BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028050
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 49/179 (27%)
Query: 12 NYGDALYWNARY--VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNAHLQ----- 64
Y + YW+ RY + +DW+ +S+ R + + R+L++GCGN+ L
Sbjct: 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFL 62
Query: 65 ---------------------------------MDVRDMSFFEDESFDAVIDKGTLDSLM 91
MDVR + F SFD V++KGTLD+L+
Sbjct: 63 GGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDF-PSASFDVVLEKGTLDALL 121
Query: 92 CGTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 142
G P + S Q+L EVSR+L PGG ++ +T P R H Y W +
Sbjct: 122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLR 180
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 42/128 (32%)
Query: 28 GSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNAHLQMDVRDMSF--------------- 72
S ++ R L P + KY +VL + CG + D F
Sbjct: 17 NSQEYRSRIETLEPLLXKYXKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKA 76
Query: 73 ----------------------FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 110
FED++FD VI +DS++ P+ +Q+ EV R+
Sbjct: 77 REYAKSRESNVEFIVGDARKLSFEDKTFDYVI---FIDSIVHF--EPLELNQVFKEVRRV 131
Query: 111 LKPGGIYM 118
LKP G ++
Sbjct: 132 LKPSGKFI 139
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 43/127 (33%)
Query: 37 SALRPFVRKYIPTSSRVLMVGCGNAH------------LQMDVR--------------DM 70
S + PF +Y+ + VL VGCG+ + + +D+ D+
Sbjct: 41 STIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKERGEGPDL 100
Query: 71 SF---------FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121
SF FE+E F+A+ +L+ T P+ A L E+ R+LK G Y I
Sbjct: 101 SFIKGDLSSLPFENEQFEAIXAINSLE----WTEEPLRA---LNEIKRVLKSDG-YACIA 152
Query: 122 YGDPKAR 128
P A+
Sbjct: 153 ILGPTAK 159
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 37 SALRPFVRKYIPTSSRVLMVGCGNAHLQMDVRDMSFFED------ESFDAVIDKGTLDSL 90
S L P + +P+ VL+VGCG A L + + ++ F D E + ++ G D +
Sbjct: 19 SPLAPAHTEAVPSQVDVLIVGCGPAGLTLAAQ-LAAFPDIRTCIVEQKEGPMELGQADGI 77
Query: 91 MCGT 94
C T
Sbjct: 78 ACRT 81
>pdb|3PS9|A Chain A, Crystal Structure Of Mnmc From E. Coli
Length = 676
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNAHLQM---DVRDMSFFEDESFDAVIDKGTLD 88
W ++ A P +P R+L+ G L + D+ +++ D+S + +D LD
Sbjct: 131 WAEQLQAQWPMP---LPGCHRLLL-DAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLD 186
Query: 89 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121
N + + ++RL +PGG T
Sbjct: 187 GFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 219
>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Anamorsin
Length = 176
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 71 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119
S ++ SFD + L L+ G+ + ++++L E++R+L+PGG L
Sbjct: 57 SAHKESSFDII-----LSGLVPGSTT-LHSAEILAEIARILRPGGCLFL 99
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 70 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119
S ++ SFD + L L+ G+ + ++++L E++R+L+PGG L
Sbjct: 59 QSAHKESSFDII-----LSGLVPGSTT-LHSAEILAEIARILRPGGCLFL 102
>pdb|3AWI|A Chain A, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|B Chain B, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|C Chain C, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|D Chain D, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|E Chain E, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|F Chain F, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
Length = 688
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 66 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121
D+ +++ D+S + +D LD N + + ++RL +PGG T
Sbjct: 176 DINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 231
>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
Length = 215
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 48 PTSSRVLMVGCGNAHLQMDVRD-MSFFEDESFDAVI-----------DKGTLDSLMCGTN 95
P S V GCG+ L +R+ + F+ S D + D+ ++ C +
Sbjct: 66 PASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSL 125
Query: 96 APISASQMLGEVSRLLKPGGI 116
+ L E +R+LKPGG+
Sbjct: 126 MGTNIRDFLEEANRVLKPGGL 146
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 142 ELYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDE 201
+++ I P K G S++ + + +DD + +LEDP S + + M D DE
Sbjct: 182 DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDE 241
Query: 202 NHIPSYTLK 210
+ Y ++
Sbjct: 242 PALIRYDVE 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,323,983
Number of Sequences: 62578
Number of extensions: 315974
Number of successful extensions: 652
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 12
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)