BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028048
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 13/160 (8%)
Query: 59 VPDAYRPPPAPTPFDANVRHPQTPPVVQEICSN---------KSDPSVQTTPVPVQDTLG 109
+ +A+R P P P+DA+ R+ ++ +E S+ +SD + V
Sbjct: 73 LSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKW 132
Query: 110 GNSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEY 169
N++ T S D +E SK+ + +K + + ++ + E+EDVCPTCLEEY
Sbjct: 133 ANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMAD----SENMYILSEDEDVCPTCLEEY 188
Query: 170 DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209
+ENP+I+TKC HHFHL+CI+EWMERS+ CPVC + M F+
Sbjct: 189 TSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFN 228
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 159 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPV 212
+D C CLE + ++P +T C+H +HL CI EW +RS CP+C Q + P
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVLRDPA 96
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 142 EVELSKSVHHVVAVIEE--EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTC 199
E L+ + V I++ +D C CLE + +P +T C+H +HL CI EW +RS C
Sbjct: 11 EGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQC 70
Query: 200 PVCNQEMIFDLPV 212
P+C Q + P
Sbjct: 71 PMCWQSISLKDPT 83
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209
E +DVC C E+ IT C H+FH C+ +W+ DTCP+C+Q++ +
Sbjct: 542 EIDDVCAICYHEFTTSAR--ITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209
E DVC C E+ IT C H+FH C+ +W+ DTCP+C+Q++ +
Sbjct: 542 EINDVCAICYHEFTTSAR--ITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209
E DVC C E+ IT C H+FH C+ +W+ DTCP+C+Q++ +
Sbjct: 542 EINDVCAICYHEFTTSAR--ITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 162 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 211
C CL ++ D E R++ KC H FH+ CI W+ +CP C Q ++ + P
Sbjct: 114 CLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQP 164
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Query: 148 SVHHVVAVIEE--------EDVCPTCLEE-YDAENPRIITKCEHHFHLACIFEWMERSDT 198
+VH + A+ E +DVC C +E Y A+ IT+C H FH C+ +W+ D
Sbjct: 599 AVHKISALPEATPAQLQAFDDVCAICYQEMYSAK----ITRCRHFFHGVCLRKWLYVQDR 654
Query: 199 CPVCNQEMIF 208
CP+C++ M++
Sbjct: 655 CPLCHEIMMY 664
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 162 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
C CL ++ D E R++ KC H FH+ CI +W+E+ TCP+C +
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRV 169
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 152 VVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
V++ + + CP CL E++AE I C H FH CI W+ ++++CP+C E+
Sbjct: 78 VISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 160 DVCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
D C CL E+ D + R+I+ C H FH CI W E TCPVC +E+
Sbjct: 152 DQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRREL 199
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 135 LESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWM 193
+ES K++E+ S+ + +I CP CL EY + E R + +C+H FH+ CI EW+
Sbjct: 231 IESYKKVELGESRRLPGTNGII-----CPICLSEYASKETVRCMPECDHCFHVQCIDEWL 285
Query: 194 ERSDTCPVC 202
+ +CPVC
Sbjct: 286 KIHSSCPVC 294
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 111 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD 170
N++ S K LK K + ++L + K+ + E+ + D C C+E Y
Sbjct: 236 NARAQSRKQRQLKADAKKAIGKLQLRTLKQGDKEIGP----------DGDSCAVCIELYK 285
Query: 171 AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPVD 213
+ I C H FH C+ W+ TCP+C +++ L ++
Sbjct: 286 PNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILKALGIE 328
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 111 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD 170
N++ S K LK K + ++L + K+ + E+ + D C C+E Y
Sbjct: 236 NARAQSRKQRQLKADAKKAIGRLQLRTLKQGDREIGP----------DGDSCAVCIELYK 285
Query: 171 AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPVD 213
+ I C H FH C+ W+ TCP+C +++ L ++
Sbjct: 286 PNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILKALGIE 328
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 111 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD 170
N++ S K LK K + ++L + K+ + E+ + D C C+E Y
Sbjct: 236 NARAQSRKQRQLKADAKKAIGRLQLRTLKQGDKEIGP----------DGDSCAVCIELYK 285
Query: 171 AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPVD 213
+ I C H FH C+ W+ TCP+C +++ L ++
Sbjct: 286 PNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILKALGIE 328
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 111 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD 170
N++ S K LK K + ++L + K+ + E+ + D C C+E Y
Sbjct: 239 NARAQSRKQRQLKADAKKAIGRLQLRTQKQGDKEIGP----------DGDSCAVCIELYK 288
Query: 171 AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPVD 213
+ I C H FH C+ W+ TCP+C +++ L ++
Sbjct: 289 PNDLVRILTCNHVFHKTCVDPWLLEHRTCPMCKCDILKALGIE 331
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 154 AVIEEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVC 202
+IE D CP CL E++ E+ R++ KC H FH++CI W+ CP+C
Sbjct: 170 GLIERTD-CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLC 218
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 162 CPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVC 202
C CL ++++ E R++ KC H FH+ CI +W+E+ TCP+C
Sbjct: 123 CSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 164
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 144 ELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVC 202
+L K H +E DVC CLEEY+ + I C H +H C+ W+ ++ TCPVC
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 203 NQEMI 207
Q+++
Sbjct: 282 KQKVV 286
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
+ D+C C ++ + +IT C H FH AC+ +W+ +TCP+C+ ++
Sbjct: 532 QHNDICSICFQDMKSA---VITPCSHFFHAACLKKWLYVQETCPLCHGQL 578
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 144 ELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVC 202
+L K H +E DVC CLEEY+ + I C H +H C+ W+ ++ TCPVC
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 203 NQEMI 207
Q+++
Sbjct: 282 KQKVV 286
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 162 CPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207
CP CL E++ E+ R++ KC H FH+ CI W+ TCP+C ++
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLL 172
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 148 SVHHVVAVIEEEDVCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
S + + +E CP CL E+ D E R+I +C H FH CI W+ TCP+C +
Sbjct: 104 STVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANL 163
Query: 207 I 207
+
Sbjct: 164 V 164
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 162 CPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
CP C E+Y E C H FH +CI W+E DTCPVC + +
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 162 CPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPVDY 214
CP CL E++ CEH FH ACI W+ ++++CP+C E+ D P DY
Sbjct: 79 CPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSP-DY 130
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 162 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
C CL E+ D E R++ KC+H FH CI W+E TCPVC +
Sbjct: 128 CAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 153 VAVIEEEDVCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207
+ + +E C CL E+ D E R+I KC H FH CI W+ TCP+C ++I
Sbjct: 135 LRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLI 190
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 162 CPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
CP C E+Y E C H FH +CI W+E DTCPVC + +
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana
GN=ATL21C PE=3 SV=1
Length = 366
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 135 LESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWM 193
+E+ K++E+ S+ + + VCP CL EY + E R I +C+H FH+ CI W+
Sbjct: 298 IETFKKMELGESRRLSGTNGI-----VCPICLSEYASKETVRFIPECDHCFHVECIDVWL 352
Query: 194 ERSDTCPVCNQ 204
+ +CP+C
Sbjct: 353 KIHGSCPLCRN 363
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 162 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 208
C CL E+ D E+ R++ +C H FH CI W++ CP+C + F
Sbjct: 157 CSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITF 204
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 151 HVVAVIEEEDVCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
+V +E+ C CL E+ D + R++ C H FHL CI W+ + TCP+C + +
Sbjct: 196 NVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 157 EEEDVCPTCLEEYD-AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
E D C CL+++ E R + C H FHL CI W+ R +CP+C +++
Sbjct: 191 ENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 144 ELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVC 202
+L K H +E DVC CL+EY+ + I C H +H C+ W+ ++ TCPVC
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 203 NQEMI 207
Q+++
Sbjct: 282 KQKVV 286
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
+ D+C C Y N +IT C H FH C+ +W+ +TCP+C+ ++
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLCHCQL 578
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMI 207
+E DVC CL+EY+ + I C H +H C+ W+ ++ TCPVC Q+++
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 84 VVQEICSNKSDPSVQTTPVPVQDTLGGNSQETSSKCDDLKEPESKTVANVELESTKELEV 143
+V + C+N + + L NS E + DD ES T L+ T ++
Sbjct: 81 LVSKYCANDTTNEAASESGRSDIILDVNSPERGDQ-DDPFALESSTAG---LDDTLIKKI 136
Query: 144 ELSKSVHHVVAVIEEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVC 202
K H C CL E++ E+ R++ KC H FH+ CI W++ CP+C
Sbjct: 137 GFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLC 196
Query: 203 NQEMI 207
++I
Sbjct: 197 RAKII 201
>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23
PE=1 SV=2
Length = 163
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 137 STKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD-AENPRIITKCEHHFHLACIFEWMER 195
S ELE ++ K +AVI C CLE+ + ++ R++ C H FH C W+
Sbjct: 80 SVLELE-KIPKLTGRELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSN 138
Query: 196 SDTCPVCNQEMIFDLP 211
CPVC E+ +LP
Sbjct: 139 HTVCPVCRAELAPNLP 154
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 144 ELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVC 202
+L K H +E DVC CL+EY+ + I C H +H C+ W+ ++ TCPVC
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 203 NQEMI 207
Q+++
Sbjct: 282 KQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 144 ELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVC 202
+L K H +E DVC CL+EY+ + I C H +H C+ W+ ++ TCPVC
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 203 NQEMI 207
Q+++
Sbjct: 282 KQKVV 286
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 159 EDVCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 204
+ C CL EY +AE R++ +C+H+FHL C+ W++ + +CPVC
Sbjct: 135 DTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRN 181
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 159 EDVCPTCLEEYD-AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
+D C CL+++ E R + C H FHL CI W+ R +CP+C +++
Sbjct: 188 KDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236
>sp|G3X9R7|RN148_MOUSE RING finger protein 148 OS=Mus musculus GN=Rnf148 PE=2 SV=1
Length = 316
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 112 SQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYDA 171
S ++ + LK K + ++L ++ + EL + ED C C + Y A
Sbjct: 229 SNSSTRRQRQLKADVKKAIGQLQLRVLQDGDKELDPN----------EDSCVVCFDMYKA 278
Query: 172 ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207
++ I C+H FH CI W+ TCP+C +++
Sbjct: 279 QDVIRILTCKHFFHKTCIDPWLLAHRTCPMCKCDIL 314
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
+ D+C C Y N +IT C H FH C+ +W+ +TCP+C+ ++
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLCHCQL 578
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 162 CPTCLEEYDAENP--RIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
C CL E++ E+ R++T C H FH CI +W+E + TCPVC + +
Sbjct: 114 CAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNL 160
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 162 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
C CL E+ D E R++ KC+H FH CI W++ TCPVC +
Sbjct: 124 CAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL 169
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCN 203
+ D+C C ++ + +IT C H FH C+ +W+ DTCP+C+
Sbjct: 532 KHNDICAICYQDMKSA---VITPCSHFFHAGCLKKWLYVQDTCPLCH 575
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 162 CPTCLEEYD-AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 204
C CL++ E R + KC+H FHL C+ +W+ R +CP+C Q
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQ 219
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 161 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQE 205
VC + LEE D N R++ C+H FH++C+ W+ TCPVC E
Sbjct: 102 VCLSLLEEKD--NARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTE 144
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 162 CPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERSDTCPVC 202
C CL E+ AE+ R++ KC H FH+ CI W+ + TCP+C
Sbjct: 122 CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLC 163
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 162 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206
C CL E D + R++ C+H FH+ CI W++ + TCP+C + +
Sbjct: 88 CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRV 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,276,584
Number of Sequences: 539616
Number of extensions: 3774453
Number of successful extensions: 12995
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 285
Number of HSP's that attempted gapping in prelim test: 12434
Number of HSP's gapped (non-prelim): 814
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)