Query 028049
Match_columns 214
No_of_seqs 144 out of 1759
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.3 3.4E-12 7.4E-17 124.3 9.6 63 103-169 779-842 (1153)
2 PLN03210 Resistant to P. syrin 99.3 3.3E-12 7E-17 124.5 8.4 43 128-170 777-820 (1153)
3 KOG4658 Apoptotic ATPase [Sign 99.2 1.4E-11 3E-16 116.2 2.7 152 8-173 637-791 (889)
4 PLN00113 leucine-rich repeat r 98.8 1.2E-08 2.6E-13 98.1 6.4 22 3-25 155-176 (968)
5 PLN00113 leucine-rich repeat r 98.7 3.8E-08 8.1E-13 94.7 6.6 16 10-25 137-152 (968)
6 KOG0444 Cytoskeletal regulator 98.6 3.3E-09 7.2E-14 95.1 -1.9 152 1-159 138-298 (1255)
7 KOG0618 Serine/threonine phosp 98.1 1E-06 2.2E-11 82.0 1.0 159 2-168 254-467 (1081)
8 KOG0617 Ras suppressor protein 98.1 2.6E-07 5.6E-12 71.0 -2.5 136 2-162 46-183 (264)
9 PRK15370 E3 ubiquitin-protein 98.0 1.8E-05 3.8E-10 74.3 8.0 73 79-162 284-356 (754)
10 PF14580 LRR_9: Leucine-rich r 98.0 1.4E-06 3E-11 67.6 0.5 130 9-162 15-150 (175)
11 KOG4194 Membrane glycoprotein 98.0 7.9E-07 1.7E-11 79.4 -1.0 125 79-210 270-410 (873)
12 KOG4194 Membrane glycoprotein 97.9 3.7E-06 8E-11 75.3 0.6 64 98-162 361-426 (873)
13 KOG4658 Apoptotic ATPase [Sign 97.8 5.2E-06 1.1E-10 79.0 0.6 76 133-208 698-787 (889)
14 PF13855 LRR_8: Leucine rich r 97.7 5.7E-05 1.2E-09 47.9 4.2 58 129-202 1-60 (61)
15 PRK15387 E3 ubiquitin-protein 97.6 0.00017 3.6E-09 67.9 7.4 22 2-26 214-235 (788)
16 PRK15387 E3 ubiquitin-protein 97.6 9.3E-05 2E-09 69.6 5.6 108 78-202 342-456 (788)
17 cd00116 LRR_RI Leucine-rich re 97.6 3.9E-05 8.4E-10 64.3 2.9 13 190-202 249-261 (319)
18 PRK15370 E3 ubiquitin-protein 97.6 9.9E-05 2.1E-09 69.3 5.8 31 130-162 305-335 (754)
19 PRK15386 type III secretion pr 97.6 0.00017 3.6E-09 63.0 6.5 63 47-117 47-110 (426)
20 cd00116 LRR_RI Leucine-rich re 97.6 1.9E-05 4.1E-10 66.1 0.5 17 9-25 77-93 (319)
21 PF13855 LRR_8: Leucine rich r 97.5 0.00015 3.2E-09 46.0 3.8 37 80-117 3-40 (61)
22 KOG0472 Leucine-rich repeat pr 97.5 6.2E-06 1.4E-10 70.9 -3.4 150 2-161 127-284 (565)
23 KOG0444 Cytoskeletal regulator 97.5 2.1E-05 4.6E-10 71.2 -0.2 142 3-168 94-260 (1255)
24 KOG0617 Ras suppressor protein 97.5 3.6E-06 7.8E-11 64.8 -4.7 133 10-165 30-163 (264)
25 KOG3207 Beta-tubulin folding c 97.4 0.00013 2.8E-09 63.4 2.8 164 8-200 141-310 (505)
26 KOG2120 SCF ubiquitin ligase, 97.3 3E-05 6.6E-10 64.4 -1.3 62 126-201 310-373 (419)
27 PF14580 LRR_9: Leucine-rich r 97.3 7.9E-05 1.7E-09 57.8 0.7 110 9-139 37-150 (175)
28 KOG0472 Leucine-rich repeat pr 97.3 0.00011 2.4E-09 63.4 1.4 112 4-139 426-538 (565)
29 KOG2120 SCF ubiquitin ligase, 97.0 4.9E-05 1.1E-09 63.2 -2.8 105 78-202 234-349 (419)
30 KOG0618 Serine/threonine phosp 96.9 0.00024 5.1E-09 66.8 -0.0 130 11-164 357-488 (1081)
31 KOG1259 Nischarin, modulator o 96.7 0.00018 3.8E-09 60.1 -1.9 110 72-202 301-410 (490)
32 KOG3665 ZYG-1-like serine/thre 96.7 0.0014 3.1E-08 61.2 3.4 80 78-161 173-259 (699)
33 PRK15386 type III secretion pr 96.7 0.0022 4.8E-08 56.1 4.3 64 99-170 49-112 (426)
34 KOG4237 Extracellular matrix p 96.4 0.0007 1.5E-08 58.3 -0.7 25 1-25 79-103 (498)
35 KOG3207 Beta-tubulin folding c 96.3 0.0014 2.9E-08 57.2 0.7 18 8-25 167-184 (505)
36 PF12799 LRR_4: Leucine Rich r 96.0 0.0093 2E-07 35.3 3.0 32 130-162 2-34 (44)
37 KOG3665 ZYG-1-like serine/thre 95.7 0.0056 1.2E-07 57.3 2.1 113 45-165 166-288 (699)
38 KOG1259 Nischarin, modulator o 95.6 0.0022 4.7E-08 53.8 -0.9 14 12-25 283-296 (490)
39 KOG0532 Leucine-rich repeat (L 95.6 0.004 8.6E-08 56.1 0.5 133 1-161 110-243 (722)
40 KOG3864 Uncharacterized conser 95.2 0.011 2.4E-07 46.7 1.9 63 44-111 117-185 (221)
41 COG4886 Leucine-rich repeat (L 95.2 0.034 7.5E-07 48.2 5.1 61 47-111 158-218 (394)
42 PLN03150 hypothetical protein; 95.1 0.043 9.4E-07 50.9 5.7 79 80-163 420-501 (623)
43 PF12799 LRR_4: Leucine Rich r 95.0 0.028 6E-07 33.2 2.8 40 13-68 1-40 (44)
44 COG4886 Leucine-rich repeat (L 94.9 0.025 5.4E-07 49.1 3.4 103 50-161 184-286 (394)
45 KOG3864 Uncharacterized conser 94.3 0.0055 1.2E-07 48.3 -1.9 66 98-165 121-189 (221)
46 KOG2123 Uncharacterized conser 94.0 0.0068 1.5E-07 50.3 -1.9 80 10-111 16-97 (388)
47 KOG0532 Leucine-rich repeat (L 93.9 0.0044 9.6E-08 55.9 -3.6 83 80-170 145-228 (722)
48 PF13504 LRR_7: Leucine rich r 93.3 0.049 1.1E-06 25.3 1.1 16 130-146 2-17 (17)
49 KOG4341 F-box protein containi 93.1 0.016 3.4E-07 50.5 -1.3 38 126-163 317-357 (483)
50 KOG2982 Uncharacterized conser 91.3 0.17 3.7E-06 42.6 2.7 89 10-115 68-159 (418)
51 KOG1947 Leucine rich repeat pr 89.5 0.11 2.4E-06 45.7 0.2 86 78-165 214-308 (482)
52 KOG4341 F-box protein containi 89.5 0.24 5.2E-06 43.4 2.1 140 10-165 291-439 (483)
53 KOG1859 Leucine-rich repeat pr 89.4 0.027 5.8E-07 52.5 -3.9 81 9-111 183-263 (1096)
54 PLN03150 hypothetical protein; 89.2 0.49 1.1E-05 44.0 4.1 60 126-201 439-500 (623)
55 KOG1644 U2-associated snRNP A' 88.5 0.52 1.1E-05 37.5 3.2 102 53-162 43-150 (233)
56 KOG2739 Leucine-rich acidic nu 87.8 0.33 7.1E-06 39.8 1.8 88 79-169 66-160 (260)
57 PF00560 LRR_1: Leucine Rich R 85.7 0.56 1.2E-05 23.0 1.4 15 153-168 1-15 (22)
58 KOG2739 Leucine-rich acidic nu 84.7 0.4 8.8E-06 39.3 0.8 84 79-166 44-130 (260)
59 KOG1947 Leucine rich repeat pr 84.6 0.56 1.2E-05 41.2 1.8 139 10-163 185-332 (482)
60 KOG1644 U2-associated snRNP A' 84.0 0.86 1.9E-05 36.3 2.4 76 80-161 44-122 (233)
61 KOG2123 Uncharacterized conser 83.5 0.1 2.2E-06 43.6 -3.1 83 8-108 36-123 (388)
62 smart00367 LRR_CC Leucine-rich 83.1 0.79 1.7E-05 23.4 1.3 15 191-205 2-16 (26)
63 KOG1909 Ran GTPase-activating 83.0 0.38 8.3E-06 41.2 0.0 66 96-162 207-280 (382)
64 KOG0531 Protein phosphatase 1, 81.7 0.75 1.6E-05 40.4 1.4 17 9-25 91-107 (414)
65 KOG0531 Protein phosphatase 1, 79.4 1 2.2E-05 39.6 1.5 36 79-116 119-154 (414)
66 KOG1859 Leucine-rich repeat pr 76.0 0.32 6.8E-06 45.7 -2.7 68 88-161 173-241 (1096)
67 KOG4237 Extracellular matrix p 73.9 1.8 3.8E-05 38.0 1.4 32 127-159 320-353 (498)
68 smart00370 LRR Leucine-rich re 71.3 3.3 7.1E-05 20.9 1.6 16 12-27 1-16 (26)
69 smart00369 LRR_TYP Leucine-ric 71.3 3.3 7.1E-05 20.9 1.6 16 12-27 1-16 (26)
70 PF13516 LRR_6: Leucine Rich r 68.2 3.3 7.1E-05 20.5 1.1 14 12-25 1-14 (24)
71 KOG2982 Uncharacterized conser 65.4 2.2 4.7E-05 36.2 0.1 76 78-161 71-155 (418)
72 PF13306 LRR_5: Leucine rich r 54.8 49 0.0011 23.1 5.8 74 79-160 13-89 (129)
73 smart00365 LRR_SD22 Leucine-ri 51.1 12 0.00026 19.3 1.4 14 12-25 1-14 (26)
74 KOG4579 Leucine-rich repeat (L 42.7 2.9 6.2E-05 31.6 -2.4 63 79-147 54-117 (177)
75 smart00368 LRR_RI Leucine rich 42.6 18 0.00039 18.7 1.3 13 13-25 2-14 (28)
76 smart00446 LRRcap occurring C- 37.5 14 0.0003 19.1 0.4 17 7-23 7-23 (26)
77 KOG1909 Ran GTPase-activating 31.7 34 0.00073 29.7 2.0 143 9-163 153-309 (382)
78 smart00364 LRR_BAC Leucine-ric 25.0 48 0.001 17.1 1.1 17 13-29 2-18 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=3.4e-12 Score=124.32 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=38.1
Q ss_pred ccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCccccccc
Q 028049 103 HLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEII 169 (214)
Q Consensus 103 ~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~ 169 (214)
+|+.|++.+ +.+..++... ..+++|+.|.|.+|++++.+|....+++|++|++++|.++..++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si----~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSI----QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cchheeCCCCCCccccChhh----hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 455555555 4444443222 24667777777777777777654466777777777776665543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.33 E-value=3.3e-12 Score=124.49 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=32.8
Q ss_pred CCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccccc
Q 028049 128 MPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEIIS 170 (214)
Q Consensus 128 ~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i~~ 170 (214)
+++|+.|.+++|+.+..+|. +..+++|+.|++.+|.+++.++.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 35778888888888887774 66788888888888887776653
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=1.4e-11 Score=116.25 Aligned_cols=152 Identities=28% Similarity=0.553 Sum_probs=110.7
Q ss_pred hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecC
Q 028049 8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIED 87 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~ 87 (214)
+++.|++||+|++..+.. ..+...+++++.|++|+.+.+++.+..-++.+..+.++.++.+.+.+.+
T Consensus 637 i~~~L~~Lr~L~l~~s~~-------------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSAL-------------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred hhhhcccccEEEeecccc-------------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 344566666666665542 2245568899999999999998766544566777777778888888755
Q ss_pred CCCCCchhhhcccccccchhhccccccceeeccccccc--CC-CCCccEEeeecCcCCccCcccCCCCCccEEeEecCcc
Q 028049 88 CNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEV--QK-MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDD 164 (214)
Q Consensus 88 c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~--~~-~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~ 164 (214)
|.. ....+++..+.+|+.|.|.+.+..++...+.+.. .. |+++.++.+.+|+.++.+.|..++|+|+.|.+.+|..
T Consensus 704 ~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 704 CSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred ccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 433 3333577888999999999833333333332221 22 8899999999999999999988999999999999999
Q ss_pred ccccccccc
Q 028049 165 MEEIISVEN 173 (214)
Q Consensus 165 l~~i~~~~~ 173 (214)
++++++...
T Consensus 783 ~e~~i~~~k 791 (889)
T KOG4658|consen 783 LEDIIPKLK 791 (889)
T ss_pred cccCCCHHH
Confidence 999987543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.76 E-value=1.2e-08 Score=98.15 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=17.2
Q ss_pred CCChhhhccCcccceEEccccCc
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
.+|.. ++++++|++|++.+|..
T Consensus 155 ~~p~~-~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 155 EIPND-IGSFSSLKVLDLGGNVL 176 (968)
T ss_pred cCChH-HhcCCCCCEEECccCcc
Confidence 45654 88888888888888875
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.66 E-value=3.8e-08 Score=94.71 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=13.8
Q ss_pred ccCcccceEEccccCc
Q 028049 10 SSFSKLQVLRMLHCGY 25 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~ 25 (214)
+.+++|++|++.+|..
T Consensus 137 ~~l~~L~~L~Ls~n~~ 152 (968)
T PLN00113 137 GSIPNLETLDLSNNML 152 (968)
T ss_pred cccCCCCEEECcCCcc
Confidence 4689999999999976
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.62 E-value=3.3e-09 Score=95.06 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=84.6
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccc------cchh--hHhhhhhccCCccCceeeEEecccchhhhccC
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKV------LSAD--AESLMKEIHCLEQLNLITLSLHGSRGVENFLK 72 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~------~~~~--~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~ 72 (214)
|++||..+.-+|+-|-.||+++++...+|-.+.-.+ +++. ...-+..|.++..|++|.++... ..+..++.
T Consensus 138 IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Pt 216 (1255)
T KOG0444|consen 138 IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPT 216 (1255)
T ss_pred cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCC
Confidence 466777666777777777777776644443322110 1111 22345666677777777765321 22333333
Q ss_pred CcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCC
Q 028049 73 FPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFA 151 (214)
Q Consensus 73 ~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l 151 (214)
+-.-..+++.++++ |+++..+|..+-++++|++|++++++++++....+ .-.+|++|+++. +.|..+|. ++.+
T Consensus 217 sld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~----~W~~lEtLNlSr-NQLt~LP~avcKL 290 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG----EWENLETLNLSR-NQLTVLPDAVCKL 290 (1255)
T ss_pred chhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeeeccHH----HHhhhhhhcccc-chhccchHHHhhh
Confidence 22234577777774 46776666666677899999999988877753211 123455555554 35555553 4444
Q ss_pred CCccEEeE
Q 028049 152 PNLKCLRI 159 (214)
Q Consensus 152 ~~L~~L~i 159 (214)
++|+.|.+
T Consensus 291 ~kL~kLy~ 298 (1255)
T KOG0444|consen 291 TKLTKLYA 298 (1255)
T ss_pred HHHHHHHh
Confidence 44444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.08 E-value=1e-06 Score=82.03 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=86.9
Q ss_pred CCCChhhhccCcccceEEccccCccccccccccc-c-----cchhhHh-hhhhccCCccCceeeEEecccchhhhccCCc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGK-V-----LSADAES-LMKEIHCLEQLNLITLSLHGSRGVENFLKFP 74 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~-~-----~~~~~~~-~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~ 74 (214)
..+| +||+.+.||+.++..+++.+..|..+... . ....... ....++++++|+.|++.-.....++..+...
T Consensus 254 ~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 254 SNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred hcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence 4678 68999999999999998875555443211 1 1111111 2333555677777777655544333211000
Q ss_pred -------------c----------------------------------hhccccEEeecCCCCCCchh-hhcccccccch
Q 028049 75 -------------K----------------------------------LQTITQALHIEDCNSLPLNL-LHLANMEHLEK 106 (214)
Q Consensus 75 -------------~----------------------------------l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~ 106 (214)
+ -..||+.|++++ +.+.+++ +.+.++..|+.
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHH
Confidence 0 012456666655 4455555 45666667777
Q ss_pred hhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccc
Q 028049 107 LFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEI 168 (214)
Q Consensus 107 L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i 168 (214)
|+++|++++.++... ...++|++|.-.+ +.+..+|.+..++.|+.+++ +|+++.++
T Consensus 412 L~LSGNkL~~Lp~tv----a~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl-S~N~L~~~ 467 (1081)
T KOG0618|consen 412 LNLSGNKLTTLPDTV----ANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDL-SCNNLSEV 467 (1081)
T ss_pred HhcccchhhhhhHHH----HhhhhhHHHhhcC-CceeechhhhhcCcceEEec-ccchhhhh
Confidence 777776666665322 1234444444322 34445555555666666666 45666554
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.07 E-value=2.6e-07 Score=71.01 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=86.9
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..+|++ |-.|.||++|.++++....+| ..+.+++.|++|.+.+.....+++=+.+ .+.++
T Consensus 46 ~~vppn-ia~l~nlevln~~nnqie~lp----------------~~issl~klr~lnvgmnrl~~lprgfgs---~p~le 105 (264)
T KOG0617|consen 46 TVVPPN-IAELKNLEVLNLSNNQIEELP----------------TSISSLPKLRILNVGMNRLNILPRGFGS---FPALE 105 (264)
T ss_pred eecCCc-HHHhhhhhhhhcccchhhhcC----------------hhhhhchhhhheecchhhhhcCccccCC---Cchhh
Confidence 457877 889999999999998874332 2345566677777666555444432221 13455
Q ss_pred EEeecCCC-CCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeE
Q 028049 82 ALHIEDCN-SLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRI 159 (214)
Q Consensus 82 ~L~l~~c~-~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i 159 (214)
.|++..-+ +-.++|..+-.|+.|+-|++.++.++.++.+.+ .+.+|+.|.+++ +.+-.+|. ++.+..|++|+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg----~lt~lqil~lrd-ndll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG----KLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh----hhcceeEEeecc-CchhhCcHHHHHHHHHHHHhc
Confidence 56654321 113343333456788888888888887765543 578888888877 36666774 667778888888
Q ss_pred ecC
Q 028049 160 LDC 162 (214)
Q Consensus 160 ~~C 162 (214)
.+-
T Consensus 181 qgn 183 (264)
T KOG0617|consen 181 QGN 183 (264)
T ss_pred ccc
Confidence 763
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.02 E-value=1.8e-05 Score=74.28 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=34.2
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR 158 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~ 158 (214)
.|+.|+++++ .++.++..++ .+|+.|++.++.+..++. ..+++|+.|.+.+| +++.+|. ..+++|+.|+
T Consensus 284 sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~------~l~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~ 352 (754)
T PRK15370 284 ELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTALPE------TLPPGLKTLEAGEN-ALTSLPA-SLPPELQVLD 352 (754)
T ss_pred CCcEEECCCC-ccccCcccch--hhHHHHHhcCCccccCCc------cccccceeccccCC-ccccCCh-hhcCcccEEE
Confidence 4555555543 3333321111 245555555544443321 12345666666665 4555553 1135666666
Q ss_pred EecC
Q 028049 159 ILDC 162 (214)
Q Consensus 159 i~~C 162 (214)
++++
T Consensus 353 Ls~N 356 (754)
T PRK15370 353 VSKN 356 (754)
T ss_pred CCCC
Confidence 6665
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.02 E-value=1.4e-06 Score=67.63 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=37.6
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhcc-CCccCceeeEEecccchhhhccCCcchhccccEEeecC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIH-CLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIED 87 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~-~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~ 87 (214)
+.+..++++|++.++... .++.+. .+.+|+.|+++-..+..++.+.. ..+++.|++++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-----------------~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~----L~~L~~L~L~~ 73 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-----------------TIENLGATLDKLEVLDLSNNQITKLEGLPG----LPRLKTLDLSN 73 (175)
T ss_dssp --------------------------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--S
T ss_pred cccccccccccccccccc-----------------cccchhhhhcCCCEEECCCCCCccccCccC----hhhhhhcccCC
Confidence 456667889999998871 244555 46788888877665555554433 24577777765
Q ss_pred CCCCCchhhhc-ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC---c-ccCCCCCccEEeEecC
Q 028049 88 CNSLPLNLLHL-ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL---T-WLVFAPNLKCLRILDC 162 (214)
Q Consensus 88 c~~l~~l~~~l-~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l---p-~~~~l~~L~~L~i~~C 162 (214)
+.+.++...+ ..+++|++|++.++.+..+.. . .....+++|+.|.+.+.|=-+.- . .+..+|+|+.|+-...
T Consensus 74 -N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~-l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 74 -NRISSISEGLDKNLPNLQELYLSNNKISDLNE-L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -S---S-CHHHHHH-TT--EEE-TTS---SCCC-C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -CCCCccccchHHhCCcCCEEECcCCcCCChHH-h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 4555543222 346778888877755544321 0 11135777777777765432211 1 1334666666655443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.01 E-value=7.9e-07 Score=79.41 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=69.7
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK 155 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~ 155 (214)
.+++|+|.. +++.++. ..+=++++|++|+++.+.++.+.++.. .+.++|+.|+++. +++.+++. +..+..|+
T Consensus 270 kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W---sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 270 KMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW---SFTQKLKELDLSS-NRITRLDEGSFRVLSQLE 344 (873)
T ss_pred ccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchh---hhcccceeEeccc-cccccCChhHHHHHHHhh
Confidence 345555533 3344433 345567888999998888877766433 2578899999876 57777764 33455666
Q ss_pred EEeEecC-------------cccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccCCC
Q 028049 156 CLRILDC-------------DDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHR 210 (214)
Q Consensus 156 ~L~i~~C-------------~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~~~ 210 (214)
+|.+++- .+++.+.-.....+. .+++....+..+++|+.|.+.+ .+||+++.+
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr 410 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR 410 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecC-ceeeecchh
Confidence 6665541 111111100000000 0001112455689999999887 457777765
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.87 E-value=3.7e-06 Score=75.27 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=40.4
Q ss_pred cccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEecC
Q 028049 98 LANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDC 162 (214)
Q Consensus 98 l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C 162 (214)
+..+.+|++|++.++.+.-...|..+.-..+++|++|.+.| +++|.+|- ...+++||+|++.+-
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 44456666666666444322222111112388899999988 58888874 556888888888663
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.81 E-value=5.2e-06 Score=79.00 Aligned_cols=76 Identities=30% Similarity=0.269 Sum_probs=43.0
Q ss_pred EEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccch-h---hHHH-------hhhcc---cCCCCCccCeeec
Q 028049 133 SVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFE-K---LIEV-------SEMMG---ELNLFSGLESLSL 198 (214)
Q Consensus 133 ~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~-~---l~~~-------~~~~~---~~~~f~~L~~L~l 198 (214)
.+.+.+|..-...+.+..+.+|+.|.|.+|...+..+...... . ...+ ...+. .....|+|+.|.+
T Consensus 698 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l 777 (889)
T KOG4658|consen 698 SLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSL 777 (889)
T ss_pred hhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEE
Confidence 3333343333333446778999999999998876554221111 0 1000 01111 2245688999999
Q ss_pred CccccccccC
Q 028049 199 GNASNLKAYV 208 (214)
Q Consensus 199 ~~cp~L~~i~ 208 (214)
..|+.++.+-
T Consensus 778 ~~~~~~e~~i 787 (889)
T KOG4658|consen 778 VSCRLLEDII 787 (889)
T ss_pred ecccccccCC
Confidence 9998877654
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.72 E-value=5.7e-05 Score=47.95 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=38.0
Q ss_pred CCccEEeeecCcCCccCcc--cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 129 PKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 129 ~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
|+|++|.+++| +++.+|. +..+++|++|+++ .+.++.+.. ..+..+++|++|++++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~--------------~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLS-NNNLTSIPP--------------DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEET-SSSESEEET--------------TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEcc-CCccCccCH--------------HHHcCCCCCCEEeCcCCc
Confidence 46777777776 7777763 4557777777777 445554432 245667777777777653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.62 E-value=0.00017 Score=67.90 Aligned_cols=22 Identities=9% Similarity=0.302 Sum_probs=12.0
Q ss_pred CCCChhhhccCcccceEEccccCcc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYA 26 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~ 26 (214)
.+||+. +. ++|+.|++.++...
T Consensus 214 tsLP~~-l~--~~L~~L~L~~N~Lt 235 (788)
T PRK15387 214 TTLPDC-LP--AHITTLVIPDNNLT 235 (788)
T ss_pred CcCCcc-hh--cCCCEEEccCCcCC
Confidence 345654 32 25666666666553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.61 E-value=9.3e-05 Score=69.58 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=61.8
Q ss_pred ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEE
Q 028049 78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCL 157 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L 157 (214)
..|+.|++++ +.+..++. + ..+|+.|+++++.+..++. ..++|+.|+++++ ++..+|.. +++|+.|
T Consensus 342 ~~Lq~LdLS~-N~Ls~LP~-l--p~~L~~L~Ls~N~L~~LP~-------l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~L 407 (788)
T PRK15387 342 SGLQELSVSD-NQLASLPT-L--PSELYKLWAYNNRLTSLPA-------LPSGLKELIVSGN-RLTSLPVL--PSELKEL 407 (788)
T ss_pred cccceEecCC-CccCCCCC-C--CcccceehhhccccccCcc-------cccccceEEecCC-cccCCCCc--ccCCCEE
Confidence 4678888876 35555431 1 2467777777655655431 1356778888764 66766642 4567778
Q ss_pred eEecCcccccccccccchhhHH-------HhhhcccCCCCCccCeeecCccc
Q 028049 158 RILDCDDMEEIISVENFEKLIE-------VSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 158 ~i~~C~~l~~i~~~~~~~~l~~-------~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
+++++ .+..++..- ..+.. +..+|..+..+++|+.|++.+.|
T Consensus 408 dLS~N-~LssIP~l~--~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 408 MVSGN-RLTSLPMLP--SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EccCC-cCCCCCcch--hhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 77775 355544211 01111 12334455567778888887764
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.61 E-value=3.9e-05 Score=64.25 Aligned_cols=13 Identities=31% Similarity=0.187 Sum_probs=9.2
Q ss_pred CCccCeeecCccc
Q 028049 190 FSGLESLSLGNAS 202 (214)
Q Consensus 190 f~~L~~L~l~~cp 202 (214)
.++|++|++.+|.
T Consensus 249 ~~~L~~L~l~~n~ 261 (319)
T cd00116 249 NISLLTLSLSCND 261 (319)
T ss_pred CCCceEEEccCCC
Confidence 4677888877773
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.61 E-value=9.9e-05 Score=69.35 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=16.6
Q ss_pred CccEEeeecCcCCccCcccCCCCCccEEeEecC
Q 028049 130 KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDC 162 (214)
Q Consensus 130 ~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C 162 (214)
+|+.|++.++ ++..+|. ...++|+.|++.+|
T Consensus 305 sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N 335 (754)
T PRK15370 305 GITHLNVQSN-SLTALPE-TLPPGLKTLEAGEN 335 (754)
T ss_pred hHHHHHhcCC-ccccCCc-cccccceeccccCC
Confidence 4555555543 4444443 12356777777665
No 19
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00017 Score=62.97 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=40.1
Q ss_pred hccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccc-ccccee
Q 028049 47 EIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEE-SNLEDW 117 (214)
Q Consensus 47 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~-~~l~~l 117 (214)
.++.++++..|+++-.. +..++ .+..+++.|.+++|..++.++..++ .+|++|.+.+ .+++.+
T Consensus 47 r~~~~~~l~~L~Is~c~---L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 47 QIEEARASGRLYIKDCD---IESLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHHhcCCCEEEeCCCC---CcccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc
Confidence 34455777777776433 33332 3445788888888888877654343 4788888877 466554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.57 E-value=1.9e-05 Score=66.14 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.0
Q ss_pred hccCcccceEEccccCc
Q 028049 9 ISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~ 25 (214)
+..+++|+.|++.+|.+
T Consensus 77 l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 77 LTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHhcCceeEEEccCCCC
Confidence 56788999999988877
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.50 E-value=0.00015 Score=46.00 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=17.3
Q ss_pred ccEEeecCCCCCCchh-hhcccccccchhhcccccccee
Q 028049 80 TQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDW 117 (214)
Q Consensus 80 l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l 117 (214)
++.|+++++ .++.++ ..+..+++|++|+++++.+..+
T Consensus 3 L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i 40 (61)
T PF13855_consen 3 LESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSI 40 (61)
T ss_dssp ESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEE
T ss_pred CcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCcc
Confidence 444555544 344443 3344455555555555444444
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.50 E-value=6.2e-06 Score=70.88 Aligned_cols=150 Identities=12% Similarity=0.136 Sum_probs=76.6
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccc------cchh-hHhhhhhccCCccCceeeEEecccchhhhccCCc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKV------LSAD-AESLMKEIHCLEQLNLITLSLHGSRGVENFLKFP 74 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~------~~~~-~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~ 74 (214)
.++|++ |+++-+|..|+..++...+.|+++.... ++.. -.+..++.-..+.|+.++..-.....++ ..-
T Consensus 127 ~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP---~~l 202 (565)
T KOG0472|consen 127 KELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLP---PEL 202 (565)
T ss_pred eecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCC---hhh
Confidence 356665 7788888888877777755554332110 0000 0001111111233444443222222222 111
Q ss_pred chhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCC
Q 028049 75 KLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPN 153 (214)
Q Consensus 75 ~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~ 153 (214)
.....+..|+++. +.+..+| .++....|+.|++..+.++.++.+. ..+++++..|++++ ++++.+|. ++.+.+
T Consensus 203 g~l~~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~---~~~L~~l~vLDLRd-Nklke~Pde~clLrs 276 (565)
T KOG0472|consen 203 GGLESLELLYLRR-NKIRFLP-EFPGCSLLKELHVGENQIEMLPAEH---LKHLNSLLVLDLRD-NKLKEVPDEICLLRS 276 (565)
T ss_pred cchhhhHHHHhhh-cccccCC-CCCccHHHHHHHhcccHHHhhHHHH---hcccccceeeeccc-cccccCchHHHHhhh
Confidence 1112334444433 2333333 3445555666665555555544322 24688888888887 58899986 666788
Q ss_pred ccEEeEec
Q 028049 154 LKCLRILD 161 (214)
Q Consensus 154 L~~L~i~~ 161 (214)
|++|++++
T Consensus 277 L~rLDlSN 284 (565)
T KOG0472|consen 277 LERLDLSN 284 (565)
T ss_pred hhhhcccC
Confidence 88888876
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.49 E-value=2.1e-05 Score=71.21 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=85.4
Q ss_pred CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchh---------------
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGV--------------- 67 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l--------------- 67 (214)
-||++ |-+|.-|.+||++++.....|++.+ ..+++-+|.++..++.++
T Consensus 94 GiP~d-iF~l~dLt~lDLShNqL~EvP~~LE----------------~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 94 GIPTD-IFRLKDLTILDLSHNQLREVPTNLE----------------YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred CCCch-hcccccceeeecchhhhhhcchhhh----------------hhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 47876 8899999999999988755554443 333333333332222222
Q ss_pred ------hhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccc--cccceeecccccccCCCCCccEEeeec
Q 028049 68 ------ENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEE--SNLEDWNVDCAGEVQKMPKLHSVLIWN 138 (214)
Q Consensus 68 ------~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~--~~l~~l~~~~~~~~~~~~~L~~L~I~~ 138 (214)
+.++--.+...+++.|.+++-+- ..+- -.++.|++|+.|.+++ ..+..++...+ .+.+|+.++++
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld----~l~NL~dvDlS- 230 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD----DLHNLRDVDLS- 230 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchh----hhhhhhhcccc-
Confidence 11111112234566777766332 1111 2466778888888887 33444443333 47899999997
Q ss_pred CcCCccCcc-cCCCCCccEEeEecCcccccc
Q 028049 139 CSNVKDLTW-LVFAPNLKCLRILDCDDMEEI 168 (214)
Q Consensus 139 C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i 168 (214)
|++|..+|. +-.+++|..|.+++ ++++++
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~-N~iteL 260 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSG-NKITEL 260 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCc-Cceeee
Confidence 678888885 66789999999987 344444
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.47 E-value=3.6e-06 Score=64.81 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=77.7
Q ss_pred ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049 10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN 89 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~ 89 (214)
-.+++...|-+++++.+.- .+.+.+| .+|+.|.+.... ++.++....-.+.++.|.++ .+
T Consensus 30 f~~s~ITrLtLSHNKl~~v-------------ppnia~l---~nlevln~~nnq---ie~lp~~issl~klr~lnvg-mn 89 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVV-------------PPNIAEL---KNLEVLNLSNNQ---IEELPTSISSLPKLRILNVG-MN 89 (264)
T ss_pred cchhhhhhhhcccCceeec-------------CCcHHHh---hhhhhhhcccch---hhhcChhhhhchhhhheecc-hh
Confidence 3455666667777765221 1123444 555565554332 33333222223456777764 34
Q ss_pred CCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCccc
Q 028049 90 SLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDM 165 (214)
Q Consensus 90 ~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l 165 (214)
.+..+|..++.++.|+.|++.++++.+-.. .|.-..+..|+.|++.+ +.++.+|. ++.+.+|+.|.+++-+-+
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~~l--pgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNENSL--PGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccccC--CcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchh
Confidence 544445557778889999988866543211 11112356688888887 46788875 888999999999885433
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00013 Score=63.36 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=88.4
Q ss_pred hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCC--cchhccccEEee
Q 028049 8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKF--PKLQTITQALHI 85 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~--~~l~~~l~~L~l 85 (214)
++-.+++.+.|+++++=+..| . ....=.+.|++|+.|.++-... .....+ ....++++.|.|
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw------------~-~v~~i~eqLp~Le~LNls~Nrl---~~~~~s~~~~~l~~lK~L~l 204 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNW------------F-PVLKIAEQLPSLENLNLSSNRL---SNFISSNTTLLLSHLKQLVL 204 (505)
T ss_pred hhhhCCcceeecchhhhHHhH------------H-HHHHHHHhcccchhcccccccc---cCCccccchhhhhhhheEEe
Confidence 344555555555555544333 1 1222234556666666653322 111111 123467888999
Q ss_pred cCCCC-CCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc---ccCCCCCccEEeEec
Q 028049 86 EDCNS-LPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFAPNLKCLRILD 161 (214)
Q Consensus 86 ~~c~~-l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l~~L~~L~i~~ 161 (214)
+.|.- -.++...+..+|+|+.|++.+++...+... ...-++.|+.|+|++- .+.+++ -...+|.|+.|.+..
T Consensus 205 ~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 205 NSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---STKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred ccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc---hhhhhhHHhhccccCC-cccccccccccccccchhhhhccc
Confidence 99832 122223355678999999988432212111 1134778999999874 566665 366788888888877
Q ss_pred CcccccccccccchhhHHHhhhcccCCCCCccCeeecCc
Q 028049 162 CDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGN 200 (214)
Q Consensus 162 C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~ 200 (214)
|.- .++-..+. +++ .-...||+|++|.+..
T Consensus 281 tgi-~si~~~d~-~s~-------~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 281 TGI-ASIAEPDV-ESL-------DKTHTFPKLEYLNISE 310 (505)
T ss_pred cCc-chhcCCCc-cch-------hhhcccccceeeeccc
Confidence 632 22211100 000 1224688888887653
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=3e-05 Score=64.44 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=40.6
Q ss_pred CCCCCccEEeeecCcCCccC--cccCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049 126 QKMPKLHSVLIWNCSNVKDL--TWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNA 201 (214)
Q Consensus 126 ~~~~~L~~L~I~~C~~L~~l--p~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c 201 (214)
...|+|..|++++|..++.= ..+..++.|++|.++.|..+- +. . -.++...|+|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~-----~-------~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PE-----T-------LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hH-----H-------eeeeccCcceEEEEeccc
Confidence 35788888888888887761 125567888888888887652 10 0 013445677777777665
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.29 E-value=7.9e-05 Score=57.83 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=42.4
Q ss_pred hc-cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhh-ccCCcchhccccEEeec
Q 028049 9 IS-SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVEN-FLKFPKLQTITQALHIE 86 (214)
Q Consensus 9 i~-~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~-l~~~~~l~~~l~~L~l~ 86 (214)
++ .+.+|++|++++|... .++.+..+++|+.|.+.-..+.++.. +. +..++++.|+++
T Consensus 37 L~~~l~~L~~L~Ls~N~I~-----------------~l~~l~~L~~L~~L~L~~N~I~~i~~~l~---~~lp~L~~L~L~ 96 (175)
T PF14580_consen 37 LGATLDKLEVLDLSNNQIT-----------------KLEGLPGLPRLKTLDLSNNRISSISEGLD---KNLPNLQELYLS 96 (175)
T ss_dssp --TT-TT--EEE-TTS--S-------------------TT----TT--EEE--SS---S-CHHHH---HH-TT--EEE-T
T ss_pred hhhhhcCCCEEECCCCCCc-----------------cccCccChhhhhhcccCCCCCCccccchH---HhCCcCCEEECc
Confidence 55 5889999999999872 24456778899999988666655532 21 123578999997
Q ss_pred CCCCCCchh--hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049 87 DCNSLPLNL--LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC 139 (214)
Q Consensus 87 ~c~~l~~l~--~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C 139 (214)
+ +.+.++. ..+..+++|+.|++.++-+..-.....--...+|+|+.|+=...
T Consensus 97 ~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 97 N-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred C-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 6 3443332 45677889999998872222110000000124677777665443
No 28
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.26 E-value=0.00011 Score=63.38 Aligned_cols=112 Identities=20% Similarity=0.148 Sum_probs=71.8
Q ss_pred CChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEE
Q 028049 4 IPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQAL 83 (214)
Q Consensus 4 iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L 83 (214)
+|...|+.+++|..|+++++.... ...|++.+..|+.++++..+...+++...- ..+...
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~----------------LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~----lq~lEt 485 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLND----------------LPEEMGSLVRLQTLNLSFNRFRMLPECLYE----LQTLET 485 (565)
T ss_pred cchHHHHhhhcceeeecccchhhh----------------cchhhhhhhhhheecccccccccchHHHhh----HHHHHH
Confidence 344458999999999999986622 345677888899999986643333322210 011222
Q ss_pred eecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049 84 HIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC 139 (214)
Q Consensus 84 ~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C 139 (214)
.+..-.++.++. +.+.+|.+|..|++.++.++.++... +.+.+|++|.++|-
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~L----gnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPIL----GNMTNLRHLELDGN 538 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCCCchhhCChhh----ccccceeEEEecCC
Confidence 333334555555 44778888888888887777765433 25788888888874
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=4.9e-05 Score=63.24 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=70.1
Q ss_pred ccccEEeecCCCCCCchh--hhcccccccchhhccc-----cccceeecccccccCCCCCccEEeeecCcCCccCcc---
Q 028049 78 TITQALHIEDCNSLPLNL--LHLANMEHLEKLFIEE-----SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--- 147 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~--~~l~~l~~L~~L~i~~-----~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--- 147 (214)
.+++.|+|++|.++++.. .-+.++..|..|+++- +.+..+... -=++|..|+|+||.+--....
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h------ise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH------ISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh------hchhhhhhhhhhhHhhhhhhHHHH
Confidence 468999999999987654 2355667788888764 222211111 125788999999865322222
Q ss_pred -cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 148 -LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 148 -~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
....|+|..|++++|..++.-.. ..+..|+.|++|.++.|=
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~--------------~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCF--------------QEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHhCCceeeeccccccccCchHH--------------HHHHhcchheeeehhhhc
Confidence 23579999999999988864211 145568899999988883
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.89 E-value=0.00024 Score=66.80 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=87.4
Q ss_pred cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCC
Q 028049 11 SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNS 90 (214)
Q Consensus 11 ~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~ 90 (214)
.+..||.|++.+++. .+..+.-|.+..||++|.+.......++.-. ..+ ..-|+.|.+++ +.
T Consensus 357 ~~~~Lq~LylanN~L---------------td~c~p~l~~~~hLKVLhLsyNrL~~fpas~-~~k-le~LeeL~LSG-Nk 418 (1081)
T KOG0618|consen 357 NHAALQELYLANNHL---------------TDSCFPVLVNFKHLKVLHLSYNRLNSFPASK-LRK-LEELEELNLSG-NK 418 (1081)
T ss_pred hhHHHHHHHHhcCcc---------------cccchhhhccccceeeeeecccccccCCHHH-Hhc-hHHhHHHhccc-ch
Confidence 456778888888876 2234566788899999999866544444211 111 23467788887 56
Q ss_pred CCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCC-CCccEEeEecCcc
Q 028049 91 LPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFA-PNLKCLRILDCDD 164 (214)
Q Consensus 91 l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l-~~L~~L~i~~C~~ 164 (214)
++.++..+.++..|++|.-.++.+..++. . ..++.|+.++++ |++|+.+.. .... |+|++|+++|-..
T Consensus 419 L~~Lp~tva~~~~L~tL~ahsN~l~~fPe-~----~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 419 LTTLPDTVANLGRLHTLRAHSNQLLSFPE-L----AQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhHHHHhhhhhHHHhhcCCceeechh-h----hhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 67776555667788888877777766652 1 357889999986 788887643 1122 7899999988764
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.73 E-value=0.00018 Score=60.12 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=69.7
Q ss_pred CCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCC
Q 028049 72 KFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFA 151 (214)
Q Consensus 72 ~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l 151 (214)
.+-++.+.++.|.++. +++..+ .++..+++|..|+++++.+.++. .|. ..+.|.++|.+.+ +.+++++-+..+
T Consensus 301 ESvKL~Pkir~L~lS~-N~i~~v-~nLa~L~~L~~LDLS~N~Ls~~~-Gwh---~KLGNIKtL~La~-N~iE~LSGL~KL 373 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQ-NRIRTV-QNLAELPQLQLLDLSGNLLAECV-GWH---LKLGNIKTLKLAQ-NKIETLSGLRKL 373 (490)
T ss_pred hhhhhccceeEEeccc-cceeee-hhhhhcccceEeecccchhHhhh-hhH---hhhcCEeeeehhh-hhHhhhhhhHhh
Confidence 3345566777777765 455444 34667778888888875554431 122 3577788888876 466777666667
Q ss_pred CCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 152 PNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 152 ~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
-+|..|++++ ++++++-. + .+++.+|.|+.+.+.+-|
T Consensus 374 YSLvnLDl~~-N~Ie~lde------V-------~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 374 YSLVNLDLSS-NQIEELDE------V-------NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhheeccccc-cchhhHHH------h-------cccccccHHHHHhhcCCC
Confidence 7777777766 23333311 1 377888999888887765
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.67 E-value=0.0014 Score=61.17 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=40.5
Q ss_pred ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC-------cccCC
Q 028049 78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL-------TWLVF 150 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l-------p~~~~ 150 (214)
++|..|+|+++ ++..+ +.++.+++|+.|.+.+=.++... +. .....+.+|+.|+|+.=.+...- .....
T Consensus 173 pNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~-~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 173 PNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQ-DL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred CccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchh-hH-HHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 46777777775 33444 34556666666666651111100 00 00124677777777653333221 12334
Q ss_pred CCCccEEeEec
Q 028049 151 APNLKCLRILD 161 (214)
Q Consensus 151 l~~L~~L~i~~ 161 (214)
+|+|+.|+.++
T Consensus 249 LpeLrfLDcSg 259 (699)
T KOG3665|consen 249 LPELRFLDCSG 259 (699)
T ss_pred CccccEEecCC
Confidence 67777777664
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.66 E-value=0.0022 Score=56.09 Aligned_cols=64 Identities=20% Similarity=0.386 Sum_probs=48.9
Q ss_pred ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccc
Q 028049 99 ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIIS 170 (214)
Q Consensus 99 ~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~ 170 (214)
..+.++++|+|+++.++.++. .-++|+.|.|.+|.+++.+|.. .+++|++|++.+|.+++.++.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-------LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-------LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-------CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccccccc
Confidence 344677888888877777651 1346999999999999988852 257899999999988877664
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.36 E-value=0.0007 Score=58.35 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCChhhhccCcccceEEccccCc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
|+.||+++++.+.+|++||++++..
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~I 103 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNI 103 (498)
T ss_pred cccCChhhccchhhhceecccccch
Confidence 6789999999999999999999977
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0014 Score=57.19 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.7
Q ss_pred hhccCcccceEEccccCc
Q 028049 8 LISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~~~ 25 (214)
.+..|++||+|.++.++.
T Consensus 167 i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 167 IAEQLPSLENLNLSSNRL 184 (505)
T ss_pred HHHhcccchhcccccccc
Confidence 457899999999999987
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.96 E-value=0.0093 Score=35.26 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=20.1
Q ss_pred CccEEeeecCcCCccCcc-cCCCCCccEEeEecC
Q 028049 130 KLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDC 162 (214)
Q Consensus 130 ~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C 162 (214)
+|++|+++++ +++.+|. +..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 5666777664 6666665 666777777777666
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.72 E-value=0.0056 Score=57.27 Aligned_cols=113 Identities=18% Similarity=0.178 Sum_probs=62.9
Q ss_pred hhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccc-cccc--eeecc
Q 028049 45 MKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEE-SNLE--DWNVD 120 (214)
Q Consensus 45 l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~-~~l~--~l~~~ 120 (214)
..-..++++|..|||+-.+++++..+ +. .++|+.|.+++.+=...-. ..+-.+++|+.|+|+. .+.. .+...
T Consensus 166 ~~lc~sFpNL~sLDIS~TnI~nl~GI---S~-LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~q 241 (699)
T KOG3665|consen 166 SQLCASFPNLRSLDISGTNISNLSGI---SR-LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQ 241 (699)
T ss_pred HHHhhccCccceeecCCCCccCcHHH---hc-cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHH
Confidence 34467889999999986666554322 22 3456666666543321110 2344678999999987 2211 12111
Q ss_pred cccccCCCCCccEEeeecCcCCccCc------ccCCCCCccEEeEecCccc
Q 028049 121 CAGEVQKMPKLHSVLIWNCSNVKDLT------WLVFAPNLKCLRILDCDDM 165 (214)
Q Consensus 121 ~~~~~~~~~~L~~L~I~~C~~L~~lp------~~~~l~~L~~L~i~~C~~l 165 (214)
+-..+..+|.||.|+.++ +.+. ....-|+|+.+.+.+|...
T Consensus 242 Ylec~~~LpeLrfLDcSg----Tdi~~~~le~ll~sH~~L~~i~~~~~~~~ 288 (699)
T KOG3665|consen 242 YLECGMVLPELRFLDCSG----TDINEEILEELLNSHPNLQQIAALDCLAL 288 (699)
T ss_pred HHHhcccCccccEEecCC----cchhHHHHHHHHHhCccHhhhhhhhhhcc
Confidence 111224589999998875 3331 1234566666666555443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.63 E-value=0.0022 Score=53.77 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=8.2
Q ss_pred CcccceEEccccCc
Q 028049 12 FSKLQVLRMLHCGY 25 (214)
Q Consensus 12 L~~Lq~L~l~~~~~ 25 (214)
-+.|.+||++++..
T Consensus 283 Wq~LtelDLS~N~I 296 (490)
T KOG1259|consen 283 WQELTELDLSGNLI 296 (490)
T ss_pred Hhhhhhccccccch
Confidence 34566666666654
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.57 E-value=0.004 Score=56.13 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=77.3
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT 80 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l 80 (214)
++.||.. |++|..|..|+++.++...+|...+ .| -|+.|-+.......++. -..+...+
T Consensus 110 ~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC----------------~l-pLkvli~sNNkl~~lp~---~ig~~~tl 168 (722)
T KOG0532|consen 110 IRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLC----------------DL-PLKVLIVSNNKLTSLPE---EIGLLPTL 168 (722)
T ss_pred ceecchh-hhhhhHHHHhhhccchhhcCChhhh----------------cC-cceeEEEecCccccCCc---ccccchhH
Confidence 4678874 8889999999998887744432222 12 24444444333333221 11233455
Q ss_pred cEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeE
Q 028049 81 QALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRI 159 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i 159 (214)
..|+.+.| .++.+++.+..+.+|+.|.+..+++..++.+.. .+ .|.+|+++ |+++.++|. +..+..|++|-+
T Consensus 169 ~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~----~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 169 AHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC----SL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred HHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh----CC-ceeeeecc-cCceeecchhhhhhhhheeeee
Confidence 55666554 445565556677777777777766666543221 12 35556664 778888874 666777777776
Q ss_pred ec
Q 028049 160 LD 161 (214)
Q Consensus 160 ~~ 161 (214)
.+
T Consensus 242 en 243 (722)
T KOG0532|consen 242 EN 243 (722)
T ss_pred cc
Confidence 43
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.011 Score=46.66 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=35.3
Q ss_pred hhhhccCCccCceeeEEecccch-----hhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccc
Q 028049 44 LMKEIHCLEQLNLITLSLHGSRG-----VENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEE 111 (214)
Q Consensus 44 ~l~eL~~L~~L~~L~i~~~~~~~-----l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~ 111 (214)
.++.|..++.++.+.+. ++.. ++.+- ...++|+.|+|++|+.+++-. ..+..+++|+.|.|++
T Consensus 117 Gle~L~~l~~i~~l~l~--~ck~~dD~~L~~l~---~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLA--NCKYFDDWCLERLG---GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHhccchhhhheec--cccchhhHHHHHhc---ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45555555555554432 2222 22222 245677777777777776543 3455666777777666
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.18 E-value=0.034 Score=48.20 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=29.0
Q ss_pred hccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccc
Q 028049 47 EIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEE 111 (214)
Q Consensus 47 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~ 111 (214)
.+..+++|+.|++.-.....++.... ....++.|++++- .+..++........|+++.+.+
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~---~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLS---NLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhh---hhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcC
Confidence 45555666666665444433333220 2235666666553 3344432112223466666655
No 42
>PLN03150 hypothetical protein; Provisional
Probab=95.11 E-value=0.043 Score=50.91 Aligned_cols=79 Identities=9% Similarity=0.118 Sum_probs=53.9
Q ss_pred ccEEeecCCCCCCchhhhcccccccchhhccccccc-eeecccccccCCCCCccEEeeecCcCCc-cCcc-cCCCCCccE
Q 028049 80 TQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLE-DWNVDCAGEVQKMPKLHSVLIWNCSNVK-DLTW-LVFAPNLKC 156 (214)
Q Consensus 80 l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~-~l~~~~~~~~~~~~~L~~L~I~~C~~L~-~lp~-~~~l~~L~~ 156 (214)
++.|+|+++.--..++..+..+++|+.|+++++.+. .++... ..+++|+.|+++++ ++. .+|. +..+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence 456677664322233355677888999998886664 232222 35889999999987 444 5664 778899999
Q ss_pred EeEecCc
Q 028049 157 LRILDCD 163 (214)
Q Consensus 157 L~i~~C~ 163 (214)
|+++++.
T Consensus 495 L~Ls~N~ 501 (623)
T PLN03150 495 LNLNGNS 501 (623)
T ss_pred EECcCCc
Confidence 9998875
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.04 E-value=0.028 Score=33.18 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=25.0
Q ss_pred cccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhh
Q 028049 13 SKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE 68 (214)
Q Consensus 13 ~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~ 68 (214)
++||+|++.+++...+ -+++..+++|+.++++...+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l----------------~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL----------------PPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSH----------------GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCccc----------------CchHhCCCCCCEEEecCCCCCCCc
Confidence 5789999999987322 113677788888887755444433
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.88 E-value=0.025 Score=49.07 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=59.4
Q ss_pred CCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCC
Q 028049 50 CLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMP 129 (214)
Q Consensus 50 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~ 129 (214)
.+..|+.++++-.....++... .....++.+.+++-..... ...+..+.++..+++.+..++.+.. . ...++
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~~-~---~~~l~ 255 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLPE-S---IGNLS 255 (394)
T ss_pred hhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeeccc-h---hcccc
Confidence 4466777776654444444321 2334577777766432222 2345556666666655544443211 1 12467
Q ss_pred CccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049 130 KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD 161 (214)
Q Consensus 130 ~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~ 161 (214)
+++.|.++++ .+.+++.+..+.+++.|++.+
T Consensus 256 ~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 256 NLETLDLSNN-QISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred ccceeccccc-cccccccccccCccCEEeccC
Confidence 7888888764 777777666778888888876
No 45
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.0055 Score=48.35 Aligned_cols=66 Identities=21% Similarity=0.436 Sum_probs=41.1
Q ss_pred cccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccC--cccCCCCCccEEeEecCccc
Q 028049 98 LANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL--TWLVFAPNLKCLRILDCDDM 165 (214)
Q Consensus 98 l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l--p~~~~l~~L~~L~i~~C~~l 165 (214)
+..++.++.|.+.+ .++..+..+..+ ..+++|+.|+|++|+++++- -++..+++|+.|++++.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 44455566666665 555554433322 35778888888888887764 34556777777777776544
No 46
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.0068 Score=50.31 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=54.1
Q ss_pred ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049 10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN 89 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~ 89 (214)
+.|.+-+.|+.+||+.. +... .+..+.|++|.+++..++++..+... ..|+.|+|+. +
T Consensus 16 sdl~~vkKLNcwg~~L~--------------DIsi---c~kMp~lEVLsLSvNkIssL~pl~rC----trLkElYLRk-N 73 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLD--------------DISI---CEKMPLLEVLSLSVNKISSLAPLQRC----TRLKELYLRK-N 73 (388)
T ss_pred hHHHHhhhhcccCCCcc--------------HHHH---HHhcccceeEEeeccccccchhHHHH----HHHHHHHHHh-c
Confidence 34778889999999871 2222 34458899999998887777666433 3466777764 2
Q ss_pred CCCchh--hhcccccccchhhccc
Q 028049 90 SLPLNL--LHLANMEHLEKLFIEE 111 (214)
Q Consensus 90 ~l~~l~--~~l~~l~~L~~L~i~~ 111 (214)
.+.++. .-+.++++|+.|++..
T Consensus 74 ~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 74 CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred ccccHHHHHHHhcCchhhhHhhcc
Confidence 333332 3577888999998875
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.86 E-value=0.0044 Score=55.85 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=52.4
Q ss_pred ccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEe
Q 028049 80 TQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLR 158 (214)
Q Consensus 80 l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~ 158 (214)
|+.|-+++ +.++.++..++..++|..|+.+.+++..++.... .+.+|+.+.+.. +++.++|. +. --.|..|+
T Consensus 145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~----~l~slr~l~vrR-n~l~~lp~El~-~LpLi~lD 217 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG----YLTSLRDLNVRR-NHLEDLPEELC-SLPLIRLD 217 (722)
T ss_pred ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhh----hHHHHHHHHHhh-hhhhhCCHHHh-CCceeeee
Confidence 45565655 4556666455666778888877777666653322 367888888876 47777774 33 22356666
Q ss_pred EecCcccccccc
Q 028049 159 ILDCDDMEEIIS 170 (214)
Q Consensus 159 i~~C~~l~~i~~ 170 (214)
+ .|+++..++-
T Consensus 218 f-ScNkis~iPv 228 (722)
T KOG0532|consen 218 F-SCNKISYLPV 228 (722)
T ss_pred c-ccCceeecch
Confidence 5 5777766653
No 48
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.33 E-value=0.049 Score=25.28 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=7.0
Q ss_pred CccEEeeecCcCCccCc
Q 028049 130 KLHSVLIWNCSNVKDLT 146 (214)
Q Consensus 130 ~L~~L~I~~C~~L~~lp 146 (214)
+|+.|+|++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 55666666653 55443
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.10 E-value=0.016 Score=50.49 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=20.1
Q ss_pred CCCCCccEEeeecCcCCccCcc---cCCCCCccEEeEecCc
Q 028049 126 QKMPKLHSVLIWNCSNVKDLTW---LVFAPNLKCLRILDCD 163 (214)
Q Consensus 126 ~~~~~L~~L~I~~C~~L~~lp~---~~~l~~L~~L~i~~C~ 163 (214)
..-++|+.+.+.+|.++.+.-. ....+.|+.+++.+|.
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 3456777777777766554421 2234445555555443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=0.17 Score=42.62 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=46.3
Q ss_pred ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEeccc-chhhhccCCcchhccccEEeecCC
Q 028049 10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGS-RGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~-~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
+..+-+++||+.++....|. + ...=++.+++|+.|.++-... +.+..++ --..+++.|.+++-
T Consensus 68 ~~~~~v~elDL~~N~iSdWs------------e-I~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWS------------E-IGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT 131 (418)
T ss_pred HHhhhhhhhhcccchhccHH------------H-HHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC
Confidence 34566667777777665552 1 112245668888888763332 1222332 01246788888663
Q ss_pred CCC--Cchhhhcccccccchhhccccccc
Q 028049 89 NSL--PLNLLHLANMEHLEKLFIEESNLE 115 (214)
Q Consensus 89 ~~l--~~l~~~l~~l~~L~~L~i~~~~l~ 115 (214)
++ +..-+++..+|.++.|.++.+++.
T Consensus 132 -~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 132 -GLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred -CCChhhhhhhhhcchhhhhhhhccchhh
Confidence 22 111134555666666666554333
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.52 E-value=0.11 Score=45.68 Aligned_cols=86 Identities=22% Similarity=0.379 Sum_probs=47.0
Q ss_pred ccccEEeecCC-CCCCchh----hhcccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcc---c
Q 028049 78 TITQALHIEDC-NSLPLNL----LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW---L 148 (214)
Q Consensus 78 ~~l~~L~l~~c-~~l~~l~----~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~---~ 148 (214)
+.++.|++++| ......+ ......++|++|++.. ..+......+.. ...++|+.|.+.+|..++.-.. .
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~--~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA--SRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH--hhCCCcceEccCCCCccchhHHHHHH
Confidence 35666666663 2221111 1123345566666665 333332221111 2367888888888877654421 3
Q ss_pred CCCCCccEEeEecCccc
Q 028049 149 VFAPNLKCLRILDCDDM 165 (214)
Q Consensus 149 ~~l~~L~~L~i~~C~~l 165 (214)
..+++|++|++++|..+
T Consensus 292 ~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhcCcccEEeeecCccc
Confidence 45778888888888777
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.46 E-value=0.24 Score=43.40 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=77.3
Q ss_pred ccCcccceEEccccCcccccccccccccchhhHhhhhhccCC-ccCceeeEEecccchhhhc--cCCcchhccccEEeec
Q 028049 10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCL-EQLNLITLSLHGSRGVENF--LKFPKLQTITQALHIE 86 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L-~~L~~L~i~~~~~~~l~~l--~~~~~l~~~l~~L~l~ 86 (214)
.....||+|+..+|... ....+..|+.- .+|+.+.+.- +..+... .....-...|+.+++.
T Consensus 291 ~~c~~lq~l~~s~~t~~--------------~d~~l~aLg~~~~~L~~l~l~~--c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDI--------------TDEVLWALGQHCHNLQVLELSG--CQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhHhhhhcccCCCCC--------------chHHHHHHhcCCCceEEEeccc--cchhhhhhhhhhhcCChhhhhhccc
Confidence 34677888888888651 22334455443 5788877652 2111110 0001112356777777
Q ss_pred CCCCCCchh--hhcccccccchhhccc-cccceeecc-cccccCCCCCccEEeeecCcCCccCc--ccCCCCCccEEeEe
Q 028049 87 DCNSLPLNL--LHLANMEHLEKLFIEE-SNLEDWNVD-CAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFAPNLKCLRIL 160 (214)
Q Consensus 87 ~c~~l~~l~--~~l~~l~~L~~L~i~~-~~l~~l~~~-~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l~~L~~L~i~ 160 (214)
+|-....-. +.-.+.+.|++|.+++ ..+..-.+. ..........|..+.+.+|+.+..-. .+...++||.+++.
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 775543221 2224456788888775 222221110 01111346678899999998887543 35567788888888
Q ss_pred cCccc
Q 028049 161 DCDDM 165 (214)
Q Consensus 161 ~C~~l 165 (214)
+|...
T Consensus 435 ~~q~v 439 (483)
T KOG4341|consen 435 DCQDV 439 (483)
T ss_pred chhhh
Confidence 88654
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.36 E-value=0.027 Score=52.53 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=50.9
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
+.-|+.||.|++++++++. ...|.-+.+|+.||++.+....++++-.. .-.|+.|.|++
T Consensus 183 Lqll~ale~LnLshNk~~~-----------------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~---gc~L~~L~lrn- 241 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTK-----------------VDNLRRLPKLKHLDLSYNCLRHVPQLSMV---GCKLQLLNLRN- 241 (1096)
T ss_pred HHHHHHhhhhccchhhhhh-----------------hHHHHhcccccccccccchhccccccchh---hhhheeeeecc-
Confidence 4456778888888888721 22456678888889887776666655332 12467777766
Q ss_pred CCCCchhhhcccccccchhhccc
Q 028049 89 NSLPLNLLHLANMEHLEKLFIEE 111 (214)
Q Consensus 89 ~~l~~l~~~l~~l~~L~~L~i~~ 111 (214)
+.++.+ -.+.++++|+.|++++
T Consensus 242 N~l~tL-~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSY 263 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhH
Confidence 334433 2345666777777655
No 54
>PLN03150 hypothetical protein; Provisional
Probab=89.22 E-value=0.49 Score=44.02 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=39.2
Q ss_pred CCCCCccEEeeecCcCCc-cCcc-cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049 126 QKMPKLHSVLIWNCSNVK-DLTW-LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNA 201 (214)
Q Consensus 126 ~~~~~L~~L~I~~C~~L~-~lp~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c 201 (214)
..+++|+.|+++++ ++. .+|. +..+++|+.|+++++.--..++. .+..+++|+.|++.++
T Consensus 439 ~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~---------------~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 439 SKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE---------------SLGQLTSLRILNLNGN 500 (623)
T ss_pred hCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCch---------------HHhcCCCCCEEECcCC
Confidence 35788999999886 444 5663 77789999999988643222322 3345556666666554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.47 E-value=0.52 Score=37.53 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=48.6
Q ss_pred cCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhc-ccccccchhhccccccceeecccccccCCCCCc
Q 028049 53 QLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHL-ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKL 131 (214)
Q Consensus 53 ~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l-~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L 131 (214)
....++++-.+...++.++. .+.|.+|.+++ +.++.+...+ ..+++|+.|.+.++++.++. +.+ ....+|.|
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~----l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~-dl~-pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPH----LPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELG-DLD-PLASCPKL 115 (233)
T ss_pred ccceecccccchhhcccCCC----ccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhh-hcc-hhccCCcc
Confidence 45555555333333333322 23466676654 4555543222 33456777777775554442 111 11345666
Q ss_pred cEEeeecCcCCccCc-----ccCCCCCccEEeEecC
Q 028049 132 HSVLIWNCSNVKDLT-----WLVFAPNLKCLRILDC 162 (214)
Q Consensus 132 ~~L~I~~C~~L~~lp-----~~~~l~~L~~L~i~~C 162 (214)
+.|.+-+- .++.-. .+..+|+|+.|+...-
T Consensus 116 ~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCC-chhcccCceeEEEEecCcceEeehhhh
Confidence 66666542 111111 1345677777776543
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.79 E-value=0.33 Score=39.79 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=52.1
Q ss_pred cccEEeecCCC-CC-CchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-----cCCC
Q 028049 79 ITQALHIEDCN-SL-PLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-----LVFA 151 (214)
Q Consensus 79 ~l~~L~l~~c~-~l-~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-----~~~l 151 (214)
+|+.|.++.-. ++ ..+.......++|++|+++++++..+. .......+.+|..|.+.+|+-.+ +.. ...+
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls--tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll 142 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS--TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLL 142 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc--ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHh
Confidence 56777775431 11 122122345578888888885555431 11112357788888888885544 421 3347
Q ss_pred CCccEEeEecCccccccc
Q 028049 152 PNLKCLRILDCDDMEEII 169 (214)
Q Consensus 152 ~~L~~L~i~~C~~l~~i~ 169 (214)
|+|++|+-.++..-+...
T Consensus 143 ~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 143 PSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred hhhccccccccCCccccc
Confidence 888998888887766554
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=85.75 E-value=0.56 Score=23.04 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=8.6
Q ss_pred CccEEeEecCcccccc
Q 028049 153 NLKCLRILDCDDMEEI 168 (214)
Q Consensus 153 ~L~~L~i~~C~~l~~i 168 (214)
+|++|++++| +++++
T Consensus 1 ~L~~Ldls~n-~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSI 15 (22)
T ss_dssp TESEEEETSS-EESEE
T ss_pred CccEEECCCC-cCEeC
Confidence 3566666666 55544
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.67 E-value=0.4 Score=39.28 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=48.2
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCc---cCcccCCCCCcc
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVK---DLTWLVFAPNLK 155 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~---~lp~~~~l~~L~ 155 (214)
.++.+++.++ ++.++ ..++.+++|++|.+++++.... ....-.....|+|+++.+++ ++++ +++.+..+++|.
T Consensus 44 ~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhcc-ceeec-ccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecC-Cccccccccchhhhhcchh
Confidence 3455555554 33333 3567778888888876322110 00000012358888888876 3544 344455677888
Q ss_pred EEeEecCcccc
Q 028049 156 CLRILDCDDME 166 (214)
Q Consensus 156 ~L~i~~C~~l~ 166 (214)
.|+..+|....
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 88888887665
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.61 E-value=0.56 Score=41.23 Aligned_cols=139 Identities=22% Similarity=0.250 Sum_probs=75.5
Q ss_pred ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEec-ccchhhh--ccCCcchhccccEEeec
Q 028049 10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH-GSRGVEN--FLKFPKLQTITQALHIE 86 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~-~~~~l~~--l~~~~~l~~~l~~L~l~ 86 (214)
...++|+.|++.+|... .+.....-....++|+.++++.. ....... ........+++++|+++
T Consensus 185 ~~~~~L~~l~l~~~~~~-------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKI-------------TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS 251 (482)
T ss_pred hhCchhhHhhhcccccC-------------ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence 45788888988888651 11111222345577777776531 0000000 00111223578889999
Q ss_pred CCCCCCchh-hhc-ccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccC--c-ccCCCCCccEEeEe
Q 028049 87 DCNSLPLNL-LHL-ANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL--T-WLVFAPNLKCLRIL 160 (214)
Q Consensus 87 ~c~~l~~l~-~~l-~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l--p-~~~~l~~L~~L~i~ 160 (214)
.|..+.+.. ..+ ...++|+.|.+.+ ..+..-..... ...+++|++|+|++|..+..- . ....+++|+.+.+.
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i--~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI--AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH--HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 988665443 222 2256788888655 33332111000 135788999999999987542 1 23346666665555
Q ss_pred cCc
Q 028049 161 DCD 163 (214)
Q Consensus 161 ~C~ 163 (214)
++.
T Consensus 330 ~~~ 332 (482)
T KOG1947|consen 330 SLN 332 (482)
T ss_pred hcC
Confidence 544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=84.05 E-value=0.86 Score=36.31 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=48.1
Q ss_pred ccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC---cccCCCCCccE
Q 028049 80 TQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL---TWLVFAPNLKC 156 (214)
Q Consensus 80 l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l---p~~~~l~~L~~ 156 (214)
...+++++- .+..+ ..++.++.|..|.+.++.+..|.... ...+|+|+.|.+.+ +++..+ -.+..+|.|++
T Consensus 44 ~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 44 FDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cceeccccc-chhhc-ccCCCccccceEEecCCcceeeccch---hhhccccceEEecC-cchhhhhhcchhccCCccce
Confidence 344566553 22333 25677788888888887777664322 24689999999987 344444 33556777777
Q ss_pred EeEec
Q 028049 157 LRILD 161 (214)
Q Consensus 157 L~i~~ 161 (214)
|.+-+
T Consensus 118 Ltll~ 122 (233)
T KOG1644|consen 118 LTLLG 122 (233)
T ss_pred eeecC
Confidence 77655
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.51 E-value=0.1 Score=43.57 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=46.6
Q ss_pred hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecC
Q 028049 8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIED 87 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~ 87 (214)
++-+|+.|+||.++-++..+ ++-++..++|++|.+.-..++++..+..... .+.|+.|.|..
T Consensus 36 ic~kMp~lEVLsLSvNkIss-----------------L~pl~rCtrLkElYLRkN~I~sldEL~YLkn-lpsLr~LWL~E 97 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISS-----------------LAPLQRCTRLKELYLRKNCIESLDELEYLKN-LPSLRTLWLDE 97 (388)
T ss_pred HHHhcccceeEEeecccccc-----------------chhHHHHHHHHHHHHHhcccccHHHHHHHhc-CchhhhHhhcc
Confidence 34689999999999988732 2223334455555544344444444433222 24577777765
Q ss_pred CCCCCchh-----hhcccccccchhh
Q 028049 88 CNSLPLNL-----LHLANMEHLEKLF 108 (214)
Q Consensus 88 c~~l~~l~-----~~l~~l~~L~~L~ 108 (214)
-+....-. ..+..+++|++|+
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 33332111 2366777888775
No 62
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.08 E-value=0.79 Score=23.44 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=10.2
Q ss_pred CccCeeecCcccccc
Q 028049 191 SGLESLSLGNASNLK 205 (214)
Q Consensus 191 ~~L~~L~l~~cp~L~ 205 (214)
++|++|.+++|+++.
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 567777777777654
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=82.98 E-value=0.38 Score=41.16 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=30.1
Q ss_pred hhcccccccchhhccccccceeecccc-cccCCCCCccEEeeecCcCCccCc-------ccCCCCCccEEeEecC
Q 028049 96 LHLANMEHLEKLFIEESNLEDWNVDCA-GEVQKMPKLHSVLIWNCSNVKDLT-------WLVFAPNLKCLRILDC 162 (214)
Q Consensus 96 ~~l~~l~~L~~L~i~~~~l~~l~~~~~-~~~~~~~~L~~L~I~~C~~L~~lp-------~~~~l~~L~~L~i~~C 162 (214)
..+...++|++|++.++-+..-..... -.-..+++|+.|.+.+| .+++=- .-...|+|+.|.+.++
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc
Confidence 344555666666666532221100000 00134666777777776 343210 0112566666666555
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=81.73 E-value=0.75 Score=40.42 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.6
Q ss_pred hccCcccceEEccccCc
Q 028049 9 ISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~ 25 (214)
++.+++|..|+++++..
T Consensus 91 l~~~~~l~~l~l~~n~i 107 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI 107 (414)
T ss_pred cccccceeeeeccccch
Confidence 45566666666666655
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=79.36 E-value=1 Score=39.56 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=15.2
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccce
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLED 116 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~ 116 (214)
+|+.|++++ +.+..+ ..+..++.|+.|++.++.+..
T Consensus 119 ~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 119 NLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGNLISD 154 (414)
T ss_pred cchheeccc-cccccc-cchhhccchhhheeccCcchh
Confidence 444454443 233333 123334445555555544443
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=75.96 E-value=0.32 Score=45.74 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=34.6
Q ss_pred CCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCC-CCCccEEeEec
Q 028049 88 CNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVF-APNLKCLRILD 161 (214)
Q Consensus 88 c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~-l~~L~~L~i~~ 161 (214)
|+.++.+-.+++-++.|++|+++++++.... . ...++.|++|+|+. +.|+.+|.+.. --+|+.|.+++
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~--~---Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKVD--N---LRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhhH--H---HHhccccccccccc-chhccccccchhhhhheeeeecc
Confidence 3444444455666667777777764444321 1 12366677777753 35565654221 11255555544
No 67
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=73.88 E-value=1.8 Score=38.00 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=18.4
Q ss_pred CCCCccEEeeecCcCCccCcc--cCCCCCccEEeE
Q 028049 127 KMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRI 159 (214)
Q Consensus 127 ~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i 159 (214)
.+..|+.|.++| ++++.+.| ...+.+|.+|.+
T Consensus 320 ~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 320 GLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccccceeeeecC-CeeEEEecccccccceeeeeeh
Confidence 356677777776 46666654 223445555554
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=71.31 E-value=3.3 Score=20.87 Aligned_cols=16 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred CcccceEEccccCccc
Q 028049 12 FSKLQVLRMLHCGYAH 27 (214)
Q Consensus 12 L~~Lq~L~l~~~~~~~ 27 (214)
|++|+.|++.++....
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 5789999999998743
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=71.31 E-value=3.3 Score=20.87 Aligned_cols=16 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred CcccceEEccccCccc
Q 028049 12 FSKLQVLRMLHCGYAH 27 (214)
Q Consensus 12 L~~Lq~L~l~~~~~~~ 27 (214)
|++|+.|++.++....
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 5789999999998743
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=68.23 E-value=3.3 Score=20.48 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=9.9
Q ss_pred CcccceEEccccCc
Q 028049 12 FSKLQVLRMLHCGY 25 (214)
Q Consensus 12 L~~Lq~L~l~~~~~ 25 (214)
+++|++|++++|+.
T Consensus 1 ~~~L~~L~l~~n~i 14 (24)
T PF13516_consen 1 NPNLETLDLSNNQI 14 (24)
T ss_dssp -TT-SEEE-TSSBE
T ss_pred CCCCCEEEccCCcC
Confidence 47899999999987
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.41 E-value=2.2 Score=36.25 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=39.2
Q ss_pred ccccEEeecCCCCCCchh---hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc------c
Q 028049 78 TITQALHIEDCNSLPLNL---LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW------L 148 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~---~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~------~ 148 (214)
..++.+++.+ +.+..+. ..+.+||.|+.|+++.+.+..-. +.......+|+.|.+.| +.++| +
T Consensus 71 ~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I---~~lp~p~~nl~~lVLNg----T~L~w~~~~s~l 142 (418)
T KOG2982|consen 71 TDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDI---KSLPLPLKNLRVLVLNG----TGLSWTQSTSSL 142 (418)
T ss_pred hhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcc---ccCcccccceEEEEEcC----CCCChhhhhhhh
Confidence 3455666644 2222222 34667788888888764443211 10012355777777765 34444 2
Q ss_pred CCCCCccEEeEec
Q 028049 149 VFAPNLKCLRILD 161 (214)
Q Consensus 149 ~~l~~L~~L~i~~ 161 (214)
..+|.+++|++++
T Consensus 143 ~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 143 DDLPKVTELHMSD 155 (418)
T ss_pred hcchhhhhhhhcc
Confidence 2356666666654
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=54.81 E-value=49 Score=23.06 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=35.4
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK 155 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~ 155 (214)
.++.+.+.+ .++.+. ..+....+|+.+.+.+ +++.+.... -...++++.+.+.+ .++.++. ....++|+
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~-~~~~i~~~~---F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPN-NLTSIGDNA---FSNCKSLESITFPN--NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T--EEEETS--T--EE-TTTTTT-TT-SEEEESS-TTSCE-TTT---TTT-TT-EEEEETS--TT-EE-TTTTTT-TTEC
T ss_pred CCCEEEECC--CeeEeChhhcccccccccccccc-cccccceee---eecccccccccccc--ccccccccccccccccc
Confidence 356666653 344444 3456666777777665 344443211 12355788888865 5666653 33477888
Q ss_pred EEeEe
Q 028049 156 CLRIL 160 (214)
Q Consensus 156 ~L~i~ 160 (214)
.+.+.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 88874
No 73
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.11 E-value=12 Score=19.29 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=11.9
Q ss_pred CcccceEEccccCc
Q 028049 12 FSKLQVLRMLHCGY 25 (214)
Q Consensus 12 L~~Lq~L~l~~~~~ 25 (214)
|++|++|++.+++.
T Consensus 1 L~~L~~L~L~~NkI 14 (26)
T smart00365 1 LTNLEELDLSQNKI 14 (26)
T ss_pred CCccCEEECCCCcc
Confidence 57899999999887
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=42.74 E-value=2.9 Score=31.56 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=38.0
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW 147 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~ 147 (214)
.+...+|++ ++...++ ..-..++..+.|++.++++.+++.+. ..++.|+.|+++. +.+...|.
T Consensus 54 el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~----Aam~aLr~lNl~~-N~l~~~p~ 117 (177)
T KOG4579|consen 54 ELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL----AAMPALRSLNLRF-NPLNAEPR 117 (177)
T ss_pred eEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHH----hhhHHhhhccccc-CccccchH
Confidence 345556655 4455555 22234456777777777776666543 3578888888875 35555553
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.59 E-value=18 Score=18.68 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=11.7
Q ss_pred cccceEEccccCc
Q 028049 13 SKLQVLRMLHCGY 25 (214)
Q Consensus 13 ~~Lq~L~l~~~~~ 25 (214)
++|++|++.++.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 5799999999987
No 76
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=37.49 E-value=14 Score=19.14 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.2
Q ss_pred hhhccCcccceEEcccc
Q 028049 7 QLISSFSKLQVLRMLHC 23 (214)
Q Consensus 7 ~~i~~L~~Lq~L~l~~~ 23 (214)
.||..|++|+.||....
T Consensus 7 ~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 7 KVIRLLPQLRKLDXXXX 23 (26)
T ss_pred HHHHHCCccceeccccc
Confidence 47888999999987643
No 77
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=31.66 E-value=34 Score=29.68 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=66.0
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCCcchhccccEEeec
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKFPKLQTITQALHIE 86 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~~~l~~~l~~L~l~ 86 (214)
+.+-++|+++....++..+- .....-+-++..+.|+.+.+...++.. +..+..--...++++.|+|+
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~-----------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENG-----------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR 221 (382)
T ss_pred cCCCcceEEEEeeccccccc-----------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc
Confidence 45567888888888876221 112222335666777777665433211 10000000112456667665
Q ss_pred CCC--CC--Cchhhhcccccccchhhccccccceeeccc--ccccCCCCCccEEeeecCcCCccC------cccCCCCCc
Q 028049 87 DCN--SL--PLNLLHLANMEHLEKLFIEESNLEDWNVDC--AGEVQKMPKLHSVLIWNCSNVKDL------TWLVFAPNL 154 (214)
Q Consensus 87 ~c~--~l--~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~--~~~~~~~~~L~~L~I~~C~~L~~l------p~~~~l~~L 154 (214)
+-. .- .++...++.+++|+.|++.++.++.=.... ..-...+|+|+.+.+.+| .++.= -.....|.|
T Consensus 222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDL 300 (382)
T ss_pred cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhh
Confidence 521 00 011123455566777776664443211000 000123677777776664 33211 012235666
Q ss_pred cEEeEecCc
Q 028049 155 KCLRILDCD 163 (214)
Q Consensus 155 ~~L~i~~C~ 163 (214)
+.|.+.+|.
T Consensus 301 ~kLnLngN~ 309 (382)
T KOG1909|consen 301 EKLNLNGNR 309 (382)
T ss_pred HHhcCCccc
Confidence 777766653
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=24.96 E-value=48 Score=17.14 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=12.2
Q ss_pred cccceEEccccCccccc
Q 028049 13 SKLQVLRMLHCGYAHRS 29 (214)
Q Consensus 13 ~~Lq~L~l~~~~~~~~~ 29 (214)
++|+.|+.++++..++|
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 46788888888775544
Done!