Query 028049
Match_columns 214
No_of_seqs 144 out of 1759
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 08:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 4.7E-14 1.6E-18 118.4 11.2 169 2-209 94-295 (328)
2 4fcg_A Uncharacterized protein 99.5 5.7E-14 1.9E-18 117.9 10.5 177 11-209 79-271 (328)
3 2xwt_C Thyrotropin receptor; s 99.3 4E-12 1.4E-16 101.4 9.0 24 1-24 43-66 (239)
4 2o6q_A Variable lymphocyte rec 99.2 8.9E-11 3.1E-15 95.4 11.6 104 79-202 110-216 (270)
5 3zyj_A Leucine-rich repeat-con 99.2 9.4E-11 3.2E-15 101.7 11.6 182 4-209 79-272 (440)
6 3zyi_A Leucine-rich repeat-con 99.2 7.6E-11 2.6E-15 102.6 10.3 139 2-162 88-228 (452)
7 3zyj_A Leucine-rich repeat-con 99.2 9.6E-11 3.3E-15 101.6 10.8 177 2-202 101-290 (440)
8 2xwt_C Thyrotropin receptor; s 99.2 1.3E-10 4.4E-15 92.6 9.9 135 2-162 24-166 (239)
9 3o6n_A APL1; leucine-rich repe 99.2 1.4E-10 4.8E-15 98.8 10.4 67 97-168 243-310 (390)
10 3rfs_A Internalin B, repeat mo 99.2 3.2E-10 1.1E-14 92.3 11.8 155 9-202 59-216 (272)
11 2id5_A Lingo-1, leucine rich r 99.1 2.4E-10 8.2E-15 99.8 11.2 137 4-162 47-186 (477)
12 1ozn_A Reticulon 4 receptor; N 99.1 2E-10 7E-15 93.7 10.1 79 79-162 106-187 (285)
13 3zyi_A Leucine-rich repeat-con 99.1 1.6E-10 5.5E-15 100.6 9.8 137 2-162 67-206 (452)
14 2z81_A CD282 antigen, TOLL-lik 99.1 1.6E-10 5.6E-15 102.3 9.7 173 2-203 323-509 (549)
15 1h6t_A Internalin B; cell adhe 99.1 3.4E-10 1.2E-14 93.2 11.0 126 48-202 86-211 (291)
16 4ezg_A Putative uncharacterize 99.1 1.1E-10 3.7E-15 90.6 7.4 151 10-202 41-192 (197)
17 2o6q_A Variable lymphocyte rec 99.1 5.8E-10 2E-14 90.5 11.9 168 2-210 29-199 (270)
18 1h6u_A Internalin H; cell adhe 99.1 4.4E-10 1.5E-14 93.2 11.4 125 9-162 59-183 (308)
19 2id5_A Lingo-1, leucine rich r 99.1 3.6E-10 1.2E-14 98.6 11.3 154 3-162 70-234 (477)
20 4ay9_X Follicle-stimulating ho 99.1 2.6E-10 8.8E-15 96.2 9.8 184 1-208 42-240 (350)
21 3o53_A Protein LRIM1, AGAP0063 99.1 2.6E-10 8.8E-15 94.8 9.2 140 2-162 47-201 (317)
22 3rfs_A Internalin B, repeat mo 99.1 6.3E-10 2.1E-14 90.5 10.8 158 9-208 37-197 (272)
23 1h6u_A Internalin H; cell adhe 99.1 4.8E-10 1.6E-14 93.0 9.9 130 2-162 76-205 (308)
24 1m9s_A Internalin B; cell inva 99.1 5.9E-10 2E-14 100.9 11.0 153 2-202 56-208 (605)
25 4fmz_A Internalin; leucine ric 99.1 5.6E-10 1.9E-14 93.3 10.0 77 79-163 222-298 (347)
26 2ast_B S-phase kinase-associat 99.1 1.1E-10 3.6E-15 97.3 4.9 105 79-201 169-282 (336)
27 3oja_B Anopheles plasmodium-re 99.1 5.4E-10 1.8E-14 100.6 9.8 63 97-163 249-312 (597)
28 2z62_A TOLL-like receptor 4, v 99.0 5E-10 1.7E-14 91.0 8.5 24 2-25 41-64 (276)
29 3o6n_A APL1; leucine-rich repe 99.0 6.6E-10 2.3E-14 94.6 9.6 101 78-202 248-350 (390)
30 3m19_A Variable lymphocyte rec 99.0 1.6E-09 5.3E-14 87.1 10.6 161 2-202 27-190 (251)
31 1p9a_G Platelet glycoprotein I 99.0 1.3E-09 4.3E-14 89.8 10.2 21 2-25 23-43 (290)
32 2z80_A TOLL-like receptor 2, v 99.0 4.6E-10 1.6E-14 94.4 7.4 156 2-162 65-232 (353)
33 3oja_A Leucine-rich immune mol 99.0 8.3E-10 2.8E-14 97.3 9.2 181 2-204 47-250 (487)
34 1p9a_G Platelet glycoprotein I 99.0 1.2E-09 4.1E-14 89.9 9.4 145 9-162 6-158 (290)
35 1xku_A Decorin; proteoglycan, 99.0 1.6E-09 5.6E-14 90.1 10.3 181 2-208 65-256 (330)
36 1xku_A Decorin; proteoglycan, 99.0 3E-09 1E-13 88.5 11.8 142 3-168 135-278 (330)
37 3oja_B Anopheles plasmodium-re 99.0 1.2E-09 4.3E-14 98.3 9.6 101 78-202 254-356 (597)
38 4fmz_A Internalin; leucine ric 99.0 2.2E-09 7.7E-14 89.7 10.5 147 2-162 57-209 (347)
39 1ozn_A Reticulon 4 receptor; N 99.0 1.7E-09 5.7E-14 88.3 8.9 179 2-202 45-236 (285)
40 1ogq_A PGIP-2, polygalacturona 99.0 9.5E-10 3.2E-14 91.3 7.3 22 3-25 92-113 (313)
41 2z7x_B TOLL-like receptor 1, v 99.0 2.3E-09 7.9E-14 94.4 9.7 135 46-202 342-479 (520)
42 4ezg_A Putative uncharacterize 99.0 4.3E-09 1.5E-13 81.4 10.1 133 1-162 56-191 (197)
43 2z80_A TOLL-like receptor 2, v 99.0 1.7E-09 5.7E-14 91.0 8.3 140 1-163 43-185 (353)
44 2z66_A Variable lymphocyte rec 98.9 1.2E-09 4.2E-14 89.9 7.2 25 1-25 40-64 (306)
45 4ecn_A Leucine-rich repeat pro 98.9 1.8E-09 6E-14 101.5 9.0 151 4-163 440-606 (876)
46 2z66_A Variable lymphocyte rec 98.9 1E-09 3.6E-14 90.3 6.6 18 9-26 74-91 (306)
47 2ft3_A Biglycan; proteoglycan, 98.9 4.6E-09 1.6E-13 87.5 10.5 141 3-168 137-279 (332)
48 2ast_B S-phase kinase-associat 98.9 4E-10 1.4E-14 93.8 3.7 162 9-204 89-260 (336)
49 3rgz_A Protein brassinosteroid 98.9 3.7E-09 1.3E-13 97.9 10.0 136 9-163 96-234 (768)
50 1o6v_A Internalin A; bacterial 98.9 1.1E-08 3.8E-13 89.2 12.5 76 79-162 178-253 (466)
51 3m19_A Variable lymphocyte rec 98.9 3.7E-09 1.3E-13 84.9 8.7 140 2-163 48-190 (251)
52 1o6v_A Internalin A; bacterial 98.9 1.1E-08 3.7E-13 89.2 12.1 18 9-26 195-212 (466)
53 2ft3_A Biglycan; proteoglycan, 98.9 3.2E-09 1.1E-13 88.5 8.2 92 3-115 68-160 (332)
54 1xeu_A Internalin C; cellular 98.9 3.2E-09 1.1E-13 86.2 7.8 17 9-25 37-53 (263)
55 3v47_A TOLL-like receptor 5B a 98.9 1.3E-08 4.5E-13 88.0 12.0 22 4-25 70-91 (455)
56 4eco_A Uncharacterized protein 98.9 1.5E-09 5.2E-14 98.6 6.3 151 4-162 198-363 (636)
57 3vq2_A TLR4, TOLL-like recepto 98.9 7.2E-09 2.5E-13 92.9 10.4 34 129-163 285-318 (606)
58 1ogq_A PGIP-2, polygalacturona 98.9 2.5E-09 8.6E-14 88.8 6.9 22 3-25 116-137 (313)
59 1xeu_A Internalin C; cellular 98.9 1.1E-08 3.7E-13 83.0 9.7 131 1-163 53-183 (263)
60 3vq2_A TLR4, TOLL-like recepto 98.9 5.4E-09 1.8E-13 93.7 8.4 79 79-162 425-507 (606)
61 3t6q_A CD180 antigen; protein- 98.8 1.2E-08 4E-13 91.5 10.5 141 2-162 267-410 (606)
62 1m9s_A Internalin B; cell inva 98.8 4.8E-09 1.6E-13 94.9 7.6 147 9-201 39-185 (605)
63 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.6E-08 5.3E-13 90.2 10.7 156 10-202 350-508 (562)
64 1h6t_A Internalin B; cell adhe 98.8 1.7E-08 5.7E-13 83.0 9.7 147 2-163 59-211 (291)
65 3bz5_A Internalin-J, INLJ; leu 98.8 1.5E-08 5.2E-13 88.5 9.8 125 9-166 38-162 (457)
66 3bz5_A Internalin-J, INLJ; leu 98.8 4.6E-08 1.6E-12 85.5 12.7 126 2-162 55-180 (457)
67 2z62_A TOLL-like receptor 4, v 98.8 7.9E-09 2.7E-13 83.8 7.3 136 2-162 20-159 (276)
68 3t6q_A CD180 antigen; protein- 98.8 1.6E-08 5.4E-13 90.6 9.0 159 3-163 340-511 (606)
69 2z63_A TOLL-like receptor 4, v 98.8 9.2E-09 3.2E-13 91.2 7.4 105 78-202 421-529 (570)
70 4ecn_A Leucine-rich repeat pro 98.8 1E-08 3.5E-13 96.4 7.7 140 4-168 481-634 (876)
71 2z7x_B TOLL-like receptor 1, v 98.8 4.4E-08 1.5E-12 86.2 11.3 129 78-210 324-462 (520)
72 2z81_A CD282 antigen, TOLL-lik 98.8 1.4E-08 4.8E-13 89.9 8.1 140 1-163 17-159 (549)
73 3rgz_A Protein brassinosteroid 98.8 1.7E-08 5.7E-13 93.5 8.9 112 78-207 442-554 (768)
74 3e6j_A Variable lymphocyte rec 98.8 2E-08 6.9E-13 79.6 8.1 135 2-162 32-169 (229)
75 4glp_A Monocyte differentiatio 98.8 1.8E-08 6.1E-13 83.3 8.1 146 3-162 106-261 (310)
76 3o53_A Protein LRIM1, AGAP0063 98.8 2.2E-08 7.5E-13 83.1 8.6 168 9-202 76-248 (317)
77 1ziw_A TOLL-like receptor 3; i 98.8 4.7E-08 1.6E-12 88.8 11.4 81 79-161 481-569 (680)
78 4eco_A Uncharacterized protein 98.7 1.5E-08 5.2E-13 92.0 7.9 21 4-25 239-261 (636)
79 4ay9_X Follicle-stimulating ho 98.7 3.3E-08 1.1E-12 83.1 9.3 76 79-160 178-254 (350)
80 1wwl_A Monocyte differentiatio 98.7 1.3E-08 4.5E-13 84.3 6.4 143 3-162 110-263 (312)
81 3g06_A SSPH2 (leucine-rich rep 98.7 3E-08 1E-12 90.0 9.2 69 128-202 220-295 (622)
82 3v47_A TOLL-like receptor 5B a 98.7 4.3E-08 1.5E-12 84.7 9.5 24 2-25 43-66 (455)
83 1wwl_A Monocyte differentiatio 98.7 2.6E-08 8.8E-13 82.5 6.8 160 3-202 135-307 (312)
84 1dce_A Protein (RAB geranylger 98.7 5.4E-10 1.8E-14 100.4 -3.7 107 79-207 442-548 (567)
85 1jl5_A Outer protein YOPM; leu 98.7 6.6E-08 2.2E-12 84.4 9.4 75 78-162 131-205 (454)
86 2v9t_B SLIT homolog 2 protein 98.7 6.5E-08 2.2E-12 76.3 8.4 134 2-162 24-162 (220)
87 2z63_A TOLL-like receptor 4, v 98.7 3.6E-08 1.2E-12 87.4 7.5 112 79-209 397-511 (570)
88 1jl5_A Outer protein YOPM; leu 98.7 8.7E-08 3E-12 83.7 9.7 140 2-161 144-286 (454)
89 2o6s_A Variable lymphocyte rec 98.6 4.4E-08 1.5E-12 76.2 6.7 136 2-162 20-158 (208)
90 4glp_A Monocyte differentiatio 98.6 3.9E-08 1.3E-12 81.2 6.0 159 9-202 141-305 (310)
91 3oja_A Leucine-rich immune mol 98.6 9.1E-08 3.1E-12 84.2 8.5 144 9-162 76-224 (487)
92 1ziw_A TOLL-like receptor 3; i 98.6 1.2E-07 4.2E-12 86.0 9.5 26 1-26 85-110 (680)
93 3g06_A SSPH2 (leucine-rich rep 98.6 2.4E-07 8.3E-12 84.0 10.9 15 13-27 61-75 (622)
94 2o6s_A Variable lymphocyte rec 98.6 1.8E-07 6E-12 72.7 8.7 80 78-162 52-134 (208)
95 3j0a_A TOLL-like receptor 5; m 98.6 4.6E-07 1.6E-11 84.7 12.1 23 3-25 63-85 (844)
96 2ell_A Acidic leucine-rich nuc 98.5 1.5E-07 5E-12 70.7 6.8 61 98-162 67-130 (168)
97 2xot_A Amphoterin-induced prot 98.5 1.9E-07 6.4E-12 78.9 6.7 142 2-169 31-179 (361)
98 2ca6_A RAN GTPase-activating p 98.5 2.2E-08 7.4E-13 85.1 0.5 17 9-25 90-106 (386)
99 2je0_A Acidic leucine-rich nuc 98.5 7.6E-08 2.6E-12 70.8 3.1 61 97-162 59-123 (149)
100 4g8a_A TOLL-like receptor 4; l 98.4 2.9E-07 1E-11 82.1 7.3 136 2-162 44-183 (635)
101 4g8a_A TOLL-like receptor 4; l 98.4 4.7E-07 1.6E-11 80.8 7.8 106 78-202 469-578 (635)
102 1a9n_A U2A', U2A'; complex (nu 98.4 9.4E-08 3.2E-12 72.5 2.7 131 9-164 15-152 (176)
103 3e6j_A Variable lymphocyte rec 98.4 1E-06 3.6E-11 69.6 8.9 129 52-202 40-170 (229)
104 2ell_A Acidic leucine-rich nuc 98.4 2.1E-07 7.2E-12 69.8 4.4 133 10-164 21-159 (168)
105 3j0a_A TOLL-like receptor 5; m 98.4 4.9E-07 1.7E-11 84.5 7.3 136 2-162 17-158 (844)
106 2xot_A Amphoterin-induced prot 98.4 2E-07 7E-12 78.7 4.2 141 2-161 52-198 (361)
107 2ca6_A RAN GTPase-activating p 98.4 8.9E-08 3E-12 81.3 2.0 17 9-25 56-72 (386)
108 2v70_A SLIT-2, SLIT homolog 2 98.4 1.6E-06 5.6E-11 68.1 8.8 137 2-162 24-163 (220)
109 3cvr_A Invasion plasmid antige 98.4 9.4E-07 3.2E-11 79.4 8.3 156 2-202 72-241 (571)
110 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 1.4E-06 4.8E-11 77.5 9.3 137 4-163 369-508 (562)
111 2v9t_B SLIT homolog 2 protein 98.3 6.6E-07 2.3E-11 70.4 6.1 118 1-139 44-162 (220)
112 1ds9_A Outer arm dynein; leuci 98.3 2.2E-08 7.5E-13 77.5 -3.2 17 9-25 44-60 (198)
113 3ogk_B Coronatine-insensitive 98.3 5.2E-07 1.8E-11 80.4 5.1 136 8-163 288-447 (592)
114 1a9n_A U2A', U2A'; complex (nu 98.3 4.8E-07 1.6E-11 68.5 4.1 134 48-202 15-151 (176)
115 2p1m_B Transport inhibitor res 98.3 9E-08 3.1E-12 85.2 -0.2 100 4-111 57-165 (594)
116 2p1m_B Transport inhibitor res 98.3 1.2E-07 4.2E-12 84.4 0.4 136 9-164 101-247 (594)
117 2o6r_A Variable lymphocyte rec 98.2 5.4E-06 1.8E-10 62.5 8.7 80 78-162 52-134 (177)
118 3ogk_B Coronatine-insensitive 98.2 2.4E-07 8.1E-12 82.6 1.1 23 3-25 63-85 (592)
119 2je0_A Acidic leucine-rich nuc 98.2 1.5E-06 5E-11 63.8 5.0 108 78-207 17-128 (149)
120 2v70_A SLIT-2, SLIT homolog 2 98.2 2.4E-06 8.1E-11 67.2 6.1 114 5-139 49-163 (220)
121 2wfh_A SLIT homolog 2 protein 98.1 1.1E-05 3.6E-10 62.2 8.9 102 52-161 31-135 (193)
122 1z7x_W Ribonuclease inhibitor; 98.1 5.3E-07 1.8E-11 77.8 1.6 95 8-114 23-125 (461)
123 3cvr_A Invasion plasmid antige 98.1 9.4E-06 3.2E-10 72.9 9.0 121 9-168 50-175 (571)
124 4b8c_D Glucose-repressible alc 98.1 6.4E-06 2.2E-10 75.9 7.7 102 79-202 225-327 (727)
125 1dce_A Protein (RAB geranylger 98.0 5.7E-06 2E-10 74.2 5.1 118 14-158 442-566 (567)
126 2wfh_A SLIT homolog 2 protein 97.9 1.6E-05 5.4E-10 61.2 6.6 114 1-139 22-136 (193)
127 1w8a_A SLIT protein; signaling 97.9 2.8E-05 9.5E-10 59.6 7.9 104 53-162 30-136 (192)
128 3goz_A Leucine-rich repeat-con 97.9 1.8E-06 6.2E-11 72.7 1.1 96 8-115 17-122 (362)
129 3goz_A Leucine-rich repeat-con 97.9 5.2E-06 1.8E-10 69.9 3.6 13 13-25 80-92 (362)
130 3e4g_A ATP synthase subunit S, 97.9 2.5E-06 8.6E-11 65.1 1.2 88 79-167 62-154 (176)
131 4b8c_D Glucose-repressible alc 97.9 7.7E-06 2.6E-10 75.4 4.7 107 48-163 220-327 (727)
132 2o6r_A Variable lymphocyte rec 97.9 2.4E-05 8.3E-10 58.9 6.5 115 2-140 20-135 (177)
133 1w8a_A SLIT protein; signaling 97.8 2.2E-05 7.5E-10 60.2 5.7 115 1-139 20-136 (192)
134 2r9u_A Variable lymphocyte rec 97.8 7.7E-05 2.6E-09 56.4 8.3 80 78-162 33-115 (174)
135 3e4g_A ATP synthase subunit S, 97.8 2.5E-05 8.6E-10 59.6 5.1 64 79-145 86-155 (176)
136 3g39_A Variable lymphocyte rec 97.8 0.0001 3.5E-09 55.4 8.3 80 78-162 30-112 (170)
137 1z7x_W Ribonuclease inhibitor; 97.8 2.7E-06 9.1E-11 73.4 -0.7 82 79-162 314-408 (461)
138 1ds9_A Outer arm dynein; leuci 97.6 9.7E-07 3.3E-11 68.1 -5.3 135 9-163 14-151 (198)
139 2r9u_A Variable lymphocyte rec 97.5 0.00021 7.2E-09 53.9 6.4 82 52-139 33-115 (174)
140 2ra8_A Uncharacterized protein 97.5 4.8E-05 1.6E-09 64.5 2.9 169 9-202 135-318 (362)
141 2ifg_A High affinity nerve gro 97.4 0.00037 1.3E-08 57.8 8.1 81 78-162 31-113 (347)
142 3g39_A Variable lymphocyte rec 97.4 0.00034 1.2E-08 52.4 6.4 82 52-139 30-112 (170)
143 3sb4_A Hypothetical leucine ri 97.4 0.00052 1.8E-08 56.7 7.9 61 101-168 225-288 (329)
144 3sb4_A Hypothetical leucine ri 97.3 0.0015 5E-08 54.0 9.7 33 128-161 225-259 (329)
145 2ifg_A High affinity nerve gro 97.1 0.001 3.6E-08 55.1 7.2 85 48-139 27-113 (347)
146 3un9_A NLR family member X1; l 97.0 6.5E-05 2.2E-09 63.8 -1.3 135 12-162 71-221 (372)
147 3un9_A NLR family member X1; l 96.3 0.00028 9.7E-09 59.8 -2.4 136 12-163 100-250 (372)
148 4fdw_A Leucine rich hypothetic 96.1 0.055 1.9E-06 46.1 11.1 25 1-25 168-192 (401)
149 2ra8_A Uncharacterized protein 96.1 0.004 1.4E-07 52.6 3.8 135 8-163 167-318 (362)
150 4fdw_A Leucine rich hypothetic 95.7 0.073 2.5E-06 45.3 10.1 73 79-160 204-279 (401)
151 1io0_A Tropomodulin; LRR prote 95.5 0.003 1E-07 47.9 0.7 18 8-25 31-49 (185)
152 3rw6_A Nuclear RNA export fact 93.0 0.039 1.3E-06 44.5 2.0 15 11-25 168-182 (267)
153 3rw6_A Nuclear RNA export fact 92.2 0.041 1.4E-06 44.5 1.2 62 100-163 168-231 (267)
154 1io0_A Tropomodulin; LRR prote 89.9 0.23 7.8E-06 37.2 3.3 17 9-25 61-77 (185)
155 3rfe_A Platelet glycoprotein I 72.5 2.3 7.8E-05 29.9 2.6 41 3-61 24-64 (130)
156 4fs7_A Uncharacterized protein 67.1 29 0.001 28.5 8.8 21 3-23 152-172 (394)
157 3rfe_A Platelet glycoprotein I 62.4 4.5 0.00015 28.3 2.4 33 103-138 32-64 (130)
158 4fs7_A Uncharacterized protein 60.8 45 0.0015 27.4 8.8 10 198-207 384-393 (394)
159 4h09_A Hypothetical leucine ri 51.5 42 0.0014 27.2 7.0 19 3-21 59-77 (379)
160 4gt6_A Cell surface protein; l 37.8 96 0.0033 25.3 7.2 19 2-20 76-94 (394)
161 4gt6_A Cell surface protein; l 30.8 1.1E+02 0.0038 24.9 6.4 30 128-159 310-341 (394)
162 1pgv_A TMD-1, tropomodulin TMD 25.6 40 0.0014 25.4 2.5 91 9-111 37-135 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=4.7e-14 Score=118.40 Aligned_cols=169 Identities=21% Similarity=0.297 Sum_probs=89.2
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
+.||.+ +.++++|++|++.++.....|. .+..+++|+.|+++-.....++..+ .-.+.|+
T Consensus 94 ~~lp~~-l~~l~~L~~L~L~~n~l~~lp~----------------~~~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L~ 153 (328)
T 4fcg_A 94 PQFPDQ-AFRLSHLQHMTIDAAGLMELPD----------------TMQQFAGLETLTLARNPLRALPASI---ASLNRLR 153 (328)
T ss_dssp SSCCSC-GGGGTTCSEEEEESSCCCCCCS----------------CGGGGTTCSEEEEESCCCCCCCGGG---GGCTTCC
T ss_pred hhcChh-hhhCCCCCEEECCCCCccchhH----------------HHhccCCCCEEECCCCccccCcHHH---hcCcCCC
Confidence 467875 7778888888888887743321 2333444555554433322222110 0112344
Q ss_pred EEeecCCCCCCch--------------------------------hhhcccccccchhhccccccceeecccccccCCCC
Q 028049 82 ALHIEDCNSLPLN--------------------------------LLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMP 129 (214)
Q Consensus 82 ~L~l~~c~~l~~l--------------------------------~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~ 129 (214)
.|++++|.....+ +..+..+++|++|+++++.+..++... ..++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l----~~l~ 229 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI----HHLP 229 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG----GGCT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh----ccCC
Confidence 5555444433333 323344444444444443333332211 2355
Q ss_pred CccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccC
Q 028049 130 KLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV 208 (214)
Q Consensus 130 ~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~ 208 (214)
+|+.|++++|.....+|. +..+++|++|++++|.....++ ..+..+++|++|++++|+.+..++
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p---------------~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP---------------LDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC---------------TTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc---------------hhhhcCCCCCEEeCCCCCchhhcc
Confidence 566666666555555543 4455566666666655544443 245667888899998888777766
Q ss_pred C
Q 028049 209 H 209 (214)
Q Consensus 209 ~ 209 (214)
.
T Consensus 295 ~ 295 (328)
T 4fcg_A 295 S 295 (328)
T ss_dssp G
T ss_pred H
Confidence 4
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.51 E-value=5.7e-14 Score=117.89 Aligned_cols=177 Identities=19% Similarity=0.164 Sum_probs=113.9
Q ss_pred cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCC
Q 028049 11 SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNS 90 (214)
Q Consensus 11 ~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~ 90 (214)
...++++|++.++..... ..++..+++|+.|+++......++. .-.-.++|+.|+++++ .
T Consensus 79 ~~~~l~~L~L~~n~l~~l----------------p~~l~~l~~L~~L~L~~n~l~~lp~---~~~~l~~L~~L~Ls~n-~ 138 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQF----------------PDQAFRLSHLQHMTIDAAGLMELPD---TMQQFAGLETLTLARN-P 138 (328)
T ss_dssp TSTTCCEEEEESSCCSSC----------------CSCGGGGTTCSEEEEESSCCCCCCS---CGGGGTTCSEEEEESC-C
T ss_pred cccceeEEEccCCCchhc----------------ChhhhhCCCCCEEECCCCCccchhH---HHhccCCCCEEECCCC-c
Confidence 458999999999987332 1234557889999988655543332 1123467999999987 4
Q ss_pred CCchhhhcccccccchhhccc-cccceeecccc-----cccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCc
Q 028049 91 LPLNLLHLANMEHLEKLFIEE-SNLEDWNVDCA-----GEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCD 163 (214)
Q Consensus 91 l~~l~~~l~~l~~L~~L~i~~-~~l~~l~~~~~-----~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~ 163 (214)
+..++..+..+++|++|++++ +.+..++.... +....+++|+.|+++++ +++.+|. +..+++|++|+++++.
T Consensus 139 l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC
T ss_pred cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC
Confidence 456666788889999999988 55554443211 01123778888888876 6777764 6677888888887763
Q ss_pred cccccccccc-chhhHHH--------hhhcccCCCCCccCeeecCccccccccCC
Q 028049 164 DMEEIISVEN-FEKLIEV--------SEMMGELNLFSGLESLSLGNASNLKAYVH 209 (214)
Q Consensus 164 ~l~~i~~~~~-~~~l~~~--------~~~~~~~~~f~~L~~L~l~~cp~L~~i~~ 209 (214)
+..++..-. ...+..+ ..++..+..+++|++|++.+|+.+..++.
T Consensus 218 -l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 218 -LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp -CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred -CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 333322100 0011100 12234567789999999999987777664
No 3
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=4e-12 Score=101.44 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=19.8
Q ss_pred CCCCChhhhccCcccceEEccccC
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCG 24 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~ 24 (214)
++.||.+.+.++++|++|++.+++
T Consensus 43 l~~i~~~~~~~l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 43 LRTIPSHAFSNLPNISRIYVSIDV 66 (239)
T ss_dssp CSEECTTTTTTCTTCCEEEEECCS
T ss_pred ceEECHHHccCCCCCcEEeCCCCC
Confidence 356777778899999999999996
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.22 E-value=8.9e-11 Score=95.39 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=56.8
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK 155 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~ 155 (214)
.|+.|+++++ .+..++ ..+..+++|++|+++++.+..++... ...+++|+.|+++++ +++.++. +..+++|+
T Consensus 110 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 110 NLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV---FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELK 184 (270)
T ss_dssp SCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred CCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH---ccCCcccceeEecCC-cCcEeChhHhccCCCcC
Confidence 4566666553 223332 23455566666666665554443211 123566666666665 5555543 34456667
Q ss_pred EEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 156 ~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
+|+++++ .+..++. ..+..+++|+.|++.+.|
T Consensus 185 ~L~L~~N-~l~~~~~--------------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 185 TLKLDNN-QLKRVPE--------------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSS-CCSCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-cCCcCCH--------------HHhccccCCCEEEecCCC
Confidence 7766665 3433322 134567788888887765
No 5
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.20 E-value=9.4e-11 Score=101.68 Aligned_cols=182 Identities=15% Similarity=0.186 Sum_probs=86.6
Q ss_pred CChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEE
Q 028049 4 IPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQAL 83 (214)
Q Consensus 4 iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L 83 (214)
++.+.+.++++|++|++.++..... ..+.+..+++|+.|+++-.....++.- .+. -.+.|+.|
T Consensus 79 ~~~~~~~~l~~L~~L~Ls~n~i~~i---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~l~~L~~L 141 (440)
T 3zyj_A 79 IKVNSFKHLRHLEILQLSRNHIRTI---------------EIGAFNGLANLNTLELFDNRLTTIPNG-AFV-YLSKLKEL 141 (440)
T ss_dssp ECTTTTSSCSSCCEEECCSSCCCEE---------------CGGGGTTCSSCCEEECCSSCCSSCCTT-TSC-SCSSCCEE
T ss_pred eCHHHhhCCCCCCEEECCCCcCCcc---------------ChhhccCCccCCEEECCCCcCCeeCHh-Hhh-ccccCcee
Confidence 3434455566666666666554211 012234455555555543333222210 000 12345666
Q ss_pred eecCCCCCCchh-hhcccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049 84 HIEDCNSLPLNL-LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD 161 (214)
Q Consensus 84 ~l~~c~~l~~l~-~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~ 161 (214)
+++++ .+..++ ..+..+++|++|++.+ +.+..+.... ...+++|+.|++++| +++.+|.+..+++|++|++++
T Consensus 142 ~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 142 WLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA---FEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT---TTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTT
T ss_pred eCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcch---hhcccccCeecCCCC-cCccccccCCCcccCEEECCC
Confidence 66553 233333 2345555666666665 4444443211 124666777777665 566666656666777777766
Q ss_pred Ccccccccccc--cchhhHHH-------hhh-cccCCCCCccCeeecCccccccccCC
Q 028049 162 CDDMEEIISVE--NFEKLIEV-------SEM-MGELNLFSGLESLSLGNASNLKAYVH 209 (214)
Q Consensus 162 C~~l~~i~~~~--~~~~l~~~-------~~~-~~~~~~f~~L~~L~l~~cp~L~~i~~ 209 (214)
+ .+..+.... ....+..+ ..+ +..+..+++|+.|+++++ ++..++.
T Consensus 217 N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 272 (440)
T 3zyj_A 217 N-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH 272 (440)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred C-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccCh
Confidence 5 333332100 00001000 011 124556788888888775 4555544
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.19 E-value=7.6e-11 Score=102.59 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=69.8
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
+.++.+.+.++++|++|++.++...+.+ .+.+..+++|+.|+++-.....++.-. +. -.++|+
T Consensus 88 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---------------~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~-~l~~L~ 150 (452)
T 3zyi_A 88 QMIQADTFRHLHHLEVLQLGRNSIRQIE---------------VGAFNGLASLNTLELFDNWLTVIPSGA-FE-YLSKLR 150 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEEC---------------TTTTTTCTTCCEEECCSSCCSBCCTTT-SS-SCTTCC
T ss_pred ceECHHHcCCCCCCCEEECCCCccCCcC---------------hhhccCcccCCEEECCCCcCCccChhh-hc-ccCCCC
Confidence 4455556888999999999988763211 122444556666665543332222100 00 123456
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeE
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRI 159 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i 159 (214)
.|+++++ .+..++ ..+..+++|++|++.+ +.+..+.... ...+++|+.|+++++ +++.+|.+..+++|++|++
T Consensus 151 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 151 ELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA---FEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp EEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT---TTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEEC
T ss_pred EEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhh---ccCCCCCCEEECCCC-cccccccccccccccEEEC
Confidence 6666554 233333 2344555566666555 4444443211 123455555555554 4455554444555555555
Q ss_pred ecC
Q 028049 160 LDC 162 (214)
Q Consensus 160 ~~C 162 (214)
+++
T Consensus 226 s~N 228 (452)
T 3zyi_A 226 SGN 228 (452)
T ss_dssp TTS
T ss_pred cCC
Confidence 443
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.19 E-value=9.6e-11 Score=101.62 Aligned_cols=177 Identities=14% Similarity=0.178 Sum_probs=102.7
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..|+.+.+.++++|++|++.+++....+ .+.+..+++|+.|+++-.....++.. .+.. .+.|+
T Consensus 101 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~---------------~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~-l~~L~ 163 (440)
T 3zyj_A 101 RTIEIGAFNGLANLNTLELFDNRLTTIP---------------NGAFVYLSKLKELWLRNNPIESIPSY-AFNR-IPSLR 163 (440)
T ss_dssp CEECGGGGTTCSSCCEEECCSSCCSSCC---------------TTTSCSCSSCCEEECCSCCCCEECTT-TTTT-CTTCC
T ss_pred CccChhhccCCccCCEEECCCCcCCeeC---------------HhHhhccccCceeeCCCCcccccCHH-Hhhh-CcccC
Confidence 4567677999999999999999873321 12355667788887765444333321 0111 24678
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc--ccCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l~~L~~L~ 158 (214)
.|+++++..+..++ ..+..+++|++|++.++++..++. ...+++|+.|+++++ +++.++ .+..+++|++|+
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCC-ccCccChhhhccCccCCEEE
Confidence 88888877776665 356677788888887766655431 124666777777665 555553 244566666666
Q ss_pred EecCcccccccccc--cchhhHH-------Hhhhc-ccCCCCCccCeeecCccc
Q 028049 159 ILDCDDMEEIISVE--NFEKLIE-------VSEMM-GELNLFSGLESLSLGNAS 202 (214)
Q Consensus 159 i~~C~~l~~i~~~~--~~~~l~~-------~~~~~-~~~~~f~~L~~L~l~~cp 202 (214)
+.++. +..+.... ....+.. +..++ ..+..+++|+.|++.+.|
T Consensus 238 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 238 MIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 65542 22221100 0000000 00111 234568899999999877
No 8
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=1.3e-10 Score=92.65 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=72.9
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecc-cchhhhccCCcchhccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHG-SRGVENFLKFPKLQTIT 80 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~l 80 (214)
+.||. +. .+|++|++.+++..+.+ ...+..+++|+.++++... ...++.- .+. -.+.+
T Consensus 24 ~~ip~--~~--~~l~~L~l~~n~l~~i~---------------~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~-~l~~L 82 (239)
T 2xwt_C 24 QRIPS--LP--PSTQTLKLIETHLRTIP---------------SHAFSNLPNISRIYVSIDVTLQQLESH-SFY-NLSKV 82 (239)
T ss_dssp SSCCC--CC--TTCCEEEEESCCCSEEC---------------TTTTTTCTTCCEEEEECCSSCCEECTT-TEE-SCTTC
T ss_pred cccCC--CC--CcccEEEEeCCcceEEC---------------HHHccCCCCCcEEeCCCCCCcceeCHh-HcC-CCcCC
Confidence 45665 33 37888999888773321 1124456677777776443 3333310 001 12357
Q ss_pred cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCcc---EEeeecCcCCccCcc--cCCCCCc
Q 028049 81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLH---SVLIWNCSNVKDLTW--LVFAPNL 154 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~---~L~I~~C~~L~~lp~--~~~l~~L 154 (214)
+.|++++|..+..++ ..+..+++|++|++.++.+..++. . ..+++|+ .|+++++++++.++. +..+++|
T Consensus 83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~----~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-L----TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-C----TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-c----ccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 777777766666655 345566677777776644444332 1 1234444 666666555555543 3445556
Q ss_pred c-EEeEecC
Q 028049 155 K-CLRILDC 162 (214)
Q Consensus 155 ~-~L~i~~C 162 (214)
+ +|+++++
T Consensus 158 ~~~L~l~~n 166 (239)
T 2xwt_C 158 TLTLKLYNN 166 (239)
T ss_dssp EEEEECCSC
T ss_pred eeEEEcCCC
Confidence 5 6655543
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.16 E-value=1.4e-10 Score=98.80 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=41.8
Q ss_pred hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccc
Q 028049 97 HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEI 168 (214)
Q Consensus 97 ~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i 168 (214)
.+..+++|++|+++++.+..+.... ...+++|++|+++++ +++.+|. ...+++|++|+++++ .+..+
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGG---GTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCC
T ss_pred HHcCCCCccEEECCCCcCCCcChhH---ccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceec
Confidence 3455566777777665555443211 134778888888775 6666664 446788888888877 44444
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=3.2e-10 Score=92.26 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=81.9
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
+..+++|++|++.++...+ +..+..+++|+.|+++......+..-. + .-.+.++.|+++++
T Consensus 59 l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~L~~n~l~~~~~~~-~-~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-----------------ISALKELTNLTYLILTGNQLQSLPNGV-F-DKLTNLKELVLVEN 119 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-----------------CGGGTTCTTCCEEECTTSCCCCCCTTT-T-TTCTTCCEEECTTS
T ss_pred cccCCCCcEEECCCCCCCC-----------------chhhcCCCCCCEEECCCCccCccChhH-h-cCCcCCCEEECCCC
Confidence 5556666666666655411 123445556666665433322221100 0 11235666666665
Q ss_pred CCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEecCccc
Q 028049 89 NSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDM 165 (214)
Q Consensus 89 ~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l 165 (214)
. +..++ ..+..+++|++|+++++.+..++.... ..+++|+.|++++| +++.++. +..+++|++|+++++. +
T Consensus 120 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l 193 (272)
T 3rfs_A 120 Q-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF---DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-L 193 (272)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred c-CCccCHHHhccCCCCCEEECCCCccCccCHHHh---ccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-C
Confidence 3 33333 234556666777766655554432211 24667777777765 5666653 3456777777776652 3
Q ss_pred ccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 166 EEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 166 ~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
..++. ..+..+++|+.|++.+++
T Consensus 194 ~~~~~--------------~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KSVPD--------------GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred CccCH--------------HHHhCCcCCCEEEccCCC
Confidence 33322 134667889999988754
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.14 E-value=2.4e-10 Score=99.81 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=68.1
Q ss_pred CChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEE
Q 028049 4 IPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQAL 83 (214)
Q Consensus 4 iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L 83 (214)
++.+.+.++++|++|++.++...+. ..+.+..+++|+.|+++-.....++.-. +. -.++|+.|
T Consensus 47 ~~~~~~~~l~~L~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~-~l~~L~~L 109 (477)
T 2id5_A 47 LNQDEFASFPHLEELELNENIVSAV---------------EPGAFNNLFNLRTLGLRSNRLKLIPLGV-FT-GLSNLTKL 109 (477)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEE---------------CTTTTTTCTTCCEEECCSSCCCSCCTTS-ST-TCTTCCEE
T ss_pred ECHhHccCCCCCCEEECCCCccCEe---------------ChhhhhCCccCCEEECCCCcCCccCccc-cc-CCCCCCEE
Confidence 3333455556666666655544111 1123445566666666543333222100 01 12456667
Q ss_pred eecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEe
Q 028049 84 HIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRIL 160 (214)
Q Consensus 84 ~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~ 160 (214)
+++++. +..+. ..+..+++|++|++.++.+..+.... ...+++|+.|++.+| +++.++. +..+++|+.|++.
T Consensus 110 ~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 110 DISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRA---FSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTS---STTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEE
T ss_pred ECCCCc-cccCChhHccccccCCEEECCCCccceeChhh---ccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCC
Confidence 776653 22222 34556666777776665554443211 124566777777665 5555542 4456666666666
Q ss_pred cC
Q 028049 161 DC 162 (214)
Q Consensus 161 ~C 162 (214)
++
T Consensus 185 ~n 186 (477)
T 2id5_A 185 HL 186 (477)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.14 E-value=2e-10 Score=93.74 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=34.7
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK 155 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~ 155 (214)
.++.|+++++. +..+. ..+..+++|++|++.++.+..++... ...+++|+.|+++++ +++.++. +..+++|+
T Consensus 106 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 106 RLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDT---FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLD 180 (285)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhH---hccCCCccEEECCCC-cccccCHHHhcCccccC
Confidence 44555554432 22221 23344455555555544343332111 123455555555554 4444442 33455555
Q ss_pred EEeEecC
Q 028049 156 CLRILDC 162 (214)
Q Consensus 156 ~L~i~~C 162 (214)
+|+++++
T Consensus 181 ~L~l~~n 187 (285)
T 1ozn_A 181 RLLLHQN 187 (285)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 5555554
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.14 E-value=1.6e-10 Score=100.55 Aligned_cols=137 Identities=19% Similarity=0.231 Sum_probs=87.4
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..||.+ +. ++|++|++.++...+. ..+.+..+++|+.|+++-.....+..- .+.. .+.|+
T Consensus 67 ~~iP~~-~~--~~l~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~-l~~L~ 126 (452)
T 3zyi_A 67 SEVPQG-IP--SNTRYLNLMENNIQMI---------------QADTFRHLHHLEVLQLGRNSIRQIEVG-AFNG-LASLN 126 (452)
T ss_dssp SSCCSC-CC--TTCSEEECCSSCCCEE---------------CTTTTTTCTTCCEEECCSSCCCEECTT-TTTT-CTTCC
T ss_pred CccCCC-CC--CCccEEECcCCcCceE---------------CHHHcCCCCCCCEEECCCCccCCcChh-hccC-cccCC
Confidence 456664 32 5788888888876221 122355667788877764443333210 1111 24678
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~ 158 (214)
.|+++++ .+..++ ..+..+++|++|+++++.+..++... ...+++|+.|++.+|+.+..++. +..+++|++|+
T Consensus 127 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 127 TLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA---FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp EEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT---TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhH---HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 8888775 345554 34677788888888887676664321 13578888888888888888764 55678888888
Q ss_pred EecC
Q 028049 159 ILDC 162 (214)
Q Consensus 159 i~~C 162 (214)
++++
T Consensus 203 L~~n 206 (452)
T 3zyi_A 203 LGMC 206 (452)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8775
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.13 E-value=1.6e-10 Score=102.34 Aligned_cols=173 Identities=13% Similarity=0.076 Sum_probs=93.0
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
+.||..+..++++|++|++++++..+. .. .....+..+++|+.|+++-.....++.....-.-.+.++
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~-----------~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEE-----------YL-KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHH-----------HH-HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred ccCCHHHHhcCccccEEEccCCccccc-----------cc-cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 457776456788999999988877221 00 001224455666666665443333321000001123566
Q ss_pred EEeecCCCCCCchhhhcccccccchhhccccccceeecccc--------------cccCCCCCccEEeeecCcCCccCcc
Q 028049 82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCA--------------GEVQKMPKLHSVLIWNCSNVKDLTW 147 (214)
Q Consensus 82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~--------------~~~~~~~~L~~L~I~~C~~L~~lp~ 147 (214)
.|+++++ .+..++..+..+++|++|+++++.+..++.... +....+++|+.|+++++ +++.+|.
T Consensus 391 ~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~ 468 (549)
T 2z81_A 391 SLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD 468 (549)
T ss_dssp EEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred EEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC
Confidence 7777665 444444344555666666666644443321100 00023566666666665 5666665
Q ss_pred cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccc
Q 028049 148 LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASN 203 (214)
Q Consensus 148 ~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~ 203 (214)
...+++|++|+++++ .+..++. ..+..+++|+.|++.++|-
T Consensus 469 ~~~l~~L~~L~Ls~N-~l~~~~~--------------~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 469 ASLFPVLLVMKISRN-QLKSVPD--------------GIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCT--------------TGGGGCTTCCEEECCSSCB
T ss_pred cccCccCCEEecCCC-ccCCcCH--------------HHHhcCcccCEEEecCCCc
Confidence 455666777776664 3443322 1355678899999988774
No 15
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=3.4e-10 Score=93.19 Aligned_cols=126 Identities=16% Similarity=0.247 Sum_probs=69.9
Q ss_pred ccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCC
Q 028049 48 IHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK 127 (214)
Q Consensus 48 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~ 127 (214)
+..+++|+.|+++......++.+.. .++++.|+++++ .+..+ ..+..+++|+.|+++++.+..+. . ...
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~l~~n~l~~~~-~----l~~ 154 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSSLKD----LKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNKITDIT-V----LSR 154 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGGGTT----CTTCCEEECTTS-CCCCC-GGGGGCTTCCEEECCSSCCCCCG-G----GGG
T ss_pred cccCCCCCEEECCCCcCCCChhhcc----CCCCCEEECCCC-cCCCC-hhhcCCCCCCEEEccCCcCCcch-h----hcc
Confidence 4455666666665444433333222 235666777665 33333 24555666777776665554431 1 124
Q ss_pred CCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 128 MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 128 ~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
+++|+.|++++| +++.++.+..+++|++|+++++ .+..+. .+..+++|+.|++.+++
T Consensus 155 l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N-~i~~l~----------------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 155 LTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISDLR----------------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCBCG----------------GGTTCTTCSEEEEEEEE
T ss_pred CCCCCEEEccCC-ccccchhhcCCCccCEEECCCC-cCCCCh----------------hhccCCCCCEEECcCCc
Confidence 667777777765 5666655566677777777665 333221 23456777777777653
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.12 E-value=1.1e-10 Score=90.59 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=106.6
Q ss_pred ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049 10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN 89 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~ 89 (214)
..+++|++|++.++..... ..+..+++|+.|+++-.....++.+.. .+.++.|+++++.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-----------------~~l~~l~~L~~L~l~~n~~~~~~~l~~----l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-----------------TGIEYAHNIKDLTINNIHATNYNPISG----LSNLERLRIMGKD 99 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-----------------TTGGGCTTCSEEEEESCCCSCCGGGTT----CTTCCEEEEECTT
T ss_pred hhcCCccEEeccCCCccCh-----------------HHHhcCCCCCEEEccCCCCCcchhhhc----CCCCCEEEeECCc
Confidence 5788999999999987321 135667888999887555444443322 3578999999864
Q ss_pred CCCc-hhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccc
Q 028049 90 SLPL-NLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEI 168 (214)
Q Consensus 90 ~l~~-l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i 168 (214)
+.. .+..+..+++|++|+++++.+....... ...+++|+.|++++|..+..+|.+..+++|++|++++|. +..+
T Consensus 100 -l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~ 174 (197)
T 4ezg_A 100 -VTSDKIPNLSGLTSLTLLDISHSAHDDSILTK---INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDY 174 (197)
T ss_dssp -CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH---HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCC
T ss_pred -cCcccChhhcCCCCCCEEEecCCccCcHhHHH---HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcCh
Confidence 333 2245778889999999986665422111 135899999999999778888887889999999998873 3332
Q ss_pred cccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 169 ISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
. .+..+++|+.|++.+-+
T Consensus 175 ~----------------~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 R----------------GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp T----------------TGGGCSSCCEEEECBC-
T ss_pred H----------------HhccCCCCCEEEeeCcc
Confidence 1 34467889999987643
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.12 E-value=5.8e-10 Score=90.52 Aligned_cols=168 Identities=19% Similarity=0.242 Sum_probs=111.6
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..||.+ +. ++|++|++.+++.... ....+..+++|+.|+++-.....++.-. + .-.+.++
T Consensus 29 ~~ip~~-~~--~~l~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~i~~~~-~-~~l~~L~ 88 (270)
T 2o6q_A 29 TAIPSN-IP--ADTKKLDLQSNKLSSL---------------PSKAFHRLTKLRLLYLNDNKLQTLPAGI-F-KELKNLE 88 (270)
T ss_dssp SSCCSC-CC--TTCSEEECCSSCCSCC---------------CTTSSSSCTTCCEEECCSSCCSCCCTTT-T-SSCTTCC
T ss_pred CccCCC-CC--CCCCEEECcCCCCCee---------------CHHHhcCCCCCCEEECCCCccCeeChhh-h-cCCCCCC
Confidence 456664 32 5788999988877322 1123566788888888654443333110 1 1135789
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~ 158 (214)
.|+++++ .+..++ ..+..+++|++|++.++.+..+.... ...+++|+.|+++++ +++.+|. +..+++|++|+
T Consensus 89 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 89 TLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV---FDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp EEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHH---hCcCcCCCEEECCCC-cCCccCHhHccCCcccceeE
Confidence 9999876 345554 45677889999999987776664322 135899999999987 7888874 56789999999
Q ss_pred EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccCCC
Q 028049 159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHR 210 (214)
Q Consensus 159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~~~ 210 (214)
++++ .+..+.. ..+..+++|++|+++++ +++.++..
T Consensus 164 L~~n-~l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~ 199 (270)
T 2o6q_A 164 LYNN-QLKRVPE--------------GAFDKLTELKTLKLDNN-QLKRVPEG 199 (270)
T ss_dssp CCSS-CCSCCCT--------------TTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ecCC-cCcEeCh--------------hHhccCCCcCEEECCCC-cCCcCCHH
Confidence 9887 3443322 13556789999999887 46665543
No 18
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.12 E-value=4.4e-10 Score=93.21 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=74.3
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
+..+++|++|++++|...+. ..+..+++|+.|+++......++.+.. .+.++.|+++++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~-----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~----l~~L~~L~l~~n 117 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDL-----------------APLKNLTKITELELSGNPLKNVSAIAG----LQSIKTLDLTST 117 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCC-----------------GGGTTCCSCCEEECCSCCCSCCGGGTT----CTTCCEEECTTS
T ss_pred hhccCCCCEEEccCCcCCCC-----------------hhHccCCCCCEEEccCCcCCCchhhcC----CCCCCEEECCCC
Confidence 66677777777777765221 114556667777766444444433222 245677777765
Q ss_pred CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecC
Q 028049 89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDC 162 (214)
Q Consensus 89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C 162 (214)
. +..++ .+..+++|++|+++++.+..+.. ...+++|+.|++++| +++.++.+..+++|+.|+++++
T Consensus 118 ~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 118 Q-ITDVT-PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN 183 (308)
T ss_dssp C-CCCCG-GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred C-CCCch-hhcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCC
Confidence 3 34442 35666777777777655544422 124677777777776 6666665666777777777665
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.12 E-value=3.6e-10 Score=98.65 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=78.3
Q ss_pred CCChhhhccCcccceEEccccCcccccccc-cc-cc-----cchhh--HhhhhhccCCccCceeeEEecccchhhhccCC
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVE-EG-KV-----LSADA--ESLMKEIHCLEQLNLITLSLHGSRGVENFLKF 73 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~-~~-~~-----~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~ 73 (214)
.++.+.+.++++|++|++.+++....+... .. .. +.... ......+..+++|+.|++.......+..- .+
T Consensus 70 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~ 148 (477)
T 2id5_A 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-AF 148 (477)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-SS
T ss_pred EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-hc
Confidence 344445777888888888877664332110 00 00 00000 00011234455666666553332222100 01
Q ss_pred cchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCC
Q 028049 74 PKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFA 151 (214)
Q Consensus 74 ~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l 151 (214)
.. .+.|+.|+++++ .+..++ ..+..+++|+.|++.++.+..+.... ...+++|+.|++++|+.+..+|. ....
T Consensus 149 ~~-l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 149 SG-LNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS---FKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp TT-CTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC---SCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred cC-CCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhh---cccCcccceeeCCCCccccccCcccccC
Confidence 11 235677777665 334443 34566677777777765555443211 13467788888887777776653 3344
Q ss_pred CCccEEeEecC
Q 028049 152 PNLKCLRILDC 162 (214)
Q Consensus 152 ~~L~~L~i~~C 162 (214)
.+|++|++++|
T Consensus 224 ~~L~~L~l~~n 234 (477)
T 2id5_A 224 LNLTSLSITHC 234 (477)
T ss_dssp CCCSEEEEESS
T ss_pred ccccEEECcCC
Confidence 57777777765
No 20
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=2.6e-10 Score=96.18 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=107.8
Q ss_pred CCCCChhhhccCcccceEEccccCcccc-ccc-cccc-c------cchhhHh--hhhhccCCccCceeeEEecccchhhh
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHR-SIV-EEGK-V------LSADAES--LMKEIHCLEQLNLITLSLHGSRGVEN 69 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~-~~~-~~~~-~------~~~~~~~--~l~eL~~L~~L~~L~i~~~~~~~l~~ 69 (214)
+++||.+++++|++|++|++++++..+. +.+ +... . .....-. ..+.+..+++|+.+++.-.....++.
T Consensus 42 i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 42 LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence 4678888889999999999999976321 110 0100 0 0000000 11235667788888887655444433
Q ss_pred ccCCcchhccccEEeecCCCCCCchh-hhccccc-ccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc
Q 028049 70 FLKFPKLQTITQALHIEDCNSLPLNL-LHLANME-HLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW 147 (214)
Q Consensus 70 l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~-~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~ 147 (214)
...... ..+..+++.++..+..++ ..+..+. .++.|+++++.++.++... ....+|+++.+.+++.++.+|.
T Consensus 122 ~~~~~~--~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 122 VHKIHS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----FNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp CTTCCB--SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----STTEEEEEEECTTCTTCCCCCT
T ss_pred hhhccc--chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----ccccchhHHhhccCCcccCCCH
Confidence 221111 235567777777776665 3344443 5777888777777765322 1345788888888888888874
Q ss_pred --cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccC
Q 028049 148 --LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV 208 (214)
Q Consensus 148 --~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~ 208 (214)
...+++|++|++++. +++.++. ..|.+|+.|.+.++.+|+.++
T Consensus 196 ~~f~~l~~L~~LdLs~N-~l~~lp~-----------------~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 196 DVFHGASGPVILDISRT-RIHSLPS-----------------YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TTTTTEECCSEEECTTS-CCCCCCS-----------------SSCTTCCEEECTTCTTCCCCC
T ss_pred HHhccCcccchhhcCCC-CcCccCh-----------------hhhccchHhhhccCCCcCcCC
Confidence 456788888888775 4555532 224455555555555555544
No 21
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.10 E-value=2.6e-10 Score=94.83 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=74.1
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCc-------
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFP------- 74 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~------- 74 (214)
..++.+.+.++++|++|++.+|...+.+ .+..+++|+.|+++......++......
T Consensus 47 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 47 SQISAADLAPFTKLELLNLSSNVLYETL-----------------DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp CCCCHHHHTTCTTCCEEECTTSCCEEEE-----------------EETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred CcCCHHHhhCCCcCCEEECCCCcCCcch-----------------hhhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 3455445777777777777777652210 1344455555554432222211110000
Q ss_pred -------chhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc
Q 028049 75 -------KLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT 146 (214)
Q Consensus 75 -------~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp 146 (214)
...+.++.|+++++ .+..++ ..+..+++|++|+++++.+..+..... ...+++|+.|+++++ +++.++
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~ 185 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--AASSDTLEHLNLQYN-FIYDVK 185 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG--GGGTTTCCEEECTTS-CCCEEE
T ss_pred ccCCcCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHH--hhccCcCCEEECCCC-cCcccc
Confidence 00134566666554 233332 244556777777777765555432211 123677788888776 566666
Q ss_pred ccCCCCCccEEeEecC
Q 028049 147 WLVFAPNLKCLRILDC 162 (214)
Q Consensus 147 ~~~~l~~L~~L~i~~C 162 (214)
....+++|++|+++++
T Consensus 186 ~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 186 GQVVFAKLKTLDLSSN 201 (317)
T ss_dssp CCCCCTTCCEEECCSS
T ss_pred cccccccCCEEECCCC
Confidence 5555777788777765
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.09 E-value=6.3e-10 Score=90.50 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=111.8
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
...+++|+.|++.++.... +..+..+++|+.|+++-.....++.+.. .+.++.|+++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~~L~L~~n 95 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-----------------VQGIQYLPNVRYLALGGNKLHDISALKE----LTNLTYLILTGN 95 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-----------------CTTGGGCTTCCEEECTTSCCCCCGGGTT----CTTCCEEECTTS
T ss_pred cccccceeeeeeCCCCccc-----------------ccccccCCCCcEEECCCCCCCCchhhcC----CCCCCEEECCCC
Confidence 4578899999999998732 2235667888888877555444443322 247899999987
Q ss_pred CCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEecCccc
Q 028049 89 NSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDM 165 (214)
Q Consensus 89 ~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l 165 (214)
.+..++ ..+..+++|++|++.++.+..++... ...+++|+.|++++| +++.++. +..+++|++|++++| ++
T Consensus 96 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l 169 (272)
T 3rfs_A 96 -QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV---FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QL 169 (272)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred -ccCccChhHhcCCcCCCEEECCCCcCCccCHHH---hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-Cc
Confidence 455554 34678899999999997777664322 135889999999998 7888875 567899999999998 34
Q ss_pred ccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccC
Q 028049 166 EEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV 208 (214)
Q Consensus 166 ~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~ 208 (214)
..++. ..+..+++|++|++.++. +..+.
T Consensus 170 ~~~~~--------------~~~~~l~~L~~L~L~~N~-l~~~~ 197 (272)
T 3rfs_A 170 QSLPE--------------GVFDKLTQLKDLRLYQNQ-LKSVP 197 (272)
T ss_dssp CCCCT--------------TTTTTCTTCCEEECCSSC-CSCCC
T ss_pred CccCH--------------HHhcCCccCCEEECCCCc-CCccC
Confidence 44432 134667889999988763 44444
No 23
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.08 E-value=4.8e-10 Score=93.02 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=83.8
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..+|. +.++++|++|++++++..+. ..+..+++|+.|+++......++.+.. .++++
T Consensus 76 ~~~~~--~~~l~~L~~L~L~~n~l~~~-----------------~~~~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~ 132 (308)
T 1h6u_A 76 TDLAP--LKNLTKITELELSGNPLKNV-----------------SAIAGLQSIKTLDLTSTQITDVTPLAG----LSNLQ 132 (308)
T ss_dssp CCCGG--GTTCCSCCEEECCSCCCSCC-----------------GGGTTCTTCCEEECTTSCCCCCGGGTT----CTTCC
T ss_pred CCChh--HccCCCCCEEEccCCcCCCc-----------------hhhcCCCCCCEEECCCCCCCCchhhcC----CCCCC
Confidence 45565 88999999999999987321 235566777777776544444433221 24677
Q ss_pred EEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049 82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD 161 (214)
Q Consensus 82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~ 161 (214)
.|+++++ .+..++ .+..+++|+.|+++++.+..+.. ...+++|+.|+++++ +++.++.+..+++|++|++++
T Consensus 133 ~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 133 VLYLDLN-QITNIS-PLAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKN 204 (308)
T ss_dssp EEECCSS-CCCCCG-GGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTT
T ss_pred EEECCCC-ccCcCc-cccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccC
Confidence 7888775 334442 35666777788777755554432 134677777777775 666666566677777777777
Q ss_pred C
Q 028049 162 C 162 (214)
Q Consensus 162 C 162 (214)
+
T Consensus 205 N 205 (308)
T 1h6u_A 205 N 205 (308)
T ss_dssp S
T ss_pred C
Confidence 5
No 24
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=5.9e-10 Score=100.89 Aligned_cols=153 Identities=15% Similarity=0.215 Sum_probs=94.0
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..+|. +..+++|++|++.+|+..+. ..+..+++|+.|+++-..+..++.+.. .++|+
T Consensus 56 ~~l~~--l~~l~~L~~L~Ls~N~l~~~-----------------~~l~~l~~L~~L~Ls~N~l~~l~~l~~----l~~L~ 112 (605)
T 1m9s_A 56 KSVQG--IQYLPNVTKLFLNGNKLTDI-----------------KPLTNLKNLGWLFLDENKIKDLSSLKD----LKKLK 112 (605)
T ss_dssp CCCTT--GGGCTTCCEEECTTSCCCCC-----------------GGGGGCTTCCEEECCSSCCCCCTTSTT----CTTCC
T ss_pred CCChH--HccCCCCCEEEeeCCCCCCC-----------------hhhccCCCCCEEECcCCCCCCChhhcc----CCCCC
Confidence 34553 67777777777777766321 114556677777766554444433322 24677
Q ss_pred EEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049 82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD 161 (214)
Q Consensus 82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~ 161 (214)
.|+|+++. +..+ ..+..+++|+.|+++++.+..+. . ...+++|+.|++++| ++..++.+..+++|+.|++++
T Consensus 113 ~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~l~-~----l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 113 SLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDIT-V----LSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp EEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCCCG-G----GGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCS
T ss_pred EEEecCCC-CCCC-ccccCCCccCEEECCCCccCCch-h----hcccCCCCEEECcCC-cCCCchhhccCCCCCEEECcC
Confidence 78887753 3444 24666777888887775555541 1 135778888888776 666665566778888888877
Q ss_pred CcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 162 CDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 162 C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
| .+..+. .+..+++|+.|++.+++
T Consensus 185 N-~i~~l~----------------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 185 N-HISDLR----------------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp S-CCCBCG----------------GGTTCTTCSEEECCSEE
T ss_pred C-CCCCCh----------------HHccCCCCCEEEccCCc
Confidence 6 333321 33456777777777654
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.07 E-value=5.6e-10 Score=93.35 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=44.2
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR 158 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~ 158 (214)
.++.|++++|. +..++ .+..+++|++|++.++.+..+.. ...+++|+.|++++| +++.++.+..+++|++|+
T Consensus 222 ~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 222 RLNSLKIGNNK-ITDLS-PLANLSQLTWLEIGTNQISDINA-----VKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLF 293 (347)
T ss_dssp TCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEE
T ss_pred cCCEEEccCCc-cCCCc-chhcCCCCCEEECCCCccCCChh-----HhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEE
Confidence 45666666652 23332 24555666666666644443311 124667777777766 566666556667777777
Q ss_pred EecCc
Q 028049 159 ILDCD 163 (214)
Q Consensus 159 i~~C~ 163 (214)
+++|.
T Consensus 294 L~~n~ 298 (347)
T 4fmz_A 294 LNNNQ 298 (347)
T ss_dssp CCSSC
T ss_pred CcCCc
Confidence 77763
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.05 E-value=1.1e-10 Score=97.28 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=53.9
Q ss_pred cccEEeecCCCCCCc--hhhhccccc-ccchhhcccc--ccc--eeecccccccCCCCCccEEeeecCcCCcc--CcccC
Q 028049 79 ITQALHIEDCNSLPL--NLLHLANME-HLEKLFIEES--NLE--DWNVDCAGEVQKMPKLHSVLIWNCSNVKD--LTWLV 149 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~--l~~~l~~l~-~L~~L~i~~~--~l~--~l~~~~~~~~~~~~~L~~L~I~~C~~L~~--lp~~~ 149 (214)
+++.|++++|..+.. ++..+..++ +|++|++.++ .+. .++.. ...+++|+.|++++|..+.. ++.+.
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL----VRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH----HHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH----HhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 455666665544443 222344455 5666666552 222 11100 12366777777777654443 22345
Q ss_pred CCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049 150 FAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNA 201 (214)
Q Consensus 150 ~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c 201 (214)
.+++|++|++++|..+.... -..+..+++|+.|++.+|
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~--------------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPET--------------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGG--------------GGGGGGCTTCCEEECTTS
T ss_pred CCCCCCEeeCCCCCCCCHHH--------------HHHHhcCCCCCEEeccCc
Confidence 56777777777775221110 013345778888888777
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.05 E-value=5.4e-10 Score=100.65 Aligned_cols=63 Identities=24% Similarity=0.180 Sum_probs=39.6
Q ss_pred hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCc
Q 028049 97 HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCD 163 (214)
Q Consensus 97 ~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~ 163 (214)
.+..+++|+.|+++++.+..+..... ..+++|+.|+++++ ++..+|. ...+|+|+.|++++|.
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHh---cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC
Confidence 34556667777776655555432211 24777888888775 6666664 4457788888887763
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.05 E-value=5e-10 Score=91.00 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.1
Q ss_pred CCCChhhhccCcccceEEccccCc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
+.+|...+.++++|++|++.++..
T Consensus 41 ~~~~~~~~~~l~~L~~L~l~~n~l 64 (276)
T 2z62_A 41 RHLGSYSFFSFPELQVLDLSRCEI 64 (276)
T ss_dssp CEECTTTTTTCTTCSEEECTTCCC
T ss_pred cccCHhHhccccCCcEEECCCCcC
Confidence 455665688899999999999876
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.05 E-value=6.6e-10 Score=94.65 Aligned_cols=101 Identities=17% Similarity=0.209 Sum_probs=74.3
Q ss_pred ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCcc
Q 028049 78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLK 155 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~ 155 (214)
+.++.|+++++. +..+. ..+..+++|++|++.++.+..++... ..+++|+.|++++| +++.+|. +..+++|+
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 248 PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG----QPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 321 (390)
T ss_dssp TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSS----SCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred CCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCccc----CCCCCCCEEECCCC-cceecCccccccCcCC
Confidence 457777777753 33332 45778899999999998787765332 35899999999998 7888874 56689999
Q ss_pred EEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 156 ~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
+|+++++. +..+ .+..+++|+.|++.+.|
T Consensus 322 ~L~L~~N~-i~~~-----------------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 322 NLYLDHNS-IVTL-----------------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSC-CCCC-----------------CCCTTCCCSEEECCSSC
T ss_pred EEECCCCc-ccee-----------------CchhhccCCEEEcCCCC
Confidence 99999874 3322 34567888888888764
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.03 E-value=1.6e-09 Score=87.06 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=100.6
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
+.||.+ +. ++|++|++.+++..+.+ ...+..+++|+.|+++-.....+..- .+. -.+.|+
T Consensus 27 ~~~p~~-~~--~~l~~L~L~~n~l~~~~---------------~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~l~~L~ 86 (251)
T 3m19_A 27 DSVPSG-IP--ADTEKLDLQSTGLATLS---------------DATFRGLTKLTWLNLDYNQLQTLSAG-VFD-DLTELG 86 (251)
T ss_dssp SSCCSC-CC--TTCCEEECTTSCCCCCC---------------TTTTTTCTTCCEEECTTSCCCCCCTT-TTT-TCTTCC
T ss_pred cccCCC-CC--CCCCEEEccCCCcCccC---------------HhHhcCcccCCEEECCCCcCCccCHh-Hhc-cCCcCC
Confidence 456654 33 57888888888763221 12345667777777764433322210 011 124688
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~ 158 (214)
.|+++++ .+..++ ..+..+++|++|+++++.+..++.... ..+++|+.|+++++ +++.++. +..+++|++|+
T Consensus 87 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 87 TLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEE
Confidence 8888775 344444 446677888888888877766543221 34788888888876 7777764 55678888888
Q ss_pred EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
++++ .+..++. ..+..+++|+.|++.+.+
T Consensus 162 L~~N-~l~~~~~--------------~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 162 LSTN-QLQSVPH--------------GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSS-CCSCCCT--------------TTTTTCTTCCEEECCSCC
T ss_pred CCCC-cCCccCH--------------HHHhCCCCCCEEEeeCCc
Confidence 8876 3443332 145567888888888765
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.03 E-value=1.3e-09 Score=89.81 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=12.1
Q ss_pred CCCChhhhccCcccceEEccccCc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
+.||.+ +. +++++|++.++..
T Consensus 23 ~~ip~~-~~--~~l~~L~L~~N~l 43 (290)
T 1p9a_G 23 TALPPD-LP--KDTTILHLSENLL 43 (290)
T ss_dssp SSCCSC-CC--TTCCEEECTTSCC
T ss_pred CcCCCC-CC--CCCCEEEcCCCcC
Confidence 445554 22 4666677766665
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.02 E-value=4.6e-10 Score=94.44 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=70.4
Q ss_pred CCCChhhhccCcccceEEccccCcccccc-cccc-cc-----cchhh--HhhhhhccCCccCceeeEEecccchhhhccC
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSI-VEEG-KV-----LSADA--ESLMKEIHCLEQLNLITLSLHGSRGVENFLK 72 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~-~~~~-~~-----~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~ 72 (214)
+.+|.+.+.++++|++|++.+++..+.+. .+.. .. +.... ....+.+..+++|+.|+++......++....
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 144 (353)
T 2z80_A 65 TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144 (353)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCS
T ss_pred cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhh
Confidence 45666567888888888888886632210 0000 00 00000 0000113344455555544322222221000
Q ss_pred CcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cC
Q 028049 73 FPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LV 149 (214)
Q Consensus 73 ~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~ 149 (214)
+. -.++++.|+++++..+..++ ..+..+++|++|++.++.+..+.... ...+++|++|+++++ ++..+|. ..
T Consensus 145 ~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n-~l~~~~~~~~~ 219 (353)
T 2z80_A 145 FS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS---LKSIQNVSHLILHMK-QHILLLEIFVD 219 (353)
T ss_dssp CT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT---TTTCSEEEEEEEECS-CSTTHHHHHHH
T ss_pred hc-cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH---HhccccCCeecCCCC-ccccchhhhhh
Confidence 11 12345666666654444433 33455566666666554444332111 123556666666654 3444442 22
Q ss_pred CCCCccEEeEecC
Q 028049 150 FAPNLKCLRILDC 162 (214)
Q Consensus 150 ~l~~L~~L~i~~C 162 (214)
.+++|++|+++++
T Consensus 220 ~~~~L~~L~L~~n 232 (353)
T 2z80_A 220 VTSSVECLELRDT 232 (353)
T ss_dssp HTTTEEEEEEESC
T ss_pred hcccccEEECCCC
Confidence 3566666666665
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.01 E-value=8.3e-10 Score=97.30 Aligned_cols=181 Identities=12% Similarity=0.071 Sum_probs=96.1
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCc-------
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFP------- 74 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~------- 74 (214)
..+|++.++++++|++|++++|...+.+ .+..+++|+.|+++......++......
T Consensus 47 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 47 SQISAADLAPFTKLELLNLSSNVLYETL-----------------DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (487)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCEEEE-----------------ECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred CCCCHHHHhCCCCCCEEEeeCCCCCCCc-----------------ccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence 3455445777777777777777662210 1444555555555433222221110000
Q ss_pred -------chhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc
Q 028049 75 -------KLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT 146 (214)
Q Consensus 75 -------~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp 146 (214)
...+.++.|+++++. +..+. ..+..+++|+.|+++++.+..+..... ...+++|+.|+++++ ++..++
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~l~~L~~L~Ls~N-~l~~~~ 185 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--AASSDTLEHLNLQYN-FIYDVK 185 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG--GGGTTTCCEEECTTS-CCCEEE
T ss_pred cCCCCCccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHH--hhhCCcccEEecCCC-cccccc
Confidence 001346667776653 33332 345667788888888766665432211 124678888888876 577776
Q ss_pred ccCCCCCccEEeEecCccccccccccc-chhhHH-------HhhhcccCCCCCccCeeecCccccc
Q 028049 147 WLVFAPNLKCLRILDCDDMEEIISVEN-FEKLIE-------VSEMMGELNLFSGLESLSLGNASNL 204 (214)
Q Consensus 147 ~~~~l~~L~~L~i~~C~~l~~i~~~~~-~~~l~~-------~~~~~~~~~~f~~L~~L~l~~cp~L 204 (214)
....+++|++|+++++. +..++..-. ...+.. +..++..+..+++|+.|++.+++-.
T Consensus 186 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 65668888888887763 444432100 000110 0122334556677777777776543
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.01 E-value=1.2e-09 Score=89.92 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=65.7
Q ss_pred hccCcccceEEccccCcccccccccccc----cchhh--HhhhhhccCCccCceeeEEecccchhhhccCCcchhccccE
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKV----LSADA--ESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQA 82 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~----~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~ 82 (214)
++++++|+++++.+++....|.++.... +.... ......+..+++|+.|+++-.....++.. ...+.++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCcCCE
Confidence 5667777777777766655443332110 11100 00112344555566655543333222221 11234556
Q ss_pred EeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEe
Q 028049 83 LHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRIL 160 (214)
Q Consensus 83 L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~ 160 (214)
|++++. .+..++..+..+++|++|+++++.+..++... ...+++|+.|+++++ +++.+|. +..+++|+.|+++
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA---LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSST---TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred EECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHH---HcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECC
Confidence 666553 33344333444555566665554444443211 123455555555553 4455543 2344555555554
Q ss_pred cC
Q 028049 161 DC 162 (214)
Q Consensus 161 ~C 162 (214)
++
T Consensus 157 ~N 158 (290)
T 1p9a_G 157 NN 158 (290)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.01 E-value=1.6e-09 Score=90.14 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=95.3
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
+.+|.+.++++++|++|++.+++..+. ..+.+..+++|+.|+++-.....++.- ..+.++
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~~L~ 124 (330)
T 1xku_A 65 TEIKDGDFKNLKNLHTLILINNKISKI---------------SPGAFAPLVKLERLYLSKNQLKELPEK-----MPKTLQ 124 (330)
T ss_dssp CCBCTTTTTTCTTCCEEECCSSCCCCB---------------CTTTTTTCTTCCEEECCSSCCSBCCSS-----CCTTCC
T ss_pred CEeChhhhccCCCCCEEECCCCcCCee---------------CHHHhcCCCCCCEEECCCCcCCccChh-----hccccc
Confidence 456665677888888888888776221 122355667788887764443333221 125678
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRIL 160 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~ 160 (214)
.|+++++. +..++ ..+..+++|+.|++.++.+...... ......+++|+.|.++++ +++.+|.. ..++|++|+++
T Consensus 125 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~ 200 (330)
T 1xku_A 125 ELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHLD 200 (330)
T ss_dssp EEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECT
T ss_pred EEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcC-hhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEECC
Confidence 88887753 34443 3466677778877776444321110 011124666777777665 45555531 23566666666
Q ss_pred cCcccccccccc--cchhhHHH-------hhhc-ccCCCCCccCeeecCccccccccC
Q 028049 161 DCDDMEEIISVE--NFEKLIEV-------SEMM-GELNLFSGLESLSLGNASNLKAYV 208 (214)
Q Consensus 161 ~C~~l~~i~~~~--~~~~l~~~-------~~~~-~~~~~f~~L~~L~l~~cp~L~~i~ 208 (214)
++. +..+.... ....+..+ ..++ ..+..+++|++|+++++ ++..++
T Consensus 201 ~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp 256 (330)
T 1xku_A 201 GNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVP 256 (330)
T ss_dssp TSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCC
Confidence 553 22221100 00000000 0111 13456788999988887 355544
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.00 E-value=3e-09 Score=88.55 Aligned_cols=142 Identities=11% Similarity=0.157 Sum_probs=92.8
Q ss_pred CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccE
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQA 82 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~ 82 (214)
.+|.+++.++++|++|++.++..... ......+..+++|+.++++......++.. ..+.++.
T Consensus 135 ~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-----~~~~L~~ 196 (330)
T 1xku_A 135 KVRKSVFNGLNQMIVVELGTNPLKSS-------------GIENGAFQGMKKLSYIRIADTNITTIPQG-----LPPSLTE 196 (330)
T ss_dssp BBCHHHHTTCTTCCEEECCSSCCCGG-------------GBCTTGGGGCTTCCEEECCSSCCCSCCSS-----CCTTCSE
T ss_pred ccCHhHhcCCccccEEECCCCcCCcc-------------CcChhhccCCCCcCEEECCCCccccCCcc-----ccccCCE
Confidence 44555566666677776666655211 01123355667777777764444333321 1257889
Q ss_pred EeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEe
Q 028049 83 LHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRIL 160 (214)
Q Consensus 83 L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~ 160 (214)
|+++++. +..+. ..+..+++|++|+++++.+..+.... ...+++|++|+++++ ++..+|. +..+++|++|+++
T Consensus 197 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 197 LHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGS---LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp EECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTT---GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECC
T ss_pred EECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhh---ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECC
Confidence 9998864 44443 56778889999999987777654322 135889999999987 7888874 7778999999998
Q ss_pred cCcccccc
Q 028049 161 DCDDMEEI 168 (214)
Q Consensus 161 ~C~~l~~i 168 (214)
++. +..+
T Consensus 272 ~N~-i~~~ 278 (330)
T 1xku_A 272 NNN-ISAI 278 (330)
T ss_dssp SSC-CCCC
T ss_pred CCc-CCcc
Confidence 863 4444
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=1.2e-09 Score=98.28 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=74.6
Q ss_pred ccccEEeecCCCCCCch-hhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCcc
Q 028049 78 TITQALHIEDCNSLPLN-LLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLK 155 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l-~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~ 155 (214)
+.|+.|+++++. +..+ +..+..+++|+.|+++++.+..++... ..+++|+.|++++| ++..+|. +..+++|+
T Consensus 254 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 254 PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG----QPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 327 (597)
T ss_dssp TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSS----SCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred CCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCccc----ccCCCCcEEECCCC-CCCccCcccccCCCCC
Confidence 456777777753 3333 256778899999999998887765433 35899999999997 6778874 66789999
Q ss_pred EEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 156 ~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
+|+++++. +..+ .+..|++|+.|++.+.|
T Consensus 328 ~L~L~~N~-l~~~-----------------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHNS-IVTL-----------------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSC-CCCC-----------------CCCTTCCCSEEECCSSC
T ss_pred EEECCCCC-CCCc-----------------ChhhcCCCCEEEeeCCC
Confidence 99999975 3222 34567889999888765
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.99 E-value=2.2e-09 Score=89.68 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccc-cc-----cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEG-KV-----LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPK 75 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~-~~-----~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~ 75 (214)
..+|. +..+++|++|++.+|+..+.+. ... .. +....-..+..+..+++|+.|+++......++.+..
T Consensus 57 ~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~--- 130 (347)
T 4fmz_A 57 ASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLAN--- 130 (347)
T ss_dssp CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTT---
T ss_pred ccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhcc---
Confidence 44554 7888888888888887643221 000 00 000000011223344444444443222222222111
Q ss_pred hhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCcc
Q 028049 76 LQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLK 155 (214)
Q Consensus 76 l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~ 155 (214)
.+.++.|++++|.....++ .+..+++|++|++.++.+..+.. ...+++|+.|++++| +++.++.+..+++|+
T Consensus 131 -l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~ 202 (347)
T 4fmz_A 131 -LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYN-QIEDISPLASLTSLH 202 (347)
T ss_dssp -CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTS-CCCCCGGGGGCTTCC
T ss_pred -CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-----hccCCCCCEEEccCC-cccccccccCCCccc
Confidence 1245555555554443332 24445555555555533332211 123556666666655 445554444555566
Q ss_pred EEeEecC
Q 028049 156 CLRILDC 162 (214)
Q Consensus 156 ~L~i~~C 162 (214)
.+++.++
T Consensus 203 ~L~l~~n 209 (347)
T 4fmz_A 203 YFTAYVN 209 (347)
T ss_dssp EEECCSS
T ss_pred eeecccC
Confidence 6655554
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.97 E-value=1.7e-09 Score=88.27 Aligned_cols=179 Identities=16% Similarity=0.186 Sum_probs=107.6
Q ss_pred CCCChhhhccCcccceEEccccCcccc-cccccc----c--ccchh---hHhhhhhccCCccCceeeEEecccchhhhcc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHR-SIVEEG----K--VLSAD---AESLMKEIHCLEQLNLITLSLHGSRGVENFL 71 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~-~~~~~~----~--~~~~~---~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~ 71 (214)
..+|.+.+.++++|++|++.++...+. +..+.. . .+... .......+..+++|+.|+++......+..
T Consensus 45 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 122 (285)
T 1ozn_A 45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-- 122 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--
T ss_pred CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH--
Confidence 445655677888888888887765322 111100 0 00000 00012234556677777665333322210
Q ss_pred CCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC-c-cc
Q 028049 72 KFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL-T-WL 148 (214)
Q Consensus 72 ~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l-p-~~ 148 (214)
..-.-.+.++.|+++++ .+..++ ..+..+++|++|++.++.+..++.... ..+++|+.|+++++ ++..+ | .+
T Consensus 123 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~ 197 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF---RGLHSLDRLLLHQN-RVAHVHPHAF 197 (285)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT---TTCTTCCEEECCSS-CCCEECTTTT
T ss_pred hHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHHh---cCccccCEEECCCC-cccccCHhHc
Confidence 00011357899999886 344444 447788999999999977777654321 35889999999987 56665 3 36
Q ss_pred CCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 149 VFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 149 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
..+++|++|+++++ .+..++. ..+..+++|+.|++.+.|
T Consensus 198 ~~l~~L~~L~l~~n-~l~~~~~--------------~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 198 RDLGRLMTLYLFAN-NLSALPT--------------EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSS-CCSCCCH--------------HHHTTCTTCCEEECCSSC
T ss_pred cCcccccEeeCCCC-cCCcCCH--------------HHcccCcccCEEeccCCC
Confidence 67899999999987 4443332 134567889999988775
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.97 E-value=9.5e-10 Score=91.35 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=17.8
Q ss_pred CCChhhhccCcccceEEccccCc
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
.+|.. ++++++|++|++.+++.
T Consensus 92 ~~p~~-l~~l~~L~~L~Ls~n~l 113 (313)
T 1ogq_A 92 PIPPA-IAKLTQLHYLYITHTNV 113 (313)
T ss_dssp CCCGG-GGGCTTCSEEEEEEECC
T ss_pred cCChh-HhcCCCCCEEECcCCee
Confidence 56764 88888999999988877
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.95 E-value=2.3e-09 Score=94.44 Aligned_cols=135 Identities=13% Similarity=0.165 Sum_probs=82.9
Q ss_pred hhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccc
Q 028049 46 KEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGE 124 (214)
Q Consensus 46 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~ 124 (214)
..+..+++|+.|+++-.....++.+...-.-.+.++.|+++++.-...++ ..+..+++|++|+++++.+.....
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 416 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF----- 416 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-----
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh-----
Confidence 34566677777777654444333221110112467778887754322254 235566778888877755532211
Q ss_pred cCCC-CCccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 125 VQKM-PKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 125 ~~~~-~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
..+ ++|+.|++++| +++.+|. +..+++|++|+++++ .+..++. ..+..+++|++|++.+.|
T Consensus 417 -~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~--------------~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 417 -RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPD--------------GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred -hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCH--------------HHhccCCcccEEECcCCC
Confidence 112 68888888887 7778874 557888888888886 4554433 125668889999998876
No 42
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.95 E-value=4.3e-09 Score=81.45 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=97.0
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCCcchhc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKFPKLQT 78 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~~~l~~ 78 (214)
+..+| + +..+++|++|++.+|.... +..+..+++|+.|+++...... ...+. . .+
T Consensus 56 i~~l~-~-l~~l~~L~~L~l~~n~~~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~-l~ 112 (197)
T 4ezg_A 56 VTDLT-G-IEYAHNIKDLTINNIHATN-----------------YNPISGLSNLERLRIMGKDVTSDKIPNLS---G-LT 112 (197)
T ss_dssp CSCCT-T-GGGCTTCSEEEEESCCCSC-----------------CGGGTTCTTCCEEEEECTTCBGGGSCCCT---T-CT
T ss_pred ccChH-H-HhcCCCCCEEEccCCCCCc-----------------chhhhcCCCCCEEEeECCccCcccChhhc---C-CC
Confidence 34577 3 8999999999999996521 2246677899999988655443 22221 2 35
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccc-cceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEE
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESN-LEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCL 157 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~-l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L 157 (214)
.++.|+++++.--...+..+..+++|++|+++++. +..++ . ...+++|+.|++++| +++.++.+..+++|++|
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~----l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P----LKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQL 186 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G----GGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h----hcCCCCCCEEECCCC-CCcChHHhccCCCCCEE
Confidence 79999999874322233567888999999999954 66653 1 235899999999987 68888777789999999
Q ss_pred eEecC
Q 028049 158 RILDC 162 (214)
Q Consensus 158 ~i~~C 162 (214)
++++.
T Consensus 187 ~l~~N 191 (197)
T 4ezg_A 187 YAFSQ 191 (197)
T ss_dssp EECBC
T ss_pred EeeCc
Confidence 99874
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.95 E-value=1.7e-09 Score=91.01 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=91.9
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT 80 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l 80 (214)
++.||.+ +. ++|++|++.++...+. ..+.+..+++|+.|+++......+..- .+. -.+.+
T Consensus 43 l~~iP~~-~~--~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~l~~L 102 (353)
T 2z80_A 43 LNSIPSG-LT--EAVKSLDLSNNRITYI---------------SNSDLQRCVNLQALVLTSNGINTIEED-SFS-SLGSL 102 (353)
T ss_dssp CSSCCTT-CC--TTCCEEECTTSCCCEE---------------CTTTTTTCTTCCEEECTTSCCCEECTT-TTT-TCTTC
T ss_pred ccccccc-cc--ccCcEEECCCCcCccc---------------CHHHhccCCCCCEEECCCCccCccCHh-hcC-CCCCC
Confidence 3567875 33 4899999999987322 112356678888888764443332210 011 12568
Q ss_pred cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEE
Q 028049 81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCL 157 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L 157 (214)
+.|+++++ .+..++ ..+..+++|++|+++++.+..++.. +....+++|++|+++++..+..++. +..+++|++|
T Consensus 103 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 103 EHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCch--hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 89999875 445555 3467788999999988666665430 1123588899999998877777753 5668889999
Q ss_pred eEecCc
Q 028049 158 RILDCD 163 (214)
Q Consensus 158 ~i~~C~ 163 (214)
+++++.
T Consensus 180 ~l~~n~ 185 (353)
T 2z80_A 180 EIDASD 185 (353)
T ss_dssp EEEETT
T ss_pred ECCCCC
Confidence 988864
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.95 E-value=1.2e-09 Score=89.91 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=18.8
Q ss_pred CCCCChhhhccCcccceEEccccCc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
++.||.+++.++++|++|++.+++.
T Consensus 40 l~~i~~~~~~~l~~L~~L~L~~n~l 64 (306)
T 2z66_A 40 LQSLPHGVFDKLTQLTKLSLSSNGL 64 (306)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred cCccCHhHhhccccCCEEECCCCcc
Confidence 3567777678888888888888766
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.8e-09 Score=101.52 Aligned_cols=151 Identities=18% Similarity=0.168 Sum_probs=86.3
Q ss_pred CChhhhccCcccceEEccccCccc--ccccccccccchhhHhhhhhcc--CCccCceeeEEeccc-chhhhccCCcchhc
Q 028049 4 IPQQLISSFSKLQVLRMLHCGYAH--RSIVEEGKVLSADAESLMKEIH--CLEQLNLITLSLHGS-RGVENFLKFPKLQT 78 (214)
Q Consensus 4 iP~~~i~~L~~Lq~L~l~~~~~~~--~~~~~~~~~~~~~~~~~l~eL~--~L~~L~~L~i~~~~~-~~l~~l~~~~~l~~ 78 (214)
||.+ +++|++|++|++.++++.+ .+..|-.............++. .+++|+.|+++.... ..++..+ .-.+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l---~~L~ 515 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL---YDLP 515 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG---GGCS
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH---hCCC
Confidence 8885 9999999999999998843 0000000000000011334455 677888888764332 1122111 1124
Q ss_pred cccEEeecCCCCCCc--hhhhcccc-------cccchhhccccccceeec--ccccccCCCCCccEEeeecCcCCccCcc
Q 028049 79 ITQALHIEDCNSLPL--NLLHLANM-------EHLEKLFIEESNLEDWNV--DCAGEVQKMPKLHSVLIWNCSNVKDLTW 147 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~--l~~~l~~l-------~~L~~L~i~~~~l~~l~~--~~~~~~~~~~~L~~L~I~~C~~L~~lp~ 147 (214)
+|+.|+++++..+.. +|..+..+ ++|++|++.++.+..++. .. ..+++|+.|+++++ ++..+|.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l----~~L~~L~~L~Ls~N-~l~~lp~ 590 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL----QKMVKLGLLDCVHN-KVRHLEA 590 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH----TTCTTCCEEECTTS-CCCBCCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh----hcCCCCCEEECCCC-Ccccchh
Confidence 677888877654443 44333333 377777777766655543 12 24677777777765 4556665
Q ss_pred cCCCCCccEEeEecCc
Q 028049 148 LVFAPNLKCLRILDCD 163 (214)
Q Consensus 148 ~~~l~~L~~L~i~~C~ 163 (214)
+..+++|+.|+++++.
T Consensus 591 ~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CCTTSEESEEECCSSC
T ss_pred hcCCCcceEEECcCCc
Confidence 5666777777776653
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.94 E-value=1e-09 Score=90.29 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=14.6
Q ss_pred hccCcccceEEccccCcc
Q 028049 9 ISSFSKLQVLRMLHCGYA 26 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~ 26 (214)
+..+++|++|++.+++..
T Consensus 74 ~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp HHSCSCCCEEECCSCSEE
T ss_pred cccccccCEEECCCCccc
Confidence 567889999999988763
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.94 E-value=4.6e-09 Score=87.55 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccE
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQA 82 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~ 82 (214)
.+|.+++.++++|++|++.++..... ......+..+ +|+.++++......++.. ..+.++.
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-----~~~~L~~ 197 (332)
T 2ft3_A 137 KVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL-KLNYLRISEAKLTGIPKD-----LPETLNE 197 (332)
T ss_dssp CCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-CCSCCBCCSSBCSSCCSS-----SCSSCSC
T ss_pred ccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-ccCEEECcCCCCCccCcc-----ccCCCCE
Confidence 44544556666666666666654110 0011223333 555555543333332211 1246788
Q ss_pred EeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEe
Q 028049 83 LHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRIL 160 (214)
Q Consensus 83 L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~ 160 (214)
|+++++ .+..++ ..+..+++|++|++.++.+..+...+ ...+++|+.|+++++ +++.+|. +..+++|++|+++
T Consensus 198 L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 198 LHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS---LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp CBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG---GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECC
T ss_pred EECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhH---hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECC
Confidence 888775 334433 45677888999998887666654322 135789999999887 7888875 6778999999998
Q ss_pred cCcccccc
Q 028049 161 DCDDMEEI 168 (214)
Q Consensus 161 ~C~~l~~i 168 (214)
++ .+..+
T Consensus 273 ~N-~l~~~ 279 (332)
T 2ft3_A 273 TN-NITKV 279 (332)
T ss_dssp SS-CCCBC
T ss_pred CC-CCCcc
Confidence 85 45544
No 48
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.93 E-value=4e-10 Score=93.76 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=100.4
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCCcchhccccEEeec
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKFPKLQTITQALHIE 86 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~~~l~~~l~~L~l~ 86 (214)
+.++++|++|++++|... .......+..+++|+.|+++...... ...+.. .++|+.|+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~--------------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~ 150 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIE--------------VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLS 150 (336)
T ss_dssp CCCCBCCCEEECTTCEEC--------------HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECT
T ss_pred hccCCCCCEEEccCCCcC--------------HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECC
Confidence 456777777777777651 11122335667788888776433221 112211 3578889999
Q ss_pred CCCCCCc--hhhhcccccccchhhcccc-ccceeecccccccCCCC-CccEEeeecCc-CCc--cCcc-cCCCCCccEEe
Q 028049 87 DCNSLPL--NLLHLANMEHLEKLFIEES-NLEDWNVDCAGEVQKMP-KLHSVLIWNCS-NVK--DLTW-LVFAPNLKCLR 158 (214)
Q Consensus 87 ~c~~l~~--l~~~l~~l~~L~~L~i~~~-~l~~l~~~~~~~~~~~~-~L~~L~I~~C~-~L~--~lp~-~~~l~~L~~L~ 158 (214)
+|..+.. ++..+..+++|++|++.++ .+...... .....++ +|++|++++|. .+. .++. +..+++|++|+
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 8876663 3344667788899988874 66542110 0012477 89999999886 453 2332 44688999999
Q ss_pred EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccc
Q 028049 159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNL 204 (214)
Q Consensus 159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L 204 (214)
+++|..+..... ..+..+++|++|++.+|+.+
T Consensus 229 l~~~~~l~~~~~--------------~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 229 LSDSVMLKNDCF--------------QEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CTTCTTCCGGGG--------------GGGGGCTTCCEEECTTCTTC
T ss_pred CCCCCcCCHHHH--------------HHHhCCCCCCEeeCCCCCCC
Confidence 998875542211 13455689999999998643
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.92 E-value=3.7e-09 Score=97.90 Aligned_cols=136 Identities=11% Similarity=0.045 Sum_probs=81.4
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
++++++|++|++++|.+.+ .......+..+++|+.|+++......... .....-.++|+.|+++++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSG-------------PVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp CCCCTTCCEEECCSSEEEE-------------EGGGGGGGGGCTTCCEEECCSSEEECCSS-CCSCCCCTTCSEEECCSS
T ss_pred hccCCCCCEEECCCCcCCC-------------cCCChHHHhCCCCCCEEECcCCccCCcCC-HHHhccCCCCCEEECCCC
Confidence 7888888888888887621 11123356777888888876433211000 000011356888888886
Q ss_pred CCCCchhhh---cccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCc
Q 028049 89 NSLPLNLLH---LANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCD 163 (214)
Q Consensus 89 ~~l~~l~~~---l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~ 163 (214)
.--...+.. +..+++|++|+++++.+..... ...+++|++|++++|.--..+|.+..+++|++|++++|.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC-----cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence 432222222 5677888888888744443211 135788888888887443334556677888888887764
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.92 E-value=1.1e-08 Score=89.21 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=38.4
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR 158 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~ 158 (214)
.++.|+++++. +..+ ..+..+++|++|++.++.+..+.. ...+++|+.|++++| +++.++.+..+++|++|+
T Consensus 178 ~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 178 TLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLD 249 (466)
T ss_dssp TCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEE
T ss_pred CCCEEECcCCc-CCCC-hhhccCCCCCEEEecCCccccccc-----ccccCCCCEEECCCC-CcccchhhhcCCCCCEEE
Confidence 34555555442 2222 123444555555555533333211 123566666666665 455555555566666666
Q ss_pred EecC
Q 028049 159 ILDC 162 (214)
Q Consensus 159 i~~C 162 (214)
+++|
T Consensus 250 l~~n 253 (466)
T 1o6v_A 250 LANN 253 (466)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6665
No 51
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.91 E-value=3.7e-09 Score=84.85 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=99.7
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..++.+.++++++|++|++.++...+. ..+.+..+++|+.|+++-.....+..- .+ .-.+.|+
T Consensus 48 ~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~l~~L~ 110 (251)
T 3m19_A 48 ATLSDATFRGLTKLTWLNLDYNQLQTL---------------SAGVFDDLTELGTLGLANNQLASLPLG-VF-DHLTQLD 110 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCC---------------CTTTTTTCTTCCEEECTTSCCCCCCTT-TT-TTCTTCC
T ss_pred CccCHhHhcCcccCCEEECCCCcCCcc---------------CHhHhccCCcCCEEECCCCcccccChh-Hh-cccCCCC
Confidence 456766799999999999999987332 112356678888888765444333210 01 1235789
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~ 158 (214)
.|+++++ .+..++ ..+..+++|++|++.++.+..++... ...+++|+.|+++++ +++.++. +..+++|++|+
T Consensus 111 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 111 KLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA---FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred EEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHH---cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEE
Confidence 9999886 556665 34677899999999998787765422 235899999999986 7888874 56789999999
Q ss_pred EecCc
Q 028049 159 ILDCD 163 (214)
Q Consensus 159 i~~C~ 163 (214)
+.+++
T Consensus 186 l~~N~ 190 (251)
T 3m19_A 186 LFGNQ 190 (251)
T ss_dssp CCSCC
T ss_pred eeCCc
Confidence 98753
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.91 E-value=1.1e-08 Score=89.25 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=14.3
Q ss_pred hccCcccceEEccccCcc
Q 028049 9 ISSFSKLQVLRMLHCGYA 26 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~ 26 (214)
+.++++|++|++.+|...
T Consensus 195 l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQIS 212 (466)
T ss_dssp GGGCTTCSEEECCSSCCC
T ss_pred hccCCCCCEEEecCCccc
Confidence 778888888888888763
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.90 E-value=3.2e-09 Score=88.48 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=52.9
Q ss_pred CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccE
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQA 82 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~ 82 (214)
.+|.+.++++++|++|++.+++..+. ....+..+++|+.|+++......++.- ..+.++.
T Consensus 68 ~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~~L~~ 127 (332)
T 2ft3_A 68 ELRKDDFKGLQHLYALVLVNNKISKI---------------HEKAFSPLRKLQKLYISKNHLVEIPPN-----LPSSLVE 127 (332)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEE---------------CGGGSTTCTTCCEEECCSSCCCSCCSS-----CCTTCCE
T ss_pred ccCHhHhhCCCCCcEEECCCCccCcc---------------CHhHhhCcCCCCEEECCCCcCCccCcc-----ccccCCE
Confidence 34444466677777777776665211 123456667777777764443333221 1256788
Q ss_pred EeecCCCCCCchh-hhcccccccchhhccccccc
Q 028049 83 LHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLE 115 (214)
Q Consensus 83 L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~ 115 (214)
|+++++ .+..++ ..+..+++|++|++.++.+.
T Consensus 128 L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 128 LRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp EECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred EECCCC-ccCccCHhHhCCCccCCEEECCCCccc
Confidence 888775 334444 34667778888887774443
No 54
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=3.2e-09 Score=86.17 Aligned_cols=17 Identities=12% Similarity=-0.005 Sum_probs=10.6
Q ss_pred hccCcccceEEccccCc
Q 028049 9 ISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~ 25 (214)
+..+++|++|++.+|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i 53 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNI 53 (263)
T ss_dssp HHHHTTCSEEECTTSCC
T ss_pred hhhcCcCcEEECcCCCc
Confidence 45566666666666655
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.89 E-value=1.3e-08 Score=87.97 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=12.2
Q ss_pred CChhhhccCcccceEEccccCc
Q 028049 4 IPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 4 iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
||.+.++++++|++|++.+++.
T Consensus 70 i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 70 IRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTCTT
T ss_pred ECcccccccccCCEEeCCCCcc
Confidence 4444455566666666666554
No 56
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.89 E-value=1.5e-09 Score=98.55 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=85.4
Q ss_pred CChhhhccCcccceEEccccCccc--ccccccccccchhhHhhhhhcc--CCccCceeeEEecccchhhhccCCcchhcc
Q 028049 4 IPQQLISSFSKLQVLRMLHCGYAH--RSIVEEGKVLSADAESLMKEIH--CLEQLNLITLSLHGSRGVENFLKFPKLQTI 79 (214)
Q Consensus 4 iP~~~i~~L~~Lq~L~l~~~~~~~--~~~~~~~~~~~~~~~~~l~eL~--~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~ 79 (214)
||.. ++++++|++|++.++++.+ .+..|-.............++. .+++|+.|+++...... .++..-.-.++
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPE 274 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSS
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCC
Confidence 7885 9999999999999998743 0001111000000011334555 77888888876443211 11111111246
Q ss_pred ccEEeecCCCCCCc--hhhhcccc------cccchhhccccccceeec--ccccccCCCCCccEEeeecCcCCc-cCccc
Q 028049 80 TQALHIEDCNSLPL--NLLHLANM------EHLEKLFIEESNLEDWNV--DCAGEVQKMPKLHSVLIWNCSNVK-DLTWL 148 (214)
Q Consensus 80 l~~L~l~~c~~l~~--l~~~l~~l------~~L~~L~i~~~~l~~l~~--~~~~~~~~~~~L~~L~I~~C~~L~-~lp~~ 148 (214)
|+.|+++++..+.. ++..+..+ ++|++|++.++.+..++. .. ..+++|+.|+++++ ++. .+|.+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l----~~l~~L~~L~L~~N-~l~g~ip~~ 349 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL----QKMKKLGMLECLYN-QLEGKLPAF 349 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH----TTCTTCCEEECCSC-CCEEECCCC
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh----ccCCCCCEEeCcCC-cCccchhhh
Confidence 78888887764543 44334443 777888777765655543 22 24677777777765 455 56644
Q ss_pred CCCCCccEEeEecC
Q 028049 149 VFAPNLKCLRILDC 162 (214)
Q Consensus 149 ~~l~~L~~L~i~~C 162 (214)
..+++|++|+++++
T Consensus 350 ~~l~~L~~L~L~~N 363 (636)
T 4eco_A 350 GSEIKLASLNLAYN 363 (636)
T ss_dssp EEEEEESEEECCSS
T ss_pred CCCCCCCEEECCCC
Confidence 45566777776665
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.88 E-value=7.2e-09 Score=92.87 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=17.1
Q ss_pred CCccEEeeecCcCCccCcccCCCCCccEEeEecCc
Q 028049 129 PKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCD 163 (214)
Q Consensus 129 ~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~ 163 (214)
++|+.|.+.++ +++.+|.+..+++|++|++.+|.
T Consensus 285 ~~L~~L~l~~~-~~~~l~~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 285 ANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp TTCSEEEEESC-CCCCCCCCCTTCCCSEEEEESCC
T ss_pred CCCCEEEecCc-cchhhhhccccccCCEEEccccc
Confidence 34444444443 33444444445566666666654
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.88 E-value=2.5e-09 Score=88.78 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.9
Q ss_pred CCChhhhccCcccceEEccccCc
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
.+|.. ++++++|++|++.++..
T Consensus 116 ~~p~~-~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 116 AIPDF-LSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp ECCGG-GGGCTTCCEEECCSSEE
T ss_pred cCCHH-HhCCCCCCEEeCCCCcc
Confidence 45664 88999999999999877
No 59
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.86 E-value=1.1e-08 Score=83.01 Aligned_cols=131 Identities=13% Similarity=0.191 Sum_probs=99.8
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT 80 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l 80 (214)
++.+|. ++.+++|++|++.+++..+. ..+..+++|+.|+++-.....++.+.. ..+
T Consensus 53 i~~l~~--l~~l~~L~~L~L~~N~i~~~-----------------~~l~~l~~L~~L~L~~N~l~~l~~~~~-----~~L 108 (263)
T 1xeu_A 53 IQSLAG--MQFFTNLKELHLSHNQISDL-----------------SPLKDLTKLEELSVNRNRLKNLNGIPS-----ACL 108 (263)
T ss_dssp CCCCTT--GGGCTTCCEEECCSSCCCCC-----------------GGGTTCSSCCEEECCSSCCSCCTTCCC-----SSC
T ss_pred cccchH--HhhCCCCCEEECCCCccCCC-----------------hhhccCCCCCEEECCCCccCCcCcccc-----Ccc
Confidence 356773 89999999999999987322 115677889999888666555554322 689
Q ss_pred cEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEe
Q 028049 81 QALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRIL 160 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~ 160 (214)
+.|+++++ .+..++ .+..+++|+.|+++++.+..+. . ...+++|+.|+++++ ++..++.+..+++|+.|+++
T Consensus 109 ~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~----l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 109 SRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIV-M----LGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLT 180 (263)
T ss_dssp CEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCG-G----GGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEE
T ss_pred cEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCCCh-H----HccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCC
Confidence 99999987 555553 5778899999999997777653 1 235899999999986 77777767789999999998
Q ss_pred cCc
Q 028049 161 DCD 163 (214)
Q Consensus 161 ~C~ 163 (214)
++.
T Consensus 181 ~N~ 183 (263)
T 1xeu_A 181 GQK 183 (263)
T ss_dssp EEE
T ss_pred CCc
Confidence 864
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.85 E-value=5.4e-09 Score=93.70 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=37.2
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccce--eecccccccCCCCCccEEeeecCcCCccCc--ccCCCCCc
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLED--WNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFAPNL 154 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~--l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l~~L 154 (214)
.++.|+++++.-....+..+..+++|++|++.++.+.. ++.. ...+++|+.|++++| ++..++ .+..+++|
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLTFLDLSKC-QLEQISWGVFDTLHRL 499 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh----hccCCCCCEEECCCC-cCCccChhhhcccccC
Confidence 45556665553221122334455556666655533332 1111 123556666666655 444432 14445666
Q ss_pred cEEeEecC
Q 028049 155 KCLRILDC 162 (214)
Q Consensus 155 ~~L~i~~C 162 (214)
++|+++++
T Consensus 500 ~~L~Ls~N 507 (606)
T 3vq2_A 500 QLLNMSHN 507 (606)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 66666555
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.85 E-value=1.2e-08 Score=91.47 Aligned_cols=141 Identities=17% Similarity=0.109 Sum_probs=71.0
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..+|.+.++++++|++|++.++.....| ..+..+++|+.|+++-.....+.. ..-.-.+.++
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp----------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~ 328 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELP----------------SGLVGLSTLKKLVLSANKFENLCQ--ISASNFPSLT 328 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCC----------------SSCCSCTTCCEEECTTCCCSBGGG--GCGGGCTTCS
T ss_pred CccCHHHhccccCCCEEeccCCccCCCC----------------hhhcccccCCEEECccCCcCcCch--hhhhccCcCC
Confidence 3466666778888888888888763322 124455666666654333222210 0001123566
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc--ccCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l~~L~~L~ 158 (214)
.|+++++.-...++ ..+..+++|++|+++++.+..+... ......+++|++|++++| ++..++ .+..+++|++|+
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC-NLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES-TTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEE
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc-chhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEE
Confidence 67776654332332 2355566666666666444443210 001124566666666655 333332 134455666666
Q ss_pred EecC
Q 028049 159 ILDC 162 (214)
Q Consensus 159 i~~C 162 (214)
++++
T Consensus 407 l~~n 410 (606)
T 3t6q_A 407 LAFT 410 (606)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6554
No 62
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.84 E-value=4.8e-09 Score=94.94 Aligned_cols=147 Identities=17% Similarity=0.249 Sum_probs=105.7
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
...|++|+.|++.++.... +..+..+++|+.|+++-..+..+..+. -.+.|+.|+|+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-----------------l~~l~~l~~L~~L~Ls~N~l~~~~~l~----~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-----------------VQGIQYLPNVTKLFLNGNKLTDIKPLT----NLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-----------------CTTGGGCTTCCEEECTTSCCCCCGGGG----GCTTCCEEECCSS
T ss_pred hhcCCCCCEEECcCCCCCC-----------------ChHHccCCCCCEEEeeCCCCCCChhhc----cCCCCCEEECcCC
Confidence 4578899999999988722 224666788888888755544444322 2357899999887
Q ss_pred CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccc
Q 028049 89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEI 168 (214)
Q Consensus 89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i 168 (214)
.+..++ .+..+++|+.|++.++.+..+.. ...+++|+.|.+++| ++..++.+..+++|+.|++++|. +..+
T Consensus 98 -~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~ 168 (605)
T 1m9s_A 98 -KIKDLS-SLKDLKKLKSLSLEHNGISDING-----LVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDI 168 (605)
T ss_dssp -CCCCCT-TSTTCTTCCEEECTTSCCCCCGG-----GGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCC
T ss_pred -CCCCCh-hhccCCCCCEEEecCCCCCCCcc-----ccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCc
Confidence 445553 67788899999999866665421 235899999999987 78888777889999999998873 3333
Q ss_pred cccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049 169 ISVENFEKLIEVSEMMGELNLFSGLESLSLGNA 201 (214)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c 201 (214)
+ .+..+++|+.|+++++
T Consensus 169 ~----------------~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 169 V----------------PLAGLTKLQNLYLSKN 185 (605)
T ss_dssp G----------------GGTTCTTCCEEECCSS
T ss_pred h----------------hhccCCCCCEEECcCC
Confidence 2 2445678888888765
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.83 E-value=1.6e-08 Score=90.24 Aligned_cols=156 Identities=14% Similarity=0.164 Sum_probs=99.4
Q ss_pred ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049 10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN 89 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~ 89 (214)
..+++|++|++.+++..+ .....+..+++|+.|+++-.....++.+...-.-.+.++.|+++++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD---------------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCEEECCSSCCCT---------------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cCCCCceEEECCCCcccc---------------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 556677777777766521 12334566778888887655544443322111123568888888764
Q ss_pred CCCchh-hhcccccccchhhccccccceeecccccccCCC-CCccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccc
Q 028049 90 SLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKM-PKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDME 166 (214)
Q Consensus 90 ~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~-~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~ 166 (214)
--..++ ..+..+++|++|+++++.+..... ..+ ++|+.|+++++ +++.+|. +..+++|++|+++++ ++.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVF------RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLK 486 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG------SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCC
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchh------hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCC
Confidence 322244 335667788888888755543211 123 68999999987 8888874 567899999999885 455
Q ss_pred cccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 167 EIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 167 ~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
.++. ..+..+++|+.|++.+.|
T Consensus 487 ~l~~--------------~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 487 SVPD--------------GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCT--------------TSTTTCTTCCCEECCSCC
T ss_pred CCCH--------------HHHhcCCCCCEEEecCCC
Confidence 5443 125678889999998876
No 64
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=1.7e-08 Score=83.01 Aligned_cols=147 Identities=15% Similarity=0.218 Sum_probs=101.0
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccc-cc-----cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEG-KV-----LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPK 75 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~-~~-----~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~ 75 (214)
+.+|. +..+++|++|++++|+..+.+. +.. .. +....-..+..+..+++|+.|+++-.....++.+..
T Consensus 59 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~--- 132 (291)
T 1h6t_A 59 KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH--- 132 (291)
T ss_dssp CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGG---
T ss_pred ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcC---
Confidence 34554 7778888888888887654432 110 00 111111124457778889999887555555443322
Q ss_pred hhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCcc
Q 028049 76 LQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLK 155 (214)
Q Consensus 76 l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~ 155 (214)
.++++.|+++++ .+..+ ..+..+++|+.|+++++.+..+.. ...+++|+.|+++++ +++.++.+..+++|+
T Consensus 133 -l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~ 203 (291)
T 1h6t_A 133 -LPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKN-HISDLRALAGLKNLD 203 (291)
T ss_dssp -CTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCBCGGGTTCTTCS
T ss_pred -CCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCC-cCCCChhhccCCCCC
Confidence 257899999886 44555 467788999999999877766532 246899999999987 888888888899999
Q ss_pred EEeEecCc
Q 028049 156 CLRILDCD 163 (214)
Q Consensus 156 ~L~i~~C~ 163 (214)
.|++++++
T Consensus 204 ~L~l~~n~ 211 (291)
T 1h6t_A 204 VLELFSQE 211 (291)
T ss_dssp EEEEEEEE
T ss_pred EEECcCCc
Confidence 99999864
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.82 E-value=1.5e-08 Score=88.54 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=76.4
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
++++++|++|+++++...+. .++..+++|+.|+++-.....++ + .. .++++.|+++++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-----------------~~l~~l~~L~~L~Ls~n~l~~~~-~---~~-l~~L~~L~Ls~N 95 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-----------------TGIEKLTGLTKLICTSNNITTLD-L---SQ-NTNLTYLACDSN 95 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-----------------TTGGGCTTCSEEECCSSCCSCCC-C---TT-CTTCSEEECCSS
T ss_pred hhHcCCCCEEEccCCCcccC-----------------hhhcccCCCCEEEccCCcCCeEc-c---cc-CCCCCEEECcCC
Confidence 67899999999999987321 13455677777777654444432 1 11 246777777775
Q ss_pred CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccc
Q 028049 89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDME 166 (214)
Q Consensus 89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~ 166 (214)
. +..+ .+..+++|++|+++++.+..++ . ..+++|+.|+++++ +++.++ +..+++|++|++++|..+.
T Consensus 96 ~-l~~~--~~~~l~~L~~L~L~~N~l~~l~--~----~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 96 K-LTNL--DVTPLTKLTYLNCDTNKLTKLD--V----SQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp C-CSCC--CCTTCTTCCEEECCSSCCSCCC--C----TTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCC
T ss_pred C-Ccee--ecCCCCcCCEEECCCCcCCeec--C----CCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccc
Confidence 3 4444 2566677777777775555542 1 24666777777664 455554 3456666666666664443
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.81 E-value=4.6e-08 Score=85.50 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=83.0
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..+|. ++++++|++|+++++...+. .+..+++|+.|+++-.....++ + .. .+.++
T Consensus 55 ~~~~~--l~~l~~L~~L~Ls~n~l~~~------------------~~~~l~~L~~L~Ls~N~l~~~~-~---~~-l~~L~ 109 (457)
T 3bz5_A 55 TDMTG--IEKLTGLTKLICTSNNITTL------------------DLSQNTNLTYLACDSNKLTNLD-V---TP-LTKLT 109 (457)
T ss_dssp CCCTT--GGGCTTCSEEECCSSCCSCC------------------CCTTCTTCSEEECCSSCCSCCC-C---TT-CTTCC
T ss_pred ccChh--hcccCCCCEEEccCCcCCeE------------------ccccCCCCCEEECcCCCCceee-c---CC-CCcCC
Confidence 45663 89999999999999987321 1556677888887655444432 2 12 34678
Q ss_pred EEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049 82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD 161 (214)
Q Consensus 82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~ 161 (214)
.|+++++ .+..+ .+..+++|++|++.++.+..+. . ..+++|+.|++++|..+..++ +..+++|++|++++
T Consensus 110 ~L~L~~N-~l~~l--~~~~l~~L~~L~l~~N~l~~l~--l----~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 110 YLNCDTN-KLTKL--DVSQNPLLTYLNCARNTLTEID--V----SHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSF 179 (457)
T ss_dssp EEECCSS-CCSCC--CCTTCTTCCEEECTTSCCSCCC--C----TTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCS
T ss_pred EEECCCC-cCCee--cCCCCCcCCEEECCCCccceec--c----ccCCcCCEEECCCCCcccccc-cccCCcCCEEECCC
Confidence 8888776 44444 2667778888888776665542 1 246777777777776666653 34567777777766
Q ss_pred C
Q 028049 162 C 162 (214)
Q Consensus 162 C 162 (214)
+
T Consensus 180 n 180 (457)
T 3bz5_A 180 N 180 (457)
T ss_dssp S
T ss_pred C
Confidence 5
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.81 E-value=7.9e-09 Score=83.82 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=75.3
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..||.+ +. ++|++|++.+++..+.+ ...+..+++|+.|+++-.....+..- .+. -.+.++
T Consensus 20 ~~ip~~-l~--~~l~~L~ls~n~l~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~-~l~~L~ 79 (276)
T 2z62_A 20 YKIPDN-LP--FSTKNLDLSFNPLRHLG---------------SYSFFSFPELQVLDLSRCEIQTIEDG-AYQ-SLSHLS 79 (276)
T ss_dssp SSCCSS-SC--TTCCEEECTTCCCCEEC---------------TTTTTTCTTCSEEECTTCCCCEECTT-TTT-TCTTCC
T ss_pred cccCCC-CC--CCccEEECCCCcccccC---------------HhHhccccCCcEEECCCCcCCccCHH-Hcc-CCcCCC
Confidence 457765 33 57999999999873321 11345566777776653333222210 011 124677
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCcc--Cc-ccCCCCCccEE
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD--LT-WLVFAPNLKCL 157 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~--lp-~~~~l~~L~~L 157 (214)
.|+++++. +..++ ..+..+++|++|++.++.+..+.... ...+++|+.|+++++ +++. +| .+..+++|++|
T Consensus 80 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 80 TLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp EEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEE
T ss_pred EEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchh---cccCCCCCEEECcCC-ccceecCchhhccCCCCCEE
Confidence 77777653 33333 34566677777777665444432211 134667777777765 4444 33 24556777777
Q ss_pred eEecC
Q 028049 158 RILDC 162 (214)
Q Consensus 158 ~i~~C 162 (214)
+++++
T Consensus 155 ~Ls~N 159 (276)
T 2z62_A 155 DLSSN 159 (276)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 77665
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.78 E-value=1.6e-08 Score=90.63 Aligned_cols=159 Identities=11% Similarity=0.142 Sum_probs=79.3
Q ss_pred CCChhhhccCcccceEEccccCccccc---cccccc-c-----cchhh--HhhhhhccCCccCceeeEEecccchhhhcc
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGYAHRS---IVEEGK-V-----LSADA--ESLMKEIHCLEQLNLITLSLHGSRGVENFL 71 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~---~~~~~~-~-----~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~ 71 (214)
.+|.+.+.++++|++|++.+++..+.. ..+... . +.... ....+.+..+++|+.|+++.........-.
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 567777889999999999998773321 000000 0 00000 001122333444555544322211110000
Q ss_pred CCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc--ccC
Q 028049 72 KFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLV 149 (214)
Q Consensus 72 ~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~ 149 (214)
.+. -.+.++.|+++++.--...+..+..+++|++|+++++.+.............+++|+.|++++| ++..++ .+.
T Consensus 420 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 497 (606)
T 3t6q_A 420 PFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFT 497 (606)
T ss_dssp TTT-TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTT
T ss_pred hhh-CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhc
Confidence 000 1235667777665322111234556677777777775444321111111235778888888877 555553 255
Q ss_pred CCCCccEEeEecCc
Q 028049 150 FAPNLKCLRILDCD 163 (214)
Q Consensus 150 ~l~~L~~L~i~~C~ 163 (214)
.+++|++|+++++.
T Consensus 498 ~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 498 SLKMMNHVDLSHNR 511 (606)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEECCCCc
Confidence 67888888888763
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.78 E-value=9.2e-09 Score=91.24 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=61.6
Q ss_pred ccccEEeecCCCCCCchhhhcccccccchhhccccccc--eeecccccccCCCCCccEEeeecCcCCccC-c-ccCCCCC
Q 028049 78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLE--DWNVDCAGEVQKMPKLHSVLIWNCSNVKDL-T-WLVFAPN 153 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~--~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l-p-~~~~l~~ 153 (214)
++++.|++++|.-....+..+..+++|++|++.++.+. .++.. ...+++|+.|++++| +++.+ | .+..+++
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQC-QLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh----hhcccCCCEEECCCC-ccccCChhhhhcccC
Confidence 35666666665322222234555667777777664433 22211 134677777777776 45555 3 2556777
Q ss_pred ccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 154 L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
|++|++++| ++..++. ..+..+++|+.|++.+.|
T Consensus 496 L~~L~l~~n-~l~~~~~--------------~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 496 LQVLNMASN-QLKSVPD--------------GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSS-CCSCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred CCEEeCCCC-cCCCCCH--------------HHhhcccCCcEEEecCCc
Confidence 777777776 3443332 245677889999998865
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=1e-08 Score=96.39 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=86.8
Q ss_pred CChhhhc--cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecc-cch--hhh----cc-CC
Q 028049 4 IPQQLIS--SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHG-SRG--VEN----FL-KF 73 (214)
Q Consensus 4 iP~~~i~--~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~-~~~--l~~----l~-~~ 73 (214)
||.+ ++ ++++|++|++++|...+- ....+..+++|+.|+++... ... ++. +. .+
T Consensus 481 iP~~-l~f~~L~~L~~L~Ls~N~l~~~---------------iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~ 544 (876)
T 4ecn_A 481 ENEE-LSWSNLKDLTDVELYNCPNMTQ---------------LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544 (876)
T ss_dssp TTSC-CCGGGCTTCCEEEEESCTTCCS---------------CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCT
T ss_pred CChh-hhhccCCCCCEEECcCCCCCcc---------------ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcc
Confidence 7876 66 999999999999976221 12345566777777776443 221 221 11 11
Q ss_pred cchhccccEEeecCCCCCCchhh--hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCC
Q 028049 74 PKLQTITQALHIEDCNSLPLNLL--HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVF 150 (214)
Q Consensus 74 ~~l~~~l~~L~l~~c~~l~~l~~--~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~ 150 (214)
.-.++|+.|+++++. +..++. .+..+++|+.|+++++.+..++ .. ..+++|+.|+++++ ++..+|. +..
T Consensus 545 -~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~----~~L~~L~~L~Ls~N-~l~~lp~~l~~ 616 (876)
T 4ecn_A 545 -DTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AF----GTNVKLTDLKLDYN-QIEEIPEDFCA 616 (876)
T ss_dssp -TTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CC----CTTSEESEEECCSS-CCSCCCTTSCE
T ss_pred -cccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hh----cCCCcceEEECcCC-ccccchHHHhh
Confidence 112367888887764 345654 5777788888888776565554 22 34677777887775 4556663 555
Q ss_pred CCC-ccEEeEecCcccccc
Q 028049 151 APN-LKCLRILDCDDMEEI 168 (214)
Q Consensus 151 l~~-L~~L~i~~C~~l~~i 168 (214)
+++ |++|+++++. +..+
T Consensus 617 l~~~L~~L~Ls~N~-L~~l 634 (876)
T 4ecn_A 617 FTDQVEGLGFSHNK-LKYI 634 (876)
T ss_dssp ECTTCCEEECCSSC-CCSC
T ss_pred ccccCCEEECcCCC-CCcC
Confidence 666 7777777764 3344
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.77 E-value=4.4e-08 Score=86.25 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=57.7
Q ss_pred ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCcc-Ccc--cCCCCCc
Q 028049 78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD-LTW--LVFAPNL 154 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~-lp~--~~~l~~L 154 (214)
+.++.|+++++.--..++..+..+++|+.|+++++.+..++. .......+++|+.|+++++ ++.. +|. ...+++|
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK-IAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTC
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc-chHHHhhCCCCCEEECCCC-cCCcccccchhccCccC
Confidence 345566665543222122344555556666655544433210 0000123555555555554 3333 442 2334555
Q ss_pred cEEeEecCcccccccccccchhhHH-------HhhhcccCCCCCccCeeecCccccccccCCC
Q 028049 155 KCLRILDCDDMEEIISVENFEKLIE-------VSEMMGELNLFSGLESLSLGNASNLKAYVHR 210 (214)
Q Consensus 155 ~~L~i~~C~~l~~i~~~~~~~~l~~-------~~~~~~~~~~f~~L~~L~l~~cp~L~~i~~~ 210 (214)
++|++++|.--..++.... ..+.. +..++..+..+++|++|+++++ +++.++..
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred CEEECcCCCCCcchhhhhc-ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 5555555432111111000 00000 0122234457889999999887 46666654
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.77 E-value=1.4e-08 Score=89.85 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT 80 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l 80 (214)
+.+||.+ +. ++|++|++.+++..+. ....+..+++|+.|+++-.....+.. ..+.. .++|
T Consensus 17 l~~ip~~-~~--~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~-l~~L 76 (549)
T 2z81_A 17 FTSIPSG-LT--AAMKSLDLSFNKITYI---------------GHGDLRACANLQVLILKSSRINTIEG-DAFYS-LGSL 76 (549)
T ss_dssp CSSCCSC-CC--TTCCEEECCSSCCCEE---------------CSSTTSSCTTCCEEECTTSCCCEECT-TTTTT-CTTC
T ss_pred ccccccc-CC--CCccEEECcCCccCcc---------------ChhhhhcCCcccEEECCCCCcCccCh-hhccc-cccC
Confidence 3567875 32 7899999999987321 12245667888888876444333221 00111 2468
Q ss_pred cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEE
Q 028049 81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCL 157 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L 157 (214)
+.|+++++. +..++ ..+..+++|++|+++++.+..+... .....+++|++|+++++..+..+|. +..+++|++|
T Consensus 77 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 77 EHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp CEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchh--hhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 889998863 44444 4477888899999888666543211 1123578899999988876777763 5668888888
Q ss_pred eEecCc
Q 028049 158 RILDCD 163 (214)
Q Consensus 158 ~i~~C~ 163 (214)
+++++.
T Consensus 154 ~L~~n~ 159 (549)
T 2z81_A 154 EIKALS 159 (549)
T ss_dssp EEEETT
T ss_pred eccCCc
Confidence 888764
No 73
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.77 E-value=1.7e-08 Score=93.53 Aligned_cols=112 Identities=16% Similarity=0.072 Sum_probs=68.9
Q ss_pred ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc-ccCCCCCccE
Q 028049 78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT-WLVFAPNLKC 156 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp-~~~~l~~L~~ 156 (214)
+.++.|+++++.-...++..+..+++|++|++.++.+......+ ...+++|+.|++++|.--..+| ++..+++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG---LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH---HhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 35677777776543344445666677777777775554221111 1247778888888774333555 3667788888
Q ss_pred EeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccccccc
Q 028049 157 LRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAY 207 (214)
Q Consensus 157 L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i 207 (214)
|++++|.-...++ ..+..+++|+.|++.+++--..+
T Consensus 519 L~L~~N~l~~~~p---------------~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 519 LKLSNNSFSGNIP---------------AELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp EECCSSCCEEECC---------------GGGGGCTTCCEEECCSSEEESBC
T ss_pred EECCCCcccCcCC---------------HHHcCCCCCCEEECCCCccCCcC
Confidence 8888774333332 25566788999999887644333
No 74
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.76 E-value=2e-08 Score=79.63 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=95.3
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..||.+ +. ++|++|++.++...+. ....+..+++|+.|+++-.....++.-. + .-.+.|+
T Consensus 32 ~~ip~~-~~--~~L~~L~Ls~n~i~~~---------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~-~-~~l~~L~ 91 (229)
T 3e6j_A 32 ASVPAG-IP--TNAQILYLHDNQITKL---------------EPGVFDSLINLKELYLGSNQLGALPVGV-F-DSLTQLT 91 (229)
T ss_dssp SSCCSC-CC--TTCSEEECCSSCCCCC---------------CTTTTTTCTTCCEEECCSSCCCCCCTTT-T-TTCTTCC
T ss_pred CccCCC-CC--CCCCEEEcCCCccCcc---------------CHHHhhCccCCcEEECCCCCCCCcChhh-c-ccCCCcC
Confidence 567775 33 8999999999987322 1123566788888888755544433110 1 1135789
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~ 158 (214)
.|+++++ .+..++ ..+..+++|+.|++.++.+..++... ..+++|+.|+++++ +++.++. +..+++|+.|+
T Consensus 92 ~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 92 VLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI----ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTG----GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCC-cCCccChhHhCcchhhCeEeccCCcccccCccc----ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEE
Confidence 9999886 556665 44678889999999997777765433 35899999999985 8888874 56789999999
Q ss_pred EecC
Q 028049 159 ILDC 162 (214)
Q Consensus 159 i~~C 162 (214)
+.+.
T Consensus 166 l~~N 169 (229)
T 3e6j_A 166 LFGN 169 (229)
T ss_dssp CTTS
T ss_pred eeCC
Confidence 9764
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.76 E-value=1.8e-08 Score=83.29 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=71.5
Q ss_pred CCChhhh-ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 3 EIPQQLI-SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 3 ~iP~~~i-~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
.+|...+ .++++|++|++++++..+. ..... ...+..+++|+.|+++-.....+..- .+. -.+.++
T Consensus 106 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~--------~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~-~l~~L~ 172 (310)
T 4glp_A 106 TMPPLPLEATGLALSSLRLRNVSWATG--------RSWLA---ELQQWLKPGLKVLSIAQAHSPAFSCE-QVR-AFPALT 172 (310)
T ss_dssp CCCCCSSSCCCBCCSSCEEESCCCSST--------TSSHH---HHHTTBCSCCCEEEEECCSSCCCCTT-SCC-CCTTCC
T ss_pred chhhhhhhccCCCCCEEEeecccccch--------hhhhH---HHHhhhccCCCEEEeeCCCcchhhHH-Hhc-cCCCCC
Confidence 3454322 8899999999999987321 00000 11233566777777765444322210 011 124577
Q ss_pred EEeecCCCCCCc--hh--hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC-cc-cCC---CC
Q 028049 82 ALHIEDCNSLPL--NL--LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL-TW-LVF---AP 152 (214)
Q Consensus 82 ~L~l~~c~~l~~--l~--~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l-p~-~~~---l~ 152 (214)
.|+++++.-... ++ ..+..+++|++|+++++.+..++.........+++|++|+++++ ++..+ |. +.. ++
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcC
Confidence 777777642211 11 11245667777777665554332110000013466666666654 44444 31 222 25
Q ss_pred CccEEeEecC
Q 028049 153 NLKCLRILDC 162 (214)
Q Consensus 153 ~L~~L~i~~C 162 (214)
+|++|+++++
T Consensus 252 ~L~~L~Ls~N 261 (310)
T 4glp_A 252 ALNSLNLSFA 261 (310)
T ss_dssp TCCCEECCSS
T ss_pred cCCEEECCCC
Confidence 6666666554
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.76 E-value=2.2e-08 Score=83.06 Aligned_cols=168 Identities=14% Similarity=0.055 Sum_probs=97.8
Q ss_pred hccCcccceEEccccCcccccccccccc--cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeec
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKV--LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIE 86 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~--~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~ 86 (214)
+.++++|++|++.+|+..+.+....... +....-..+ ....+++|+.|+++-.....+.... + .-.+.++.|+++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~l~~~~~~~-~-~~l~~L~~L~Ls 152 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITMLRDLD-E-GCRSRVQYLDLK 152 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEE-EECCCSSCEEEECCSSCCCSGGGBC-T-GGGSSEEEEECT
T ss_pred hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCc-CccccCCCCEEECCCCCCCCccchh-h-hccCCCCEEECC
Confidence 6789999999999998744331111000 000000000 0123456777776644444332211 1 123578889998
Q ss_pred CCCCCCchh-hhc-ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCc
Q 028049 87 DCNSLPLNL-LHL-ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCD 163 (214)
Q Consensus 87 ~c~~l~~l~-~~l-~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~ 163 (214)
++ .+..+. ..+ ..+++|++|+++++.+..++.. ..+++|+.|+++++ +++.+|. +..+++|++|+++++
T Consensus 153 ~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N- 224 (317)
T 3o53_A 153 LN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN- 224 (317)
T ss_dssp TS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-
T ss_pred CC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc-----cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-
Confidence 86 344432 223 4678889999888777766321 24788888988886 6777754 566788888888886
Q ss_pred ccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 164 DMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 164 ~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
.+..++. .+..+++|+.|++.+.+
T Consensus 225 ~l~~l~~---------------~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 225 KLVLIEK---------------ALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCCEECT---------------TCCCCTTCCEEECTTCC
T ss_pred cccchhh---------------HhhcCCCCCEEEccCCC
Confidence 4544432 33445566666666544
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.76 E-value=4.7e-08 Score=88.77 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=39.2
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeeccc-cc----ccCCCCCccEEeeecCcCCccCcc--cCC
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDC-AG----EVQKMPKLHSVLIWNCSNVKDLTW--LVF 150 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~-~~----~~~~~~~L~~L~I~~C~~L~~lp~--~~~ 150 (214)
.++.|+++++ .+..++ ..+..+++|+.|+++++.+..+.... .+ ....+++|+.|+++++ +++.+|. +..
T Consensus 481 ~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~ 558 (680)
T 1ziw_A 481 NLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKD 558 (680)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHccc
Confidence 4556666554 233333 23455556666666654444331100 00 0123556666666654 5555553 345
Q ss_pred CCCccEEeEec
Q 028049 151 APNLKCLRILD 161 (214)
Q Consensus 151 l~~L~~L~i~~ 161 (214)
+++|++|++++
T Consensus 559 l~~L~~L~Ls~ 569 (680)
T 1ziw_A 559 LFELKIIDLGL 569 (680)
T ss_dssp CTTCCEEECCS
T ss_pred ccCcceeECCC
Confidence 56666666644
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.75 E-value=1.5e-08 Score=91.95 Aligned_cols=21 Identities=10% Similarity=0.344 Sum_probs=16.4
Q ss_pred CChhhhc--cCcccceEEccccCc
Q 028049 4 IPQQLIS--SFSKLQVLRMLHCGY 25 (214)
Q Consensus 4 iP~~~i~--~L~~Lq~L~l~~~~~ 25 (214)
||.. ++ ++++|++|++++|..
T Consensus 239 ip~~-l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 239 KTED-LKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp TTSC-CCGGGCTTCCEEEEECCTT
T ss_pred Cchh-hhhcccCCCCEEEecCCcC
Confidence 7765 77 888888888888865
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.74 E-value=3.3e-08 Score=83.13 Aligned_cols=76 Identities=16% Similarity=0.042 Sum_probs=43.9
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEE
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCL 157 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L 157 (214)
.++.+.+.++..++.++ ..+..+++|+.|+++++.+..++. ..|.+|++|.+.++.+++.+|.+..+++|+.+
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~------~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS------YGLENLKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS------SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh------hhhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence 45555665555555554 334556666666666655555432 12556666666666666666665556666666
Q ss_pred eEe
Q 028049 158 RIL 160 (214)
Q Consensus 158 ~i~ 160 (214)
++.
T Consensus 252 ~l~ 254 (350)
T 4ay9_X 252 SLT 254 (350)
T ss_dssp ECS
T ss_pred cCC
Confidence 654
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.73 E-value=1.3e-08 Score=84.25 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=71.6
Q ss_pred CCChhhh-ccCcccceEEccccCcccccccccccccchhhHhhhhhccC--CccCceeeEEecccchhh-hccCCcchhc
Q 028049 3 EIPQQLI-SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHC--LEQLNLITLSLHGSRGVE-NFLKFPKLQT 78 (214)
Q Consensus 3 ~iP~~~i-~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~--L~~L~~L~i~~~~~~~l~-~l~~~~~l~~ 78 (214)
.+|..++ .++++|++|++.+++..+.| ..+..+.. +++|+.|+++-.....+. ..+ . -.+
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~-~l~ 173 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRD-------------AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--R-VFP 173 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSS-------------SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--C-CCS
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchh-------------HHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--c-cCC
Confidence 5677532 89999999999999884321 11222221 256666666644433322 110 1 123
Q ss_pred cccEEeecCCCCCCc--hhhhc--ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc---ccCCC
Q 028049 79 ITQALHIEDCNSLPL--NLLHL--ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFA 151 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~--l~~~l--~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l 151 (214)
.++.|+++++.-... ++..+ ..+++|++|++.++.+..++.........+++|+.|+++++ ++...+ ....+
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWP 252 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhc
Confidence 566777766542221 11122 55666677666665444221100000013456666666654 444432 12335
Q ss_pred CCccEEeEecC
Q 028049 152 PNLKCLRILDC 162 (214)
Q Consensus 152 ~~L~~L~i~~C 162 (214)
++|++|+++++
T Consensus 253 ~~L~~L~Ls~N 263 (312)
T 1wwl_A 253 SQLNSLNLSFT 263 (312)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 56666666554
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.73 E-value=3e-08 Score=89.96 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=34.8
Q ss_pred CCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccchhhHH-------HhhhcccCCCCCccCeeecCc
Q 028049 128 MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIE-------VSEMMGELNLFSGLESLSLGN 200 (214)
Q Consensus 128 ~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~-------~~~~~~~~~~f~~L~~L~l~~ 200 (214)
+++|+.|+++++ +++.+| ..+++|+.|+++++ ++..++.. ...+.. +..++..+..+++|+.|++.+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~~--~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred CCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCcc--cccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 355666666554 555555 23456666666554 33333220 000000 012233456678888888887
Q ss_pred cc
Q 028049 201 AS 202 (214)
Q Consensus 201 cp 202 (214)
++
T Consensus 294 N~ 295 (622)
T 3g06_A 294 NP 295 (622)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 82
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.72 E-value=4.3e-08 Score=84.67 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=18.5
Q ss_pred CCCChhhhccCcccceEEccccCc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
+.++.+.++++++|++|++.++..
T Consensus 43 ~~~~~~~~~~l~~L~~L~L~~n~~ 66 (455)
T 3v47_A 43 AELNETSFSRLQDLQFLKVEQQTP 66 (455)
T ss_dssp CEECTTTTSSCTTCCEEECCCCST
T ss_pred CcCChhHhccCccccEEECcCCcc
Confidence 345444689999999999999865
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.69 E-value=2.6e-08 Score=82.45 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=106.9
Q ss_pred CCChhhhccC-----cccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchh----hhccCC
Q 028049 3 EIPQQLISSF-----SKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGV----ENFLKF 73 (214)
Q Consensus 3 ~iP~~~i~~L-----~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l----~~l~~~ 73 (214)
.+|. .++++ ++|++|++.+++..+. ..+.+..+++|+.|+++-...... ..+ ..
T Consensus 135 ~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~ 197 (312)
T 1wwl_A 135 TRDA-WLAELQQWLKPGLKVLSIAQAHSLNF---------------SCEQVRVFPALSTLDLSDNPELGERGLISAL-CP 197 (312)
T ss_dssp SSSS-HHHHHHTTCCTTCCEEEEESCSCCCC---------------CTTTCCCCSSCCEEECCSCTTCHHHHHHHHS-CT
T ss_pred chhH-HHHHHHHhhcCCCcEEEeeCCCCccc---------------hHHHhccCCCCCEEECCCCCcCcchHHHHHH-Hh
Confidence 4454 46666 9999999999987332 123466778999998875443221 111 11
Q ss_pred cchhccccEEeecCCCCCCchh----hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccC
Q 028049 74 PKLQTITQALHIEDCNSLPLNL----LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLV 149 (214)
Q Consensus 74 ~~l~~~l~~L~l~~c~~l~~l~----~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~ 149 (214)
. -.+.++.|+++++ .+..++ ..+..+++|++|+++++.+...... .....+++|+.|+++++ +++.+|...
T Consensus 198 ~-~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~ip~~~ 272 (312)
T 1wwl_A 198 L-KFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCDWPSQLNSLNLSFT-GLKQVPKGL 272 (312)
T ss_dssp T-SCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SCCCCCTTCCEEECTTS-CCSSCCSSC
T ss_pred c-cCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hhhhhcCCCCEEECCCC-ccChhhhhc
Confidence 1 2357899999987 445332 2235678999999998666654310 11124789999999987 788888532
Q ss_pred CCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 150 FAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 150 ~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
. ++|++|+++++ .++.++ .+..+++|++|++.+-+
T Consensus 273 ~-~~L~~L~Ls~N-~l~~~p----------------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 P-AKLSVLDLSYN-RLDRNP----------------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp C-SEEEEEECCSS-CCCSCC----------------CTTTSCEEEEEECTTCT
T ss_pred c-CCceEEECCCC-CCCCCh----------------hHhhCCCCCEEeccCCC
Confidence 3 89999999886 454442 35678999999998754
No 84
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.69 E-value=5.4e-10 Score=100.44 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=74.4
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR 158 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~ 158 (214)
.++.|+++++ .+..++. +..+++|+.|+++++.+..++... ..+++|+.|+++++ +++.+|.+..+++|+.|+
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDN-ALENVDGVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG----GGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEE
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhh----hcCCCCCEEECCCC-CCCCCcccCCCCCCcEEE
Confidence 4778888875 5566653 777888888888887777665433 35888999999875 778888777888899998
Q ss_pred EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccccccc
Q 028049 159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAY 207 (214)
Q Consensus 159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i 207 (214)
++++ .+..++. +..+..+++|+.|++++.+ +..+
T Consensus 515 Ls~N-~l~~~~~-------------p~~l~~l~~L~~L~L~~N~-l~~~ 548 (567)
T 1dce_A 515 LCNN-RLQQSAA-------------IQPLVSCPRLVLLNLQGNS-LCQE 548 (567)
T ss_dssp CCSS-CCCSSST-------------TGGGGGCTTCCEEECTTSG-GGGS
T ss_pred CCCC-CCCCCCC-------------cHHHhcCCCCCEEEecCCc-CCCC
Confidence 8875 4444420 1244567778888887764 4433
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.68 E-value=6.6e-08 Score=84.44 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=40.9
Q ss_pred ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEE
Q 028049 78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCL 157 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L 157 (214)
+.++.|+++++ .+..++ .+..+++|++|+++++.+..++. .+++|++|+++++ +++.+|.+..+++|++|
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~-------~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNN-QLEELPELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSS-CCSSCCCCTTCTTCCEE
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCC-------CcccccEEECcCC-cCCcCccccCCCCCCEE
Confidence 35666666654 333443 35566677777776655544321 1345666666654 45555544555556666
Q ss_pred eEecC
Q 028049 158 RILDC 162 (214)
Q Consensus 158 ~i~~C 162 (214)
+++++
T Consensus 201 ~l~~N 205 (454)
T 1jl5_A 201 YADNN 205 (454)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55554
No 86
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.67 E-value=6.5e-08 Score=76.27 Aligned_cols=134 Identities=12% Similarity=0.170 Sum_probs=90.9
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhh--hccCCcchhcc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE--NFLKFPKLQTI 79 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~--~l~~~~~l~~~ 79 (214)
+.||.+ +. ++|++|++.+++....+ .+.+..+++|+.|+++-.....+. .+. . .+.
T Consensus 24 ~~iP~~-l~--~~l~~L~l~~n~i~~i~---------------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~---~-l~~ 81 (220)
T 2v9t_B 24 TEIPTN-LP--ETITEIRLEQNTIKVIP---------------PGAFSPYKKLRRIDLSNNQISELAPDAFQ---G-LRS 81 (220)
T ss_dssp SSCCSS-CC--TTCCEEECCSSCCCEEC---------------TTSSTTCTTCCEEECCSSCCCEECTTTTT---T-CSS
T ss_pred CcCCCc-cC--cCCCEEECCCCcCCCcC---------------HhHhhCCCCCCEEECCCCcCCCcCHHHhh---C-CcC
Confidence 567765 43 68999999999873221 123556678888887755444331 121 1 256
Q ss_pred ccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccE
Q 028049 80 TQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKC 156 (214)
Q Consensus 80 l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~ 156 (214)
|+.|++++. .+..++ ..+..+++|+.|++.++.+..+.... ...+++|+.|+++++ +++.++. +..+++|++
T Consensus 82 L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 82 LNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDA---FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred CCEEECCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHH---cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCE
Confidence 889999875 455665 34677889999999987777664322 135789999999885 7787764 556889999
Q ss_pred EeEecC
Q 028049 157 LRILDC 162 (214)
Q Consensus 157 L~i~~C 162 (214)
|++.+.
T Consensus 157 L~L~~N 162 (220)
T 2v9t_B 157 MHLAQN 162 (220)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 998764
No 87
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.67 E-value=3.6e-08 Score=87.41 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=59.9
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCC-ccCcc-cCCCCCcc
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNV-KDLTW-LVFAPNLK 155 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L-~~lp~-~~~l~~L~ 155 (214)
.++.|+++++.-....+ ..+..+++|++|++.++.+....... ...+++|+.|++.+|.-- ..+|. +..+++|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT---TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh---hhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 45566665543211111 23445566666666664443322111 124667777777766322 13442 45567777
Q ss_pred EEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccCC
Q 028049 156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVH 209 (214)
Q Consensus 156 ~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~~ 209 (214)
+|++++|. +..+. +..+..+++|++|+++++ ++..+..
T Consensus 474 ~L~l~~n~-l~~~~--------------~~~~~~l~~L~~L~l~~n-~l~~~~~ 511 (570)
T 2z63_A 474 FLDLSQCQ-LEQLS--------------PTAFNSLSSLQVLNMASN-QLKSVPD 511 (570)
T ss_dssp EEECTTSC-CCEEC--------------TTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred EEECCCCc-cccCC--------------hhhhhcccCCCEEeCCCC-cCCCCCH
Confidence 77777663 22221 125567889999999887 4555544
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.66 E-value=8.7e-08 Score=83.67 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=77.7
Q ss_pred CCCChhhhccCcccceEEccccCccccccccccc---ccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGK---VLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQT 78 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~---~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~ 78 (214)
+.||. ++++++|++|++.+++..+.|...... .+....-..+.++..+++|+.|+++......++.. ..
T Consensus 144 ~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~------~~ 215 (454)
T 1jl5_A 144 EKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL------PL 215 (454)
T ss_dssp SSCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC------CT
T ss_pred CCCcc--cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC------cC
Confidence 45773 888999999999998875544322110 01111111133456667777777664443332222 24
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR 158 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~ 158 (214)
.++.|+++++ .+..++ .+..+++|++|+++++.+..++. .+++|+.|+++++ +++.+|.. +++|++|+
T Consensus 216 ~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~-------~~~~L~~L~l~~N-~l~~l~~~--~~~L~~L~ 283 (454)
T 1jl5_A 216 SLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLPD-------LPPSLEALNVRDN-YLTDLPEL--PQSLTFLD 283 (454)
T ss_dssp TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCS-------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEE
T ss_pred cccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCcccc-------cccccCEEECCCC-cccccCcc--cCcCCEEE
Confidence 6888888876 444554 46677788888887755554431 2345566665554 34444421 24444444
Q ss_pred Eec
Q 028049 159 ILD 161 (214)
Q Consensus 159 i~~ 161 (214)
+++
T Consensus 284 ls~ 286 (454)
T 1jl5_A 284 VSE 286 (454)
T ss_dssp CCS
T ss_pred CcC
Confidence 444
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.65 E-value=4.4e-08 Score=76.15 Aligned_cols=136 Identities=14% Similarity=0.152 Sum_probs=93.3
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..||.+ + .++|++|++.+++..+.+ .+.+..+++|+.|+++-.....++.-. + .-.+.++
T Consensus 20 ~~~p~~-~--~~~l~~L~l~~n~l~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~-~-~~l~~L~ 79 (208)
T 2o6s_A 20 TSVPTG-I--PAQTTYLDLETNSLKSLP---------------NGVFDELTSLTQLYLGGNKLQSLPNGV-F-NKLTSLT 79 (208)
T ss_dssp SSCCSC-C--CTTCSEEECCSSCCCCCC---------------TTTTTTCTTCSEEECCSSCCCCCCTTT-T-TTCTTCC
T ss_pred cCCCCC-C--CCCCcEEEcCCCccCcCC---------------hhhhcccccCcEEECCCCccCccChhh-c-CCCCCcC
Confidence 456654 2 468999999999873221 112456688888888754443332110 1 1135789
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~ 158 (214)
.|+++++ .+..++ ..+..+++|++|++.++.+..++... ...+++|+.|+++++ +++.++. +..+++|++|+
T Consensus 80 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 80 YLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV---FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred EEECCCC-cCCccCHhHhcCccCCCEEEcCCCcCcccCHhH---hccCCcCCEEECCCC-ccceeCHHHhccCCCccEEE
Confidence 9999886 455554 34678899999999987777664321 135899999999986 7787764 56789999999
Q ss_pred EecC
Q 028049 159 ILDC 162 (214)
Q Consensus 159 i~~C 162 (214)
+.++
T Consensus 155 l~~N 158 (208)
T 2o6s_A 155 LHDN 158 (208)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9885
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.62 E-value=3.9e-08 Score=81.23 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=105.6
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccC--CcchhccccEEeec
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLK--FPKLQTITQALHIE 86 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~--~~~l~~~l~~L~l~ 86 (214)
+..+++|++|++.+|+..+. ....+..+++|+.|+++.........+.. ...-.+.++.|+++
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAF---------------SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCC---------------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred hhhccCCCEEEeeCCCcchh---------------hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 46799999999999987321 12346677899999987554433211111 11123578999999
Q ss_pred CCCCCCchhh----hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecC
Q 028049 87 DCNSLPLNLL----HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDC 162 (214)
Q Consensus 87 ~c~~l~~l~~----~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C 162 (214)
++ +++.++. .+..+++|++|+++++.+..+.....+....+++|++|+++++ +++.+|... .++|++|+++++
T Consensus 206 ~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N 282 (310)
T 4glp_A 206 NT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSN 282 (310)
T ss_dssp SS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSC
T ss_pred CC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCC
Confidence 87 4555541 2467789999999997776652111111122479999999886 788888622 489999999886
Q ss_pred cccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 163 DDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 163 ~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
.+..++ ....+++|+.|++.+-+
T Consensus 283 -~l~~~~----------------~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 283 -RLNRAP----------------QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CCCSCC----------------CTTSCCCCSCEECSSTT
T ss_pred -cCCCCc----------------hhhhCCCccEEECcCCC
Confidence 344332 23567999999998754
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.61 E-value=9.1e-08 Score=84.24 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=72.4
Q ss_pred hccCcccceEEccccCcccccccccccc--cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeec
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKV--LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIE 86 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~--~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~ 86 (214)
++++++|++|++++|...+.+....... +....-..+ ....+++|+.|+++......+... .-.-.+.|+.|+++
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLK 152 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE-EECCCSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECT
T ss_pred cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC-CccccCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECC
Confidence 6788999999999987744432111000 000000000 012245666666654433332211 00113467777777
Q ss_pred CCCCCCch-hhhcc-cccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecC
Q 028049 87 DCNSLPLN-LLHLA-NMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDC 162 (214)
Q Consensus 87 ~c~~l~~l-~~~l~-~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C 162 (214)
++. +... +..+. .+++|++|+++++.+..++.. ..+++|+.|+++++ ++..+|. +..+++|+.|+++++
T Consensus 153 ~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 153 LNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp TSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred CCC-CCCcChHHHhhhCCcccEEecCCCcccccccc-----ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC
Confidence 653 3332 22332 566777777777555554311 13666666666664 4555543 445566666666653
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.61 E-value=1.2e-07 Score=86.04 Aligned_cols=26 Identities=12% Similarity=0.278 Sum_probs=20.4
Q ss_pred CCCCChhhhccCcccceEEccccCcc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYA 26 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~ 26 (214)
+..||.++++++++|++|++.+++..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQ 110 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred cCccChhhhccCCCCCEEECCCCccC
Confidence 35678777888888888888888763
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.59 E-value=2.4e-07 Score=84.04 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=8.5
Q ss_pred cccceEEccccCccc
Q 028049 13 SKLQVLRMLHCGYAH 27 (214)
Q Consensus 13 ~~Lq~L~l~~~~~~~ 27 (214)
++|++|++.+|....
T Consensus 61 ~~L~~L~L~~N~l~~ 75 (622)
T 3g06_A 61 AHITTLVIPDNNLTS 75 (622)
T ss_dssp TTCSEEEECSCCCSC
T ss_pred CCCcEEEecCCCCCC
Confidence 556666666665543
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.59 E-value=1.8e-07 Score=72.68 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=42.9
Q ss_pred ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049 78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL 154 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L 154 (214)
+.++.|+++++ .+..++ ..+..+++|++|+++++.+..++... ...+++|+.|+++++ +++.++. +..+++|
T Consensus 52 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 52 TSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV---FDKLTQLKELALNTN-QLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhH---hcCccCCCEEEcCCC-cCcccCHhHhccCCcC
Confidence 35666666653 333443 23455666666666665555443211 123566666666654 5555543 3456666
Q ss_pred cEEeEecC
Q 028049 155 KCLRILDC 162 (214)
Q Consensus 155 ~~L~i~~C 162 (214)
++|+++++
T Consensus 127 ~~L~l~~N 134 (208)
T 2o6s_A 127 KDLRLYQN 134 (208)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 66666664
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.56 E-value=4.6e-07 Score=84.72 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=13.6
Q ss_pred CCChhhhccCcccceEEccccCc
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
.|+++.++++++|++|++.+|+.
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcC
Confidence 34444466666666666666655
No 96
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.54 E-value=1.5e-07 Score=70.67 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=28.6
Q ss_pred cccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc---ccCCCCCccEEeEecC
Q 028049 98 LANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFAPNLKCLRILDC 162 (214)
Q Consensus 98 l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l~~L~~L~i~~C 162 (214)
+..+++|++|+++++.+....... ...+++|+.|++++| +++.++ .+..+++|++|+++++
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDML---AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHH---HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred hccCCCCCEEECcCCcCchHHHHH---HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC
Confidence 344455555555553333311000 012555666666554 455543 2344556666666554
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.48 E-value=1.9e-07 Score=78.92 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=93.4
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhcc-CCccCceeeEEecccchhhhccCCcchhccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIH-CLEQLNLITLSLHGSRGVENFLKFPKLQTIT 80 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~-~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l 80 (214)
+.||.+ +. +++++|++.+++..+.+ .+.+. .+.+|+.|+++-.....++.- .+.. .+.|
T Consensus 31 ~~iP~~-~~--~~l~~L~Ls~N~l~~l~---------------~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~-l~~L 90 (361)
T 2xot_A 31 PNVPQS-LP--SYTALLDLSHNNLSRLR---------------AEWTPTRLTNLHSLLLSHNHLNFISSE-AFVP-VPNL 90 (361)
T ss_dssp SSCCSS-CC--TTCSEEECCSSCCCEEC---------------TTSSSSCCTTCCEEECCSSCCCEECTT-TTTT-CTTC
T ss_pred CccCcc-CC--CCCCEEECCCCCCCccC---------------hhhhhhcccccCEEECCCCcCCccChh-hccC-CCCC
Confidence 467765 32 45889999999873321 11233 667888888765544443310 0111 2478
Q ss_pred cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-c----CCCCCc
Q 028049 81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-L----VFAPNL 154 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~----~~l~~L 154 (214)
+.|++++. .+..++ ..+..+++|+.|+++++.+..+.... ...+++|+.|+++++ +++.+|. . ..+++|
T Consensus 91 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 91 RYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA---FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTC
T ss_pred CEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHH---hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcC
Confidence 99999885 466665 45778889999999987777664322 235889999999986 8888875 2 358999
Q ss_pred cEEeEecCccccccc
Q 028049 155 KCLRILDCDDMEEII 169 (214)
Q Consensus 155 ~~L~i~~C~~l~~i~ 169 (214)
+.|++++. .+..++
T Consensus 166 ~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 166 MLLDLSSN-KLKKLP 179 (361)
T ss_dssp CEEECCSS-CCCCCC
T ss_pred CEEECCCC-CCCccC
Confidence 99999875 455443
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.47 E-value=2.2e-08 Score=85.14 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=14.5
Q ss_pred hccCcccceEEccccCc
Q 028049 9 ISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~ 25 (214)
+.++++|++|++++++.
T Consensus 90 l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HTTCTTCCEEECCSCCC
T ss_pred HhhCCcccEEECCCCcC
Confidence 47889999999999887
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.46 E-value=7.6e-08 Score=70.80 Aligned_cols=61 Identities=28% Similarity=0.459 Sum_probs=32.0
Q ss_pred hcccccccchhhccccccce-eecccccccCCCCCccEEeeecCcCCccCc---ccCCCCCccEEeEecC
Q 028049 97 HLANMEHLEKLFIEESNLED-WNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFAPNLKCLRILDC 162 (214)
Q Consensus 97 ~l~~l~~L~~L~i~~~~l~~-l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l~~L~~L~i~~C 162 (214)
.+..+++|++|+++++.+.. ++... ..+++|+.|+++++ +++.++ .+..+++|++|+++++
T Consensus 59 ~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 59 NLPKLNKLKKLELSDNRVSGGLEVLA----EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TCCCCTTCCEEECCSSCCCSCTHHHH----HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred hhhcCCCCCEEECCCCcccchHHHHh----hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence 34445556666665544443 21111 12566666666665 455542 2455666777777665
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.45 E-value=2.9e-07 Score=82.14 Aligned_cols=136 Identities=14% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
.+||.+ |. +++++|++++++....+ -..+..+++|+.|+++-..+..++.- .+.. .++|+
T Consensus 44 ~~vP~~-lp--~~~~~LdLs~N~i~~l~---------------~~~f~~l~~L~~L~Ls~N~i~~i~~~-~f~~-L~~L~ 103 (635)
T 4g8a_A 44 YKIPDN-LP--FSTKNLDLSFNPLRHLG---------------SYSFFSFPELQVLDLSRCEIQTIEDG-AYQS-LSHLS 103 (635)
T ss_dssp SSCCSS-SC--TTCCEEECTTSCCCEEC---------------TTTTTTCTTCCEEECTTCCCCEECTT-TTTT-CTTCC
T ss_pred CccCCC-CC--cCCCEEEeeCCCCCCCC---------------HHHHhCCCCCCEEECCCCcCCCcChh-HhcC-CCCCC
Confidence 356654 22 36788888887763221 12345567777777664433333210 0111 24677
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC--cc-cCCCCCccEE
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL--TW-LVFAPNLKCL 157 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l--p~-~~~l~~L~~L 157 (214)
.|+|+++ .++.++ ..+.++++|++|++.++++..++... ...+++|+.|+++++ +++.+ |. ...+++|++|
T Consensus 104 ~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 104 TLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp EEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEE
T ss_pred EEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh---hhcCcccCeeccccC-ccccCCCchhhccchhhhhh
Confidence 7888775 455555 44677777888887776666553221 134777888888775 45544 22 4457778888
Q ss_pred eEecC
Q 028049 158 RILDC 162 (214)
Q Consensus 158 ~i~~C 162 (214)
+++++
T Consensus 179 ~L~~N 183 (635)
T 4g8a_A 179 DLSSN 183 (635)
T ss_dssp ECCSS
T ss_pred cccCc
Confidence 77765
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.41 E-value=4.7e-07 Score=80.79 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=68.4
Q ss_pred ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049 78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL 154 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L 154 (214)
+.++.|+++++.....+. ..+..+++|++|+++++++..+.... ...+++|+.|+++++ +++.++. +..+++|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~---f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA---FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH---HcCCCCCCEEECCCC-cCCCCChhHHhCCCCC
Confidence 457778887765443322 34667778888888887777664322 135778888888875 6777753 5567888
Q ss_pred cEEeEecCcccccccccccchhhHHHhhhcccCCCC-CccCeeecCccc
Q 028049 155 KCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLF-SGLESLSLGNAS 202 (214)
Q Consensus 155 ~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f-~~L~~L~l~~cp 202 (214)
++|+++++ ++..++. ..+..+ ++|+.|++.+-|
T Consensus 545 ~~L~Ls~N-~l~~~~~--------------~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 545 QVLDYSLN-HIMTSKK--------------QELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTS-CCCBCCS--------------SCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCC-cCCCCCH--------------HHHHhhhCcCCEEEeeCCC
Confidence 88888775 3433322 134444 578888887644
No 102
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.41 E-value=9.4e-08 Score=72.49 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=77.4
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCc-cCceeeEEecccchhhhccCCcchhccccEEeecC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLE-QLNLITLSLHGSRGVENFLKFPKLQTITQALHIED 87 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~-~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~ 87 (214)
..+..+|++|++.++..... +.+..+. +|+.|+++......++.+.. .+.++.|++++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-----------------~~~~~~~~~L~~L~Ls~N~l~~~~~l~~----l~~L~~L~Ls~ 73 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-----------------ENLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVNN 73 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-----------------CCGGGGTTCCSEEECCSSCCCEECCCCC----CSSCCEEECCS
T ss_pred cCCcCCceEEEeeCCCCchh-----------------HHhhhcCCCCCEEECCCCCCCccccccc----CCCCCEEECCC
Confidence 45678899999999977221 1233333 77777776555444422221 24677788877
Q ss_pred CCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-----cCCCCCccEEeEec
Q 028049 88 CNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-----LVFAPNLKCLRILD 161 (214)
Q Consensus 88 c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-----~~~l~~L~~L~i~~ 161 (214)
+ .+..++ ..+..+++|++|+++++.+..++. ......+++|+.|.++++ .+..+|. +..+|+|+.|++++
T Consensus 74 N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 74 N-RICRIGEGLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp S-CCCEECSCHHHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred C-cccccCcchhhcCCCCCEEECCCCcCCcchh--hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCc
Confidence 5 345554 223566777888777765555432 001124777888888776 4455553 44567777777766
Q ss_pred Ccc
Q 028049 162 CDD 164 (214)
Q Consensus 162 C~~ 164 (214)
+..
T Consensus 150 n~~ 152 (176)
T 1a9n_A 150 VKL 152 (176)
T ss_dssp CCH
T ss_pred CCH
Confidence 543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.41 E-value=1e-06 Score=69.62 Aligned_cols=129 Identities=13% Similarity=0.107 Sum_probs=87.7
Q ss_pred ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCC
Q 028049 52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPK 130 (214)
Q Consensus 52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~ 130 (214)
.+|+.|+++......+..- .+.. .+.|+.|+++++ .+..++ ..+..+++|+.|+++++.+..++.... ..+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~-~~~~-l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPG-VFDS-LINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF---DRLVH 113 (229)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTT-CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred CCCCEEEcCCCccCccCHH-HhhC-ccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHh---Ccchh
Confidence 6778887765544433210 0111 256889999885 355555 446778899999998877776643221 35889
Q ss_pred ccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 131 LHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 131 L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
|+.|.++++ +++.+|. +..+++|++|+++++ ++..++. ..+..+++|+.|++.+-|
T Consensus 114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~--------------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPH--------------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCT--------------TTTTTCTTCCEEECTTSC
T ss_pred hCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCH--------------HHHhCCCCCCEEEeeCCC
Confidence 999999875 7888874 667899999999885 5554432 145667889999988755
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.40 E-value=2.1e-07 Score=69.76 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=91.2
Q ss_pred ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049 10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN 89 (214)
Q Consensus 10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~ 89 (214)
...++|++|++.+|.... ......+..+++|+.|+++-.....+..+ .. .++++.|+++++.
T Consensus 21 ~~~~~L~~L~l~~n~l~~--------------~~i~~~~~~l~~L~~L~l~~n~l~~~~~~---~~-l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSND--------------GKIEGLTAEFVNLEFLSLINVGLISVSNL---PK-LPKLKKLELSENR 82 (168)
T ss_dssp SCTTSCSEEECCSCBCBT--------------TBCSSCCGGGGGCCEEEEESSCCCCCSSC---CC-CSSCCEEEEESCC
T ss_pred CCcccCCEEECCCCCCCh--------------hhHHHHHHhCCCCCEEeCcCCCCCChhhh---cc-CCCCCEEECcCCc
Confidence 345889999999998730 00011245568899999886655544222 22 3578999999875
Q ss_pred CCCc-hhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-----cCCCCCccEEeEecCc
Q 028049 90 SLPL-NLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-----LVFAPNLKCLRILDCD 163 (214)
Q Consensus 90 ~l~~-l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-----~~~l~~L~~L~i~~C~ 163 (214)
- .. ++..+..+++|++|++.++.+..++.. .....+++|+.|+++++ .+..+|. +..+++|++|++.+|.
T Consensus 83 l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 83 I-FGGLDMLAEKLPNLTHLNLSGNKLKDISTL--EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp C-CSCCCHHHHHCTTCCEEECBSSSCCSSGGG--GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred C-chHHHHHHhhCCCCCEEeccCCccCcchhH--HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 3 33 444455688999999998777665320 11246899999999987 6677653 5678999999999985
Q ss_pred c
Q 028049 164 D 164 (214)
Q Consensus 164 ~ 164 (214)
.
T Consensus 159 ~ 159 (168)
T 2ell_A 159 D 159 (168)
T ss_dssp S
T ss_pred h
Confidence 4
No 105
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.38 E-value=4.9e-07 Score=84.52 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=84.7
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEeccc-chh-hhccCCcchhcc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGS-RGV-ENFLKFPKLQTI 79 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~-~~l-~~l~~~~~l~~~ 79 (214)
..||. -.++|++|+++++...+. ....+..+++|+.|+++.... ..+ +.. +.. .++
T Consensus 17 ~~vP~----lp~~l~~LdLs~N~i~~i---------------~~~~~~~l~~L~~LdLs~n~~~~~i~~~~--f~~-L~~ 74 (844)
T 3j0a_A 17 TQVPQ----VLNTTERLLLSFNYIRTV---------------TASSFPFLEQLQLLELGSQYTPLTIDKEA--FRN-LPN 74 (844)
T ss_dssp SCCCS----SCTTCCEEEEESCCCCEE---------------CSSSCSSCCSCSEEEECTTCCCCEECTTT--TSS-CTT
T ss_pred CCCCC----CCCCcCEEECCCCcCCcc---------------ChhHCcccccCeEEeCCCCCCccccCHHH--hcC-CCC
Confidence 34665 357889999999877221 123466778888888864321 111 110 111 246
Q ss_pred ccEEeecCCCCCCch-hhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc---ccCCCCCcc
Q 028049 80 TQALHIEDCNSLPLN-LLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFAPNLK 155 (214)
Q Consensus 80 l~~L~l~~c~~l~~l-~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l~~L~ 155 (214)
|+.|+++++. +..+ +..+..+++|++|+++++.+...... .+....+++|+.|+++++ ++..++ .+..+++|+
T Consensus 75 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 75 LRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCC
T ss_pred CCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCC-cccccccchhHhhCCCCC
Confidence 8888888764 3444 35677888899998888665542111 011235888999999886 555552 256788899
Q ss_pred EEeEecC
Q 028049 156 CLRILDC 162 (214)
Q Consensus 156 ~L~i~~C 162 (214)
+|+++++
T Consensus 152 ~L~Ls~N 158 (844)
T 3j0a_A 152 SIDFSSN 158 (844)
T ss_dssp EEEEESS
T ss_pred EEECCCC
Confidence 9998885
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.37 E-value=2e-07 Score=78.68 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=95.0
Q ss_pred CCCChhhhc-cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049 2 SEIPQQLIS-SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT 80 (214)
Q Consensus 2 ~~iP~~~i~-~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l 80 (214)
..+|.+.+. ++++|++|++.+++....+ .+.+..+++|+.|+++......+..- .+.. ...|
T Consensus 52 ~~l~~~~~~~~l~~L~~L~L~~N~i~~i~---------------~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~-l~~L 114 (361)
T 2xot_A 52 SRLRAEWTPTRLTNLHSLLLSHNHLNFIS---------------SEAFVPVPNLRYLDLSSNHLHTLDEF-LFSD-LQAL 114 (361)
T ss_dssp CEECTTSSSSCCTTCCEEECCSSCCCEEC---------------TTTTTTCTTCCEEECCSSCCCEECTT-TTTT-CTTC
T ss_pred CccChhhhhhcccccCEEECCCCcCCccC---------------hhhccCCCCCCEEECCCCcCCcCCHH-HhCC-CcCC
Confidence 456666666 9999999999999873321 12356678888988876554443321 0111 3578
Q ss_pred cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCC--cc
Q 028049 81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPN--LK 155 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~--L~ 155 (214)
+.|+++++ .+..+. ..+..+++|++|++.++.+..++.........+++|+.|++++. +++.+|. +..+++ ++
T Consensus 115 ~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 115 EVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHT
T ss_pred CEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcc
Confidence 99999886 445543 56788899999999998887765432111135899999999985 7888874 445665 47
Q ss_pred EEeEec
Q 028049 156 CLRILD 161 (214)
Q Consensus 156 ~L~i~~ 161 (214)
.|++.+
T Consensus 193 ~l~l~~ 198 (361)
T 2xot_A 193 GLYLHN 198 (361)
T ss_dssp TEECCS
T ss_pred eEEecC
Confidence 788876
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.37 E-value=8.9e-08 Score=81.32 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.7
Q ss_pred hccCcccceEEccccCc
Q 028049 9 ISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~ 25 (214)
+.++++|++|++.+|..
T Consensus 56 l~~~~~L~~L~Ls~~~~ 72 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFT 72 (386)
T ss_dssp TTTCTTCCEEECCSCCT
T ss_pred HHhCCCccEEeCccccc
Confidence 67899999999999854
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.36 E-value=1.6e-06 Score=68.13 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=87.6
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
+.||.+ + ...+++|++.+++....+ . -+.+..+++|+.|+++-.....++.- .+.. .+.++
T Consensus 24 ~~iP~~-~--~~~~~~L~L~~N~l~~~~-----------~---~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~-l~~L~ 84 (220)
T 2v70_A 24 NKIPEH-I--PQYTAELRLNNNEFTVLE-----------A---TGIFKKLPQLRKINFSNNKITDIEEG-AFEG-ASGVN 84 (220)
T ss_dssp SSCCSC-C--CTTCSEEECCSSCCCEEC-----------C---CCCGGGCTTCCEEECCSSCCCEECTT-TTTT-CTTCC
T ss_pred ccCccC-C--CCCCCEEEcCCCcCCccC-----------c---hhhhccCCCCCEEECCCCcCCEECHH-HhCC-CCCCC
Confidence 456764 3 235688888888773220 0 01245567788888765444433310 0111 25688
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR 158 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~ 158 (214)
.|++++. .+..++ ..+..+++|++|+++++.+..+.... ...+++|+.|+++++ +++.++. +..+++|++|+
T Consensus 85 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 85 EILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS---FIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp EEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS---STTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEE
T ss_pred EEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH---cCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEE
Confidence 8999875 445544 45778889999999887777663221 135789999999885 7777742 66788999999
Q ss_pred EecC
Q 028049 159 ILDC 162 (214)
Q Consensus 159 i~~C 162 (214)
+.+.
T Consensus 160 L~~N 163 (220)
T 2v70_A 160 LLAN 163 (220)
T ss_dssp CCSC
T ss_pred ecCc
Confidence 8774
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.36 E-value=9.4e-07 Score=79.41 Aligned_cols=156 Identities=12% Similarity=0.117 Sum_probs=84.6
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
..||.+ + .++|++|+++++.....| ..+++|+.|+++......++.+ ...|+
T Consensus 72 ~~lp~~-l--~~~L~~L~Ls~N~l~~ip-------------------~~l~~L~~L~Ls~N~l~~ip~l------~~~L~ 123 (571)
T 3cvr_A 72 SSLPDN-L--PPQITVLEITQNALISLP-------------------ELPASLEYLDACDNRLSTLPEL------PASLK 123 (571)
T ss_dssp SCCCSC-C--CTTCSEEECCSSCCSCCC-------------------CCCTTCCEEECCSSCCSCCCCC------CTTCC
T ss_pred CccCHh-H--cCCCCEEECcCCCCcccc-------------------cccCCCCEEEccCCCCCCcchh------hcCCC
Confidence 457765 3 378999999999873221 2246677777665444443331 12677
Q ss_pred EEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049 82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD 161 (214)
Q Consensus 82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~ 161 (214)
.|+++++ .+..++. .+++|+.|+++++.+..++. .+++|+.|+++++ +++.+|.+ .++|+.|++++
T Consensus 124 ~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N-~L~~lp~l--~~~L~~L~Ls~ 189 (571)
T 3cvr_A 124 HLDVDNN-QLTMLPE---LPALLEYINADNNQLTMLPE-------LPTSLEVLSVRNN-QLTFLPEL--PESLEALDVST 189 (571)
T ss_dssp EEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCS
T ss_pred EEECCCC-cCCCCCC---cCccccEEeCCCCccCcCCC-------cCCCcCEEECCCC-CCCCcchh--hCCCCEEECcC
Confidence 7777664 3344432 45667777776655554431 2556666666665 45555551 25666666665
Q ss_pred Ccccccccccccchhh-------HH-------HhhhcccCCCCCccCeeecCccc
Q 028049 162 CDDMEEIISVENFEKL-------IE-------VSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 162 C~~l~~i~~~~~~~~l-------~~-------~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
+ .+..++. -.. .+ .. +..++..+..+++|+.|++.+.+
T Consensus 190 N-~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 190 N-LLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp S-CCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred C-CCCchhh-HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 4 3333322 000 11 10 01223344457788888887765
No 110
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.35 E-value=1.4e-06 Score=77.53 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=94.9
Q ss_pred CChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch-hhhccCCcchhccccE
Q 028049 4 IPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG-VENFLKFPKLQTITQA 82 (214)
Q Consensus 4 iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~l~~ 82 (214)
+|. .++++++|++|++.+++..+.+ .....+..+++|+.|+++-..... ++.-. +. ..+.++.
T Consensus 369 ~~~-~~~~l~~L~~L~L~~N~l~~~~-------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~-~l~~L~~ 432 (562)
T 3a79_B 369 VFQ-GCSTLKRLQTLILQRNGLKNFF-------------KVALMTKNMSSLETLDVSLNSLNSHAYDRT-CA-WAESILV 432 (562)
T ss_dssp TTT-TCCSCSSCCEEECCSSCCCBTT-------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CC-CCTTCCE
T ss_pred hhh-hhcccCCCCEEECCCCCcCCcc-------------cchhhhcCCCCCCEEECCCCcCCCccChhh-hc-CcccCCE
Confidence 454 4899999999999999873321 112346677889998887544433 32110 11 1357899
Q ss_pred EeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEe
Q 028049 83 LHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRIL 160 (214)
Q Consensus 83 L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~ 160 (214)
|+++++.--...+..++ ++|+.|+++++.+..++... ..+++|+.|+++++ +++.+|. +..+++|++|+++
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~----~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV----THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT----TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh----cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEec
Confidence 99998753222222222 68999999998887765433 25899999999986 7888985 6678999999998
Q ss_pred cCc
Q 028049 161 DCD 163 (214)
Q Consensus 161 ~C~ 163 (214)
+.+
T Consensus 506 ~N~ 508 (562)
T 3a79_B 506 DNP 508 (562)
T ss_dssp SCC
T ss_pred CCC
Confidence 863
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.34 E-value=6.6e-07 Score=70.40 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=83.1
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT 80 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l 80 (214)
++.||.+.+.++++|++|++.+++.... ..+.+..+++|+.|+++......++.-. +. -.+.|
T Consensus 44 i~~i~~~~~~~l~~L~~L~Ls~N~i~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-f~-~l~~L 106 (220)
T 2v9t_B 44 IKVIPPGAFSPYKKLRRIDLSNNQISEL---------------APDAFQGLRSLNSLVLYGNKITELPKSL-FE-GLFSL 106 (220)
T ss_dssp CCEECTTSSTTCTTCCEEECCSSCCCEE---------------CTTTTTTCSSCCEEECCSSCCCCCCTTT-TT-TCTTC
T ss_pred CCCcCHhHhhCCCCCCEEECCCCcCCCc---------------CHHHhhCCcCCCEEECCCCcCCccCHhH-cc-CCCCC
Confidence 3567777799999999999999987321 1234667788999988766555443211 11 13578
Q ss_pred cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049 81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC 139 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C 139 (214)
+.|++++. .+..+. ..+..+++|+.|++.++.+..+.... ...+++|+.|++.+.
T Consensus 107 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 107 QLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT---FSPLRAIQTMHLAQN 162 (220)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---TTTCTTCCEEECCSS
T ss_pred CEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH---HhCCCCCCEEEeCCC
Confidence 99999885 445553 56778899999999998887765332 235889999999864
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.30 E-value=2.2e-08 Score=77.49 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=9.6
Q ss_pred hccCcccceEEccccCc
Q 028049 9 ISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~ 25 (214)
++++++|++|++.+++.
T Consensus 44 ~~~l~~L~~L~ls~n~l 60 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNI 60 (198)
T ss_dssp HHHTTTCSEEECSEEEE
T ss_pred HhcCCCCCEEECCCCCC
Confidence 55555555555555544
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.29 E-value=5.2e-07 Score=80.37 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=76.2
Q ss_pred hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccc--hhhhccCCcchhccccEEee
Q 028049 8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSR--GVENFLKFPKLQTITQALHI 85 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~l~~L~l 85 (214)
++..+++|++|++.+|... ......-+..+++|+.|++. .... .++.+. .-.++|+.|++
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~--------------~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---~~~~~L~~L~L 349 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLE--------------TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA---QYCKQLKRLRI 349 (592)
T ss_dssp GGGGGGGCCEEEETTCCCC--------------HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH---HHCTTCCEEEE
T ss_pred HHhhcCCCcEEecCCCcCC--------------HHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH---HhCCCCCEEEe
Confidence 3567778888888887641 11112235667888888886 2221 122221 11246889999
Q ss_pred cC----------CCCCCchh--hhcccccccchhhccccccceeecccccccCCCCCccEEeeec---CcCCccCcc---
Q 028049 86 ED----------CNSLPLNL--LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWN---CSNVKDLTW--- 147 (214)
Q Consensus 86 ~~----------c~~l~~l~--~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~---C~~L~~lp~--- 147 (214)
++ |..+.... .....+++|++|+++.+++..-..... ...+++|++|.+.+ |+++...|.
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 85 77765432 223446788888874444432111000 11367788888873 556665421
Q ss_pred ----cCCCCCccEEeEecCc
Q 028049 148 ----LVFAPNLKCLRILDCD 163 (214)
Q Consensus 148 ----~~~l~~L~~L~i~~C~ 163 (214)
...+++|++|++++|.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHhCCCCCEEEEecCC
Confidence 2346778888876654
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.29 E-value=4.8e-07 Score=68.50 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=90.2
Q ss_pred ccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCC
Q 028049 48 IHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK 127 (214)
Q Consensus 48 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~ 127 (214)
.....+|+.|+++......++.+ ....+.++.|+++++ .+..+ ..+..+++|++|+++++.+..++.... ..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~---~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD---QA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH---HH
T ss_pred cCCcCCceEEEeeCCCCchhHHh---hhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchh---hc
Confidence 34456788887765544444332 233447999999886 45555 467788899999999977877653221 24
Q ss_pred CCCccEEeeecCcCCccCcc---cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 128 MPKLHSVLIWNCSNVKDLTW---LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 128 ~~~L~~L~I~~C~~L~~lp~---~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
+++|+.|+++++ ++..+|. +..+++|+.|++++++ +..++... . ..+..+++|+.|++.+++
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~---~--------~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYR---L--------YVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHH---H--------HHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHH---H--------HHHHHCCccceeCCCcCC
Confidence 899999999986 6777763 5678999999999874 22232100 0 013457888888887765
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.28 E-value=9e-08 Score=85.25 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=49.6
Q ss_pred CChhhhccCcccceEEccccCccc-c---cccccccccchhhHhhhhhc-cCCccCceeeEEecccch--hhhccCCcch
Q 028049 4 IPQQLISSFSKLQVLRMLHCGYAH-R---SIVEEGKVLSADAESLMKEI-HCLEQLNLITLSLHGSRG--VENFLKFPKL 76 (214)
Q Consensus 4 iP~~~i~~L~~Lq~L~l~~~~~~~-~---~~~~~~~~~~~~~~~~l~eL-~~L~~L~~L~i~~~~~~~--l~~l~~~~~l 76 (214)
.|..++.++++|++|++.+|.... . |..|... ....+..+ ..+++|+.|+++...... +..+. .-
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-----~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~---~~ 128 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGY-----VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA---KS 128 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCB-----CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH---HH
T ss_pred CHHHHHhhCCCceEEeccCCCchhhcccccccccch-----hhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH---Hh
Confidence 456677889999999999986411 0 1111100 00111221 234566676665332211 11221 01
Q ss_pred hccccEEeecCCCCCCc--hhhhcccccccchhhccc
Q 028049 77 QTITQALHIEDCNSLPL--NLLHLANMEHLEKLFIEE 111 (214)
Q Consensus 77 ~~~l~~L~l~~c~~l~~--l~~~l~~l~~L~~L~i~~ 111 (214)
.++++.|++++|..+.. +......+++|++|++.+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 165 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTT
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcC
Confidence 24677777777755433 222233556677777665
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.27 E-value=1.2e-07 Score=84.42 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=78.1
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhcc-CCccCceeeEEec-ccc--hhhhccCCcchhccccEEe
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIH-CLEQLNLITLSLH-GSR--GVENFLKFPKLQTITQALH 84 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~-~L~~L~~L~i~~~-~~~--~l~~l~~~~~l~~~l~~L~ 84 (214)
..++++|++|++++|...+ ..+..+. .+++|+.|++... ... .++.+. .-.++|+.|+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~---------------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~---~~~~~L~~L~ 162 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTD---------------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA---ATCRNLKELD 162 (594)
T ss_dssp HHHCTTCCEEEEESCBCCH---------------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHH---HHCTTCCEEE
T ss_pred HHhCCCCCeEEeeCcEEcH---------------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHH---HhCCCCCEEe
Confidence 3578889999999887621 1223332 3567777777532 111 133332 1135688888
Q ss_pred ecCCCCCCc-----hhhhcccccccchhhccccccceeecc-cccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEE
Q 028049 85 IEDCNSLPL-----NLLHLANMEHLEKLFIEESNLEDWNVD-CAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCL 157 (214)
Q Consensus 85 l~~c~~l~~-----l~~~l~~l~~L~~L~i~~~~l~~l~~~-~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L 157 (214)
+++|. +.. +......+++|++|+++++. ..+... ...-...+++|++|++.+|..+..++. +..+++|++|
T Consensus 163 L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 163 LRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp CTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred CcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 88875 221 21122356688888887722 111100 000012368899999988877776653 5567888888
Q ss_pred eEecCcc
Q 028049 158 RILDCDD 164 (214)
Q Consensus 158 ~i~~C~~ 164 (214)
.+.+|..
T Consensus 241 ~l~~~~~ 247 (594)
T 2p1m_B 241 GTGGYTA 247 (594)
T ss_dssp ECSBCCC
T ss_pred ccccccC
Confidence 8877653
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.22 E-value=5.4e-06 Score=62.55 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=44.9
Q ss_pred ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049 78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL 154 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L 154 (214)
+.++.|+++++ .+..++ ..+..+++|+.|+++++.+..++.... ..+++|+.|+++++ +++.+|. +..+++|
T Consensus 52 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 52 TQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF---DKLTQLKELALDTN-QLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred ccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHh---hCCcccCEEECcCC-cceEeCHHHhcCCccc
Confidence 45666666654 344443 234556666777666655554432211 23566777777664 5666654 3446667
Q ss_pred cEEeEecC
Q 028049 155 KCLRILDC 162 (214)
Q Consensus 155 ~~L~i~~C 162 (214)
++|++.+.
T Consensus 127 ~~L~l~~N 134 (177)
T 2o6r_A 127 QKIWLHTN 134 (177)
T ss_dssp CEEECCSS
T ss_pred CEEEecCC
Confidence 77766654
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.22 E-value=2.4e-07 Score=82.56 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=17.3
Q ss_pred CCChhhhccCcccceEEccccCc
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
..|..++.++++|+.|++.+|..
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~ 85 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPR 85 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCG
T ss_pred cChHHHHHhCCCCeEEEecCCcc
Confidence 34566678888899999888754
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.20 E-value=1.5e-06 Score=63.78 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=74.9
Q ss_pred ccccEEeecCCCCCC--chhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCcc-Ccc-cCCCCC
Q 028049 78 TITQALHIEDCNSLP--LNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD-LTW-LVFAPN 153 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~--~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~-lp~-~~~l~~ 153 (214)
+.++.|+++++. +. .++..+..+++|+.|++.++.+..+ . ....+++|+.|+++++ ++.. +|. ...+++
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI-A----NLPKLNKLKKLELSDN-RVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC-T----TCCCCTTCCEEECCSS-CCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc-h----hhhcCCCCCEEECCCC-cccchHHHHhhhCCC
Confidence 568888888874 33 4544567788999999998767655 1 1246899999999987 5666 664 445899
Q ss_pred ccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccccccc
Q 028049 154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAY 207 (214)
Q Consensus 154 L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i 207 (214)
|++|+++++. +..+.. +..+..+++|++|++++++ +..+
T Consensus 90 L~~L~ls~N~-i~~~~~-------------~~~~~~l~~L~~L~l~~N~-l~~~ 128 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLST-------------IEPLKKLENLKSLDLFNCE-VTNL 128 (149)
T ss_dssp CCEEECTTSC-CCSHHH-------------HGGGGGCTTCCEEECTTCG-GGGS
T ss_pred CCEEECCCCc-CCChHH-------------HHHHhhCCCCCEEeCcCCc-ccch
Confidence 9999999874 443321 0144567788888887763 4443
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.18 E-value=2.4e-06 Score=67.16 Aligned_cols=114 Identities=8% Similarity=0.083 Sum_probs=78.6
Q ss_pred ChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEe
Q 028049 5 PQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALH 84 (214)
Q Consensus 5 P~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~ 84 (214)
|.+++.++++|++|++.+++..+. . .+.+..+++|+.|+++......+..-. +. -.+.|+.|+
T Consensus 49 ~~~~~~~l~~L~~L~L~~N~i~~i------------~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~-~l~~L~~L~ 111 (220)
T 2v70_A 49 ATGIFKKLPQLRKINFSNNKITDI------------E---EGAFEGASGVNEILLTSNRLENVQHKM-FK-GLESLKTLM 111 (220)
T ss_dssp CCCCGGGCTTCCEEECCSSCCCEE------------C---TTTTTTCTTCCEEECCSSCCCCCCGGG-GT-TCSSCCEEE
T ss_pred chhhhccCCCCCEEECCCCcCCEE------------C---HHHhCCCCCCCEEECCCCccCccCHhH-hc-CCcCCCEEE
Confidence 456689999999999999987322 1 123566788999888755544433210 11 135789999
Q ss_pred ecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049 85 IEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC 139 (214)
Q Consensus 85 l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C 139 (214)
+++. .+..+. ..+..+++|+.|++.++.+..+.... ...+++|+.|++.+.
T Consensus 112 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 112 LRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA---FDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT---TTTCTTCCEEECCSC
T ss_pred CCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHH---hcCCCCCCEEEecCc
Confidence 9885 445543 56778899999999997777764322 235889999999864
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.14 E-value=1.1e-05 Score=62.20 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=55.5
Q ss_pred ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCC
Q 028049 52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPK 130 (214)
Q Consensus 52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~ 130 (214)
++|+.|+++......++..+ .-...++.|++++. .+..++ ..+..+++|++|+++++.+..+.... ...+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~---~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~---f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKEL---SNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT---FDGLKS 103 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGG---GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT---TTTCTT
T ss_pred CCCCEEECCCCcCchhHHHh---hcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHH---hCCCCC
Confidence 35666665544333332111 11245677777664 334443 34566677777777766665554221 124667
Q ss_pred ccEEeeecCcCCccCcc--cCCCCCccEEeEec
Q 028049 131 LHSVLIWNCSNVKDLTW--LVFAPNLKCLRILD 161 (214)
Q Consensus 131 L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~ 161 (214)
|+.|+++++ +++.+|. +..+++|+.|++.+
T Consensus 104 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 104 LRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 777777764 5666654 44566777777655
No 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.13 E-value=5.3e-07 Score=77.82 Aligned_cols=95 Identities=20% Similarity=0.340 Sum_probs=55.5
Q ss_pred hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccC-CcchhccccEEe
Q 028049 8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLK-FPKLQTITQALH 84 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~-~~~l~~~l~~L~ 84 (214)
++..+++|++|++.+|+..+ .........+..+++|+.|+++...... .+.+.. .......++.|+
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~-----------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTE-----------ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCH-----------HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred HHhhcCCccEEEccCCCCCH-----------HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEE
Confidence 36788899999999998621 1111223345666788888876443322 222221 111111588888
Q ss_pred ecCCCCCC-----chhhhcccccccchhhcccccc
Q 028049 85 IEDCNSLP-----LNLLHLANMEHLEKLFIEESNL 114 (214)
Q Consensus 85 l~~c~~l~-----~l~~~l~~l~~L~~L~i~~~~l 114 (214)
+++|. +. .++..+..+++|++|+++++.+
T Consensus 92 L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 92 LQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp CTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred ccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 88874 33 2234567777888888877434
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.10 E-value=9.4e-06 Score=72.90 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=86.4
Q ss_pred hccCc-----ccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEE
Q 028049 9 ISSFS-----KLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQAL 83 (214)
Q Consensus 9 i~~L~-----~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L 83 (214)
+.+++ +|++|++.++...+.|. .+ .++|+.|+++-.....++ ...++++.|
T Consensus 50 ~~~l~~C~~~~L~~L~Ls~n~L~~lp~----------------~l--~~~L~~L~Ls~N~l~~ip------~~l~~L~~L 105 (571)
T 3cvr_A 50 VSLLKECLINQFSELQLNRLNLSSLPD----------------NL--PPQITVLEITQNALISLP------ELPASLEYL 105 (571)
T ss_dssp HHHHHHHHHTTCSEEECCSSCCSCCCS----------------CC--CTTCSEEECCSSCCSCCC------CCCTTCCEE
T ss_pred hhhccccccCCccEEEeCCCCCCccCH----------------hH--cCCCCEEECcCCCCcccc------cccCCCCEE
Confidence 55555 99999999998743220 11 257888888755544443 234689999
Q ss_pred eecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCc
Q 028049 84 HIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCD 163 (214)
Q Consensus 84 ~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~ 163 (214)
+++++ .+..++. +.. +|++|+++++.+..++. .+++|+.|+++++ +++.+|. .+++|++|+++++.
T Consensus 106 ~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 106 DACDN-RLSTLPE-LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ 171 (571)
T ss_dssp ECCSS-CCSCCCC-CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC
T ss_pred EccCC-CCCCcch-hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC
Confidence 99886 5555543 443 89999999977777642 4789999999986 7888876 57899999999874
Q ss_pred ccccc
Q 028049 164 DMEEI 168 (214)
Q Consensus 164 ~l~~i 168 (214)
+..+
T Consensus 172 -L~~l 175 (571)
T 3cvr_A 172 -LTFL 175 (571)
T ss_dssp -CSCC
T ss_pred -CCCc
Confidence 4433
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.08 E-value=6.4e-06 Score=75.94 Aligned_cols=102 Identities=14% Similarity=0.201 Sum_probs=55.6
Q ss_pred cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEE
Q 028049 79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCL 157 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L 157 (214)
.++.|+|+++. +..++..+..+++|++|+++++.+..++... ..+++|+.|+++++ +++.+|. +..+++|++|
T Consensus 225 ~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 225 LWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEI----KNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG----GGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEE
T ss_pred CCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhh----hCCCCCCEEeCcCC-cCCccChhhcCCCCCCEE
Confidence 45666666543 3344433445566666666665555444222 23666666666664 4556653 4556666666
Q ss_pred eEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 158 RILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 158 ~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
+++++ .+..++. .+..+++|+.|+|++.+
T Consensus 299 ~L~~N-~l~~lp~---------------~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 299 YFFDN-MVTTLPW---------------EFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ECCSS-CCCCCCS---------------STTSCTTCCCEECTTSC
T ss_pred ECCCC-CCCccCh---------------hhhcCCCccEEeCCCCc
Confidence 66665 3333322 34555666666666553
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=5.7e-06 Score=74.21 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=81.9
Q ss_pred ccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCc
Q 028049 14 KLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPL 93 (214)
Q Consensus 14 ~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~ 93 (214)
.|++|++.++...+. ..+..+++|+.|+++......++.-+ .-.++|+.|++++. .+..
T Consensus 442 ~L~~L~Ls~n~l~~l-----------------p~~~~l~~L~~L~Ls~N~l~~lp~~~---~~l~~L~~L~Ls~N-~l~~ 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-----------------CHLEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQASDN-ALEN 500 (567)
T ss_dssp TCSEEECTTSCCSSC-----------------CCGGGGTTCCEEECCSSCCCCCCGGG---GGCTTCCEEECCSS-CCCC
T ss_pred CceEEEecCCCCCCC-----------------cCccccccCcEeecCcccccccchhh---hcCCCCCEEECCCC-CCCC
Confidence 588999999987322 12556678888888766555443221 12357899999875 5566
Q ss_pred hhhhcccccccchhhccccccceee--cccccccCCCCCccEEeeecCcCCccCcc-c----CCCCCccEEe
Q 028049 94 NLLHLANMEHLEKLFIEESNLEDWN--VDCAGEVQKMPKLHSVLIWNCSNVKDLTW-L----VFAPNLKCLR 158 (214)
Q Consensus 94 l~~~l~~l~~L~~L~i~~~~l~~l~--~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~----~~l~~L~~L~ 158 (214)
++ .+..+++|+.|+++++.+..+. ... ..+++|+.|+++++ .+..+|. . ..+|+|+.|+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l----~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPL----VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGG----GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH----hcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 65 6788899999999987777662 222 35899999999986 6776654 1 1278888874
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.95 E-value=1.6e-05 Score=61.20 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=77.7
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT 80 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l 80 (214)
++.||.+ +. ++|++|++.++..... .+.+..+++|+.|+++......++.- .+.. ...|
T Consensus 22 l~~ip~~-~~--~~l~~L~L~~n~i~~i----------------p~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~-l~~L 80 (193)
T 2wfh_A 22 LKVLPKG-IP--RDVTELYLDGNQFTLV----------------PKELSNYKHLTLIDLSNNRISTLSNQ-SFSN-MTQL 80 (193)
T ss_dssp CSSCCSC-CC--TTCCEEECCSSCCCSC----------------CGGGGGCTTCCEEECCSSCCCCCCTT-TTTT-CTTC
T ss_pred CCcCCCC-CC--CCCCEEECCCCcCchh----------------HHHhhcccCCCEEECCCCcCCEeCHh-HccC-CCCC
Confidence 3567875 33 6899999999987322 12456678888988876555444321 0111 2578
Q ss_pred cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049 81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC 139 (214)
Q Consensus 81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C 139 (214)
+.|++++. .+..++ ..+..+++|+.|++.++.+..++... ...+++|+.|++.+.
T Consensus 81 ~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 81 LTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA---FNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT---TTTCTTCCEEECCSS
T ss_pred CEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh---hhcCccccEEEeCCC
Confidence 99999885 456655 45788899999999998787765322 135889999999763
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.94 E-value=2.8e-05 Score=59.61 Aligned_cols=104 Identities=10% Similarity=0.083 Sum_probs=64.5
Q ss_pred cCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCc
Q 028049 53 QLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKL 131 (214)
Q Consensus 53 ~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L 131 (214)
+++.|+++-.....+..-..+ .-.+.++.|++++. .+..+. ..+..+++|++|+++++.+..+....- ..+++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLF-GRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMF---LGLHQL 104 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSG-GGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS---TTCTTC
T ss_pred CCCEEECCCCcCCccCCcccc-ccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh---cCCCCC
Confidence 666666654433332210001 12346888888775 444443 456778888888888877776643211 347888
Q ss_pred cEEeeecCcCCccC-cc-cCCCCCccEEeEecC
Q 028049 132 HSVLIWNCSNVKDL-TW-LVFAPNLKCLRILDC 162 (214)
Q Consensus 132 ~~L~I~~C~~L~~l-p~-~~~l~~L~~L~i~~C 162 (214)
+.|+++++ +++.+ |. +..+++|++|++++.
T Consensus 105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCC
Confidence 88888875 66665 32 556788888888764
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.94 E-value=1.8e-06 Score=72.72 Aligned_cols=96 Identities=10% Similarity=0.066 Sum_probs=45.7
Q ss_pred hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCc-cCceeeEEecccchh--hhccCC-cchhccccEE
Q 028049 8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLE-QLNLITLSLHGSRGV--ENFLKF-PKLQTITQAL 83 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~-~L~~L~i~~~~~~~l--~~l~~~-~~l~~~l~~L 83 (214)
.+...++|++|++++|...+. ......+.+..++ +|+.|+++-...... ..+... ....+.++.|
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSI-----------STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGS-----------CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHhCCCCceEEEccCCCCChH-----------HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 355666688888888876321 1122234455555 677776654433221 111110 0001456677
Q ss_pred eecCCCCCCchh-----hhcccc-cccchhhccccccc
Q 028049 84 HIEDCNSLPLNL-----LHLANM-EHLEKLFIEESNLE 115 (214)
Q Consensus 84 ~l~~c~~l~~l~-----~~l~~l-~~L~~L~i~~~~l~ 115 (214)
+++++. +.... ..+..+ ++|++|+++++.+.
T Consensus 86 ~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 86 NLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp ECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 776654 22211 112333 56666666654443
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.92 E-value=5.2e-06 Score=69.87 Aligned_cols=13 Identities=8% Similarity=-0.015 Sum_probs=10.6
Q ss_pred cccceEEccccCc
Q 028049 13 SKLQVLRMLHCGY 25 (214)
Q Consensus 13 ~~Lq~L~l~~~~~ 25 (214)
++|++|++.+|+.
T Consensus 80 ~~L~~L~Ls~n~l 92 (362)
T 3goz_A 80 ANVTSLNLSGNFL 92 (362)
T ss_dssp TTCCEEECCSSCG
T ss_pred CCccEEECcCCcC
Confidence 7888888888876
No 130
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=2.5e-06 Score=65.14 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=43.8
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccc-cccceeecccccccC-CCCCccEEeeecCcCCccC--cccCCCCC
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQ-KMPKLHSVLIWNCSNVKDL--TWLVFAPN 153 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~-~~~~L~~L~I~~C~~L~~l--p~~~~l~~ 153 (214)
.++.|++++|. ++... ..+..+++|++|++.+ ..+..-......... ..++|+.|+|++|+++++- ..+..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46677777765 44322 3344555666666655 344322111000000 0135666666666666542 22344666
Q ss_pred ccEEeEecCccccc
Q 028049 154 LKCLRILDCDDMEE 167 (214)
Q Consensus 154 L~~L~i~~C~~l~~ 167 (214)
|++|++++|+++.+
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 66666666666543
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.90 E-value=7.7e-06 Score=75.41 Aligned_cols=107 Identities=15% Similarity=0.088 Sum_probs=60.0
Q ss_pred ccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCC
Q 028049 48 IHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK 127 (214)
Q Consensus 48 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~ 127 (214)
+..+.+|+.|+++......++.-. .-...|+.|+|+++ .+..++..+..+++|+.|+++++.+..++... ..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~---~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~ 291 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANI---FKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL----GS 291 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGG---GGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG----GG
T ss_pred hccCCCCcEEECCCCCCCCCChhh---cCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhh----cC
Confidence 344555666665433332222111 01245666777664 34455545666777777777776666554332 24
Q ss_pred CCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCc
Q 028049 128 MPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCD 163 (214)
Q Consensus 128 ~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~ 163 (214)
+++|+.|.++++ ++..+|. +..+++|+.|+++++.
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 677777777765 6666764 5667777777776654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.88 E-value=2.4e-05 Score=58.88 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=76.1
Q ss_pred CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049 2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ 81 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~ 81 (214)
+.+|.+ + .++|++|++.+++..+.+ ...+..+++|+.|+++......++.-. + .-.+.++
T Consensus 20 ~~~p~~-~--~~~l~~L~l~~n~l~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~-~-~~l~~L~ 79 (177)
T 2o6r_A 20 TSVPTG-I--PSSATRLELESNKLQSLP---------------HGVFDKLTQLTKLSLSQNQIQSLPDGV-F-DKLTKLT 79 (177)
T ss_dssp SSCCTT-C--CTTCSEEECCSSCCCCCC---------------TTTTTTCTTCSEEECCSSCCCCCCTTT-T-TTCTTCC
T ss_pred ccCCCC-C--CCCCcEEEeCCCcccEeC---------------HHHhcCcccccEEECCCCcceEeChhH-c-cCCCccC
Confidence 456754 2 378999999999873221 122456688888888755444333210 1 1235789
Q ss_pred EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCc
Q 028049 82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCS 140 (214)
Q Consensus 82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~ 140 (214)
.|+++++ .+..++ ..+..+++|++|++.++.+..++... ...+++|+.|++.+.+
T Consensus 80 ~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 80 ILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI---FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---TTTCTTCCEEECCSSC
T ss_pred EEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeCHHH---hcCCcccCEEEecCCC
Confidence 9999885 455554 34678899999999987777665322 1358899999998863
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.85 E-value=2.2e-05 Score=60.20 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhh-hccCCcchhcc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE-NFLKFPKLQTI 79 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~ 79 (214)
++.||.+ +.. +|++|++.+++..+.+ .. +.+..+++|+.|+++......+. .. +. -.+.
T Consensus 20 l~~ip~~-~~~--~l~~L~l~~n~i~~~~-----------~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~-~l~~ 79 (192)
T 1w8a_A 20 LKEIPRD-IPL--HTTELLLNDNELGRIS-----------SD---GLFGRLPHLVKLELKRNQLTGIEPNA--FE-GASH 79 (192)
T ss_dssp CSSCCSC-CCT--TCSEEECCSCCCCSBC-----------CS---CSGGGCTTCCEEECCSSCCCCBCTTT--TT-TCTT
T ss_pred cCcCccC-CCC--CCCEEECCCCcCCccC-----------Cc---cccccCCCCCEEECCCCCCCCcCHhH--cC-Cccc
Confidence 3567875 433 8999999999873321 00 11456678888888755544432 11 11 1357
Q ss_pred ccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049 80 TQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC 139 (214)
Q Consensus 80 l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C 139 (214)
++.|++++. .+..++ ..+..+++|++|+++++.+..+.... ...+++|+.|++.+.
T Consensus 80 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 80 IQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS---FEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTS---STTCTTCCEEECTTC
T ss_pred CCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH---hhcCCCCCEEEeCCC
Confidence 899999885 455554 44778899999999997777664322 235889999999874
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.82 E-value=7.7e-05 Score=56.35 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=56.7
Q ss_pred ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049 78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL 154 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L 154 (214)
..++.|++++. .+..++ ..+..+++|+.|+++++.+..++.... ..+++|+.|++++. +++.+|. +..+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF---DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHh---CCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence 57888888774 445553 456778888888888877776653221 24788888888874 7777764 5567888
Q ss_pred cEEeEecC
Q 028049 155 KCLRILDC 162 (214)
Q Consensus 155 ~~L~i~~C 162 (214)
++|++++.
T Consensus 108 ~~L~L~~N 115 (174)
T 2r9u_A 108 THIYLYNN 115 (174)
T ss_dssp SEEECCSS
T ss_pred CEEEeCCC
Confidence 88888774
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=2.5e-05 Score=59.57 Aligned_cols=64 Identities=13% Similarity=0.238 Sum_probs=34.7
Q ss_pred cccEEeecCCCCCCchh-hhcccc----cccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccC
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANM----EHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL 145 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l----~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l 145 (214)
.|+.|+|++|..+++-. ..+..+ ++|++|++++ +++..-.+... ..+++|++|+|++|++++..
T Consensus 86 ~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L---~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 86 YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL---HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG---GGCTTCCEEEEESCTTCCCH
T ss_pred CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH---hcCCCCCEEECCCCCCCCch
Confidence 45556666665554432 222222 2466666655 44443211111 24688888888888888763
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.77 E-value=0.0001 Score=55.36 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=57.2
Q ss_pred ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049 78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL 154 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L 154 (214)
..++.|++++. .+..+. ..+..+++|++|+++++.+..++...- ..+++|+.|++++. +++.++. +..+++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF---DKLTQLTQLSLNDN-QLKSIPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhc---cCCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence 57888888774 455553 456778888888888877776653221 35788888888875 7888764 5567888
Q ss_pred cEEeEecC
Q 028049 155 KCLRILDC 162 (214)
Q Consensus 155 ~~L~i~~C 162 (214)
++|++++-
T Consensus 105 ~~L~L~~N 112 (170)
T 3g39_A 105 THIWLLNN 112 (170)
T ss_dssp CEEECCSS
T ss_pred CEEEeCCC
Confidence 88888763
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.77 E-value=2.7e-06 Score=73.42 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=43.7
Q ss_pred cccEEeecCCCCCCc-----hhhhcccccccchhhccccccceeecccccc--cCCCCCccEEeeecCcCCc-----cCc
Q 028049 79 ITQALHIEDCNSLPL-----NLLHLANMEHLEKLFIEESNLEDWNVDCAGE--VQKMPKLHSVLIWNCSNVK-----DLT 146 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~--~~~~~~L~~L~I~~C~~L~-----~lp 146 (214)
.++.|++++|. +.. ++..+..+++|++|+++++.+.......... ....++|++|++++| ++. .++
T Consensus 314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHH
Confidence 56667776664 222 1123444566777777664443321110000 012567888888777 555 344
Q ss_pred c-cCCCCCccEEeEecC
Q 028049 147 W-LVFAPNLKCLRILDC 162 (214)
Q Consensus 147 ~-~~~l~~L~~L~i~~C 162 (214)
. +..+++|++|+++++
T Consensus 392 ~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHCCCCCEEECCSS
T ss_pred HHHHhCCCccEEECCCC
Confidence 2 445677888888776
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.61 E-value=9.7e-07 Score=68.07 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=85.6
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
+....+++.+++.++...+.. .. ... ....+..+++|+.|+++-.....++.+ .-.++++.|+++++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~----~~-l~~----l~~~~~~l~~L~~L~ls~n~l~~l~~~----~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMI----PP-IEK----MDATLSTLKACKHLALSTNNIEKISSL----SGMENLRILSLGRN 80 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCC----TT-CCC----CHHHHHHTTTCSEEECSEEEESCCCCH----HHHTTCCEEEEEEE
T ss_pred HHhcccccCcchheeEecccc----Cc-Hhh----hhHHHhcCCCCCEEECCCCCCcccccc----ccCCCCCEEECCCC
Confidence 345667777777777652210 00 000 011345567788887765544444322 12357899999886
Q ss_pred CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc---cCCCCCccEEeEecCc
Q 028049 89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW---LVFAPNLKCLRILDCD 163 (214)
Q Consensus 89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~---~~~l~~L~~L~i~~C~ 163 (214)
.+..++..+..+++|+.|+++++.+..++ .. ..+++|+.|+++++ ++..++. +..+++|++|++.+++
T Consensus 81 -~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~----~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 81 -LIKKIENLDAVADTLEELWISYNQIASLS-GI----EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -EECSCSSHHHHHHHCSEEEEEEEECCCHH-HH----HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -CcccccchhhcCCcCCEEECcCCcCCcCC-cc----ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 34455544556688999999986666553 12 24789999999886 6776643 6678999999998874
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.49 E-value=0.00021 Score=53.88 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=49.5
Q ss_pred ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCC
Q 028049 52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPK 130 (214)
Q Consensus 52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~ 130 (214)
++|+.|+++......+..- .+. -.+.|+.|++++. .+..++ ..+..+++|++|+++++.+..++... ...+++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~-~~~-~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~---~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPG-VFD-HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA---FDNLKS 106 (174)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTT-TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred CCCcEEEeCCCCccccCHH-Hhc-CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeCHHH---hccccC
Confidence 5677777665444333210 011 1246788888774 556655 33567788888888887777664321 134778
Q ss_pred ccEEeeecC
Q 028049 131 LHSVLIWNC 139 (214)
Q Consensus 131 L~~L~I~~C 139 (214)
|+.|++.+.
T Consensus 107 L~~L~L~~N 115 (174)
T 2r9u_A 107 LTHIYLYNN 115 (174)
T ss_dssp CSEEECCSS
T ss_pred CCEEEeCCC
Confidence 888888764
No 140
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.47 E-value=4.8e-05 Score=64.49 Aligned_cols=169 Identities=12% Similarity=0.154 Sum_probs=84.5
Q ss_pred hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049 9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c 88 (214)
+.++++|+.|.+.+.........|... ...-.-+..+++|+.|.+.......++. . . .++|+.|+|..|
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~------~~L~~ll~~~P~L~~L~L~g~~~l~l~~---~-~-~~~L~~L~L~~~ 203 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQ------VDLSPVLDAMPLLNNLKIKGTNNLSIGK---K-P-RPNLKSLEIISG 203 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBC------CBCHHHHHTCTTCCEEEEECCBTCBCCS---C-B-CTTCSEEEEECS
T ss_pred hhhcchhhheeecCcchhhcccccccc------cCHHHHHhcCCCCcEEEEeCCCCceecc---c-c-CCCCcEEEEecC
Confidence 557788888888654321000000000 0001113455778888776432112222 1 1 357888888765
Q ss_pred CCCCchh-hhc--ccccccchhhccc--cc------cceeecccccccCCCCCccEEeeecCcCCcc----CcccCCCCC
Q 028049 89 NSLPLNL-LHL--ANMEHLEKLFIEE--SN------LEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD----LTWLVFAPN 153 (214)
Q Consensus 89 ~~l~~l~-~~l--~~l~~L~~L~i~~--~~------l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~----lp~~~~l~~ 153 (214)
. +..-. ..+ ..+++|++|+++. +. ++.+..... ...||+|+.|.+.+|.--.. +.....+|+
T Consensus 204 ~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~--~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~ 280 (362)
T 2ra8_A 204 G-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280 (362)
T ss_dssp B-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC--TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG
T ss_pred C-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh--cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC
Confidence 3 32211 122 3567888887752 11 211110000 13588999999988743211 111124788
Q ss_pred ccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049 154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS 202 (214)
Q Consensus 154 L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp 202 (214)
|++|+++. +.+...-. . .+...+..+++|+.|++++|.
T Consensus 281 L~~LdLs~-n~L~d~G~----~------~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 281 LETMDISA-GVLTDEGA----R------LLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSEEECCS-SCCBHHHH----H------HHHTTHHHHTTCSEEECCSBB
T ss_pred CCEEECCC-CCCChHHH----H------HHHhhcccCCcceEEECCCCc
Confidence 99999854 34432210 0 111233467889999998774
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.45 E-value=0.00037 Score=57.82 Aligned_cols=81 Identities=22% Similarity=0.205 Sum_probs=59.9
Q ss_pred ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCcc
Q 028049 78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLK 155 (214)
Q Consensus 78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~ 155 (214)
..|+.|+|++.+.+..++ ..+..+++|+.|+++++.+..++...- ..+++|+.|++++ ++|..+|. .....+|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF---HFTPRLSRLNLSF-NALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG---GSCSCCCEEECCS-SCCSCCCSTTTCSCCCC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh---cCCcCCCEEeCCC-CccceeCHHHcccCCce
Confidence 468899998777777776 567888999999999888887753221 3588999999987 48888875 22233488
Q ss_pred EEeEecC
Q 028049 156 CLRILDC 162 (214)
Q Consensus 156 ~L~i~~C 162 (214)
.|++.+.
T Consensus 107 ~l~l~~N 113 (347)
T 2ifg_A 107 ELVLSGN 113 (347)
T ss_dssp EEECCSS
T ss_pred EEEeeCC
Confidence 8888763
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.38 E-value=0.00034 Score=52.41 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=52.2
Q ss_pred ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCC
Q 028049 52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPK 130 (214)
Q Consensus 52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~ 130 (214)
++|+.|+++-.....+..- .+. -.+.|+.|++++. .+..++ ..+..+++|++|+++++.+..++... ...+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~-~~~-~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPG-VFD-RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA---FDNLKS 103 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTT-TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred CCCcEEEcCCCcCCccChh-hhc-CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccCEeCHHH---hcCCCC
Confidence 5677777765544443210 011 1246888999875 556665 34577888999998887777665321 135788
Q ss_pred ccEEeeecC
Q 028049 131 LHSVLIWNC 139 (214)
Q Consensus 131 L~~L~I~~C 139 (214)
|+.|++++-
T Consensus 104 L~~L~L~~N 112 (170)
T 3g39_A 104 LTHIWLLNN 112 (170)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 899988763
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=0.00052 Score=56.72 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=34.2
Q ss_pred ccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc-EEeEecCcccccc
Q 028049 101 MEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK-CLRILDCDDMEEI 168 (214)
Q Consensus 101 l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~-~L~i~~C~~l~~i 168 (214)
+++|+.+++.+++++.++... -..+++|+.|.+.+ +++.++. ...+++|+ .+.+.+ +++.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~a---F~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFT---FAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTT---TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCCCcceecHhh---hhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEE
Confidence 456666666665566554221 12356677777765 4666653 34466676 666655 44433
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.0015 Score=53.99 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=21.3
Q ss_pred CCCccEEeeecCcCCccCcc--cCCCCCccEEeEec
Q 028049 128 MPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILD 161 (214)
Q Consensus 128 ~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~ 161 (214)
+++|+.+++.++ +++.++. ...+++|+++.+.+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc
Confidence 467777777654 4666654 44567788887743
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.11 E-value=0.001 Score=55.08 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=56.7
Q ss_pred ccCCccCceeeEEe-cccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeeccccccc
Q 028049 48 IHCLEQLNLITLSL-HGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEV 125 (214)
Q Consensus 48 L~~L~~L~~L~i~~-~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~ 125 (214)
+..+.+|+.|+++. .....++.- .+.. ..+|+.|+|++. .+..++ ..+..+++|+.|+++++.+..++....
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~-~~~~-l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--- 100 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR-DLRG-LGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--- 100 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG-GSCS-CCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT---
T ss_pred CCCCCCeeEEEccCCCCCCCcChh-Hhcc-ccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc---
Confidence 67778899988873 554444321 0111 357899999885 566665 467888999999999988877653321
Q ss_pred CCCCCccEEeeecC
Q 028049 126 QKMPKLHSVLIWNC 139 (214)
Q Consensus 126 ~~~~~L~~L~I~~C 139 (214)
..++ |+.|.+.+.
T Consensus 101 ~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 101 QGLS-LQELVLSGN 113 (347)
T ss_dssp CSCC-CCEEECCSS
T ss_pred ccCC-ceEEEeeCC
Confidence 1233 899998763
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.00 E-value=6.5e-05 Score=63.78 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=68.6
Q ss_pred CcccceEEccccCcccccccccccccchhhHhhhhhccCC-ccCceeeEEecccch--hhhccCCcchhccccEEeecCC
Q 028049 12 FSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCL-EQLNLITLSLHGSRG--VENFLKFPKLQTITQALHIEDC 88 (214)
Q Consensus 12 L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L-~~L~~L~i~~~~~~~--l~~l~~~~~l~~~l~~L~l~~c 88 (214)
+++|++|++.+|.... ........-+..- .+|+.|+++-..... +..+. ....+++.|++++|
T Consensus 71 ~~~L~~L~Ls~n~l~~-----------~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~---~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTP-----------VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL---PVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTTSCCCH-----------HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH---HHHHTEEEEECCSS
T ss_pred HhhCCEEEecCCCCCH-----------HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH---HHHHhccHhhcCCC
Confidence 4578888888887621 1111111222222 577777765443321 22221 12246778888776
Q ss_pred CCCCchh-----hhc-ccccccchhhccccccceeecccc-cccCCCCCccEEeeecCcCCccC-----c-ccCCCCCcc
Q 028049 89 NSLPLNL-----LHL-ANMEHLEKLFIEESNLEDWNVDCA-GEVQKMPKLHSVLIWNCSNVKDL-----T-WLVFAPNLK 155 (214)
Q Consensus 89 ~~l~~l~-----~~l-~~l~~L~~L~i~~~~l~~l~~~~~-~~~~~~~~L~~L~I~~C~~L~~l-----p-~~~~l~~L~ 155 (214)
.+.... ..+ ...++|++|+++++.+........ ......++|++|++++| ++... . .+...++|+
T Consensus 137 -~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 137 -SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp -CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCC
T ss_pred -CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcC
Confidence 333322 112 234567888877755543211000 00124667888888776 35432 1 133456788
Q ss_pred EEeEecC
Q 028049 156 CLRILDC 162 (214)
Q Consensus 156 ~L~i~~C 162 (214)
+|++++|
T Consensus 215 ~L~Ls~N 221 (372)
T 3un9_A 215 ELNVAYN 221 (372)
T ss_dssp EEECCSS
T ss_pred eEECCCC
Confidence 8888776
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.27 E-value=0.00028 Score=59.81 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=78.0
Q ss_pred CcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCCc-chhccccEEeecCC
Q 028049 12 FSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKFP-KLQTITQALHIEDC 88 (214)
Q Consensus 12 L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~~-~l~~~l~~L~l~~c 88 (214)
.++|++|++++|.... ........ .+++|+.|+++...... ...+...- .-...++.|++++|
T Consensus 100 ~~~L~~L~Ls~n~l~~-----------~~~~~l~~---~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n 165 (372)
T 3un9_A 100 RHALDEVNLASCQLDP-----------AGLRTLLP---VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165 (372)
T ss_dssp SSCEEEEECTTCCCCH-----------HHHHHTHH---HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred CCCceEEEecCCCCCH-----------HHHHHHHH---HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence 3799999999998721 11111112 23567777776544422 12221100 01246899999998
Q ss_pred CCCCc-----hhhhcccccccchhhccccccceeeccc-ccccCCCCCccEEeeecCcCCccCc-----c-cCCCCCccE
Q 028049 89 NSLPL-----NLLHLANMEHLEKLFIEESNLEDWNVDC-AGEVQKMPKLHSVLIWNCSNVKDLT-----W-LVFAPNLKC 156 (214)
Q Consensus 89 ~~l~~-----l~~~l~~l~~L~~L~i~~~~l~~l~~~~-~~~~~~~~~L~~L~I~~C~~L~~lp-----~-~~~l~~L~~ 156 (214)
. +.. +...+...++|++|+++++.+....... .......++|+.|++++| ++.... . +...++|++
T Consensus 166 ~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~ 243 (372)
T 3un9_A 166 P-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLEL 243 (372)
T ss_dssp C-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCE
T ss_pred C-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCE
Confidence 4 433 2233466778999999886555321100 000123568999999987 555321 1 224688999
Q ss_pred EeEecCc
Q 028049 157 LRILDCD 163 (214)
Q Consensus 157 L~i~~C~ 163 (214)
|+++++.
T Consensus 244 L~Ls~N~ 250 (372)
T 3un9_A 244 LHLYFNE 250 (372)
T ss_dssp EECTTSS
T ss_pred EeccCCC
Confidence 9998874
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.10 E-value=0.055 Score=46.09 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=19.0
Q ss_pred CCCCChhhhccCcccceEEccccCc
Q 028049 1 MSEIPQQLISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 1 ~~~iP~~~i~~L~~Lq~L~l~~~~~ 25 (214)
++.|+.+++.++++|+.+++.+++.
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~l 192 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTKI 192 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSCC
T ss_pred ccEehHHHhhCcccCCeeecCCCcc
Confidence 3567777788888999998887654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.09 E-value=0.004 Score=52.61 Aligned_cols=135 Identities=15% Similarity=0.067 Sum_probs=75.3
Q ss_pred hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccc--hhhhccCCcchhccccEEee
Q 028049 8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSR--GVENFLKFPKLQTITQALHI 85 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~l~~L~l 85 (214)
++..+++|+.|+++++....+ ..+ .+++|+.|.+.....+ .+..+.. ...++|+.|.|
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l-----------------~~~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L 226 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI-----------------GKK-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVL 226 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC-----------------CSC-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEE
T ss_pred HHhcCCCCcEEEEeCCCCcee-----------------ccc-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEE
Confidence 567889999999998742111 112 2578888887644432 1222221 01246788887
Q ss_pred cCC-------CCCCchhhhc--ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCcc-----Ccc-cCC
Q 028049 86 EDC-------NSLPLNLLHL--ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD-----LTW-LVF 150 (214)
Q Consensus 86 ~~c-------~~l~~l~~~l--~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~-----lp~-~~~ 150 (214)
+.+ .++..+...+ ..+++|++|.+.++.+..-..........+++|++|+++. +.+.. ++. +..
T Consensus 227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDK 305 (362)
T ss_dssp ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHH
T ss_pred eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhccc
Confidence 532 1122222112 3468899998876332210000000013588999999965 46665 222 245
Q ss_pred CCCccEEeEecCc
Q 028049 151 APNLKCLRILDCD 163 (214)
Q Consensus 151 l~~L~~L~i~~C~ 163 (214)
+++|+.|++++|.
T Consensus 306 l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 306 IKHLKFINMKYNY 318 (362)
T ss_dssp HTTCSEEECCSBB
T ss_pred CCcceEEECCCCc
Confidence 7899999998873
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.69 E-value=0.073 Score=45.30 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=33.7
Q ss_pred cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049 79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK 155 (214)
Q Consensus 79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~ 155 (214)
.++.+.+.. +++.+. ..+..+++|+.+.+.+ +++.+....- .-.+|+.+.+.+ +++.++. ...+++|+
T Consensus 204 ~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF----~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~ 274 (401)
T 4fdw_A 204 GIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAF----RESGITTVKLPN--GVTNIASRAFYYCPELA 274 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTTTCTTCCCEECCT-TCCEECTTTT----TTCCCSEEEEET--TCCEECTTTTTTCTTCC
T ss_pred ccCEEEeCC--chheehhhHhhCCCCCCEEecCC-CccCcccccc----ccCCccEEEeCC--CccEEChhHhhCCCCCC
Confidence 445555532 233333 3445556666666543 2333321110 114566666643 4555542 33455666
Q ss_pred EEeEe
Q 028049 156 CLRIL 160 (214)
Q Consensus 156 ~L~i~ 160 (214)
.+.+.
T Consensus 275 ~l~l~ 279 (401)
T 4fdw_A 275 EVTTY 279 (401)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 66553
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.52 E-value=0.003 Score=47.94 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=12.0
Q ss_pred hhccCcccceEEcccc-Cc
Q 028049 8 LISSFSKLQVLRMLHC-GY 25 (214)
Q Consensus 8 ~i~~L~~Lq~L~l~~~-~~ 25 (214)
++...++|++|++++| ..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i 49 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNI 49 (185)
T ss_dssp HHTTCTTCCEEECTTCTTC
T ss_pred HHhcCCCCCEEEecCCCCC
Confidence 3456677777777777 54
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.99 E-value=0.039 Score=44.55 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=7.4
Q ss_pred cCcccceEEccccCc
Q 028049 11 SFSKLQVLRMLHCGY 25 (214)
Q Consensus 11 ~L~~Lq~L~l~~~~~ 25 (214)
++++|++|++++++.
T Consensus 168 ~l~~L~~L~Ls~N~l 182 (267)
T 3rw6_A 168 NIPELLSLNLSNNRL 182 (267)
T ss_dssp HCTTCCEEECTTSCC
T ss_pred hCCCCCEEECCCCCC
Confidence 344555555555544
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.24 E-value=0.041 Score=44.45 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=38.6
Q ss_pred cccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCC--CccEEeEecCc
Q 028049 100 NMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAP--NLKCLRILDCD 163 (214)
Q Consensus 100 ~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~--~L~~L~i~~C~ 163 (214)
++++|+.|+++++.+..+.. .......+++|+.|++++ ++++.+..+..+. +|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCc
Confidence 46788888888866655421 011112588888888876 4666654333333 78888887765
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.87 E-value=0.23 Score=37.25 Aligned_cols=17 Identities=0% Similarity=0.073 Sum_probs=12.5
Q ss_pred hccCcccceEEccccCc
Q 028049 9 ISSFSKLQVLRMLHCGY 25 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~~~ 25 (214)
+...++|++|++.+|..
T Consensus 61 L~~~~~L~~L~Ls~n~i 77 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRS 77 (185)
T ss_dssp HTTCCSCCEEECTTSCC
T ss_pred HHhCCCcCEEECcCCCC
Confidence 45567788888888876
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=72.49 E-value=2.3 Score=29.90 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=25.3
Q ss_pred CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEe
Q 028049 3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSL 61 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~ 61 (214)
.||.+ + -++|++|+|.+++....+ .. .+..+++|+.+++.-
T Consensus 24 ~vP~~-l--p~~l~~L~Ls~N~l~~l~------------~~---~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 24 SLPTA-F--PVDTTELVLTGNNLTALP------------PG---LLDALPALRTAHLGA 64 (130)
T ss_dssp TSCSC-C--CTTCSEEECTTSCCSSCC------------TT---TGGGCTTCCEEECCS
T ss_pred cCCCC-C--CcCCCEEECCCCcCCccC------------hh---hhhhccccCEEEecC
Confidence 56654 2 136899999999985442 11 234456677777664
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=67.06 E-value=29 Score=28.53 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=15.0
Q ss_pred CCChhhhccCcccceEEcccc
Q 028049 3 EIPQQLISSFSKLQVLRMLHC 23 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~~~ 23 (214)
.|..+++.+.++|+.+.+.+.
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~ 172 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDS 172 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT
T ss_pred ccchhhhcccCCCcEEecCCc
Confidence 455566778888888887654
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=62.37 E-value=4.5 Score=28.32 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=17.4
Q ss_pred ccchhhccccccceeecccccccCCCCCccEEeeec
Q 028049 103 HLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWN 138 (214)
Q Consensus 103 ~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~ 138 (214)
+|++|+++++.+..++.+. ...+++|+.|.+.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~---f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGL---LDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTSCCSSCCTTT---GGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccChhh---hhhccccCEEEecC
Confidence 4666666665555554221 12355666666653
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=60.80 E-value=45 Score=27.37 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=5.3
Q ss_pred cCcccccccc
Q 028049 198 LGNASNLKAY 207 (214)
Q Consensus 198 l~~cp~L~~i 207 (214)
..+|++|+.+
T Consensus 384 F~~c~~L~~I 393 (394)
T 4fs7_A 384 FEDTTKFKWI 393 (394)
T ss_dssp BCTTCEEEEE
T ss_pred ecCCCCCcEE
Confidence 4456665543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=51.48 E-value=42 Score=27.23 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=10.6
Q ss_pred CCChhhhccCcccceEEcc
Q 028049 3 EIPQQLISSFSKLQVLRML 21 (214)
Q Consensus 3 ~iP~~~i~~L~~Lq~L~l~ 21 (214)
+|++++..+.++|+.+.+.
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVA 77 (379)
T ss_dssp EECTTTTTTCTTCCEEEEC
T ss_pred ChHHHHhhCCCCCCEEEeC
Confidence 4555555556666666554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=37.81 E-value=96 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=10.1
Q ss_pred CCCChhhhccCcccceEEc
Q 028049 2 SEIPQQLISSFSKLQVLRM 20 (214)
Q Consensus 2 ~~iP~~~i~~L~~Lq~L~l 20 (214)
++|.++++.+.++|+.+.+
T Consensus 76 t~Ig~~AF~~C~~L~~i~~ 94 (394)
T 4gt6_A 76 TEIGSNAFYNCTSLKRVTI 94 (394)
T ss_dssp CEECTTTTTTCTTCCEEEE
T ss_pred eEEhHHHhhCCccCceEee
Confidence 3444444555566665554
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=30.79 E-value=1.1e+02 Score=24.89 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=14.9
Q ss_pred CCCccEEeeecCcCCccCcc--cCCCCCccEEeE
Q 028049 128 MPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRI 159 (214)
Q Consensus 128 ~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i 159 (214)
..+|+.+.|.+ +++.+.. ...+.+|+.+.+
T Consensus 310 c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 310 CISLKSIDIPE--GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred CCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence 34566666643 3444432 223455555555
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=25.62 E-value=40 Score=25.45 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=50.8
Q ss_pred hccCcccceEEcccc-CcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCCcchhccccEEee
Q 028049 9 ISSFSKLQVLRMLHC-GYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKFPKLQTITQALHI 85 (214)
Q Consensus 9 i~~L~~Lq~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~~~l~~~l~~L~l 85 (214)
+.+=+.|++|++.++ ... ..+.....+.|+.=.+|+.|++....+.. .+.+-..-+-.+.|++|+|
T Consensus 37 l~~n~~L~~L~L~~nn~ig-----------d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVS-----------KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp HTTCSSCCEEECTTCCSSC-----------HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred HhcCCCccEEECCCCCCCC-----------HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 455678999999886 541 11223345556666788888876444321 1122111111246889999
Q ss_pred cCCCCCCc-----hhhhcccccccchhhccc
Q 028049 86 EDCNSLPL-----NLLHLANMEHLEKLFIEE 111 (214)
Q Consensus 86 ~~c~~l~~-----l~~~l~~l~~L~~L~i~~ 111 (214)
++. .+.. +...+..-+.|++|++++
T Consensus 106 ~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 106 ESN-FLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSS-BCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCC-cCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 764 3322 213344445788888875
Done!