~~~~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~ 209 (214)
+.+++++...|+||++...+++.+ +|||.| |..|+..|... ...||+||..+....
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYY-SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHH-CSSCTTTCCCCCSSC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHc-CCcCCCcCcccCccc
Confidence 445667788999999999999987 999999 89999999853 458999999987643
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.2e-12 Score=87.14 Aligned_cols=52 Identities=21% Similarity=0.545 Sum_probs=44.5
Q ss_pred CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
++..+...|+||++...+++.+||||.| |..|+..|... ...||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRA-TPRCYICDQPTGG 61 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHH-CSBCSSSCCBCCS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHC-CCcCCCcCccccc
Confidence 3445567999999999999999999999 89999999853 4579999999864
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=84.72 Aligned_cols=53 Identities=21% Similarity=0.569 Sum_probs=44.0
Q ss_pred cCCCccccccccccccccce-------EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
.....+...|+||++...++ +.++|||.| |..|+..|... ...||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34455677999999998876 899999999 89999999754 4589999999864
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.4e-12 Score=86.67 Aligned_cols=54 Identities=22% Similarity=0.604 Sum_probs=45.0
Q ss_pred cCCCccccccccccccccc----eEEccCCCccccHhhHHHhhcCC--Ccccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREA--SPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~----~~~lpCgH~~~C~~C~~~~~~~~--~~~CP~CR~~i~~ 207 (214)
.+.+.+...|+||++...+ ++.++|||.| |..|+..|.... ...||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3455667799999999998 9999999999 899999997642 3579999998753
No 16
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.23 E-value=5.1e-12 Score=85.41 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
++++...|+||++...+++.++|||.| |..|+..|.......||+||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 456678999999999999999999999 8999999986546789999999864
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=2.4e-12 Score=87.14 Aligned_cols=53 Identities=30% Similarity=0.723 Sum_probs=45.2
Q ss_pred CCCccccccccccccccceEEccCCCccccHhhHHHhhcCC------Ccccccccccccc
Q 028047 154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA------SPKCPVCRMTVRS 207 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~------~~~CP~CR~~i~~ 207 (214)
+.+.+...|+||++.+.+++.+||||.| |..|+..|.... ...||+||..+..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4556678999999999999999999999 899999987642 4579999999864
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=3.6e-12 Score=95.73 Aligned_cols=50 Identities=22% Similarity=0.571 Sum_probs=43.6
Q ss_pred cccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceE
Q 028047 158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 209 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~ 209 (214)
++..|+||++.+.+++.+||||.| |..|+..|+.. ...||+||.+|....
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKR-KIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTT-CSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccCCceECCCCCCc-cHHHHHHHHHc-CCcCCCCCCcCCCCC
Confidence 456799999999999999999999 99999999854 568999999997653
No 19
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.21 E-value=6.8e-12 Score=87.47 Aligned_cols=53 Identities=28% Similarity=0.640 Sum_probs=45.0
Q ss_pred cCCCccccccccccccccceEEcc-CCCccccHhhHHHhhcC-CCccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVERE-ASPKCPVCRMTVR 206 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~-~~~~CP~CR~~i~ 206 (214)
.+.+.+...|+||++.+.+++.+| |||.| |..|+..|+.. ....||+||.++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345667789999999999999999 99999 99999999753 2358999999973
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.20 E-value=4.8e-12 Score=85.87 Aligned_cols=56 Identities=25% Similarity=0.571 Sum_probs=44.7
Q ss_pred CCccccccccccccc--cceEEcc--CCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047 155 DIPDGQLCVVCLTRR--RISAFNP--CGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~--~~~~~lp--CgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i 211 (214)
.++++..|+||++.. .++.++| |||.| |..|+..++......||.||+++.....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 455677999999977 4566766 99999 99999999865567899999998765433
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=5e-12 Score=81.93 Aligned_cols=53 Identities=25% Similarity=0.648 Sum_probs=44.5
Q ss_pred ccccccccccccce-------EEccCCCccccHhhHHHhhcCCCccccccccccc--ceEEeee
Q 028047 159 GQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR--SSMRIYF 213 (214)
Q Consensus 159 ~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~--~~~~i~~ 213 (214)
+..|+||++...++ +.++|||.| |..|+.+|... +..||+||+++. .+.++|.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 45799999988775 889999999 89999999854 458999999987 4677763
No 22
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.20 E-value=4e-12 Score=84.24 Aligned_cols=54 Identities=24% Similarity=0.648 Sum_probs=44.5
Q ss_pred ccccccccccccccce-------EEccCCCccccHhhHHHhhcCCCcccccccccccc--eEEee
Q 028047 157 PDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIY 212 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~--~~~i~ 212 (214)
.++..|+||++...++ +.++|||.| |..|+..|... +..||+||.++.. +.++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 3456899999998876 899999999 89999999854 3589999999874 45555
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=1.2e-11 Score=84.45 Aligned_cols=54 Identities=26% Similarity=0.543 Sum_probs=45.7
Q ss_pred cCCCccccccccccccccceEEccCCCccccHhhHHHhhcCC-----Ccccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA-----SPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~-----~~~CP~CR~~i~~ 207 (214)
.+++.+...|+||++...+++.+||||.| |..|+..|.... ...||+||..+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34556678999999999999999999999 899999987542 5679999999864
No 24
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=81.60 Aligned_cols=54 Identities=24% Similarity=0.544 Sum_probs=42.9
Q ss_pred CCccccccccccccc---cceEEccCCCccccHhhHHHhhcCCCcccccccccccceEE
Q 028047 155 DIPDGQLCVVCLTRR---RISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMR 210 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~---~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~ 210 (214)
+..+...|+||++.. ..++.+||||.| |..|+..|... ...||+||..+....+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLIT-NKKCPICRVDIEAQLP 66 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHH-CSBCTTTCSBSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHc-CCCCcCcCccccCcCC
Confidence 334566899998866 457889999999 89999999754 3479999999876543
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.19 E-value=6.2e-12 Score=82.70 Aligned_cols=53 Identities=28% Similarity=0.640 Sum_probs=44.7
Q ss_pred ccccccccccccce-EEccCCCccccHhhHHHhhcCCCcccccccccccceEEeee
Q 028047 159 GQLCVVCLTRRRIS-AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 213 (214)
Q Consensus 159 ~~~C~IC~~~~~~~-~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~ 213 (214)
+..|+||++...++ +.+||||.| |..|+..|... +..||+||+++...++.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQ-NPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHH-SCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhC-cCcCcCCChhhHhhhhccc
Confidence 45799999999984 889999999 89999998753 3589999999988766543
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=79.62 Aligned_cols=48 Identities=25% Similarity=0.697 Sum_probs=41.0
Q ss_pred cCCCccccccccccccccceEEccCCCccccHhhHHHhhcC--CCcccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE--ASPKCPVC 201 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~--~~~~CP~C 201 (214)
.+.+++...|+||++...+++.+||||.| |..|+..|... ....||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 34566778999999999999999999999 89999999853 34579998
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.17 E-value=7.5e-12 Score=92.18 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=44.8
Q ss_pred CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+.+...|+||++...+++.+||||.| |..|+..|+......||+||.++..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34567899999999999999999999 8999999986545589999999875
No 28
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=8.8e-12 Score=90.56 Aligned_cols=53 Identities=30% Similarity=0.534 Sum_probs=45.9
Q ss_pred CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
....++..|+||++...+++.+||||.| |..|+..|.......||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3445677999999999999999999999 8999999986556689999999864
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.16 E-value=7.6e-12 Score=88.82 Aligned_cols=52 Identities=25% Similarity=0.617 Sum_probs=45.0
Q ss_pred CCccccccccccccccceEE-ccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 155 DIPDGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~-lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
.+.+...|+||++.+.+++. ++|||.| |..|+..|+......||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34567799999999999999 9999999 9999999986544689999999854
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.2e-11 Score=80.73 Aligned_cols=48 Identities=31% Similarity=0.663 Sum_probs=40.1
Q ss_pred ccccccccc-cccce----EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 159 GQLCVVCLT-RRRIS----AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 159 ~~~C~IC~~-~~~~~----~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+..|+||++ ...++ +.++|||.| |..|+.+|+......||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 457999999 66665 578999999 8999999975555689999999864
No 31
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.15 E-value=1.9e-11 Score=82.58 Aligned_cols=54 Identities=26% Similarity=0.605 Sum_probs=42.6
Q ss_pred cCCCccccccccccccccc---eEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047 153 AGDIPDGQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 208 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~ 208 (214)
.+...+...|+||++...+ ...+||||.| |..|+..|... ...||+||+.+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQ-HDSCPVCRKSLTGQ 65 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTT-TCSCTTTCCCCCCS
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHc-CCcCcCcCCccCCc
Confidence 3344567799999887653 4678999999 89999999854 46899999998753
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=77.30 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=40.5
Q ss_pred cCCCccccccccccccccceEEccCCCccccHhhHHHhhcC--CCcccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE--ASPKCPVC 201 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~--~~~~CP~C 201 (214)
.+.+.+...|+||++...+++.++|||.| |..|+..|... ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 34556677999999999999999999999 89999999643 45679998
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=83.92 Aligned_cols=54 Identities=24% Similarity=0.653 Sum_probs=45.4
Q ss_pred cCCCccccccccccccccceEEccCCCccccHhhHHHhhcC-----CCcccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE-----ASPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~-----~~~~CP~CR~~i~~ 207 (214)
.+.+.+...|+||++...+++.+||||.| |..|+..|... ....||+||..+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34556678999999999999999999999 89999998643 24579999999874
No 34
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.14 E-value=3e-12 Score=109.81 Aligned_cols=54 Identities=39% Similarity=1.006 Sum_probs=47.1
Q ss_pred CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEeeeC
Q 028047 156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 214 (214)
Q Consensus 156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~~s 214 (214)
+.++..|+||++.+.+++++||||.++|..|+..+. .||+||.+|...+++|.|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~-----~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR-----KCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS-----BCTTTCCBCCEEEECC--
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC-----cCCCCCCCccCeEEeecC
Confidence 345679999999999999999999944999999884 899999999999999986
No 35
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.13 E-value=1.8e-11 Score=76.93 Aligned_cols=47 Identities=30% Similarity=0.708 Sum_probs=39.9
Q ss_pred ccccccccccccc----eEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 159 GQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 159 ~~~C~IC~~~~~~----~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+..|+||++...+ ++.+||||.| |..|+..|.... ..||+||+++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~-~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEG-YRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHT-CCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcC-CcCCCCCCcCCC
Confidence 4579999998765 8899999999 899999998543 689999998753
No 36
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=82.27 Aligned_cols=57 Identities=28% Similarity=0.600 Sum_probs=44.7
Q ss_pred cCCCccccccccccccccc---eEEccCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047 153 AGDIPDGQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i 211 (214)
..+..+...|+||++...+ ...+||||.| |..|+..|... ...||+||+++....++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEV-RKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHH-CSBCTTTCCBCSSCCSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHc-CCcCCCcCccccccccc
Confidence 3455567799999998754 4556999999 89999999854 34899999999876543
No 37
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.12 E-value=3.4e-11 Score=75.75 Aligned_cols=48 Identities=38% Similarity=0.742 Sum_probs=40.0
Q ss_pred ccccccccccccccc---eEEcc-CCCccccHhhHHHhhcCCCccccccccccc
Q 028047 157 PDGQLCVVCLTRRRI---SAFNP-CGHLVCCRRCAISVEREASPKCPVCRMTVR 206 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~---~~~lp-CgH~~~C~~C~~~~~~~~~~~CP~CR~~i~ 206 (214)
+++..|+||++...+ ++.+| |||.| |..|+..|... +..||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHc-CCcCcCCCCEeE
Confidence 345689999999877 77887 99999 89999999854 568999998864
No 38
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.11 E-value=3.8e-11 Score=83.72 Aligned_cols=50 Identities=24% Similarity=0.533 Sum_probs=41.9
Q ss_pred Cccccccccccccccc---eEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 156 IPDGQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 156 ~~~~~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..++..|+||++...+ ++.+||||.| |..|+..|... +..||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHc-CCcCcCcCccCCC
Confidence 3456689999998776 8889999999 89999999854 4589999998864
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.08 E-value=3.3e-11 Score=91.73 Aligned_cols=52 Identities=23% Similarity=0.530 Sum_probs=44.9
Q ss_pred CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047 156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 208 (214)
Q Consensus 156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~ 208 (214)
+.+...|+||++.+.+++.+||||.| |..|+..|.......||+||.++...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34567899999999999999999999 99999999875445899999998753
No 40
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=4.3e-11 Score=80.25 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=40.5
Q ss_pred ccccccccccccccce---EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 157 PDGQLCVVCLTRRRIS---AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~---~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
.+...|+||++...+. ..+||||.| |..|+..|... +..||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4566899999887654 788999999 89999999754 4589999998864
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.06 E-value=5.7e-11 Score=86.73 Aligned_cols=53 Identities=32% Similarity=0.656 Sum_probs=46.0
Q ss_pred CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+.+++...|+||++...+++.++|||.| |..|+..|.......||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4566778999999999999999999999 9999999986444489999999875
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.06 E-value=1e-10 Score=80.53 Aligned_cols=53 Identities=21% Similarity=0.130 Sum_probs=46.5
Q ss_pred cCCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
...+++...|+||++.+++++.++|||.| |..|+..|+.. ...||+||.++..
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hhcCchheECcccCchhcCCeECCCCCEE-CHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 44567788999999999999999999999 99999999864 4689999998764
No 43
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.06 E-value=1.7e-10 Score=81.57 Aligned_cols=53 Identities=17% Similarity=-0.018 Sum_probs=46.7
Q ss_pred cCCCccccccccccccccceEEccCC-CccccHhhHHHhhcCCCcccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCG-HLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCg-H~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
...+++...|+||++.+++++.++|| |.| |+.|+..|+.. ...||+||.++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 44567788999999999999999999 999 89999999965 5689999998764
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.05 E-value=5.9e-11 Score=91.55 Aligned_cols=53 Identities=26% Similarity=0.648 Sum_probs=45.0
Q ss_pred CCCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 154 GDIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..+.+...|+||++...+++.+ ||||.| |..|+..|.......||+||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3455677999999999999987 999999 9999999987556689999999853
No 45
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.05 E-value=1.6e-10 Score=81.99 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=47.2
Q ss_pred ccCCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 152 VAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 152 ~~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
....+++...|+||++.+++++.+||||.| |..|+..|+.. ...||+||.++..
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~-~~~cP~~~~~l~~ 75 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLN-SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHc-CCCCCCCCCCCCh
Confidence 344567788999999999999999999999 99999999964 5689999998764
No 46
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.04 E-value=4.1e-11 Score=84.68 Aligned_cols=51 Identities=27% Similarity=0.559 Sum_probs=43.8
Q ss_pred CCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 155 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
.+.+...|+||++...+++.+ +|||.| |..|+..|... ...||+||..+..
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 344567999999999999988 899999 89999999853 4689999998874
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.9e-11 Score=77.58 Aligned_cols=45 Identities=22% Similarity=0.586 Sum_probs=38.9
Q ss_pred cccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+...|+||++.+.+++.+||||.| |..|+..+ ...||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcc-cHHHHccC----CCCCCcCCcEeec
Confidence 456899999999999999999999 89998773 3479999998763
No 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.02 E-value=1.2e-10 Score=83.61 Aligned_cols=51 Identities=24% Similarity=0.557 Sum_probs=44.3
Q ss_pred CCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 155 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
.+.+...|+||++...+++.+ +|||.| |..|+..|... ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHh-CCcCcCCCccccc
Confidence 345677999999999999997 999999 89999999854 4689999999875
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=5e-11 Score=86.65 Aligned_cols=51 Identities=24% Similarity=0.531 Sum_probs=44.6
Q ss_pred CccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 156 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 156 ~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+.+...|+||++...+++.++|||.| |..|+..|.......||+||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 44567999999999999999999999 8999999986545689999999864
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.02 E-value=1e-10 Score=101.19 Aligned_cols=53 Identities=32% Similarity=0.787 Sum_probs=46.3
Q ss_pred ccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccceEEee
Q 028047 159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 212 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i~ 212 (214)
...|+||++...+++.+||||.| |..|+..|.......||+||+++.....+.
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 36899999999999999999999 999999997534568999999999876654
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.01 E-value=9.5e-11 Score=88.30 Aligned_cols=50 Identities=24% Similarity=0.509 Sum_probs=44.3
Q ss_pred CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccc
Q 028047 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV 205 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i 205 (214)
.+++...|+||++...+++.++|||.| |..|+..|+......||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 456778999999999999999999999 99999999865556899999975
No 52
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=8.1e-11 Score=84.77 Aligned_cols=50 Identities=20% Similarity=0.644 Sum_probs=42.3
Q ss_pred ccccccccccccccceEEccCCCccccHhhHHHhhcCC--Ccccccccccccc
Q 028047 157 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA--SPKCPVCRMTVRS 207 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~--~~~CP~CR~~i~~ 207 (214)
.+...|+||++...+++.+||||.| |..|+..|.... ...||+||.++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3456899999999999999999999 899999998632 2479999998864
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.95 E-value=3.1e-10 Score=82.06 Aligned_cols=48 Identities=19% Similarity=0.625 Sum_probs=38.5
Q ss_pred ccccccccccccce------------------EEccCCCccccHhhHHHhhc----CCCcccccccccccc
Q 028047 159 GQLCVVCLTRRRIS------------------AFNPCGHLVCCRRCAISVER----EASPKCPVCRMTVRS 207 (214)
Q Consensus 159 ~~~C~IC~~~~~~~------------------~~lpCgH~~~C~~C~~~~~~----~~~~~CP~CR~~i~~ 207 (214)
+..|+||++...++ ..++|||.| |..|+..|.. .....||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34899999987543 388999999 8999999984 234589999998764
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=7.5e-10 Score=81.64 Aligned_cols=48 Identities=23% Similarity=0.672 Sum_probs=41.8
Q ss_pred cccccccccccccce-------EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 158 DGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+...|+||++...++ +.++|||.| |..|+.+|... +..||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 456899999999887 999999999 89999999854 4589999999874
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1e-09 Score=74.71 Aligned_cols=47 Identities=17% Similarity=0.428 Sum_probs=36.3
Q ss_pred ccccccccccccc--------------eEEc-cCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 159 GQLCVVCLTRRRI--------------SAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 159 ~~~C~IC~~~~~~--------------~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+..|+||++...+ ++.+ +|||.| +..|+.+|... +..||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHh-CCCCCCcCCCcch
Confidence 4568888887754 4444 599999 69999999854 4589999998753
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=1e-09 Score=90.84 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=45.1
Q ss_pred CCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 155 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..++...|+||++.+.+|+.+||||.| |..|+..|+......||+||.++..
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence 445677999999999999999999999 9999999986544459999999864
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=2.6e-10 Score=83.09 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=42.3
Q ss_pred CCccccccccccccccceEEc-cCCCccccHhhHHHhhcCCCccccccccccc
Q 028047 155 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVR 206 (214)
Q Consensus 155 ~~~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~ 206 (214)
.+.+...|+||++.+.+++.+ +|||.| |..|+..|+. ..||+||.++.
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT---TBCSSSCCBCS
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc---CCCcCCCCcCc
Confidence 345567899999999999999 999999 8999999984 58999999985
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.85 E-value=1e-09 Score=84.89 Aligned_cols=53 Identities=32% Similarity=0.656 Sum_probs=46.2
Q ss_pred CCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 154 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
+.+++...|+||++...+++.++|||.| |..|+..|.......||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 4566788999999999999999999999 9999999986434589999999875
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.81 E-value=2.6e-09 Score=83.27 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=46.6
Q ss_pred cCCCccccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
...+++...|+||++.+.+|+.+||||.| |..|+..|+......||+||.++..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34567788999999999999999999999 9999999986533469999998764
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.78 E-value=2.2e-09 Score=79.14 Aligned_cols=55 Identities=24% Similarity=0.642 Sum_probs=45.4
Q ss_pred ccccccccccccccce-------EEccCCCccccHhhHHHhhcCCCccccccccccc--ceEEeee
Q 028047 157 PDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR--SSMRIYF 213 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~-------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~--~~~~i~~ 213 (214)
++...|+||++...++ +.++|||.| |..|+.+|... ...||+||.++. .+.++|.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHH-CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHc-CCCCCCCCCcCChhcceeeeC
Confidence 3456899999988775 889999999 89999999854 458999999987 4567763
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=4.7e-09 Score=73.48 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=40.2
Q ss_pred ccccccccccccccceEEcc-CCCccccHhhHHHhhcCC-----Cccccc--cccc
Q 028047 157 PDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREA-----SPKCPV--CRMT 204 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~~-----~~~CP~--CR~~ 204 (214)
.+...|+||++.+.+++.+| |||.| |..|+..|+... ...||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45678999999999999996 99999 999999998642 347999 9855
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.68 E-value=9.4e-09 Score=73.55 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=37.3
Q ss_pred ccccccccccccc------------------eEEccCCCccccHhhHHHhhcCCCccccccccccc
Q 028047 159 GQLCVVCLTRRRI------------------SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 206 (214)
Q Consensus 159 ~~~C~IC~~~~~~------------------~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~ 206 (214)
+..|.||++...+ .+.++|||.| +..|+..|... +..||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHc-CCcCcCCCCcce
Confidence 4579999987653 3668999999 69999999854 568999999864
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.50 E-value=8.4e-08 Score=78.55 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=42.3
Q ss_pred ccccccccccccccceEEc-cCCCccccHhhHHHhhcCC-Cccccc--ccccccc
Q 028047 157 PDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREA-SPKCPV--CRMTVRS 207 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~-~~~CP~--CR~~i~~ 207 (214)
.....|+||++.+++|+.. .|||.| |..|+..++... ...||+ ||..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4567999999999999985 999999 999999998642 357999 9987753
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=7e-08 Score=65.47 Aligned_cols=51 Identities=18% Similarity=0.530 Sum_probs=39.5
Q ss_pred ccccccccccccc--cceEEccCC-----CccccHhhHHHhhcCC-Ccccccccccccce
Q 028047 157 PDGQLCVVCLTRR--RISAFNPCG-----HLVCCRRCAISVEREA-SPKCPVCRMTVRSS 208 (214)
Q Consensus 157 ~~~~~C~IC~~~~--~~~~~lpCg-----H~~~C~~C~~~~~~~~-~~~CP~CR~~i~~~ 208 (214)
.+...|.||++.. .+.+.+||+ |.|| ..|+.+|.... ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH-~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVH-QACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEE-TTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeC-HHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3456899999765 456789996 9995 99999997642 24799999988643
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.42 E-value=2.9e-08 Score=72.12 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=0.4
Q ss_pred ccccccccccccce------------------EEccCCCccccHhhHHHhhcCCCccccccccccc
Q 028047 159 GQLCVVCLTRRRIS------------------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 206 (214)
Q Consensus 159 ~~~C~IC~~~~~~~------------------~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~ 206 (214)
...|.||++...+. +.++|+|.| +..|+..|... +..||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHc-CCcCCCCCCeee
Confidence 45899999887642 236999999 69999999854 558999999853
No 66
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.34 E-value=3.7e-07 Score=63.61 Aligned_cols=49 Identities=29% Similarity=0.646 Sum_probs=39.9
Q ss_pred cccccccccc-eEEccCCCccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047 162 CVVCLTRRRI-SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211 (214)
Q Consensus 162 C~IC~~~~~~-~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i 211 (214)
|.+|--.... ...+||+|+| |.+|+..+..+..+.||.|+.+|..+-.+
T Consensus 4 C~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred cCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 6677666554 4578999999 99999999876677899999999987664
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.29 E-value=1.5e-07 Score=65.61 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=35.2
Q ss_pred ccccccccccccceEE---ccCCCccccHhhHHHhhcC-------CCccccc--cccc
Q 028047 159 GQLCVVCLTRRRISAF---NPCGHLVCCRRCAISVERE-------ASPKCPV--CRMT 204 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~---lpCgH~~~C~~C~~~~~~~-------~~~~CP~--CR~~ 204 (214)
...|.||++....... .+|||.| |..|+..++.. ....||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4579999998766433 3799999 99999988752 1347999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.89 E-value=3.9e-06 Score=53.73 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=42.7
Q ss_pred cccccccccccceEEc-cCCCccccHhhHHHhhcCCCcccccccccccc--eEEee
Q 028047 160 QLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIY 212 (214)
Q Consensus 160 ~~C~IC~~~~~~~~~l-pCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~--~~~i~ 212 (214)
..|+||++...+++.. +|||.| ++.|+.+|... +..||+++.++.. ++++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 5799999999999999 999999 89999999864 3469999998854 44443
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=1.8e-05 Score=52.55 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=38.5
Q ss_pred cccccccccccccceEE-ccCCCccccHhhHHHhhcCC-Ccccccccccccce
Q 028047 158 DGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREA-SPKCPVCRMTVRSS 208 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~-lpCgH~~~C~~C~~~~~~~~-~~~CP~CR~~i~~~ 208 (214)
....|.||++....... ..|+|.|+ ..|+.+|.+.. ...||+||+.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH-~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMH-LPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEEC-HHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchhh-HHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34589999998764433 38999997 99999998643 36899999987643
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.85 E-value=6e-06 Score=52.67 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=37.7
Q ss_pred cccccccccccccceEEccCCC-----ccccHhhHHHhhcC-CCccccccccccc
Q 028047 158 DGQLCVVCLTRRRISAFNPCGH-----LVCCRRCAISVERE-ASPKCPVCRMTVR 206 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~lpCgH-----~~~C~~C~~~~~~~-~~~~CP~CR~~i~ 206 (214)
+...|.||++...+..+.||.+ .++ ..|+.+|... .+..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H-~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVH-RSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCC-HHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhH-HHHHHHHHHhCCCCccCCCCCeee
Confidence 4568999998877777899763 676 8999999752 3568999998875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.47 E-value=1.6e-05 Score=67.45 Aligned_cols=50 Identities=16% Similarity=0.351 Sum_probs=37.6
Q ss_pred ccccccccccccccc--------eEEccCCCccccHhhHHHhhcCC----------Ccccccccccccc
Q 028047 157 PDGQLCVVCLTRRRI--------SAFNPCGHLVCCRRCAISVEREA----------SPKCPVCRMTVRS 207 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~--------~~~lpCgH~~~C~~C~~~~~~~~----------~~~CP~CR~~i~~ 207 (214)
+....|.||++...+ +...+|||.|| ..|+..|.+.. .+.||.||++|+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH-~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCH-AVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBC-SGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccc-hHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345689999987655 12357999996 89999997521 1469999999875
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.75 E-value=0.011 Score=40.99 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=26.0
Q ss_pred cccccccccc-ccceEE--ccCCCccccHhhHHHh
Q 028047 159 GQLCVVCLTR-RRISAF--NPCGHLVCCRRCAISV 190 (214)
Q Consensus 159 ~~~C~IC~~~-~~~~~~--lpCgH~~~C~~C~~~~ 190 (214)
+..|.||.+. +.+++. ++|+|.| |..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence 4689999975 667776 9999999 99999983
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.63 E-value=0.024 Score=45.78 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=37.0
Q ss_pred ccccccccccccceEEcc-CCCccccHhhHHHhhcC-CCcccccccccccce
Q 028047 159 GQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVERE-ASPKCPVCRMTVRSS 208 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~lp-CgH~~~C~~C~~~~~~~-~~~~CP~CR~~i~~~ 208 (214)
-..|.||.+-......=+ |+|.+| ..|+..|.+. ....||.|+.....-
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H-~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMH-LPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEEC-HHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHH-HHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 457999998765544433 999997 9999999753 245899999887653
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.65 E-value=0.035 Score=37.92 Aligned_cols=50 Identities=26% Similarity=0.672 Sum_probs=38.3
Q ss_pred cccccccccccccceEEccCC-CccccHhhHHHhhcCCCcccccccccccceEEe
Q 028047 158 DGQLCVVCLTRRRISAFNPCG-HLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 211 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~lpCg-H~~~C~~C~~~~~~~~~~~CP~CR~~i~~~~~i 211 (214)
....|..|+-..+.- +.|. |.. |..|+..+.+. +..||+|..+.-..+++
T Consensus 27 G~~nCKsCWf~~k~L--V~C~dHYL-Cl~CLtlmL~~-SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKGL--VECNNHYL-CLNCLTLLLSV-SNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSSE--EECSSCEE-EHHHHHHTCSS-SSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCCe--eeecchhh-HHHHHHHHHhh-ccCCcccCCcCCcceec
Confidence 345899999888854 4576 655 99999998853 56899999888766554
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.79 E-value=0.058 Score=35.74 Aligned_cols=34 Identities=24% Similarity=0.556 Sum_probs=28.7
Q ss_pred cccccccccccccceEEccC----CCccccHhhHHHhhc
Q 028047 158 DGQLCVVCLTRRRISAFNPC----GHLVCCRRCAISVER 192 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~lpC----gH~~~C~~C~~~~~~ 192 (214)
....|.+|.++..+.-|+.| +|.| |..|.....+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCee-eccccHHHHH
Confidence 35689999999999999988 5999 9999987643
No 76
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=92.44 E-value=0.0038 Score=46.35 Aligned_cols=59 Identities=17% Similarity=0.424 Sum_probs=46.1
Q ss_pred CceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 64 GIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 64 g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
-..||+++.+||+-.... ..+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 44 e~~Rl~TF~~WP~~~~~~-----p~~LA~A--GFyY~g--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P 106 (141)
T 1i4o_C 44 EEARLKSFQNWPDYAHLT-----PRELASA--GLYYTG--IGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFP 106 (141)
T ss_pred HHHHHHHHhcCCCCccCC-----HHHHHHc--CCcCcC--CCCEEEeccCCCEecCCCCCCCHHHHHHHHCc
Confidence 356888999999653222 2556666 899988 578899999999999998 5999999865
No 77
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=90.96 E-value=0.0018 Score=47.57 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=46.1
Q ss_pred CCceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 63 NGIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 63 ~g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
+-..||+++.+||+..... ..+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 47 ~e~~RL~SF~~WP~~~~~~-----pe~LA~A--GFYYtg--~~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P 110 (133)
T 2i3h_A 47 SEELRLASFYDWPLTAEVP-----PELLAAA--GFFHTG--HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFP 110 (133)
T ss_dssp CHHHHHHTTTTCSCTTTSC-----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred CHHHHHHHHhcCCCCcCCC-----HHHHHHc--CCCCcC--CCCEEEecccCCEeCCCCCCCCHHHHHHHHCc
Confidence 3467889999999632222 2456666 899988 578889999999999997 5999999865
No 78
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=88.98 E-value=0.0028 Score=43.87 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=44.5
Q ss_pred CceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 64 GIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 64 g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
-..||+++.+||.-... + ..+|+.+ +|+|.+ .++.+.|+.|...+++|+ .|.+|+++++
T Consensus 21 e~~Rl~TF~~WP~~~~~-~----p~~LA~A--GFyytg--~~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P 83 (94)
T 2poi_A 21 EFNRLKTFANFPSGSPV-S----ASTLARA--GFLYTG--EGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSP 83 (94)
T ss_dssp HHHHHGGGTTCCTTSSS-C----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCccC-C----HHHHHHc--CCCCcC--CCCEEEcccCCCEeCCCCCCCCHHHHHHHHCc
Confidence 35688999999963222 2 2456666 899988 578888999999999997 5999998843
No 79
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=88.64 E-value=0.0037 Score=44.53 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=44.8
Q ss_pred CceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 64 GIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 64 g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
-..||+++.+||+-... + ..+|+.+ +|+|.+ .++.+.|+.|...+++|+ .|.+|+++++
T Consensus 38 e~~RL~TF~~WP~~~~~-~----p~~LA~A--GFyYtg--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP 100 (111)
T 2qra_D 38 EFNRLKTFANFPSGSPV-S----ASTLARA--GFLYTG--EGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSP 100 (111)
T ss_dssp HHHHHHTTTTCCTTCSS-C----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCccC-C----HHHHHHc--CCCCcC--CCCEEEcccCCCEeCCCCCCCCHHHHHHHHCc
Confidence 35788999999963222 2 2456666 999998 578889999999999997 5999998843
No 80
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=87.75 E-value=0.0033 Score=45.65 Aligned_cols=58 Identities=19% Similarity=0.372 Sum_probs=45.0
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..||+++.+||+-.... ..+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 27 ~~Rl~TF~~WP~~~~~~-----p~~LA~A--GFyYtg--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P 88 (124)
T 1jd5_A 27 TARLRTFEAWPRNLKQK-----PHQLAEA--GFFYTG--VGDRVRCFSCGGGLMDWNDNDEPWEQHALWLS 88 (124)
T ss_dssp HHHHHHGGGCCTTCSSC-----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHhhCCCCccCC-----HHHHHHc--CCCCcC--CCCEEEecCCCCEecCCCCCCCHHHHHHHHCc
Confidence 46788898899643222 2556666 999998 578889999999999997 5999999966
No 81
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=87.43 E-value=0.0031 Score=44.58 Aligned_cols=60 Identities=13% Similarity=0.314 Sum_probs=45.4
Q ss_pred CceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 64 GIPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 64 g~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
-..||+++.+||+-....+ ..+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 21 ~~~Rl~TF~~WP~~~~~~~----p~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p 84 (106)
T 2vm5_A 21 EEARLASFRNWPFYVQGIS----PCVLSEA--GFVFTG--KQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFP 84 (106)
T ss_dssp HHHHHHGGGGCCGGGTTSC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCcccCC----HHHHHHc--CCCCcC--CCCEEEccccCCEecCCCCCCCHHHHHHHHCc
Confidence 3567888989996443122 2456666 899988 577788999999999997 6999999866
No 82
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=84.72 E-value=0.0054 Score=44.42 Aligned_cols=58 Identities=10% Similarity=0.221 Sum_probs=44.2
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..|++++.+||+.....+ .+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 21 ~~Rl~TF~~WP~~~~~~p-----~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P 82 (122)
T 3mup_A 21 AARMRTFMYWPSSVPVQP-----EQLASA--GFYYVG--RNDDVKCFCCDGGLRCWESGDDPWVEHAKWFP 82 (122)
T ss_dssp HHHHHGGGGCCTTCSSCH-----HHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHhcCCCcccCCH-----HHHHHC--CCeEeC--CCCeEEecCcCCEecCCCCCCCHHHHHHHHCc
Confidence 468889988996432222 456666 899887 578888999999999997 6999999865
No 83
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=84.33 E-value=0.0097 Score=43.03 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=43.8
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..||+++.+||+- .+ ..+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 29 ~~Rl~TF~~Wp~~---~~----p~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P 88 (121)
T 1g73_C 29 EARIFTFGTWIYS---VN----KEQLARA--GFYALG--EGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 88 (121)
T ss_dssp HHHHHTTTTCCSS---SC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHccCCCC---CC----HHHHHHc--CCCCcC--CCCEEEcCcCCCCcCCCCCCCCHHHHHHHHCc
Confidence 5678899999854 22 2456666 899987 677788999999999997 5999999865
No 84
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=83.86 E-value=0.014 Score=41.90 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=44.7
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..||+++.+||+ ...+ ..+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 16 ~~Rl~TF~~WP~--~~~~----~~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p 76 (116)
T 1se0_A 16 ETRLKTFTDWPL--DWLD----KRQLAQT--GMYFTH--AGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSP 76 (116)
T ss_dssp HHHHTTCTTCCC--TTSC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHhhCCC--CcCC----HHHHHHc--CCcCcC--CCCEEEecCcCCEecCCCCCCCHHHHHHHHCc
Confidence 568889999996 2222 2556666 899988 678888999999999997 5999999865
No 85
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=83.80 E-value=0.0055 Score=42.59 Aligned_cols=58 Identities=10% Similarity=0.201 Sum_probs=43.3
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..||+++.+||+-... + ..+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 15 ~~Rl~TF~~Wp~~~~~-~----~~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p 76 (97)
T 3d9t_A 15 AARMRTFMYWPSSVPV-Q----PEQLASA--GFYYVG--RNDDVKCFCCDGGLRCWESGDDPWVEHAKWFP 76 (97)
T ss_dssp HHHHHGGGGCCTTSSS-C----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHhcCCCcccC-C----HHHHHHc--CCCCcC--CCCEEEecCcCCEecCCCCCCCHHHHHHHhCc
Confidence 5688889889864222 2 2456666 888887 467788888888889997 5999999865
No 86
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=82.15 E-value=0.0092 Score=40.40 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=43.4
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..|++++.+||.-....+ .+|+.+ +|+|.+ .++.+.|+.+...+..|+ .|.+|+++.+
T Consensus 13 ~~Rl~TF~~WP~~~~~~~-----~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p 74 (85)
T 3m1d_A 13 LYRMSTYSTFPAGVPVSE-----RSLARA--GFYYTG--VNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYP 74 (85)
T ss_dssp HHHHHGGGGCCTTCSSCH-----HHHHHT--TEEECS--STTCEEETTTCCEECSCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHhcCCCCCcCCH-----HHHHHC--CCeEeC--CCCEEEeCCcCCEecCCCCCCCHHHHHHHHCc
Confidence 467889989986432222 456666 888888 577888999988899997 5999988844
No 87
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=81.36 E-value=0.013 Score=49.92 Aligned_cols=58 Identities=10% Similarity=0.217 Sum_probs=45.1
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..|++++.+||+.....+ .+|+.+ +|||.+ .++.+.|+.|...++.|. +|.+|+++++
T Consensus 7 ~~Rl~tF~~WP~~~~~~~-----~~lA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p 68 (345)
T 3t6p_A 7 AARMRTFMYWPSSVPVQP-----EQLASA--GFYYVG--RNDDVKCFSCDGGLRCWESGDDPWVEHAKWFP 68 (345)
T ss_dssp HHHHHHGGGSCTTCSSCH-----HHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHhhCCCcccCCH-----HHHHhC--CCeecC--CCCeEEecCCCCCccCCCCCCCHHHHHHHhCC
Confidence 357888989996533233 456666 899988 588899999999999997 6999999866
No 88
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=80.40 E-value=0.016 Score=40.12 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=43.6
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..|++++.+||+- .+ ..+|+.+ +|+|.+ .++.+.|+.|...++.|. .|.+|+++++
T Consensus 15 ~~Rl~TF~~Wp~~---~~----~~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p 74 (95)
T 3hl5_A 15 EARIFTFGTWIYS---VN----KEQLARA--GFYALG--EGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 74 (95)
T ss_dssp HHHHHTTTTCCSS---SC----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHcCCCCC---CC----HHHHHhC--CCeEcC--CCCeEEecCCCCCccCcCCCCCHHHHHHHHCc
Confidence 4678899999863 22 2456666 888887 678888999989999997 5999999865
No 89
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.79 E-value=1.2 Score=30.04 Aligned_cols=49 Identities=33% Similarity=0.807 Sum_probs=34.9
Q ss_pred cccccccccccccc----eEEccC---CCccccHhhHHHhhcCCCcccccccccccc
Q 028047 158 DGQLCVVCLTRRRI----SAFNPC---GHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 158 ~~~~C~IC~~~~~~----~~~lpC---gH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
....|.||-+..-- -+|+-| +--. |+.|..--.+..+..||.|.....+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPv-CrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPA-CRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCC-CHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChh-hHHHHHHHHhccCccccccCCcccc
Confidence 45799999987322 145544 4344 9999987776667789999988763
No 90
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=76.95 E-value=0.029 Score=41.64 Aligned_cols=61 Identities=11% Similarity=0.195 Sum_probs=43.9
Q ss_pred ceeecCCCCCCeeee-ccCHHHHHHHhhhhhhhhhhhhhh-hchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLS-EKTKDLMVVDLVNRSKILFWSGIV-LGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls-~~~~d~Li~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..|++++.+||+-.. ..+. .+|+.+ +|+|.+.- ..+.+.|+.|...++.|. .|.+|+++++
T Consensus 16 ~~Rl~TF~~WP~~~~~~~~p----~~LA~A--GFyy~g~~~~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~p 82 (142)
T 2qfa_A 16 DHRISTFKNWPFLEGCACTP----ERMAEA--GFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSS 82 (142)
T ss_dssp HHHHHTCCSCSCCSSCSSCH----HHHHHT--TEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHhcCCccCCcCCCH----HHHHHc--CCCcCCCCCCCCEEEcCCCCCEecccCCCCCHHHHHHHHCc
Confidence 467889999996542 1222 445666 88888832 126788899988999997 6999999855
No 91
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=76.91 E-value=0.03 Score=41.16 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=44.6
Q ss_pred ceeecCCCCCCeeeeccCHHHHHHHhhhhhhhhhhhhhhhchhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028047 65 IPEIKSCKDLPYFLSEKTKDLMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWN----RWKDRQQRMS 131 (214)
Q Consensus 65 ~~~l~~~~~~p~~ls~~~~d~Li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~----~~~~~~~~~~ 131 (214)
..|++++.+||+- ..+ ..+|+.+ +|+|.+ .++.+.|+.|...++.|+ .|.+|+++++
T Consensus 38 ~~RL~TF~~WP~~--~~~----p~~LA~A--GFYYtG--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~sP 98 (136)
T 3siq_A 38 ETRLKTFTDWPLD--WLD----KRQLAQT--GMYFTH--AGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSP 98 (136)
T ss_dssp HHHHHTTTTCCCT--TSC----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCT
T ss_pred HHHHHHHccCCCC--cCC----HHHHHHC--CCeEcC--CCCeEEEeccCCEecCCCCCCCHHHHHHHHCc
Confidence 5688999999963 222 2456666 899987 678889999999999997 5999999855
No 92
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=65.87 E-value=4.2 Score=38.99 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=44.7
Q ss_pred cCCCccccccccccccccceEEccCCC-ccccHhhHHHhhcCCCcccccccccccc
Q 028047 153 AGDIPDGQLCVVCLTRRRISAFNPCGH-LVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 153 ~~~~~~~~~C~IC~~~~~~~~~lpCgH-~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..+.++.-.|+|-.+-.+|||.+|-|| .+ =+..+.+|... ...||+=|++.+.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~Ty-dR~~I~~wl~~-~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNI-DRSTIKAHLLS-DSTDPFNRMPLKL 938 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEE-CHHHHHHHHhc-CCCCCCCCCCCCc
Confidence 346678899999999999999999985 67 58999999854 5689999988764
No 93
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.58 E-value=1.3 Score=30.35 Aligned_cols=43 Identities=21% Similarity=0.435 Sum_probs=29.2
Q ss_pred ccccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccce
Q 028047 159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 208 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~~ 208 (214)
+..|++|....... |..++|..|-..+.. ...||-|.++.+.+
T Consensus 32 ~~~CP~Cq~eL~~~-----g~~~hC~~C~~~f~~--~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQD-----NGHARCRSCGEFIEM--KALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEE-----TTEEEETTTCCEEEE--EEECTTTCSBCEEE
T ss_pred cccCccCCCcceec-----CCEEECccccchhhc--cccCcchhhHHHHH
Confidence 36899998664321 444458888777653 24699999887654
No 94
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.57 E-value=2.2 Score=31.82 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=30.3
Q ss_pred ccccccccccccc-----ceEEccCCCccccHhhHHHhhcCCCccccccccc
Q 028047 158 DGQLCVVCLTRRR-----ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMT 204 (214)
Q Consensus 158 ~~~~C~IC~~~~~-----~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~ 204 (214)
++..|.+|...+. ...-..|.|.+ |..|.........=.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 4679999998753 34556889998 8999733221222258888754
No 95
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=50.49 E-value=13 Score=23.28 Aligned_cols=45 Identities=20% Similarity=0.455 Sum_probs=27.3
Q ss_pred ccccccccccccceEEccCCCccccHhhHHHhhcCC---Cccccccccc
Q 028047 159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA---SPKCPVCRMT 204 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~---~~~CP~CR~~ 204 (214)
...|.||.+...-..--.|...|| ..|...-.... .=.||.|...
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~H-~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAFH-WRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEEC-HHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCcee-cccCCCccCcCCCCCEECccccCC
Confidence 457999987644222235777775 78875332211 2259999764
No 96
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=44.32 E-value=16 Score=31.04 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=31.6
Q ss_pred cccccccccccccceE-EccCCCccccHhhHH--Hh-hcCCCccccccccccc
Q 028047 158 DGQLCVVCLTRRRISA-FNPCGHLVCCRRCAI--SV-EREASPKCPVCRMTVR 206 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~-~lpCgH~~~C~~C~~--~~-~~~~~~~CP~CR~~i~ 206 (214)
-...|++-......++ ...|.|.- |++=.. .+ .....-.||+|.+.+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCcccC
Confidence 3568999998888876 57899986 544321 11 1122347999988763
No 97
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.78 E-value=2.7 Score=30.57 Aligned_cols=46 Identities=17% Similarity=0.499 Sum_probs=29.8
Q ss_pred ccccccccccccc-----ceEEccCCCccccHhhHHHhhc---CCCccccccccc
Q 028047 158 DGQLCVVCLTRRR-----ISAFNPCGHLVCCRRCAISVER---EASPKCPVCRMT 204 (214)
Q Consensus 158 ~~~~C~IC~~~~~-----~~~~lpCgH~~~C~~C~~~~~~---~~~~~CP~CR~~ 204 (214)
+...|.+|...+. ...-..|.|.+ |..|...... ...=.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 4568999998773 23446788888 8888765421 111248888754
No 98
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.88 E-value=20 Score=30.39 Aligned_cols=48 Identities=27% Similarity=0.519 Sum_probs=31.9
Q ss_pred cccccccccccccceE-EccCCCccccHhhHHH--h-hcCCCccccccccccc
Q 028047 158 DGQLCVVCLTRRRISA-FNPCGHLVCCRRCAIS--V-EREASPKCPVCRMTVR 206 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~-~lpCgH~~~C~~C~~~--~-~~~~~~~CP~CR~~i~ 206 (214)
-...|++-......++ ...|.|.- |.+=..= + .....-.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3568999998888876 57899986 5433221 1 1122346999998764
No 99
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=40.81 E-value=3.1 Score=25.76 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=13.9
Q ss_pred Ccccccccccccc-ccceEEccCCCcc
Q 028047 156 IPDGQLCVVCLTR-RRISAFNPCGHLV 181 (214)
Q Consensus 156 ~~~~~~C~IC~~~-~~~~~~lpCgH~~ 181 (214)
..+...|.||+.. +.+ -|||.+
T Consensus 6 ~~d~~~C~iC~KTKFAD----G~Gh~C 28 (62)
T 2a20_A 6 KGDAPTCGICHKTKFAD----GCGHNC 28 (62)
T ss_dssp SSCCCCCSSSSCSCCCS----SCCEEB
T ss_pred cCCcchhhhhccceecc----CCCccc
Confidence 3456789999853 333 367763
No 100
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=39.61 E-value=18 Score=22.81 Aligned_cols=33 Identities=24% Similarity=0.530 Sum_probs=24.2
Q ss_pred ccccccccccccccceEEccC-CCccccHhhHHHhh
Q 028047 157 PDGQLCVVCLTRRRISAFNPC-GHLVCCRRCAISVE 191 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~~~lpC-gH~~~C~~C~~~~~ 191 (214)
++..-|.||.+. ....-+.| |-.+ |..|....-
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLY-CARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHHT
T ss_pred cCCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHHc
Confidence 345679999988 44556788 6777 899987653
No 101
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.32 E-value=40 Score=21.90 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=8.6
Q ss_pred hhhhchhHHHHHHHHHHHHH
Q 028047 101 GIVLGSLSIGILGYAIVRNW 120 (214)
Q Consensus 101 ~i~~~~~~~~~~~~~~~r~~ 120 (214)
+++.|++.++++..+++|.+
T Consensus 16 gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 102
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=38.87 E-value=30 Score=18.84 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=14.1
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHH
Q 028047 101 GIVLGSLSIGILGYAIVRNWNRWK 124 (214)
Q Consensus 101 ~i~~~~~~~~~~~~~~~r~~~~~~ 124 (214)
.++.|++.+.++....+-+|+-++
T Consensus 11 t~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeEEEcccc
Confidence 445566655555556666777543
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=37.54 E-value=23 Score=25.39 Aligned_cols=45 Identities=16% Similarity=0.485 Sum_probs=28.9
Q ss_pred ccccccccccccceEEccCCCccccHhhHHHhh----------cCCCccccccccc
Q 028047 159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVE----------REASPKCPVCRMT 204 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~----------~~~~~~CP~CR~~ 204 (214)
+..|.||.+.-.-..-=.|-..| |..|+.... ....=.|+.|+.+
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~F-c~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEE-EHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCcCeecCCCCeeEecCCCchhh-hHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 44699999764432223577888 899998641 1122369999754
No 104
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.42 E-value=11 Score=26.08 Aligned_cols=22 Identities=23% Similarity=0.798 Sum_probs=14.3
Q ss_pred cCCCccccHhhHHHhhcCCCccccccccc
Q 028047 176 PCGHLVCCRRCAISVEREASPKCPVCRMT 204 (214)
Q Consensus 176 pCgH~~~C~~C~~~~~~~~~~~CP~CR~~ 204 (214)
.||+.| + ..+. ....||.|+..
T Consensus 72 ~CG~~F-~----~~~~--kPsrCP~CkSe 93 (105)
T 2gmg_A 72 KCGFVF-K----AEIN--IPSRCPKCKSE 93 (105)
T ss_dssp TTCCBC-C----CCSS--CCSSCSSSCCC
T ss_pred hCcCee-c----ccCC--CCCCCcCCCCC
Confidence 788888 2 1222 24589999865
No 105
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=35.58 E-value=31 Score=22.88 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=24.7
Q ss_pred CCCccccccccccccccceEEcc---CCCccccHhhHHHh
Q 028047 154 GDIPDGQLCVVCLTRRRISAFNP---CGHLVCCRRCAISV 190 (214)
Q Consensus 154 ~~~~~~~~C~IC~~~~~~~~~lp---CgH~~~C~~C~~~~ 190 (214)
+....+..|.||-.-..+. ++| |+-+|+ ..|+.+.
T Consensus 10 e~~~~D~~C~VC~~~t~~~-l~pCRvC~RvfH-~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAES-LFPCRVCTRVFH-DGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSC-CSSCSSSSSCCC-HHHHHHH
T ss_pred cCCCCCcccCccccccccc-eecccccccccc-Hhhcccc
Confidence 3455678999998555443 335 567886 8999986
No 106
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=34.14 E-value=27 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=30.9
Q ss_pred cccccccccccce-EEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 160 QLCVVCLTRRRIS-AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 160 ~~C~IC~~~~~~~-~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..|..|....... .+..=|..+ |..|..+.. ...|+.|..+|..
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~y-C~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPV-CKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEE-EHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcCEEEeECCEEe-chHHhCcCc---CccCcccCCcCCc
Confidence 4677777665543 334456666 899998875 3589999999983
No 107
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=33.13 E-value=5.8 Score=25.35 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=28.9
Q ss_pred CccccccccccccccceEEc---cCCCccccHhhHHHhhcC---CCcccccccccccce
Q 028047 156 IPDGQLCVVCLTRRRISAFN---PCGHLVCCRRCAISVERE---ASPKCPVCRMTVRSS 208 (214)
Q Consensus 156 ~~~~~~C~IC~~~~~~~~~l---pCgH~~~C~~C~~~~~~~---~~~~CP~CR~~i~~~ 208 (214)
..+...|.||......-.++ .|.--|+ ..|+..-... ..-.||.|+..+.+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH-~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYH-WPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEE-HHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccc-cccCCCCccCCCCCCEEChhccCchhhc
Confidence 34556899998764332233 3444554 5665432211 123599998876654
No 108
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=32.57 E-value=29 Score=21.26 Aligned_cols=40 Identities=23% Similarity=0.659 Sum_probs=26.1
Q ss_pred cccccccccccceE---EccCCCccccHhhHHHhhcCCCcccccc
Q 028047 160 QLCVVCLTRRRISA---FNPCGHLVCCRRCAISVEREASPKCPVC 201 (214)
Q Consensus 160 ~~C~IC~~~~~~~~---~lpCgH~~~C~~C~~~~~~~~~~~CP~C 201 (214)
..|-.|.....+.. --.|++.| |.+|-.=+- ..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~F-C~dCD~fiH-e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVF-CVDCDVFVH-DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCB-CHHHHHTTT-TTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCc-ccchhHHHH-hhccCCcCC
Confidence 35888888775543 23578888 899954332 222369988
No 109
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=32.00 E-value=9.9 Score=31.54 Aligned_cols=47 Identities=21% Similarity=0.438 Sum_probs=33.3
Q ss_pred ccccccccccccccceEEc----cCCC-ccccHhhHHHhhcCCCccccccccc
Q 028047 157 PDGQLCVVCLTRRRISAFN----PCGH-LVCCRRCAISVEREASPKCPVCRMT 204 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~~~l----pCgH-~~~C~~C~~~~~~~~~~~CP~CR~~ 204 (214)
.....|+||-..+.-.++. .=|+ ..+|.-|...|.-. ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 3456899999998776654 2454 33589998888632 3479999876
No 110
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=31.25 E-value=33 Score=25.17 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=30.8
Q ss_pred cccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 160 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 160 ~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..|..|........+..=|..+ |..|..+.. ...|..|...|..
T Consensus 34 F~C~~C~~~L~~~~f~~~g~~y-C~~~y~~~f---~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 34 LKCSDCHVPLAERCFSRGESVY-CKDDFFKRF---GTKCAACQLGIPP 77 (169)
T ss_dssp SBCTTTCCBCCSCCEESSSCEE-CHHHHHHHH---SCBCTTTCCBCCT
T ss_pred CccCCCCCcCCCCCcccCCeee-ecccccccc---cccccccccccCC
Confidence 4677777665544454556666 899988776 3489999998864
No 111
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=30.36 E-value=32 Score=23.80 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.1
Q ss_pred ccccccccccccceEEccCCCcccc
Q 028047 159 GQLCVVCLTRRRISAFNPCGHLVCC 183 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~lpCgH~~~C 183 (214)
...|..|.......+-|.|||+. |
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vg-C 47 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVY-C 47 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEE-E
T ss_pred CCcCccccCCCCeeeeeecCccc-c
Confidence 45799999988888899999999 7
No 112
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.96 E-value=13 Score=20.17 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=6.1
Q ss_pred ccccccccccc
Q 028047 197 KCPVCRMTVRS 207 (214)
Q Consensus 197 ~CP~CR~~i~~ 207 (214)
.||+|.+.+.+
T Consensus 7 iCP~C~~~l~s 17 (34)
T 3mjh_B 7 ICPQCMKSLGS 17 (34)
T ss_dssp ECTTTCCEESS
T ss_pred CCcHHHHHcCC
Confidence 46666655443
No 113
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.88 E-value=17 Score=22.25 Aligned_cols=13 Identities=31% Similarity=1.007 Sum_probs=9.9
Q ss_pred Ccccccccccccc
Q 028047 195 SPKCPVCRMTVRS 207 (214)
Q Consensus 195 ~~~CP~CR~~i~~ 207 (214)
.+.||.|+.+|.+
T Consensus 6 ~k~CP~C~~~Iek 18 (60)
T 1wd2_A 6 TKECPKCHVTIEK 18 (60)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceECcCCCCeeEe
Confidence 4578888888875
No 114
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=27.71 E-value=28 Score=25.97 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=26.5
Q ss_pred ccccccccccceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 161 LCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 161 ~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
.|..|........+..=|..+ |..|..+.. ...|..|..+|..
T Consensus 89 ~C~~C~~~L~~~~f~~~g~~y-C~~~y~~~f---~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 89 KCSDCHVPLAERCFSRGESVY-CKDDFFKRF---GTKCAACQLGIPP 131 (182)
T ss_dssp SCTTTCCCCSSCCEEETTEEE-CHHHHHHTT---SCCCTTTCCCCCS
T ss_pred ccCCCCCccCCCceeECCEee-ecCcccccc---ccccccCCCccCC
Confidence 555565544333233334555 788887765 3579999998864
No 115
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=27.62 E-value=53 Score=23.86 Aligned_cols=45 Identities=16% Similarity=0.474 Sum_probs=30.4
Q ss_pred ccccccccccccceEEccCCCccccHhhHHHhhc----------CCCccccccccc
Q 028047 159 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER----------EASPKCPVCRMT 204 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~----------~~~~~CP~CR~~ 204 (214)
+..|.+|.+.-.-..--.|-..| |..|+..... ...=.||.|+..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~F-h~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEE-EHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCeecccCCCCcEEeCCCCCCee-eHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 45799999876544334677888 8999985431 223359999843
No 116
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.27 E-value=16 Score=25.04 Aligned_cols=8 Identities=50% Similarity=1.373 Sum_probs=3.7
Q ss_pred cccccccc
Q 028047 198 CPVCRMTV 205 (214)
Q Consensus 198 CP~CR~~i 205 (214)
||+|.+++
T Consensus 50 CPvCgs~l 57 (112)
T 1l8d_A 50 CPVCGREL 57 (112)
T ss_dssp CTTTCCEE
T ss_pred CCCCCCcC
Confidence 45554443
No 117
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.04 E-value=31 Score=23.89 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=30.8
Q ss_pred ccccccccccc---ceEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 160 QLCVVCLTRRR---ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 160 ~~C~IC~~~~~---~~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..|..|..... ...+..=|..+ |..|..+.... ...|..|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~y-C~~cy~~~f~~-~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMIL-CRNDYIRLFGN-SGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEE-CHHHHHHHHCC-CCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeee-cHHHHHHHcCC-CCccccCCCCcCc
Confidence 36777766654 22344456666 89999887621 2279999999985
No 118
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.95 E-value=9.2 Score=25.23 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=4.8
Q ss_pred cccccccccc
Q 028047 198 CPVCRMTVRS 207 (214)
Q Consensus 198 CP~CR~~i~~ 207 (214)
|+-|..-|++
T Consensus 54 C~~C~~LiSk 63 (81)
T 2jrp_A 54 CQNGHGLISK 63 (81)
T ss_dssp CTTTTCCCCT
T ss_pred eccCCCEeec
Confidence 4455444444
No 119
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.41 E-value=23 Score=18.28 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=7.3
Q ss_pred cccccccccc
Q 028047 196 PKCPVCRMTV 205 (214)
Q Consensus 196 ~~CP~CR~~i 205 (214)
-.||+|+...
T Consensus 4 ~~CpvCk~q~ 13 (28)
T 2jvx_A 4 FCCPKCQYQA 13 (28)
T ss_dssp EECTTSSCEE
T ss_pred ccCccccccC
Confidence 4699998654
No 120
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=22.90 E-value=51 Score=23.51 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=21.2
Q ss_pred ccccccccccccceEEccCCCccccH
Q 028047 159 GQLCVVCLTRRRISAFNPCGHLVCCR 184 (214)
Q Consensus 159 ~~~C~IC~~~~~~~~~lpCgH~~~C~ 184 (214)
...|..|.....-.+-|.|||+-||+
T Consensus 34 ~~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 34 GWKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp BCCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CCcCccccCcCceEEeccCCccccCc
Confidence 45799999887778889999998554
No 121
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=22.30 E-value=64 Score=19.48 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=25.0
Q ss_pred ccccccccccccccceEE-ccCCCccccHhhHHHhhc---CCCccccccccc
Q 028047 157 PDGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVER---EASPKCPVCRMT 204 (214)
Q Consensus 157 ~~~~~C~IC~~~~~~~~~-lpCgH~~~C~~C~~~~~~---~~~~~CP~CR~~ 204 (214)
.++..|.+|.+.. +.+. -.|...|| ..|...-.. ...=.||.|+..
T Consensus 9 ~~~~~C~vC~~~g-~ll~CD~C~~~fH-~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG-EIILCDTCPRAYH-MVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS-SEEECSSSSCEEE-HHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC-cEEECCCCChhhh-hhccCCCCCCCCCCceECcccccc
Confidence 3456899998743 2222 23555554 667654211 112359999753
No 122
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=21.72 E-value=43 Score=25.06 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=30.5
Q ss_pred cccccccccccc---eEEccCCCccccHhhHHHhhcCCCcccccccccccc
Q 028047 160 QLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 207 (214)
Q Consensus 160 ~~C~IC~~~~~~---~~~lpCgH~~~C~~C~~~~~~~~~~~CP~CR~~i~~ 207 (214)
..|..|...... ..+..=|..+ |..|..+.... ...|+.|..+|..
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~y-C~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMIL-CRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEE-CHHHHHHHHSC-CEECTTTCCEECT
T ss_pred cccCCCCcccccCCceEEEeCCccc-ccccccccccc-CCccccCCCcccc
Confidence 467777666543 3444456666 89999887621 1169999999964
No 123
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=21.71 E-value=36 Score=16.84 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=13.4
Q ss_pred ccccccccccceEEccCCCccccHhh
Q 028047 161 LCVVCLTRRRISAFNPCGHLVCCRRC 186 (214)
Q Consensus 161 ~C~IC~~~~~~~~~lpCgH~~~C~~C 186 (214)
.|+-|.+--.--.--.||....|..|
T Consensus 2 ~cvscv~fgngfcgdncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECSSSCEEECSCC
T ss_pred cceEeEeecCccccCCcCCcccccCC
Confidence 36666544333333456666655444
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=21.56 E-value=42 Score=22.17 Aligned_cols=31 Identities=19% Similarity=0.540 Sum_probs=22.6
Q ss_pred cccccccccccc----ceEEccCCCccccHhhHHHh
Q 028047 159 GQLCVVCLTRRR----ISAFNPCGHLVCCRRCAISV 190 (214)
Q Consensus 159 ~~~C~IC~~~~~----~~~~lpCgH~~~C~~C~~~~ 190 (214)
...|.+|...+. .----.||++| |..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~-C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF-CGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE-CCcccCCe
Confidence 457999998764 23335799999 89998653
No 125
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=21.56 E-value=25 Score=26.99 Aligned_cols=46 Identities=17% Similarity=0.448 Sum_probs=23.3
Q ss_pred cccccccccccccceEEccCCCccccHhhHHHhhc---CCCccccccccc
Q 028047 158 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER---EASPKCPVCRMT 204 (214)
Q Consensus 158 ~~~~C~IC~~~~~~~~~lpCgH~~~C~~C~~~~~~---~~~~~CP~CR~~ 204 (214)
++..|.+|.+...-..--.|...|| ..|...-.. ...=.||.|+..
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H-~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFH-LTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEEC-TTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccC-CccCCCCCCCCCCCCEEeCceeCc
Confidence 3457999986543111123444553 456532111 111259999865
No 126
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.97 E-value=24 Score=17.80 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=6.6
Q ss_pred ccccccccc
Q 028047 197 KCPVCRMTV 205 (214)
Q Consensus 197 ~CP~CR~~i 205 (214)
.||+|.+..
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 699997653
No 127
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=20.45 E-value=40 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=18.6
Q ss_pred ccccccccccccc-eEEcc--CCCccccH
Q 028047 159 GQLCVVCLTRRRI-SAFNP--CGHLVCCR 184 (214)
Q Consensus 159 ~~~C~IC~~~~~~-~~~lp--CgH~~~C~ 184 (214)
...|..|.....+ .+-|. |||+.|++
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4579999944434 67788 99999543
No 128
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=20.37 E-value=70 Score=15.69 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028047 108 SIGILGYAIVRNWNRWKD 125 (214)
Q Consensus 108 ~~~~~~~~~~r~~~~~~~ 125 (214)
+-.+..+++..+|++++.
T Consensus 4 GKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 4 GKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455666677776654
Done!