Query 028048
Match_columns 214
No_of_seqs 229 out of 1964
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.7 1.2E-16 4.2E-21 108.2 6.6 56 157-212 12-67 (69)
2 1iym_A EL5; ring-H2 finger, ub 99.7 5.7E-17 2E-21 105.0 4.4 51 157-207 3-54 (55)
3 2ep4_A Ring finger protein 24; 99.6 2.4E-16 8.2E-21 108.2 6.2 54 157-210 13-66 (74)
4 1x4j_A Ring finger protein 38; 99.6 1.2E-16 4.1E-21 110.2 3.5 53 157-209 21-73 (75)
5 2ect_A Ring finger protein 126 99.6 3.3E-16 1.1E-20 108.6 5.2 54 157-210 13-66 (78)
6 2l0b_A E3 ubiquitin-protein li 99.6 3E-16 1E-20 112.4 4.4 52 157-208 38-89 (91)
7 2ecl_A Ring-box protein 2; RNF 99.6 4.1E-16 1.4E-20 109.4 4.2 53 157-209 13-77 (81)
8 2ecm_A Ring finger and CHY zin 99.6 1.2E-15 4E-20 98.7 4.9 51 157-207 3-54 (55)
9 2djb_A Polycomb group ring fin 99.5 6.7E-15 2.3E-19 100.6 6.2 55 157-213 13-67 (72)
10 3dpl_R Ring-box protein 1; ubi 99.5 4E-15 1.4E-19 109.7 5.3 52 157-208 35-101 (106)
11 3ng2_A RNF4, snurf, ring finge 99.5 3.2E-15 1.1E-19 101.5 4.3 54 157-210 8-65 (71)
12 2ea6_A Ring finger protein 4; 99.5 4.4E-15 1.5E-19 100.0 4.7 51 157-207 13-67 (69)
13 2d8s_A Cellular modulator of i 99.5 5.8E-15 2E-19 103.4 4.7 53 157-210 13-72 (80)
14 2xeu_A Ring finger protein 4; 99.5 7E-15 2.4E-19 97.6 3.3 53 158-210 2-58 (64)
15 1chc_A Equine herpes virus-1 r 99.5 1.3E-14 4.5E-19 97.7 4.5 49 157-207 3-51 (68)
16 1v87_A Deltex protein 2; ring- 99.5 1.6E-14 5.6E-19 107.0 5.3 52 158-209 24-95 (114)
17 2d8t_A Dactylidin, ring finger 99.5 1.3E-14 4.3E-19 98.9 3.7 49 157-208 13-61 (71)
18 2ecn_A Ring finger protein 141 99.5 9.6E-15 3.3E-19 99.0 2.7 50 157-210 13-62 (70)
19 2ct2_A Tripartite motif protei 99.5 6.9E-14 2.4E-18 98.6 6.5 53 157-209 13-69 (88)
20 4a0k_B E3 ubiquitin-protein li 99.5 5.6E-15 1.9E-19 110.6 0.4 53 157-209 46-113 (117)
21 2yur_A Retinoblastoma-binding 99.5 5.2E-14 1.8E-18 96.7 5.3 51 157-210 13-66 (74)
22 2ysl_A Tripartite motif-contai 99.5 7.1E-14 2.4E-18 95.3 5.5 51 157-210 18-71 (73)
23 2csy_A Zinc finger protein 183 99.4 9.1E-14 3.1E-18 96.9 5.5 48 157-207 13-60 (81)
24 4ayc_A E3 ubiquitin-protein li 99.4 2.6E-14 8.9E-19 109.7 2.5 49 157-208 51-99 (138)
25 2ecy_A TNF receptor-associated 99.4 8.3E-14 2.8E-18 93.4 4.6 51 157-210 13-64 (66)
26 3lrq_A E3 ubiquitin-protein li 99.4 1E-13 3.5E-18 100.8 3.0 52 157-210 20-72 (100)
27 1t1h_A Gspef-atpub14, armadill 99.4 3.6E-13 1.2E-17 93.1 5.4 51 157-210 6-57 (78)
28 2ecw_A Tripartite motif-contai 99.4 4.9E-13 1.7E-17 93.3 5.7 51 157-210 17-73 (85)
29 2ysj_A Tripartite motif-contai 99.4 4.8E-13 1.6E-17 88.8 5.4 43 157-202 18-63 (63)
30 2ct0_A Non-SMC element 1 homol 99.4 4.4E-13 1.5E-17 92.3 4.0 53 157-211 13-67 (74)
31 2ecv_A Tripartite motif-contai 99.4 6.7E-13 2.3E-17 92.6 5.0 51 157-210 17-73 (85)
32 2ckl_A Polycomb group ring fin 99.3 4.4E-13 1.5E-17 98.5 4.0 51 157-209 13-63 (108)
33 2egp_A Tripartite motif-contai 99.3 1.4E-13 4.6E-18 95.2 1.2 50 157-209 10-66 (79)
34 3ztg_A E3 ubiquitin-protein li 99.3 9.2E-13 3.2E-17 93.8 5.4 48 157-207 11-61 (92)
35 2y43_A E3 ubiquitin-protein li 99.3 3.8E-13 1.3E-17 97.2 3.5 50 157-208 20-69 (99)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 3.9E-13 1.3E-17 101.3 3.5 54 157-210 5-62 (133)
37 1g25_A CDK-activating kinase a 99.3 9.9E-13 3.4E-17 87.8 5.1 52 159-210 3-57 (65)
38 2ecj_A Tripartite motif-contai 99.3 8.9E-13 3.1E-17 85.7 3.7 43 157-202 13-58 (58)
39 3fl2_A E3 ubiquitin-protein li 99.3 1E-12 3.6E-17 98.8 4.6 49 157-208 50-99 (124)
40 4ap4_A E3 ubiquitin ligase RNF 99.3 1.6E-12 5.6E-17 97.8 3.4 54 157-210 70-127 (133)
41 1jm7_A BRCA1, breast cancer ty 99.3 2E-12 6.7E-17 95.1 3.1 50 158-210 20-72 (112)
42 3hct_A TNF receptor-associated 99.2 3.1E-12 1.1E-16 95.4 3.9 50 157-209 16-66 (118)
43 1z6u_A NP95-like ring finger p 99.2 4.3E-12 1.5E-16 98.8 4.6 50 157-209 76-126 (150)
44 3l11_A E3 ubiquitin-protein li 99.2 1.2E-12 4E-17 97.2 0.4 48 157-207 13-61 (115)
45 1rmd_A RAG1; V(D)J recombinati 99.2 4.3E-12 1.5E-16 94.2 3.3 50 158-210 22-72 (116)
46 2ckl_B Ubiquitin ligase protei 99.2 7.9E-12 2.7E-16 98.4 4.6 49 158-208 53-102 (165)
47 2kr4_A Ubiquitin conjugation f 99.2 1.1E-11 3.7E-16 87.5 4.8 51 157-210 12-62 (85)
48 1e4u_A Transcriptional repress 99.2 1.7E-11 5.7E-16 85.3 4.9 54 157-210 9-64 (78)
49 3knv_A TNF receptor-associated 99.2 9.2E-12 3.1E-16 96.0 3.8 51 157-210 29-80 (141)
50 2vje_A E3 ubiquitin-protein li 99.2 1.4E-11 4.9E-16 82.3 3.9 48 157-207 6-56 (64)
51 1wgm_A Ubiquitin conjugation f 99.2 2.6E-11 8.8E-16 87.9 5.3 51 157-210 20-71 (98)
52 1bor_A Transcription factor PM 99.2 3.5E-12 1.2E-16 82.9 0.6 48 157-210 4-51 (56)
53 2kre_A Ubiquitin conjugation f 99.2 2.7E-11 9.3E-16 88.1 4.8 51 157-210 27-77 (100)
54 2vje_B MDM4 protein; proto-onc 99.1 5E-11 1.7E-15 79.4 3.9 48 157-207 5-55 (63)
55 2y1n_A E3 ubiquitin-protein li 99.1 6E-11 2.1E-15 105.0 4.5 49 159-210 332-381 (389)
56 1jm7_B BARD1, BRCA1-associated 99.1 1.8E-11 6.1E-16 91.1 0.9 48 157-209 20-68 (117)
57 4ic3_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 82.9 1.7 44 158-208 23-67 (74)
58 3hcs_A TNF receptor-associated 99.0 1.7E-10 5.7E-15 91.1 3.6 50 157-209 16-66 (170)
59 2yu4_A E3 SUMO-protein ligase 99.0 1.4E-10 4.8E-15 83.2 2.8 46 157-205 5-59 (94)
60 1vyx_A ORF K3, K3RING; zinc-bi 99.0 5.1E-10 1.7E-14 73.9 4.3 49 157-208 4-59 (60)
61 3k1l_B Fancl; UBC, ring, RWD, 98.9 2E-10 6.8E-15 99.7 1.7 51 157-207 306-372 (381)
62 2c2l_A CHIP, carboxy terminus 98.9 4.9E-10 1.7E-14 94.2 3.9 50 157-209 206-256 (281)
63 2ecg_A Baculoviral IAP repeat- 98.9 4.2E-10 1.4E-14 77.2 2.0 44 159-209 25-69 (75)
64 2ea5_A Cell growth regulator w 98.8 2.5E-09 8.4E-14 72.2 4.3 45 157-208 13-58 (68)
65 2f42_A STIP1 homology and U-bo 98.8 2.5E-09 8.7E-14 85.4 4.2 51 157-210 104-155 (179)
66 2yho_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 76.2 1.2 43 158-207 17-60 (79)
67 1wim_A KIAA0161 protein; ring 98.8 3.5E-09 1.2E-13 75.6 3.2 48 158-205 4-61 (94)
68 3htk_C E3 SUMO-protein ligase 98.7 3.7E-09 1.3E-13 88.8 3.2 51 157-209 179-233 (267)
69 2bay_A PRE-mRNA splicing facto 98.7 4.3E-09 1.5E-13 69.6 2.7 50 160-211 4-53 (61)
70 3t6p_A Baculoviral IAP repeat- 98.6 9.4E-09 3.2E-13 90.0 1.3 44 157-207 293-337 (345)
71 3vk6_A E3 ubiquitin-protein li 98.2 1.2E-06 4.2E-11 62.8 3.7 45 161-207 3-48 (101)
72 3nw0_A Non-structural maintena 98.1 2.8E-06 9.7E-11 70.6 5.4 52 158-211 179-232 (238)
73 2ko5_A Ring finger protein Z; 97.3 9.3E-05 3.2E-09 52.2 2.1 48 158-210 27-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.0019 6.5E-08 45.8 3.0 35 158-192 2-36 (101)
75 2lri_C Autoimmune regulator; Z 94.4 0.038 1.3E-06 36.4 3.5 46 158-206 11-60 (66)
76 2ysm_A Myeloid/lymphoid or mix 92.8 0.031 1.1E-06 40.4 1.1 38 157-194 5-42 (111)
77 1wil_A KIAA1045 protein; ring 92.8 0.076 2.6E-06 36.6 2.9 35 157-192 13-47 (89)
78 1f62_A Transcription factor WS 91.7 0.097 3.3E-06 32.3 2.3 44 161-204 2-49 (51)
79 2l5u_A Chromodomain-helicase-D 91.7 0.079 2.7E-06 34.2 1.9 46 157-205 9-58 (61)
80 2k16_A Transcription initiatio 91.4 0.038 1.3E-06 37.1 0.1 51 157-207 16-70 (75)
81 1mm2_A MI2-beta; PHD, zinc fin 89.9 0.057 1.9E-06 34.9 -0.1 47 157-206 7-57 (61)
82 2yql_A PHD finger protein 21A; 89.6 0.038 1.3E-06 35.0 -1.1 46 156-204 6-55 (56)
83 1xwh_A Autoimmune regulator; P 88.4 0.09 3.1E-06 34.4 0.0 47 157-206 6-56 (66)
84 1we9_A PHD finger family prote 87.8 0.23 7.9E-06 32.0 1.8 50 156-205 3-58 (64)
85 2puy_A PHD finger protein 21A; 87.3 0.056 1.9E-06 34.7 -1.5 48 157-207 3-54 (60)
86 2e6r_A Jumonji/ARID domain-con 86.6 0.046 1.6E-06 38.4 -2.4 49 157-205 14-66 (92)
87 3v43_A Histone acetyltransfera 86.5 1.2 4E-05 32.0 5.2 33 158-190 4-42 (112)
88 3m62_A Ubiquitin conjugation f 86.5 0.52 1.8E-05 46.0 4.1 51 157-210 889-940 (968)
89 2lbm_A Transcriptional regulat 85.6 0.93 3.2E-05 34.3 4.3 49 154-205 58-117 (142)
90 1fp0_A KAP-1 corepressor; PHD 85.4 0.44 1.5E-05 33.1 2.3 47 157-206 23-73 (88)
91 2cs3_A Protein C14ORF4, MY039 85.4 1.2 4.3E-05 30.3 4.4 39 158-196 14-53 (93)
92 2yt5_A Metal-response element- 84.0 0.35 1.2E-05 31.3 1.2 50 157-206 4-62 (66)
93 1weo_A Cellulose synthase, cat 82.1 1.8 6E-05 30.1 4.1 50 158-207 15-69 (93)
94 3i2d_A E3 SUMO-protein ligase 81.9 1.2 4.2E-05 38.8 4.1 49 160-210 250-302 (371)
95 2vpb_A Hpygo1, pygopus homolog 81.7 1.3 4.6E-05 28.7 3.3 33 157-189 6-40 (65)
96 4fo9_A E3 SUMO-protein ligase 81.0 1.4 4.8E-05 38.3 4.1 49 160-210 216-268 (360)
97 2e6s_A E3 ubiquitin-protein li 80.8 0.3 1E-05 33.0 -0.1 44 161-204 28-76 (77)
98 1wep_A PHF8; structural genomi 80.7 1 3.4E-05 30.3 2.5 48 157-205 10-63 (79)
99 2ku3_A Bromodomain-containing 80.4 1.5 5.3E-05 28.9 3.3 49 156-204 13-65 (71)
100 3asl_A E3 ubiquitin-protein li 80.1 0.28 9.7E-06 32.5 -0.5 44 161-204 20-68 (70)
101 2l43_A N-teminal domain from h 79.2 0.98 3.4E-05 31.2 2.1 51 157-207 23-77 (88)
102 3v43_A Histone acetyltransfera 78.6 0.6 2E-05 33.6 0.9 44 161-204 63-111 (112)
103 2lv9_A Histone-lysine N-methyl 77.7 0.64 2.2E-05 32.7 0.8 44 160-204 29-75 (98)
104 2kgg_A Histone demethylase jar 77.2 2.4 8.3E-05 26.0 3.3 43 161-203 4-52 (52)
105 1z60_A TFIIH basal transcripti 75.9 0.69 2.4E-05 29.6 0.5 43 160-202 16-58 (59)
106 3ql9_A Transcriptional regulat 75.9 2.7 9.2E-05 31.2 3.8 49 154-205 52-111 (129)
107 1weu_A Inhibitor of growth fam 75.7 0.92 3.1E-05 31.6 1.1 45 158-206 35-86 (91)
108 1wen_A Inhibitor of growth fam 75.0 1.1 3.8E-05 29.6 1.4 46 157-206 14-66 (71)
109 1wem_A Death associated transc 74.2 2.7 9.4E-05 27.8 3.2 47 158-205 15-70 (76)
110 2d8v_A Zinc finger FYVE domain 74.1 2.4 8.1E-05 27.7 2.7 34 156-193 5-39 (67)
111 2kwj_A Zinc finger protein DPF 73.6 2.4 8.3E-05 30.4 3.0 33 160-192 2-41 (114)
112 3ask_A E3 ubiquitin-protein li 72.6 0.96 3.3E-05 36.8 0.7 45 160-204 175-224 (226)
113 1joc_A EEA1, early endosomal a 70.1 4 0.00014 29.9 3.5 38 155-192 65-103 (125)
114 2xb1_A Pygopus homolog 2, B-ce 68.1 2.8 9.4E-05 29.8 2.2 47 160-206 4-62 (105)
115 1zbd_B Rabphilin-3A; G protein 67.9 2.3 7.9E-05 31.7 1.8 34 157-190 53-88 (134)
116 3t7l_A Zinc finger FYVE domain 67.2 4.4 0.00015 27.8 3.1 37 157-193 18-55 (90)
117 1wev_A Riken cDNA 1110020M19; 66.6 1.5 5.1E-05 30.2 0.5 50 157-206 14-73 (88)
118 2zet_C Melanophilin; complex, 64.6 3.7 0.00013 31.2 2.5 32 158-189 67-100 (153)
119 2gmg_A Hypothetical protein PF 62.9 1.4 4.8E-05 31.5 -0.2 31 175-210 68-98 (105)
120 4gne_A Histone-lysine N-methyl 62.5 3.5 0.00012 29.5 1.8 43 157-204 13-61 (107)
121 1z2q_A LM5-1; membrane protein 62.1 7.2 0.00025 26.3 3.4 37 156-192 18-55 (84)
122 3shb_A E3 ubiquitin-protein li 62.1 0.87 3E-05 30.7 -1.4 44 161-204 28-76 (77)
123 3o70_A PHD finger protein 13; 61.7 3.5 0.00012 26.8 1.6 47 157-204 17-66 (68)
124 2ysm_A Myeloid/lymphoid or mix 60.4 1.1 3.9E-05 31.9 -1.1 44 161-204 56-103 (111)
125 2yw8_A RUN and FYVE domain-con 59.4 6.1 0.00021 26.5 2.6 37 156-192 16-53 (82)
126 1wew_A DNA-binding family prot 59.3 7.6 0.00026 25.8 3.0 48 158-206 15-73 (78)
127 1wfk_A Zinc finger, FYVE domai 59.1 6.5 0.00022 26.9 2.7 37 156-192 6-43 (88)
128 1x4u_A Zinc finger, FYVE domai 56.8 8.3 0.00028 25.9 2.9 36 156-191 11-47 (84)
129 3c6w_A P28ING5, inhibitor of g 56.6 1.5 5.2E-05 27.8 -0.9 43 158-204 8-57 (59)
130 1y02_A CARP2, FYVE-ring finger 56.4 1.4 5E-05 32.2 -1.1 48 157-204 17-65 (120)
131 3a1b_A DNA (cytosine-5)-methyl 56.2 7.7 0.00026 29.7 2.9 39 154-195 74-114 (159)
132 2a20_A Regulating synaptic mem 54.2 8.6 0.00029 24.5 2.4 48 157-204 7-59 (62)
133 2vnf_A ING 4, P29ING4, inhibit 53.7 1.7 6E-05 27.6 -1.0 43 158-204 9-58 (60)
134 2ri7_A Nucleosome-remodeling f 51.5 6.7 0.00023 29.9 1.9 47 157-204 6-58 (174)
135 2pv0_B DNA (cytosine-5)-methyl 50.9 13 0.00045 32.5 3.9 46 156-204 90-147 (386)
136 3mjh_B Early endosome antigen 50.8 3.8 0.00013 23.1 0.3 14 158-171 4-17 (34)
137 1vfy_A Phosphatidylinositol-3- 47.2 15 0.00051 23.9 2.9 34 159-192 11-45 (73)
138 1wee_A PHD finger family prote 46.8 5.8 0.0002 25.9 0.8 47 158-205 15-66 (72)
139 2apo_B Ribosome biogenesis pro 46.8 12 0.0004 23.9 2.2 19 196-214 18-36 (60)
140 2jvx_A NF-kappa-B essential mo 45.6 5.3 0.00018 21.5 0.3 11 197-207 4-14 (28)
141 2o35_A Hypothetical protein DU 45.1 9.1 0.00031 27.0 1.6 12 184-195 43-54 (105)
142 3fyb_A Protein of unknown func 44.8 9.3 0.00032 26.9 1.6 11 184-194 42-52 (104)
143 3vhs_A ATPase wrnip1; zinc fin 43.7 5.9 0.0002 20.8 0.3 10 198-207 8-17 (29)
144 3zyq_A Hepatocyte growth facto 43.1 14 0.00048 29.6 2.7 36 158-193 163-199 (226)
145 1dvp_A HRS, hepatocyte growth 42.7 12 0.0004 29.8 2.2 35 158-192 160-195 (220)
146 3mpx_A FYVE, rhogef and PH dom 41.9 5.4 0.00019 34.7 0.0 50 157-206 373-430 (434)
147 4ayb_P DNA-directed RNA polyme 40.6 1.7 5.7E-05 26.5 -2.4 31 177-209 6-36 (48)
148 2kwj_A Zinc finger protein DPF 39.1 9.3 0.00032 27.3 0.9 46 161-206 60-109 (114)
149 2jmo_A Parkin; IBR, E3 ligase, 39.1 2.1 7.2E-05 28.8 -2.5 19 179-199 55-73 (80)
150 1wd2_A Ariadne-1 protein homol 36.5 5.2 0.00018 25.4 -0.7 37 160-196 7-48 (60)
151 2aus_D NOP10, ribosome biogene 35.7 17 0.00057 23.2 1.6 19 196-214 17-35 (60)
152 2jne_A Hypothetical protein YF 34.4 13 0.00045 26.1 1.0 39 160-207 33-72 (101)
153 2pk7_A Uncharacterized protein 34.1 9.4 0.00032 25.0 0.2 18 191-208 3-20 (69)
154 2cu8_A Cysteine-rich protein 2 33.8 30 0.001 22.0 2.7 39 159-207 9-47 (76)
155 2dj7_A Actin-binding LIM prote 32.2 36 0.0012 22.1 3.0 40 158-207 14-53 (80)
156 3o7a_A PHD finger protein 13 v 31.8 15 0.0005 22.2 0.8 41 164-204 8-51 (52)
157 2csz_A Synaptotagmin-like prot 31.6 21 0.00073 23.8 1.7 32 157-188 23-56 (76)
158 1lv3_A Hypothetical protein YA 31.3 17 0.00057 23.8 1.1 13 197-209 10-22 (68)
159 3kqi_A GRC5, PHD finger protei 31.3 30 0.001 22.5 2.4 46 160-205 10-61 (75)
160 6rxn_A Rubredoxin; electron tr 31.1 9.1 0.00031 23.0 -0.2 8 198-205 32-39 (46)
161 1iml_A CRIP, cysteine rich int 31.1 21 0.00071 22.8 1.6 44 159-206 27-71 (76)
162 1m3v_A FLIN4, fusion of the LI 30.7 33 0.0011 24.2 2.8 49 160-208 33-81 (122)
163 1zfo_A LAsp-1; LIM domain, zin 30.0 24 0.00082 18.9 1.5 15 196-210 3-17 (31)
164 2rsd_A E3 SUMO-protein ligase 30.0 13 0.00044 23.9 0.3 46 158-204 9-64 (68)
165 2xjy_A Rhombotin-2; oncoprotei 29.4 40 0.0014 23.8 3.1 48 160-207 30-77 (131)
166 2ct7_A Ring finger protein 31; 28.8 4.5 0.00015 27.4 -2.2 18 175-192 44-61 (86)
167 1x62_A C-terminal LIM domain p 28.5 30 0.001 22.3 2.0 38 158-206 14-51 (79)
168 2lcq_A Putative toxin VAPC6; P 28.4 16 0.00054 27.6 0.7 26 175-206 133-158 (165)
169 2co8_A NEDD9 interacting prote 28.3 34 0.0011 22.3 2.3 40 158-207 14-53 (82)
170 3pwf_A Rubrerythrin; non heme 26.9 28 0.00097 26.6 1.9 24 175-205 139-162 (170)
171 1x63_A Skeletal muscle LIM-pro 26.6 54 0.0019 21.0 3.1 39 160-207 16-54 (82)
172 2jny_A Uncharacterized BCR; st 26.4 8.8 0.0003 25.0 -1.0 11 196-206 10-20 (67)
173 2jmi_A Protein YNG1, ING1 homo 25.9 18 0.00062 24.8 0.5 44 157-204 24-75 (90)
174 1wyh_A SLIM 2, skeletal muscle 25.4 59 0.002 20.2 3.0 39 160-207 6-44 (72)
175 1x4l_A Skeletal muscle LIM-pro 25.1 30 0.001 21.7 1.5 40 159-207 5-46 (72)
176 2kdx_A HYPA, hydrogenase/ureas 23.5 27 0.00091 24.9 1.1 25 175-205 74-99 (119)
177 3f6q_B LIM and senescent cell 23.4 35 0.0012 21.1 1.5 41 159-208 11-51 (72)
178 2l3k_A Rhombotin-2, linker, LI 22.5 44 0.0015 23.6 2.1 34 160-194 37-70 (123)
179 3c5k_A HD6, histone deacetylas 21.9 47 0.0016 23.5 2.1 24 159-185 24-47 (109)
180 1lko_A Rubrerythrin all-iron(I 21.9 26 0.00089 27.2 0.8 24 176-205 157-180 (191)
181 2dar_A PDZ and LIM domain prot 21.4 46 0.0016 22.0 1.9 38 159-207 25-62 (90)
182 2kpi_A Uncharacterized protein 21.0 7.3 0.00025 24.4 -2.1 8 198-205 12-19 (56)
183 2d8x_A Protein pinch; LIM doma 20.8 31 0.0011 21.5 0.9 37 160-207 6-42 (70)
184 1x4k_A Skeletal muscle LIM-pro 20.6 67 0.0023 19.9 2.5 39 160-207 6-44 (72)
185 1x68_A FHL5 protein; four-and- 20.6 67 0.0023 20.3 2.6 40 160-207 6-46 (76)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=108.19 Aligned_cols=56 Identities=27% Similarity=0.722 Sum_probs=49.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPV 212 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~~~ 212 (214)
+++..|+||++.|..+..++.++|||.||..||.+|++++.+||+||+.+....+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 45567999999998777788999999999999999999999999999998766543
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=5.7e-17 Score=104.98 Aligned_cols=51 Identities=27% Similarity=0.774 Sum_probs=45.5
Q ss_pred CCCCcccccccccCCCCCeEEcC-CCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
+++..|+||++.|..++....++ |||.||..||.+|++++.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45677999999998777777776 9999999999999999999999999875
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=108.21 Aligned_cols=54 Identities=30% Similarity=0.838 Sum_probs=47.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
+++..|+||++.|........++|+|.||..||.+|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 456689999999987777888899999999999999999999999999886544
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=110.17 Aligned_cols=53 Identities=25% Similarity=0.785 Sum_probs=47.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~ 209 (214)
+++..|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45678999999998877788899999999999999999999999999988643
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=3.3e-16 Score=108.60 Aligned_cols=54 Identities=33% Similarity=0.783 Sum_probs=48.2
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
++...|+||++.|.....++.++|+|.||..||.+|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 456789999999987777888999999999999999999999999999986654
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.61 E-value=3e-16 Score=112.39 Aligned_cols=52 Identities=35% Similarity=0.765 Sum_probs=47.0
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
+++..|+|||+.|..++.++.++|||.||..||.+|++.+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4567899999999888888889999999999999999999999999998753
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-16 Score=109.42 Aligned_cols=53 Identities=28% Similarity=0.772 Sum_probs=42.1
Q ss_pred CCCCcccccccccCC-----------CC-CeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDA-----------EN-PRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~-----------~~-~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~ 209 (214)
.+++.|+||++.|.. ++ .+.+++|+|.||..||.+||+++.+||+||+.+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 355668888888843 33 344556999999999999999999999999988653
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.58 E-value=1.2e-15 Score=98.65 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=44.0
Q ss_pred CCCCcccccccccCC-CCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
.++..|+||++.|.. ++.++.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 345679999999843 456788999999999999999999999999999763
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.7e-15 Score=100.58 Aligned_cols=55 Identities=27% Similarity=0.514 Sum_probs=46.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCCCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPVD 213 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~~~~ 213 (214)
++...|+||++.|.. ++.+++|||.||..||.+|++.+.+||+||+.+..++++.
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 456689999999854 4555599999999999999999999999999998877664
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.55 E-value=4e-15 Score=109.67 Aligned_cols=52 Identities=29% Similarity=0.612 Sum_probs=44.5
Q ss_pred CCCCcccccccccCCC---------------CCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028048 157 EEEDVCPTCLEEYDAE---------------NPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 157 ee~~~C~ICle~~~~~---------------~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
.+++.|+||++.|... ..++.++|+|.||..||.+||+++.+||+||+.+.+
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 4567899999998643 246778999999999999999999999999998654
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=3.2e-15 Score=101.45 Aligned_cols=54 Identities=24% Similarity=0.669 Sum_probs=46.4
Q ss_pred CCCCcccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
+++..|+||++.|.. +...+.++|||.||..||.+|++++.+||+||+.+..++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 456779999999843 355688999999999999999999999999999987654
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-15 Score=100.01 Aligned_cols=51 Identities=25% Similarity=0.720 Sum_probs=44.0
Q ss_pred CCCCcccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
.+...|+||++.|.. +..+++++|||.||..||.+|++.+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 456789999999853 344578999999999999999999999999999875
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.8e-15 Score=103.43 Aligned_cols=53 Identities=38% Similarity=0.874 Sum_probs=45.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCC-----CcccHHHHHHHHhcC--CCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCE-----HHFHLACIFEWMERS--DTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~-----H~Fh~~CI~~Wl~~~--~tCPvCr~~~~~~~ 210 (214)
.+++.|.|||++|..++.+ +++|+ |.||..||++||+.+ .+||+||+.+.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 5567899999999877766 58996 999999999999876 48999999997765
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=7e-15 Score=97.59 Aligned_cols=53 Identities=25% Similarity=0.674 Sum_probs=45.0
Q ss_pred CCCcccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 158 EEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 158 e~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
++..|+||++.|.. +..++.++|||.||..||.+|++++.+||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 34679999999853 345578999999999999999999999999999886654
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.50 E-value=1.3e-14 Score=97.74 Aligned_cols=49 Identities=33% Similarity=0.826 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
+++..|+||++.+. ++.+.++|||.||..||.+|++++.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 45567999999984 45688999999999999999999999999999874
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.6e-14 Score=106.96 Aligned_cols=52 Identities=31% Similarity=0.652 Sum_probs=41.5
Q ss_pred CCCcccccccccCCCC---------------CeEEcCCCCcccHHHHHHHH-----hcCCCCCcccccccCC
Q 028048 158 EEDVCPTCLEEYDAEN---------------PRIITKCEHHFHLACIFEWM-----ERSDTCPVCNQEMIFD 209 (214)
Q Consensus 158 e~~~C~ICle~~~~~~---------------~~~~l~C~H~Fh~~CI~~Wl-----~~~~tCPvCr~~~~~~ 209 (214)
.++.|+|||+.|.... ...+++|+|.||..||.+|| +.+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3457999999985432 34578999999999999999 4567999999977543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=98.94 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
.+...|+||++.+.. .+.++|||.||..||.+|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 455679999999854 5678999999999999999999999999998753
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.6e-15 Score=99.04 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=43.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
.+...|+||++.+.. +.++|||.||..||.+|++++.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456789999999864 67899999999999999999999999999886554
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.9e-14 Score=98.59 Aligned_cols=53 Identities=25% Similarity=0.590 Sum_probs=45.1
Q ss_pred CCCCcccccccccCCCCC-eEEcCCCCcccHHHHHHHHhcC---CCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERS---DTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl~~~---~tCPvCr~~~~~~ 209 (214)
++...|+||++.|...+. .+.++|||.||..||.+|++.+ .+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 556789999999966543 6788999999999999999886 7899999987654
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.46 E-value=5.6e-15 Score=110.58 Aligned_cols=53 Identities=28% Similarity=0.606 Sum_probs=1.6
Q ss_pred CCCCcccccccccCCC---------------CCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAE---------------NPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~---------------~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~ 209 (214)
.+++.|+||++.|... ..+..++|+|.||..||.+||+++.+||+||+++.+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 4567899999999541 1334468999999999999999999999999987554
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.46 E-value=5.2e-14 Score=96.73 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=42.2
Q ss_pred CCCCcccccccccCCCCCeEEcC-CCCcccHHHHHHHHhcC--CCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERS--DTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~~--~tCPvCr~~~~~~~ 210 (214)
+++..|+||++.|.. .+.++ |||.||..||.+|++.+ .+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 455689999999864 45688 99999999999999876 68999999865444
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7.1e-14 Score=95.29 Aligned_cols=51 Identities=31% Similarity=0.704 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHh---cCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---~~~tCPvCr~~~~~~~ 210 (214)
++...|+||++.|.. .+.++|||.||..||.+|++ ....||+||+.+..++
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 456789999999864 56779999999999999997 4568999999886554
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=9.1e-14 Score=96.93 Aligned_cols=48 Identities=27% Similarity=0.613 Sum_probs=42.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
++...|+||++.|.. .++++|||.||..||.+|++...+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 445689999999854 567999999999999999999999999999874
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.44 E-value=2.6e-14 Score=109.73 Aligned_cols=49 Identities=35% Similarity=0.782 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
+++..|+||++.|.. +++++|||.||..||.+|++++.+||+||+.+..
T Consensus 51 ~~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 445679999999854 5678999999999999999999999999998743
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.3e-14 Score=93.42 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHH-hcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM-ERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl-~~~~tCPvCr~~~~~~~ 210 (214)
++...|+||++.+.. .+.++|||.||..||.+|+ +.+.+||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 456789999999854 3458999999999999999 45678999999987654
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=100.76 Aligned_cols=52 Identities=23% Similarity=0.625 Sum_probs=43.1
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-CCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-~tCPvCr~~~~~~~ 210 (214)
+++..|+||++.|.. ++.+++|||.||..||.+|++.+ .+||+||+.+..++
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 455679999999964 34339999999999999999988 69999999886543
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.39 E-value=3.6e-13 Score=93.09 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=43.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCPvCr~~~~~~~ 210 (214)
.++..|+||++.|.. .++++|||.||..||.+|++. +.+||+||+.+....
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 456789999999854 567899999999999999987 789999999886543
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=4.9e-13 Score=93.29 Aligned_cols=51 Identities=37% Similarity=0.724 Sum_probs=43.1
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc------CCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER------SDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~------~~tCPvCr~~~~~~~ 210 (214)
++...|+||++.|.. .++++|||.||..||.+|++. ...||+||+.+..++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 456689999999854 457899999999999999988 678999999886543
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.8e-13 Score=88.75 Aligned_cols=43 Identities=37% Similarity=0.851 Sum_probs=36.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHh---cCCCCCcc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVC 202 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~---~~~tCPvC 202 (214)
+++..|+||++.|.. .+.++|||.||..||.+|++ ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 556789999999864 45679999999999999998 45689998
No 30
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4.4e-13 Score=92.32 Aligned_cols=53 Identities=21% Similarity=0.610 Sum_probs=44.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC--CCCCcccccccCCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--DTCPVCNQEMIFDLP 211 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~--~tCPvCr~~~~~~~~ 211 (214)
+..+.|+||++.+..+ .....|+|.||..||.+||+.+ .+||+||+.+.++.+
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 4557899999999753 4556999999999999999887 899999999877654
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.7e-13 Score=92.57 Aligned_cols=51 Identities=31% Similarity=0.668 Sum_probs=43.1
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc------CCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER------SDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~------~~tCPvCr~~~~~~~ 210 (214)
++...|+||++.|.. .+.++|||.||..||..|++. ...||+||+.+..++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 456789999999854 456799999999999999987 789999999886543
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.35 E-value=4.4e-13 Score=98.46 Aligned_cols=51 Identities=25% Similarity=0.612 Sum_probs=43.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~ 209 (214)
+++..|+||++.|.. ++.+++|||.||..||..|++.+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 456789999999854 444459999999999999999999999999988654
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-13 Score=95.22 Aligned_cols=50 Identities=34% Similarity=0.717 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-------CCCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-------SDTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-------~~tCPvCr~~~~~~ 209 (214)
+++..|+||++.|.. .+.++|||.||..||.+|++. ...||+||+.+..+
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 566789999999854 456899999999999999987 67899999988654
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.34 E-value=9.2e-13 Score=93.81 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCCCCeEEcC-CCCcccHHHHHHHHhcC--CCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERS--DTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~~--~tCPvCr~~~~ 207 (214)
+++..|+||++.|.. +++++ |||.||..||.+|+..+ ..||+||+.+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 556789999999864 45778 99999999999999754 58999999874
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.8e-13 Score=97.23 Aligned_cols=50 Identities=24% Similarity=0.648 Sum_probs=42.0
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
++...|+||++.|.. ++.+++|||.||..||.+|++.+.+||+||+.+..
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345679999999864 34444999999999999999999999999998764
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=3.9e-13 Score=101.26 Aligned_cols=54 Identities=24% Similarity=0.669 Sum_probs=45.5
Q ss_pred CCCCcccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
.++..|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 355679999999854 344588999999999999999999999999999886543
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=9.9e-13 Score=87.81 Aligned_cols=52 Identities=21% Similarity=0.554 Sum_probs=41.0
Q ss_pred CCccccccc-ccCCC-CCeEEcCCCCcccHHHHHHHHhc-CCCCCcccccccCCC
Q 028048 159 EDVCPTCLE-EYDAE-NPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 210 (214)
Q Consensus 159 ~~~C~ICle-~~~~~-~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCPvCr~~~~~~~ 210 (214)
+..|+||++ .|... ...++++|||.||..||.+|+.+ +..||+||+.+..++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 457999999 67443 23356899999999999999765 467999999886544
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8.9e-13 Score=85.71 Aligned_cols=43 Identities=44% Similarity=0.983 Sum_probs=36.1
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHH---hcCCCCCcc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM---ERSDTCPVC 202 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl---~~~~tCPvC 202 (214)
++...|+||++.|.. .++++|||.||..||.+|+ +++.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456789999999865 3568999999999999995 456889998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=98.77 Aligned_cols=49 Identities=27% Similarity=0.465 Sum_probs=42.1
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIF 208 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCPvCr~~~~~ 208 (214)
+++..|+||++.|.. ++.++|||.||..||..|++.+. +||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 455689999999964 66789999999999999998654 99999998865
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.6e-12 Score=97.82 Aligned_cols=54 Identities=24% Similarity=0.669 Sum_probs=45.9
Q ss_pred CCCCcccccccccCC----CCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~----~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
++...|+||++.|.. +...+.++|||.||..||.+|++.+++||+||+.+..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 556789999999853 344578999999999999999999999999999986554
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=2e-12 Score=95.14 Aligned_cols=50 Identities=28% Similarity=0.718 Sum_probs=41.4
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC---CCCcccccccCCC
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD---TCPVCNQEMIFDL 210 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~---tCPvCr~~~~~~~ 210 (214)
+...|+||++.|.. .+.++|||.||..||.+|++.+. +||+||+.+....
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 34579999999854 44689999999999999998764 8999999886544
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=3.1e-12 Score=95.45 Aligned_cols=50 Identities=32% Similarity=0.681 Sum_probs=42.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCPvCr~~~~~~ 209 (214)
++...|+||++.+.. .+.++|||.||..||.+|++.+. +||+||+.+..+
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 556689999999864 56789999999999999998775 999999988654
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.24 E-value=4.3e-12 Score=98.84 Aligned_cols=50 Identities=22% Similarity=0.517 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCPvCr~~~~~~ 209 (214)
++...|+||++.|.. .+.++|||.||..||.+|++... +||+||+.+...
T Consensus 76 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 345689999999864 56789999999999999998765 899999998765
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.22 E-value=1.2e-12 Score=97.18 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=40.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCPvCr~~~~ 207 (214)
+++..|+||++.|.. .+.++|||.||..||.+|++. +.+||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 445679999999864 567799999999999999976 678999999875
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.22 E-value=4.3e-12 Score=94.23 Aligned_cols=50 Identities=22% Similarity=0.485 Sum_probs=42.5
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCcccccccCCC
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 210 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCPvCr~~~~~~~ 210 (214)
++..|+||++.|.. ++.++|||.||..||.+|++. ..+||+||+.+...+
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 44679999999854 566899999999999999987 679999999886543
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.21 E-value=7.9e-12 Score=98.40 Aligned_cols=49 Identities=27% Similarity=0.735 Sum_probs=41.2
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCcccccccC
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIF 208 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCPvCr~~~~~ 208 (214)
+...|+||++.|.. ++.+++|||.||..||.+|++. +.+||+||+.+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34579999999864 4555699999999999999987 7889999998743
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.21 E-value=1.1e-11 Score=87.52 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=44.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
.++..|+||++.|.. +++++|||.|+..||.+|+....+||+||+.+....
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 456789999999965 677889999999999999999999999999886543
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.19 E-value=1.7e-11 Score=85.28 Aligned_cols=54 Identities=20% Similarity=0.503 Sum_probs=41.0
Q ss_pred CCCCcccccccccCCCCCeEE-cCCCCcccHHHHHHHHh-cCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRII-TKCEHHFHLACIFEWME-RSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~-l~C~H~Fh~~CI~~Wl~-~~~tCPvCr~~~~~~~ 210 (214)
+++..|+||++.+...+.... ++|||.||..||.+|++ ....||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 566789999998865433321 34999999999999984 3578999999875443
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.18 E-value=9.2e-12 Score=96.02 Aligned_cols=51 Identities=20% Similarity=0.560 Sum_probs=42.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC-CCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~-tCPvCr~~~~~~~ 210 (214)
+++..|+||++.+.. .+.++|||.||..||.+|++... +||+||+++.+++
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 80 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCT
T ss_pred CcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccc
Confidence 556789999999865 46789999999999999998765 8999999875543
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.17 E-value=1.4e-11 Score=82.31 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCCCCeEEc--CCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIIT--KCEHH-FHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l--~C~H~-Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
+++..|.||++.+.. .+.+ +|||. |+..|+..|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 345679999998744 3444 99999 899999999999999999999873
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.17 E-value=2.6e-11 Score=87.89 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=44.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCC-CcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCE-HHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
.++..|+||++.|.. +++++|| |.|+..||.+|+....+||+||+.+....
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 456789999999965 6788999 99999999999998999999999886554
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=3.5e-12 Score=82.95 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=40.0
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
++...|+||++.|.. .++++|||.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 456689999999965 467899999999999885 668999999886554
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.15 E-value=2.7e-11 Score=88.07 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=44.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
.++..|+||++.|.. +++++|||.|+..||.+|+....+||+||..+....
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 456789999999965 667889999999999999998899999999886544
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.10 E-value=5e-11 Score=79.35 Aligned_cols=48 Identities=19% Similarity=0.433 Sum_probs=39.6
Q ss_pred CCCCcccccccccCCCCCeEEc--CCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIIT--KCEHH-FHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l--~C~H~-Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
+....|.||++.... ..++ +|||. ||..|+.+|.+++..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345679999997643 3344 99998 999999999998899999999873
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.08 E-value=6e-11 Score=105.05 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=42.3
Q ss_pred CCcccccccccCCCCCeEEcCCCCcccHHHHHHHHh-cCCCCCcccccccCCC
Q 028048 159 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME-RSDTCPVCNQEMIFDL 210 (214)
Q Consensus 159 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~-~~~tCPvCr~~~~~~~ 210 (214)
...|+||++.+.. ++.++|||.||..||..|++ .+.+||+||+.+....
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4679999999854 67899999999999999998 7889999999875443
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=1.8e-11 Score=91.15 Aligned_cols=48 Identities=25% Similarity=0.572 Sum_probs=40.0
Q ss_pred CCCCcccccccccCCCCCeEEc-CCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIIT-KCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l-~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~ 209 (214)
+++..|+||++.|.. ++++ +|||.||..||..|++ ..||+||+.+...
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 445779999999854 3455 9999999999999998 7899999988544
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=3e-11 Score=82.93 Aligned_cols=44 Identities=30% Similarity=0.692 Sum_probs=37.7
Q ss_pred CCCcccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCcccccccC
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
++..|+||++.+.. .+.++|||. ||..|+..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 44679999998855 678899999 999999999 789999998743
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.99 E-value=1.7e-10 Score=91.11 Aligned_cols=50 Identities=32% Similarity=0.683 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-CCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-~tCPvCr~~~~~~ 209 (214)
++...|+||++.|.. ++.++|||.||..||.+|++.+ .+||+||+.+..+
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 556789999999865 4678999999999999999775 4999999988654
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.4e-10 Score=83.20 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=38.2
Q ss_pred CCCCcccccccccCCCCCeEEc-CCCCcccHHHHHHHHhcC------CCCCc--cccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIIT-KCEHHFHLACIFEWMERS------DTCPV--CNQE 205 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l-~C~H~Fh~~CI~~Wl~~~------~tCPv--Cr~~ 205 (214)
.++..|+||++.|.. ++++ .|||.|+..||.+|+..+ .+||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456789999999864 4556 599999999999999764 48999 9866
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.96 E-value=5.1e-10 Score=73.85 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=38.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCC--C---cccHHHHHHHHhc--CCCCCcccccccC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCE--H---HFHLACIFEWMER--SDTCPVCNQEMIF 208 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~--H---~Fh~~CI~~Wl~~--~~tCPvCr~~~~~ 208 (214)
++++.|.||+++. ++++ ++||. | .||..||.+|+.. +.+||+|++.+.+
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5667899999984 3334 58864 4 9999999999964 5789999998765
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.92 E-value=2e-10 Score=99.67 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=39.4
Q ss_pred CCCCcccccccccCC-CCCe----EEcCCCCcccHHHHHHHHhcC-----------CCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDA-ENPR----IITKCEHHFHLACIFEWMERS-----------DTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~-~~~~----~~l~C~H~Fh~~CI~~Wl~~~-----------~tCPvCr~~~~ 207 (214)
++...|+||++.+.. +..+ ..++|+|.||..||++||++. ++||+||++|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 455679999999865 2211 135899999999999999763 57999999874
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=4.9e-10 Score=94.16 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=42.2
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-CCCCcccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-~tCPvCr~~~~~~ 209 (214)
.+...|+||++.|.. +++++|||.||..||.+|+..+ .+||+||..+...
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 356689999999965 6788999999999999999875 4599999988544
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=4.2e-10 Score=77.22 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=36.1
Q ss_pred CCcccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCcccccccCC
Q 028048 159 EDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMIFD 209 (214)
Q Consensus 159 ~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCPvCr~~~~~~ 209 (214)
+..|+||++.+.. ++.++|||. ||..|+.. ...||+||+.+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4569999998754 567899999 99999964 47899999988543
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.5e-09 Score=72.21 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=37.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCcccccccC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
++...|.||++.... .++++|||. ||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 455689999998754 778999999 99999984 4789999998743
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.81 E-value=2.5e-09 Score=85.38 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=43.1
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-CCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-~tCPvCr~~~~~~~ 210 (214)
.+...|+||++.|.. +++++|||.|+..||..|+..+ .+||+|+..+....
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 566789999999965 6678999999999999999874 47999999886543
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.79 E-value=1.1e-09 Score=76.16 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=36.4
Q ss_pred CCCcccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
++..|+||++.+.. .+.++|||. ||..|+..| ..||+||+.+.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 34579999998754 778999999 999999988 38999999773
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=3.5e-09 Score=75.62 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=38.7
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC--------CCCCc--cccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--------DTCPV--CNQE 205 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~--------~tCPv--Cr~~ 205 (214)
+..+|+||++.+.......+++|||.||..||..|++.+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999999765545556899999999999999642 37999 9987
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.74 E-value=3.7e-09 Score=88.79 Aligned_cols=51 Identities=29% Similarity=0.621 Sum_probs=41.6
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC--CCCCc--ccccccCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--DTCPV--CNQEMIFD 209 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~--~tCPv--Cr~~~~~~ 209 (214)
..+..|+||++.|. ++++.+.|||.|+..||.+|++.+ .+||+ |++.+...
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 45568999999994 456567999999999999999764 47999 99977543
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.73 E-value=4.3e-09 Score=69.57 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=42.1
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCCC
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 211 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~~ 211 (214)
..|+|+++.+. ++++..++||.|...||.+||+++.+||+.++++..++.
T Consensus 4 ~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 46999999986 444444899999999999999988999999999876653
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.58 E-value=9.4e-09 Score=90.01 Aligned_cols=44 Identities=23% Similarity=0.629 Sum_probs=38.0
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCc-ccHHHHHHHHhcCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
+++..|+||++.+.. ++.++|||. ||..|+..| ..||+||+.+.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 355689999999865 677899999 999999998 68999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.17 E-value=1.2e-06 Score=62.78 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=36.3
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-CCCCCccccccc
Q 028048 161 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMI 207 (214)
Q Consensus 161 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~tCPvCr~~~~ 207 (214)
.|.+|--.+.. -.+++||+|.||.+|+..|.++ .++||.|+..+.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 47788766532 3578999999999999999865 589999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.11 E-value=2.8e-06 Score=70.61 Aligned_cols=52 Identities=21% Similarity=0.607 Sum_probs=42.2
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCC--CCCcccccccCCCC
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD--TCPVCNQEMIFDLP 211 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~--tCPvCr~~~~~~~~ 211 (214)
....|.||.+....+ .....|+|.||..|+.+|++.+. .||.|+.......|
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 456799999988653 56667999999999999997654 89999998765543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.29 E-value=9.3e-05 Score=52.21 Aligned_cols=48 Identities=25% Similarity=0.668 Sum_probs=40.6
Q ss_pred CCCcccccccccCCCCCeEEcCC-CCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 158 EEDVCPTCLEEYDAENPRIITKC-EHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C-~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
....|-.||-.... ++.| .|.+|..|+...|.+++.||+|++++.++-
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 34469999987765 6678 699999999999999999999999887654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.40 E-value=0.0019 Score=45.83 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=27.1
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHH
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEW 192 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~W 192 (214)
++..|.||++.|...-....+.|+|.||..|+..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 34679999987644334455999999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.36 E-value=0.038 Score=36.44 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=35.1
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 206 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCPvCr~~~ 206 (214)
....|.||.+ .++.+..-.|...||..|+...|... =.||.|+...
T Consensus 11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3456999986 35556667799999999999888654 3699997654
No 76
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.81 E-value=0.031 Score=40.37 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=29.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHh
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME 194 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~ 194 (214)
.+++.|.||.+.-+.++-+....|+..||..|+..++.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 56788999998654444466778999999999987764
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.80 E-value=0.076 Score=36.63 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=24.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHH
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEW 192 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~W 192 (214)
..++.|.|| +.|..++....--|+-.||..|+.+-
T Consensus 13 ~~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 356779999 44555443333347999999999996
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.73 E-value=0.097 Score=32.27 Aligned_cols=44 Identities=23% Similarity=0.607 Sum_probs=31.6
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccc
Q 028048 161 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 204 (214)
Q Consensus 161 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCPvCr~ 204 (214)
.|.||...-..++.+..-.|...||..|+.+=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 489998765555556667899999999997544332 24999865
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.70 E-value=0.079 Score=34.19 Aligned_cols=46 Identities=26% Similarity=0.707 Sum_probs=33.6
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQE 205 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----~~tCPvCr~~ 205 (214)
..++.|.||... ++.+..-.|...||..|+..-|.. .=.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999873 444555678899999999986533 2369999764
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.45 E-value=0.038 Score=37.07 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=35.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----~~tCPvCr~~~~ 207 (214)
++...|.||......+.-+..-.|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 344579999887654444555678999999999754432 235999977653
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.90 E-value=0.057 Score=34.88 Aligned_cols=47 Identities=17% Similarity=0.471 Sum_probs=33.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 206 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCPvCr~~~ 206 (214)
..++.|.||... ++.+..-.|...||..|+..-|... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999863 4445556688999999998655432 3599997654
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.62 E-value=0.038 Score=35.00 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=33.0
Q ss_pred cCCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccc
Q 028048 156 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 204 (214)
Q Consensus 156 ~ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCPvCr~ 204 (214)
+..++.|.||... ++.+..-.|...||..|+.+-|... =.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3566789999874 4556667789999999998655432 24888754
No 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=88.37 E-value=0.09 Score=34.41 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=34.0
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 206 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCPvCr~~~ 206 (214)
..++.|.||... ++.+..-.|...||..|+.+-|... =.||.|...-
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 456789999873 4556666789999999998655332 3599996644
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.84 E-value=0.23 Score=31.98 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=34.2
Q ss_pred cCCCCcccccccccCC-CCCeEEcCCCCcccHHHHHHHHh-----cCCCCCccccc
Q 028048 156 IEEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWME-----RSDTCPVCNQE 205 (214)
Q Consensus 156 ~ee~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~-----~~~tCPvCr~~ 205 (214)
+++...|+||...+.. +.-+..-.|...||..|+.--.. ..-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3566789999998853 33334456889999999854321 23569999653
No 85
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=87.31 E-value=0.056 Score=34.66 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=34.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCccccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCPvCr~~~~ 207 (214)
..++.|.||... ++.+..-.|...||..|+.+-|... =.||.|...+.
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 356779999874 4556667799999999998655332 35999876543
No 86
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.59 E-value=0.046 Score=38.38 Aligned_cols=49 Identities=16% Similarity=0.521 Sum_probs=34.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQE 205 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----~~tCPvCr~~ 205 (214)
.+.+.|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 456689999986544445666679999999999744432 2249999653
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.51 E-value=1.2 Score=31.99 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=25.0
Q ss_pred CCCccccccccc------CCCCCeEEcCCCCcccHHHHH
Q 028048 158 EEDVCPTCLEEY------DAENPRIITKCEHHFHLACIF 190 (214)
Q Consensus 158 e~~~C~ICle~~------~~~~~~~~l~C~H~Fh~~CI~ 190 (214)
-...|.+|+..- ..++-+....|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 346799999762 334556677899999999995
No 88
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.45 E-value=0.52 Score=46.04 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCCCCeEEcCCC-CcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCE-HHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
-++..|||-++-+.. +++++-| +.|-...|.+||.+..+||+=|+++....
T Consensus 889 P~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred cHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 355689999998865 6778887 68999999999999999999999886543
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=85.57 E-value=0.93 Score=34.26 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=35.3
Q ss_pred cccCCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHh-----------cCCCCCccccc
Q 028048 154 AVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME-----------RSDTCPVCNQE 205 (214)
Q Consensus 154 ~~~ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~-----------~~~tCPvCr~~ 205 (214)
..+..++.|.||-+. ++.+..-.|-..||..||.+=|. ..=.||+|+..
T Consensus 58 d~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 334567889999984 44455567899999999997653 12359999753
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.42 E-value=0.44 Score=33.10 Aligned_cols=47 Identities=21% Similarity=0.600 Sum_probs=34.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 206 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCPvCr~~~ 206 (214)
+.++.|.||... ++.+..-.|.-.||..|+.+=|... =.||.|+..-
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 566789999974 4556666788999999997766442 3599997644
No 91
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.35 E-value=1.2 Score=30.29 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=28.3
Q ss_pred CCCcccccccccCCCCCeEEcCC-CCcccHHHHHHHHhcC
Q 028048 158 EEDVCPTCLEEYDAENPRIITKC-EHHFHLACIFEWMERS 196 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C-~H~Fh~~CI~~Wl~~~ 196 (214)
....|.+|.|..+..+-+....= .|.||..|-+..+++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 44679999999876553332221 6999999999999763
No 92
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=83.97 E-value=0.35 Score=31.26 Aligned_cols=50 Identities=26% Similarity=0.547 Sum_probs=34.3
Q ss_pred CCCCcccccccccCC--CCCeEEcCCCCcccHHHHHHHHh-------cCCCCCcccccc
Q 028048 157 EEEDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWME-------RSDTCPVCNQEM 206 (214)
Q Consensus 157 ee~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI~~Wl~-------~~~tCPvCr~~~ 206 (214)
.++..|.||...... +..+..-.|.-.||..|+..-|. ..=.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 556789999987532 44445567899999999886442 223588886644
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=82.06 E-value=1.8 Score=30.08 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=35.0
Q ss_pred CCCcccccccccCC---CCC-eEEcCCCCcccHHHHH-HHHhcCCCCCccccccc
Q 028048 158 EEDVCPTCLEEYDA---ENP-RIITKCEHHFHLACIF-EWMERSDTCPVCNQEMI 207 (214)
Q Consensus 158 e~~~C~ICle~~~~---~~~-~~~l~C~H~Fh~~CI~-~Wl~~~~tCPvCr~~~~ 207 (214)
...+|.||=+++.. ++. +..-.|+--.|..|+. ++-+.+..||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34679999998632 221 2234578788999984 55566789999998774
No 94
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.91 E-value=1.2 Score=38.81 Aligned_cols=49 Identities=20% Similarity=0.458 Sum_probs=35.2
Q ss_pred CcccccccccCCCCCeEEcCCCCc--ccHHHHHHHHhcC--CCCCcccccccCCC
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHH--FHLACIFEWMERS--DTCPVCNQEMIFDL 210 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~--Fh~~CI~~Wl~~~--~tCPvCr~~~~~~~ 210 (214)
..|||=+..+ ..+.+...|.|. |-+.=+....++. -.||+|.+.+.+.+
T Consensus 250 L~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 3788877766 457888999998 6666566555443 46999999875543
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=81.71 E-value=1.3 Score=28.70 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=23.3
Q ss_pred CCCCcccccccccCCCCCeE-Ec-CCCCcccHHHH
Q 028048 157 EEEDVCPTCLEEYDAENPRI-IT-KCEHHFHLACI 189 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~-~l-~C~H~Fh~~CI 189 (214)
+....|++|...|..+...+ .- .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 45567999999986544333 34 78899999998
No 96
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.96 E-value=1.4 Score=38.32 Aligned_cols=49 Identities=24% Similarity=0.512 Sum_probs=36.1
Q ss_pred CcccccccccCCCCCeEEcCCCCc--ccHHHHHHHHhcC--CCCCcccccccCCC
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHH--FHLACIFEWMERS--DTCPVCNQEMIFDL 210 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~--Fh~~CI~~Wl~~~--~tCPvCr~~~~~~~ 210 (214)
..|||=+..+ ..+.+...|.|. |-+.=+..+.++. -.||+|.+.+.+++
T Consensus 216 L~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 3699877766 457888999998 7776666665544 46999999886544
No 97
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.76 E-value=0.3 Score=33.01 Aligned_cols=44 Identities=18% Similarity=0.559 Sum_probs=30.4
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-----CCCCCcccc
Q 028048 161 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----SDTCPVCNQ 204 (214)
Q Consensus 161 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----~~tCPvCr~ 204 (214)
.|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68999865444555555678999999999854432 125888864
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.69 E-value=1 Score=30.28 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCCCcccccccccC-CCCCeEEcCCCCcccHHHHHHHHh-----cCCCCCccccc
Q 028048 157 EEEDVCPTCLEEYD-AENPRIITKCEHHFHLACIFEWME-----RSDTCPVCNQE 205 (214)
Q Consensus 157 ee~~~C~ICle~~~-~~~~~~~l~C~H~Fh~~CI~~Wl~-----~~~tCPvCr~~ 205 (214)
.+...| ||...++ .+.-+..-.|...||..|+.--.. ..-.||.|+..
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 344556 9998875 333344556889999999942111 23569999864
No 99
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=80.45 E-value=1.5 Score=28.93 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=32.0
Q ss_pred cCCCCccccccccc--CCCCCeEEcCCCCcccHHHHHHHHh--cCCCCCcccc
Q 028048 156 IEEEDVCPTCLEEY--DAENPRIITKCEHHFHLACIFEWME--RSDTCPVCNQ 204 (214)
Q Consensus 156 ~ee~~~C~ICle~~--~~~~~~~~l~C~H~Fh~~CI~~Wl~--~~~tCPvCr~ 204 (214)
..+++.|.||...- ..+.-+..-.|.-.||..|+..-.. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 35667899998764 3334444557889999999975321 1224877754
No 100
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=80.08 E-value=0.28 Score=32.46 Aligned_cols=44 Identities=23% Similarity=0.595 Sum_probs=28.0
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-----CCCCCcccc
Q 028048 161 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----SDTCPVCNQ 204 (214)
Q Consensus 161 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----~~tCPvCr~ 204 (214)
.|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677754333333444568899999999854432 225888875
No 101
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=79.21 E-value=0.98 Score=31.16 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=33.1
Q ss_pred CCCCccccccccc--CCCCCeEEcCCCCcccHHHHHHHHh--cCCCCCccccccc
Q 028048 157 EEEDVCPTCLEEY--DAENPRIITKCEHHFHLACIFEWME--RSDTCPVCNQEMI 207 (214)
Q Consensus 157 ee~~~C~ICle~~--~~~~~~~~l~C~H~Fh~~CI~~Wl~--~~~tCPvCr~~~~ 207 (214)
++++.|.||.... ..+..+..-.|.-.||..|+..-+. ..=.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 5667899999754 2223344456888999999975331 1235998876543
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.57 E-value=0.6 Score=33.61 Aligned_cols=44 Identities=25% Similarity=0.647 Sum_probs=30.4
Q ss_pred ccccccccc-CCCCCeEEcCCCCcccHHHHHHHHhcC----CCCCcccc
Q 028048 161 VCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 204 (214)
Q Consensus 161 ~C~ICle~~-~~~~~~~~l~C~H~Fh~~CI~~Wl~~~----~tCPvCr~ 204 (214)
.|.||...- ..+..+..-.|...||..|+.+-|..- =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888642 333445556789999999997655432 36999975
No 103
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.69 E-value=0.64 Score=32.73 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=30.8
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc---CCCCCcccc
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER---SDTCPVCNQ 204 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~---~~tCPvCr~ 204 (214)
..| ||-.....+.-+..-.|.-.||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 88877665655556678999999998653222 236999974
No 104
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=77.20 E-value=2.4 Score=25.96 Aligned_cols=43 Identities=16% Similarity=0.364 Sum_probs=27.7
Q ss_pred cccccccccCCCCCe-EEc-CCCCcccHHHHHHH----HhcCCCCCccc
Q 028048 161 VCPTCLEEYDAENPR-IIT-KCEHHFHLACIFEW----MERSDTCPVCN 203 (214)
Q Consensus 161 ~C~ICle~~~~~~~~-~~l-~C~H~Fh~~CI~~W----l~~~~tCPvCr 203 (214)
.|.||...+..+... ..- .|.-.||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 378898888544333 334 58889999998421 13456788885
No 105
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=75.91 E-value=0.69 Score=29.64 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=30.7
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcc
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVC 202 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvC 202 (214)
..|--|+..|.........+|+++||.+|=.---+.=..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999988532223467899999999954433555789988
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=75.86 E-value=2.7 Score=31.18 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=33.4
Q ss_pred cccCCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHH------hc-----CCCCCccccc
Q 028048 154 AVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM------ER-----SDTCPVCNQE 205 (214)
Q Consensus 154 ~~~ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl------~~-----~~tCPvCr~~ 205 (214)
+.+..++.|.||-+. ++.+-.-.|-..||..||.+-+ +. .=.|++|+-.
T Consensus 52 d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 334566789999874 3334445788999999999742 21 1369999653
No 107
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.68 E-value=0.92 Score=31.65 Aligned_cols=45 Identities=29% Similarity=0.557 Sum_probs=28.0
Q ss_pred CCCcccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCCcccccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQEM 206 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCPvCr~~~ 206 (214)
+...| ||..... +.-+..=. |. ..||..||. |.. +-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 9988653 33222233 54 589999996 433 23699997754
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.98 E-value=1.1 Score=29.60 Aligned_cols=46 Identities=28% Similarity=0.551 Sum_probs=28.2
Q ss_pred CCCCcccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCCcccccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQEM 206 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCPvCr~~~ 206 (214)
++...| ||..... +.-+..=. |. ..||..||. |.. +=.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 344567 8988643 33222223 55 689999997 433 23599997654
No 109
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.24 E-value=2.7 Score=27.76 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHH------H---hcCCCCCccccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEW------M---ERSDTCPVCNQE 205 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~W------l---~~~~tCPvCr~~ 205 (214)
....| ||...+..+.-+..-.|...||..|+.-- | ...-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34456 89988764444445578999999999321 1 235679999754
No 110
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=74.07 E-value=2.4 Score=27.71 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=26.9
Q ss_pred cCCCCcccccccccCCCCCeEEcCC-CCcccHHHHHHHH
Q 028048 156 IEEEDVCPTCLEEYDAENPRIITKC-EHHFHLACIFEWM 193 (214)
Q Consensus 156 ~ee~~~C~ICle~~~~~~~~~~l~C-~H~Fh~~CI~~Wl 193 (214)
.++..-|.||.++ ..++.+.| +-.||..|.++--
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHHc
Confidence 3566679999996 23788999 8899999988754
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.57 E-value=2.4 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=24.4
Q ss_pred Cccccccccc-------CCCCCeEEcCCCCcccHHHHHHH
Q 028048 160 DVCPTCLEEY-------DAENPRIITKCEHHFHLACIFEW 192 (214)
Q Consensus 160 ~~C~ICle~~-------~~~~~~~~l~C~H~Fh~~CI~~W 192 (214)
+.|.||+..- +.++-+....|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 5699998753 12345566789999999999754
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=72.64 E-value=0.96 Score=36.83 Aligned_cols=45 Identities=22% Similarity=0.558 Sum_probs=28.2
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhc-----CCCCCcccc
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----SDTCPVCNQ 204 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----~~tCPvCr~ 204 (214)
..|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888875444555666679999999999854432 125999975
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.06 E-value=4 Score=29.89 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=27.3
Q ss_pred ccCCCCcccccccccCCCCC-eEEcCCCCcccHHHHHHH
Q 028048 155 VIEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 192 (214)
Q Consensus 155 ~~ee~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 192 (214)
.+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 33455689999999965332 234579999999996554
No 114
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=68.15 E-value=2.8 Score=29.81 Aligned_cols=47 Identities=19% Similarity=0.453 Sum_probs=31.0
Q ss_pred CcccccccccCCCCC-eEEc-CCCCcccHHHHHHH------H----hcCCCCCcccccc
Q 028048 160 DVCPTCLEEYDAENP-RIIT-KCEHHFHLACIFEW------M----ERSDTCPVCNQEM 206 (214)
Q Consensus 160 ~~C~ICle~~~~~~~-~~~l-~C~H~Fh~~CI~~W------l----~~~~tCPvCr~~~ 206 (214)
..|.||...|..... +..- .|.-.||..|+.-= | ..+-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 469999999854433 3333 68899999998311 1 0234699997643
No 115
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=67.89 E-value=2.3 Score=31.67 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=26.1
Q ss_pred CCCCcccccccccC-C-CCCeEEcCCCCcccHHHHH
Q 028048 157 EEEDVCPTCLEEYD-A-ENPRIITKCEHHFHLACIF 190 (214)
Q Consensus 157 ee~~~C~ICle~~~-~-~~~~~~l~C~H~Fh~~CI~ 190 (214)
..+..|.+|...|. . +.......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56678999999993 2 3456678899999998854
No 116
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.15 E-value=4.4 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCCCcccccccccCCCCC-eEEcCCCCcccHHHHHHHH
Q 028048 157 EEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWM 193 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl 193 (214)
.+...|.+|...|..-.. ...-.||++||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 455679999999965332 3456799999999987654
No 117
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.62 E-value=1.5 Score=30.16 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=33.9
Q ss_pred CCCCcccccccccCC--CCCeEEcCCCCcccHHHHHHHHhc--------CCCCCcccccc
Q 028048 157 EEEDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWMER--------SDTCPVCNQEM 206 (214)
Q Consensus 157 ee~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~--------~~tCPvCr~~~ 206 (214)
++...|.||...-.. +..+..-.|...||..|+.+-|.+ .=.|+.|+...
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 345689999986432 233444578999999999875532 23599886644
No 118
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.65 E-value=3.7 Score=31.24 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=26.0
Q ss_pred CCCccccccccc--CCCCCeEEcCCCCcccHHHH
Q 028048 158 EEDVCPTCLEEY--DAENPRIITKCEHHFHLACI 189 (214)
Q Consensus 158 e~~~C~ICle~~--~~~~~~~~l~C~H~Fh~~CI 189 (214)
.+..|.+|+..| ..+.......|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467899999986 44456778899999999996
No 119
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=62.92 E-value=1.4 Score=31.51 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=20.6
Q ss_pred eEEcCCCCcccHHHHHHHHhcCCCCCcccccccCCC
Q 028048 175 RIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 210 (214)
Q Consensus 175 ~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~~ 210 (214)
.....||+.| ..-+.....||.|+..-...+
T Consensus 68 ~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 68 AQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp CBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCC
T ss_pred cChhhCcCee-----cccCCCCCCCcCCCCCccCCc
Confidence 3467799999 122344578999998765443
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=62.51 E-value=3.5 Score=29.49 Aligned_cols=43 Identities=23% Similarity=0.543 Sum_probs=27.4
Q ss_pred CCCCcccccccccCCCCCeEEc--CCCCcccHHHHHHHHhcC----CCCCcccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMERS----DTCPVCNQ 204 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~~----~tCPvCr~ 204 (214)
++++.|.+|.+ .++.+..- .|-..||..|+. |... =.||.|.-
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 56678999984 23323333 488899999997 5432 23776543
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=62.14 E-value=7.2 Score=26.27 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=27.4
Q ss_pred cCCCCcccccccccCCCCC-eEEcCCCCcccHHHHHHH
Q 028048 156 IEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 192 (214)
Q Consensus 156 ~ee~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 192 (214)
+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3556789999999965432 234569999999997654
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=62.11 E-value=0.87 Score=30.71 Aligned_cols=44 Identities=23% Similarity=0.586 Sum_probs=27.2
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhcC-----CCCCcccc
Q 028048 161 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-----DTCPVCNQ 204 (214)
Q Consensus 161 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-----~tCPvCr~ 204 (214)
.|.||...-..+..+..-.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 456665543333334445688999999998755431 25888875
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=61.65 E-value=3.5 Score=26.85 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=30.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCcccHHHHHHHH---hcCCCCCcccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM---ERSDTCPVCNQ 204 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl---~~~~tCPvCr~ 204 (214)
.+...| ||...+..+.-+..-.|...||..|+.--. ...-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445568 999877643444556689999999985321 12346888864
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.41 E-value=1.1 Score=31.87 Aligned_cols=44 Identities=20% Similarity=0.547 Sum_probs=29.0
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCcccc
Q 028048 161 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQ 204 (214)
Q Consensus 161 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----~~tCPvCr~ 204 (214)
.|.||...-.....+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 57777765443344555678999999999864433 234887754
No 125
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.41 E-value=6.1 Score=26.53 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=27.0
Q ss_pred cCCCCcccccccccCCCCC-eEEcCCCCcccHHHHHHH
Q 028048 156 IEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 192 (214)
Q Consensus 156 ~ee~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 192 (214)
+.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3555689999999965332 234569999999997654
No 126
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.34 E-value=7.6 Score=25.77 Aligned_cols=48 Identities=17% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCcccccccccCCCCCeEEc--CCCCcccHHHHHHHH---------hcCCCCCcccccc
Q 028048 158 EEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWM---------ERSDTCPVCNQEM 206 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl---------~~~~tCPvCr~~~ 206 (214)
+...| ||-.....+.-+..- .|...||..|+.--- ..+-.||.|+...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34567 898875444333444 688999999995211 1245699997643
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=59.09 E-value=6.5 Score=26.89 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=26.8
Q ss_pred cCCCCcccccccccCCCCCe-EEcCCCCcccHHHHHHH
Q 028048 156 IEEEDVCPTCLEEYDAENPR-IITKCEHHFHLACIFEW 192 (214)
Q Consensus 156 ~ee~~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~W 192 (214)
..+...|.+|...|..-... ..-.||++||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 35566899999999654332 34569999999997653
No 128
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.80 E-value=8.3 Score=25.94 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=26.0
Q ss_pred cCCCCcccccccccCCCCC-eEEcCCCCcccHHHHHH
Q 028048 156 IEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFE 191 (214)
Q Consensus 156 ~ee~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~ 191 (214)
+.+...|.+|...|..-.. --.-.||.+||..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3455689999999965332 23456999999999654
No 129
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=56.56 E-value=1.5 Score=27.79 Aligned_cols=43 Identities=28% Similarity=0.542 Sum_probs=26.1
Q ss_pred CCCcccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCCcccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQ 204 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCPvCr~ 204 (214)
+...| ||..... +.-+..=. |. ..||..|+. |.. +=.||.|++
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44456 9988653 33222234 55 699999997 433 235888865
No 130
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=56.44 E-value=1.4 Score=32.21 Aligned_cols=48 Identities=17% Similarity=0.486 Sum_probs=30.4
Q ss_pred CCCCcccccccccCCCCC-eEEcCCCCcccHHHHHHHHhcCCCCCcccc
Q 028048 157 EEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERSDTCPVCNQ 204 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~ 204 (214)
.+...|.+|...|..-.. -..-.||.+||..|....+.....|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 344679999999965322 234679999999998776655666777643
No 131
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=56.24 E-value=7.7 Score=29.73 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=27.3
Q ss_pred cccCCCCcccccccccCCCCCeEEc--CCCCcccHHHHHHHHhc
Q 028048 154 AVIEEEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMER 195 (214)
Q Consensus 154 ~~~ee~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~ 195 (214)
+.+..+..|.||-+. ++.+..- .|...||..||+.++.+
T Consensus 74 DeDG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CTTSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 334456689999873 3323333 58899999999999854
No 132
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=54.21 E-value=8.6 Score=24.51 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=33.7
Q ss_pred CCCCcccccccc-cCCCCCeEEcCCCCcccHHHHHHHHhcCC----CCCcccc
Q 028048 157 EEEDVCPTCLEE-YDAENPRIITKCEHHFHLACIFEWMERSD----TCPVCNQ 204 (214)
Q Consensus 157 ee~~~C~ICle~-~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~----tCPvCr~ 204 (214)
.+..+|.||+-. |..+...+..-|.-.||..|-.+|-.+++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 456789999976 66677777778888888888666653332 2666654
No 133
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.68 E-value=1.7 Score=27.58 Aligned_cols=43 Identities=28% Similarity=0.566 Sum_probs=25.6
Q ss_pred CCCcccccccccCCCCCeEEcC--CC-CcccHHHHHHHHhc----CCCCCcccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQ 204 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~--C~-H~Fh~~CI~~Wl~~----~~tCPvCr~ 204 (214)
+...| ||..... +.-+..-. |. ..||..||. |.. +=.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 9988643 32222223 44 689999997 433 235888864
No 134
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=51.46 E-value=6.7 Score=29.90 Aligned_cols=47 Identities=19% Similarity=0.421 Sum_probs=31.1
Q ss_pred CCCCcccccccccCC-CCCeEEcCCCCcccHHHHHHHH-----hcCCCCCcccc
Q 028048 157 EEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWM-----ERSDTCPVCNQ 204 (214)
Q Consensus 157 ee~~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl-----~~~~tCPvCr~ 204 (214)
++...| ||...++. +.-+..-.|...||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 455678 99987743 3334456789999999994211 12346999975
No 135
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.94 E-value=13 Score=32.49 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=33.2
Q ss_pred cCCCCcccccccccCCCCCeEEc--CCCCcccHHHHHHHHhc----------CCCCCcccc
Q 028048 156 IEEEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMER----------SDTCPVCNQ 204 (214)
Q Consensus 156 ~ee~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~----------~~tCPvCr~ 204 (214)
+..+..|.||-+. ++.+..- .|...||..||+.++-+ .=.|=+|.-
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3455679999874 4445555 79999999999999833 235877754
No 136
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.83 E-value=3.8 Score=23.14 Aligned_cols=14 Identities=29% Similarity=0.890 Sum_probs=9.9
Q ss_pred CCCcccccccccCC
Q 028048 158 EEDVCPTCLEEYDA 171 (214)
Q Consensus 158 e~~~C~ICle~~~~ 171 (214)
+...||||+..+..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 34678888887754
No 137
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=47.22 E-value=15 Score=23.92 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCcccccccccCCCCC-eEEcCCCCcccHHHHHHH
Q 028048 159 EDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 192 (214)
Q Consensus 159 ~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 192 (214)
+..|.+|...|..-.. -..-.||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 3579999999965332 234569999999996543
No 138
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.78 E-value=5.8 Score=25.87 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=30.4
Q ss_pred CCCcccccccccCCCC-CeEEcCCCCcccHHHHHHHH----hcCCCCCccccc
Q 028048 158 EEDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEWM----ERSDTCPVCNQE 205 (214)
Q Consensus 158 e~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~Wl----~~~~tCPvCr~~ 205 (214)
+...| ||...+..+. -+..-.|...||..|+.--- ...-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 44568 7988764443 34455688999999985421 223469998653
No 139
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=46.76 E-value=12 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.816 Sum_probs=16.1
Q ss_pred CCCCCcccccccCCCCCCC
Q 028048 196 SDTCPVCNQEMIFDLPVDY 214 (214)
Q Consensus 196 ~~tCPvCr~~~~~~~~~~~ 214 (214)
+..||.|......-.|..|
T Consensus 18 k~~CP~CG~~T~~~hParf 36 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKF 36 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCC
T ss_pred cccCcCCCCcCCCCCCCCC
Confidence 6779999999988888776
No 140
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=45.59 E-value=5.3 Score=21.52 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=7.8
Q ss_pred CCCCccccccc
Q 028048 197 DTCPVCNQEMI 207 (214)
Q Consensus 197 ~tCPvCr~~~~ 207 (214)
-+||+|+..++
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 36888887664
No 141
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.14 E-value=9.1 Score=26.99 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=10.7
Q ss_pred ccHHHHHHHHhc
Q 028048 184 FHLACIFEWMER 195 (214)
Q Consensus 184 Fh~~CI~~Wl~~ 195 (214)
||..|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999953
No 142
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.83 E-value=9.3 Score=26.90 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 028048 184 FHLACIFEWME 194 (214)
Q Consensus 184 Fh~~CI~~Wl~ 194 (214)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 143
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=43.70 E-value=5.9 Score=20.84 Aligned_cols=10 Identities=60% Similarity=1.235 Sum_probs=6.8
Q ss_pred CCCccccccc
Q 028048 198 TCPVCNQEMI 207 (214)
Q Consensus 198 tCPvCr~~~~ 207 (214)
.||+|.+.|+
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4888877654
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.09 E-value=14 Score=29.59 Aligned_cols=36 Identities=14% Similarity=0.407 Sum_probs=26.7
Q ss_pred CCCcccccccccCCCCC-eEEcCCCCcccHHHHHHHH
Q 028048 158 EEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWM 193 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~Wl 193 (214)
+.+.|.+|...|..-.. -..-.||+.||..|-..++
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 45689999999965432 3456799999999976543
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.75 E-value=12 Score=29.77 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=25.7
Q ss_pred CCCcccccccccCCCCC-eEEcCCCCcccHHHHHHH
Q 028048 158 EEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 192 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~-~~~l~C~H~Fh~~CI~~W 192 (214)
+...|.+|...|..-.. -..-.||+.||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 34689999999965332 234579999999997654
No 146
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.87 E-value=5.4 Score=34.71 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCcccccccccCCCC-CeEEcCCCCcccHHHHHHHHh-------cCCCCCcccccc
Q 028048 157 EEEDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEWME-------RSDTCPVCNQEM 206 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~-~~~~l~C~H~Fh~~CI~~Wl~-------~~~tCPvCr~~~ 206 (214)
.+...|.+|...|..-. ....-.||+.||..|...++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 44567999999986432 123457999999999987652 135677775443
No 147
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=40.62 E-value=1.7 Score=26.46 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=16.5
Q ss_pred EcCCCCcccHHHHHHHHhcCCCCCcccccccCC
Q 028048 177 ITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 209 (214)
Q Consensus 177 ~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~~ 209 (214)
.+.||+.|-..=+... -.-.||+|...+...
T Consensus 6 C~rCg~~fs~~el~~l--P~IrCpyCGyrii~K 36 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVL--PGVRCPYCGYKIIFM 36 (48)
T ss_dssp CCCTTTTCCCCCSCCC--SSSCCTTTCCSCEEC
T ss_pred eeccCCCccHHHHhhC--CCcccCccCcEEEEE
Confidence 4556666643221110 124599998877543
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.07 E-value=9.3 Score=27.26 Aligned_cols=46 Identities=17% Similarity=0.475 Sum_probs=31.1
Q ss_pred cccccccccCCCCCeEEcCCCCcccHHHHHHHHhc----CCCCCcccccc
Q 028048 161 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQEM 206 (214)
Q Consensus 161 ~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~----~~tCPvCr~~~ 206 (214)
.|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 58888775444555556678999999999854432 12488886543
No 149
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=39.07 E-value=2.1 Score=28.80 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=15.9
Q ss_pred CCCCcccHHHHHHHHhcCCCC
Q 028048 179 KCEHHFHLACIFEWMERSDTC 199 (214)
Q Consensus 179 ~C~H~Fh~~CI~~Wl~~~~tC 199 (214)
.|+|.||..|-..|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 7999999999999965 455
No 150
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.46 E-value=5.2 Score=25.39 Aligned_cols=37 Identities=22% Similarity=0.598 Sum_probs=24.3
Q ss_pred CcccccccccCC---CCCeEEcC--CCCcccHHHHHHHHhcC
Q 028048 160 DVCPTCLEEYDA---ENPRIITK--CEHHFHLACIFEWMERS 196 (214)
Q Consensus 160 ~~C~ICle~~~~---~~~~~~l~--C~H~Fh~~CI~~Wl~~~ 196 (214)
..||-|.-.++- -+.+.... |++.|+..|..+|-...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 458877766532 23333344 88999999999886543
No 151
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=35.66 E-value=17 Score=23.21 Aligned_cols=19 Identities=32% Similarity=0.849 Sum_probs=15.6
Q ss_pred CCCCCcccccccCCCCCCC
Q 028048 196 SDTCPVCNQEMIFDLPVDY 214 (214)
Q Consensus 196 ~~tCPvCr~~~~~~~~~~~ 214 (214)
+..||+|......-.|..|
T Consensus 17 k~~CP~CG~~t~~ahParf 35 (60)
T 2aus_D 17 KETCPVCGEKTKVAHPPRF 35 (60)
T ss_dssp SSBCTTTCSBCEESSCCCC
T ss_pred cccCcCCCCccCCCCCCCC
Confidence 5679999998888887766
No 152
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.37 E-value=13 Score=26.10 Aligned_cols=39 Identities=28% Similarity=0.631 Sum_probs=23.3
Q ss_pred CcccccccccCCCCCe-EEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 160 DVCPTCLEEYDAENPR-IITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~-~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
..||+|..++.-.... ....|.-. ++....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHH
Confidence 6799999876322111 13334433 345667999988773
No 153
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.08 E-value=9.4 Score=24.98 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=9.1
Q ss_pred HHHhcCCCCCcccccccC
Q 028048 191 EWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 191 ~Wl~~~~tCPvCr~~~~~ 208 (214)
+||..--.||+|+..+..
T Consensus 3 ~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKL 20 (69)
T ss_dssp CCGGGTCCCTTTCCCCEE
T ss_pred hHHHhheeCCCCCCcCeE
Confidence 344444456666655543
No 154
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.84 E-value=30 Score=22.02 Aligned_cols=39 Identities=18% Similarity=0.458 Sum_probs=25.2
Q ss_pred CCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 159 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 159 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
...|..|-+.+..++.+. --+..||..| -+|-.|++.|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccC
Confidence 456888888776444332 3466778766 34778877764
No 155
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.21 E-value=36 Score=22.12 Aligned_cols=40 Identities=20% Similarity=0.566 Sum_probs=26.3
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
....|..|-+.+..++.+.. =+..||..| -+|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 34579999888754444433 366788766 34778877664
No 156
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.83 E-value=15 Score=22.24 Aligned_cols=41 Identities=17% Similarity=0.424 Sum_probs=25.9
Q ss_pred ccccccCCCCCeEEcCCCCcccHHHHHHHH---hcCCCCCcccc
Q 028048 164 TCLEEYDAENPRIITKCEHHFHLACIFEWM---ERSDTCPVCNQ 204 (214)
Q Consensus 164 ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl---~~~~tCPvCr~ 204 (214)
||...+..+.-+..-.|..-||..|+.--. ...-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 677766543444455688999999985322 12346888864
No 157
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.65 E-value=21 Score=23.79 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCCCcccccccccCC--CCCeEEcCCCCcccHHH
Q 028048 157 EEEDVCPTCLEEYDA--ENPRIITKCEHHFHLAC 188 (214)
Q Consensus 157 ee~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~C 188 (214)
..+..|..|++.|.. ........|.|..|..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 456789999999832 33456677899888777
No 158
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=31.33 E-value=17 Score=23.80 Aligned_cols=13 Identities=23% Similarity=0.984 Sum_probs=9.4
Q ss_pred CCCCcccccccCC
Q 028048 197 DTCPVCNQEMIFD 209 (214)
Q Consensus 197 ~tCPvCr~~~~~~ 209 (214)
..||+|++++.+.
T Consensus 10 ~~CP~Cgkp~~W~ 22 (68)
T 1lv3_A 10 VNCPTCGKTVVWG 22 (68)
T ss_dssp EECTTTCCEEECS
T ss_pred CcCCCCCCccccc
Confidence 4588888887653
No 159
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=31.32 E-value=30 Score=22.48 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=29.0
Q ss_pred CcccccccccCC-CCCeEEcCCCCcccHHHHHHHHh-----cCCCCCccccc
Q 028048 160 DVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWME-----RSDTCPVCNQE 205 (214)
Q Consensus 160 ~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~-----~~~tCPvCr~~ 205 (214)
.+--||...++. +.-+..-.|.-.||..|+.---. ..-.||.|+..
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 334489887753 33344456889999999943211 23469999753
No 160
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.10 E-value=9.1 Score=23.01 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=6.2
Q ss_pred CCCccccc
Q 028048 198 TCPVCNQE 205 (214)
Q Consensus 198 tCPvCr~~ 205 (214)
.||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999763
No 161
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=31.08 E-value=21 Score=22.83 Aligned_cols=44 Identities=7% Similarity=-0.033 Sum_probs=25.9
Q ss_pred CCcccccccccCCCCCeEEcCCCCcccH-HHHHHHHhcCCCCCcccccc
Q 028048 159 EDVCPTCLEEYDAENPRIITKCEHHFHL-ACIFEWMERSDTCPVCNQEM 206 (214)
Q Consensus 159 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~-~CI~~Wl~~~~tCPvCr~~~ 206 (214)
=..|..|...+..+. ....=+..||. .|..+- -...|-.|...+
T Consensus 27 CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 357888877765442 22334567777 477553 345577776543
No 162
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.70 E-value=33 Score=24.21 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=33.2
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
..|..|-..+..........=|..||..|..+-+..+..|-.|.+.|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4688887776421111233456789999998877666689999887753
No 163
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.03 E-value=24 Score=18.90 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=10.7
Q ss_pred CCCCCcccccccCCC
Q 028048 196 SDTCPVCNQEMIFDL 210 (214)
Q Consensus 196 ~~tCPvCr~~~~~~~ 210 (214)
+..||.|.+.+..-+
T Consensus 3 ~~~C~~C~k~Vy~~E 17 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE 17 (31)
T ss_dssp CCBCSSSCSBCCGGG
T ss_pred CCcCCccCCEEecce
Confidence 567999988775443
No 164
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=29.99 E-value=13 Score=23.91 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=26.5
Q ss_pred CCCcccccccccCCCCCeEEc--CCCCcccHHHHHHH---Hh-----cCCCCCcccc
Q 028048 158 EEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEW---ME-----RSDTCPVCNQ 204 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l--~C~H~Fh~~CI~~W---l~-----~~~tCPvCr~ 204 (214)
+...| ||-.....+.-+..- .|...||..|+.-- .+ .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 33456 897655444322222 48889999998310 01 1245999974
No 165
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=29.43 E-value=40 Score=23.80 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=24.2
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
..|..|-..+..........=|..||..|..+-+..+..|..|.+.|.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 456666665532111122233555666666654333335777766554
No 166
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.78 E-value=4.5 Score=27.40 Aligned_cols=18 Identities=22% Similarity=0.761 Sum_probs=14.3
Q ss_pred eEEcCCCCcccHHHHHHH
Q 028048 175 RIITKCEHHFHLACIFEW 192 (214)
Q Consensus 175 ~~~l~C~H~Fh~~CI~~W 192 (214)
+....|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 444569999999998888
No 167
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.46 E-value=30 Score=22.28 Aligned_cols=38 Identities=18% Similarity=0.491 Sum_probs=25.7
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~ 206 (214)
....|..|-+.+.. . .+.--+..||..|. +|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCC
Confidence 44679999988754 2 23334678888774 477887765
No 168
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.44 E-value=16 Score=27.55 Aligned_cols=26 Identities=19% Similarity=0.576 Sum_probs=18.4
Q ss_pred eEEcCCCCcccHHHHHHHHhcCCCCCcccccc
Q 028048 175 RIITKCEHHFHLACIFEWMERSDTCPVCNQEM 206 (214)
Q Consensus 175 ~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~ 206 (214)
.....|||.|-.. .....||.|..++
T Consensus 133 y~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 133 YVCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp EEESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred EECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 5678899998542 2234799998775
No 169
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.30 E-value=34 Score=22.34 Aligned_cols=40 Identities=25% Similarity=0.566 Sum_probs=25.3
Q ss_pred CCCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 158 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 158 e~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
....|..|-..+...+.+. -=+..||..|. +|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcC
Confidence 4467999988874433332 34677887773 4777776653
No 170
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.93 E-value=28 Score=26.61 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=15.8
Q ss_pred eEEcCCCCcccHHHHHHHHhcCCCCCccccc
Q 028048 175 RIITKCEHHFHLACIFEWMERSDTCPVCNQE 205 (214)
Q Consensus 175 ~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~ 205 (214)
-++..|||++-. .--..||+|..+
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 456778887641 233589999753
No 171
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.58 E-value=54 Score=20.99 Aligned_cols=39 Identities=23% Similarity=0.517 Sum_probs=24.1
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
..|..|-+.+..++..+ ..=+..||..|. +|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CcCccCCcccccCceEE-EECccccccccC--------chhhCCCccC
Confidence 46888888775434332 233667777663 4777777664
No 172
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.38 E-value=8.8 Score=25.00 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=5.0
Q ss_pred CCCCCcccccc
Q 028048 196 SDTCPVCNQEM 206 (214)
Q Consensus 196 ~~tCPvCr~~~ 206 (214)
--.||+|+.++
T Consensus 10 iL~CP~ck~~L 20 (67)
T 2jny_A 10 VLACPKDKGPL 20 (67)
T ss_dssp CCBCTTTCCBC
T ss_pred HhCCCCCCCcC
Confidence 33455554444
No 173
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=25.88 E-value=18 Score=24.84 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=25.6
Q ss_pred CCCCcccccccccCCCCCeEEcCCC---CcccHHHHHHHHhc----CCCCCc-ccc
Q 028048 157 EEEDVCPTCLEEYDAENPRIITKCE---HHFHLACIFEWMER----SDTCPV-CNQ 204 (214)
Q Consensus 157 ee~~~C~ICle~~~~~~~~~~l~C~---H~Fh~~CI~~Wl~~----~~tCPv-Cr~ 204 (214)
++...| ||..... ++-+..=.|. -.||..||. |.. .=.||. |++
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344567 9987543 3322223333 689999985 322 235998 864
No 174
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.37 E-value=59 Score=20.15 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=22.8
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
..|..|-..+...+. ++.--+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCC
Confidence 467888777653222 23334667777663 4667766654
No 175
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.13 E-value=30 Score=21.72 Aligned_cols=40 Identities=20% Similarity=0.553 Sum_probs=24.4
Q ss_pred CCcccccccccCC--CCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 159 EDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 159 ~~~C~ICle~~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
...|..|-+.+.. +... +.--+..||..|. +|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 3568888887753 2222 2235677887663 4777877664
No 176
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.48 E-value=27 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=17.1
Q ss_pred eEEcCCCCcccHHHHHHHHhcCC-CCCccccc
Q 028048 175 RIITKCEHHFHLACIFEWMERSD-TCPVCNQE 205 (214)
Q Consensus 175 ~~~l~C~H~Fh~~CI~~Wl~~~~-tCPvCr~~ 205 (214)
.....|||.|-.. .... .||.|...
T Consensus 74 ~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred EEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 4556788888751 3356 79999765
No 177
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.43 E-value=35 Score=21.13 Aligned_cols=41 Identities=17% Similarity=0.488 Sum_probs=27.0
Q ss_pred CCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCcccccccC
Q 028048 159 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 208 (214)
Q Consensus 159 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~~ 208 (214)
...|..|-..+...+.+ +..=+..||..|. .|-.|++.|..
T Consensus 11 ~~~C~~C~~~i~~~e~~-~~~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEE-EEETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceE-EEeCcCeeCcCCC--------cccCCCCCCCC
Confidence 45799999887654433 2234667887774 57788877643
No 178
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.49 E-value=44 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=17.0
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHh
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME 194 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~ 194 (214)
..|..|-..+..+.. ....=+..||..|..+.+.
T Consensus 37 F~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGDR-YLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCCc-EEeeCCEEEcHHHhHHHhc
Confidence 356666555533322 2233355666666666553
No 179
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.91 E-value=47 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=19.0
Q ss_pred CCcccccccccCCCCCeEEcCCCCccc
Q 028048 159 EDVCPTCLEEYDAENPRIITKCEHHFH 185 (214)
Q Consensus 159 ~~~C~ICle~~~~~~~~~~l~C~H~Fh 185 (214)
...|..|... ++.-+.|.|||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETTTCCEEE
T ss_pred CCcCccccCC---CCeeeeeecCcccc
Confidence 4569999874 55578999999987
No 180
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.91 E-value=26 Score=27.22 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=13.5
Q ss_pred EEcCCCCcccHHHHHHHHhcCCCCCccccc
Q 028048 176 IITKCEHHFHLACIFEWMERSDTCPVCNQE 205 (214)
Q Consensus 176 ~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~ 205 (214)
++..|||++-.. ..-..||+|..+
T Consensus 157 ~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 157 RCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EECCCCCEeeCC------CCCCCCCCCcCC
Confidence 345566664311 123479999774
No 181
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.37 E-value=46 Score=21.97 Aligned_cols=38 Identities=16% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 159 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 159 ~~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
...|..|-+.+. +. .+.--+..||..|. +|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEec-ce--EEEECCccccccCC--------ccCCCCCCCC
Confidence 356777777663 22 22234666776552 4667766654
No 182
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.00 E-value=7.3 Score=24.40 Aligned_cols=8 Identities=38% Similarity=1.323 Sum_probs=3.6
Q ss_pred CCCccccc
Q 028048 198 TCPVCNQE 205 (214)
Q Consensus 198 tCPvCr~~ 205 (214)
.||+|+..
T Consensus 12 ~CP~c~~~ 19 (56)
T 2kpi_A 12 ACPACHAP 19 (56)
T ss_dssp CCSSSCSC
T ss_pred eCCCCCCc
Confidence 34444444
No 183
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.82 E-value=31 Score=21.49 Aligned_cols=37 Identities=19% Similarity=0.482 Sum_probs=20.1
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
..|..|-+.+.. ..+ .--+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBCS
T ss_pred CcCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcCC
Confidence 457777766642 222 223556666653 4666666553
No 184
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.61 E-value=67 Score=19.87 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=21.3
Q ss_pred CcccccccccCCCCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 160 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 160 ~~C~ICle~~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
..|..|-+.+...+.. +.-=+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccC
Confidence 4577777766543222 2223556776552 3666766553
No 185
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.57 E-value=67 Score=20.28 Aligned_cols=40 Identities=18% Similarity=0.579 Sum_probs=24.7
Q ss_pred CcccccccccCC-CCCeEEcCCCCcccHHHHHHHHhcCCCCCccccccc
Q 028048 160 DVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 207 (214)
Q Consensus 160 ~~C~ICle~~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~~~tCPvCr~~~~ 207 (214)
..|..|-+.+.. +....+.--+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 568888887753 111223334677888773 4777877664
Done!