Query 028050
Match_columns 214
No_of_seqs 213 out of 2512
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2227 UbiG 2-polyprenyl-3-me 99.7 8.7E-18 1.9E-22 134.9 4.9 168 10-196 14-242 (243)
2 PLN02396 hexaprenyldihydroxybe 99.6 3.2E-16 6.9E-21 133.4 4.4 132 49-199 131-319 (322)
3 KOG1271 Methyltransferases [Ge 99.6 8.6E-15 1.9E-19 112.7 8.7 146 7-156 9-214 (227)
4 COG2226 UbiE Methylase involve 99.5 8.4E-15 1.8E-19 119.1 6.8 71 48-126 50-161 (238)
5 PF01209 Ubie_methyltran: ubiE 99.5 4.8E-14 1E-18 115.1 5.5 72 47-126 45-158 (233)
6 KOG2352 Predicted spermine/spe 99.4 5.1E-13 1.1E-17 116.8 10.3 117 6-123 3-163 (482)
7 PF08241 Methyltransf_11: Meth 99.4 2.3E-13 4.9E-18 94.6 5.4 49 63-119 47-95 (95)
8 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.8E-12 3.8E-17 104.6 9.9 102 17-123 1-154 (213)
9 PRK13255 thiopurine S-methyltr 99.4 5.7E-12 1.2E-16 102.0 10.4 103 15-122 2-156 (218)
10 PLN02233 ubiquinone biosynthes 99.4 2E-12 4.3E-17 107.4 7.8 71 47-125 71-186 (261)
11 PLN02244 tocopherol O-methyltr 99.3 5.8E-12 1.3E-16 108.4 9.7 68 48-123 117-225 (340)
12 KOG1270 Methyltransferases [Co 99.3 7.6E-14 1.6E-18 113.2 -2.0 110 76-197 157-277 (282)
13 KOG4300 Predicted methyltransf 99.3 2.6E-12 5.7E-17 100.9 6.1 57 63-126 131-187 (252)
14 PF13489 Methyltransf_23: Meth 99.3 5.2E-12 1.1E-16 96.3 6.3 70 47-124 20-118 (161)
15 PTZ00098 phosphoethanolamine N 99.3 2.5E-11 5.5E-16 100.9 9.9 79 39-123 41-158 (263)
16 KOG1540 Ubiquinone biosynthesi 99.2 2.3E-11 5.1E-16 98.4 7.2 56 63-126 164-219 (296)
17 PRK11036 putative S-adenosyl-L 99.2 1.4E-11 3E-16 101.9 6.1 79 39-124 34-152 (255)
18 PRK13256 thiopurine S-methyltr 99.2 7.7E-11 1.7E-15 95.5 10.2 106 13-123 6-165 (226)
19 PF05724 TPMT: Thiopurine S-me 99.2 2E-11 4.3E-16 98.7 6.5 103 15-122 2-156 (218)
20 PRK10258 biotin biosynthesis p 99.2 4.6E-11 9.9E-16 98.4 8.6 68 49-124 42-143 (251)
21 PRK11207 tellurite resistance 99.2 5.7E-11 1.2E-15 94.7 8.6 92 14-121 4-134 (197)
22 KOG2361 Predicted methyltransf 99.2 5.4E-11 1.2E-15 95.6 8.2 112 14-132 34-194 (264)
23 TIGR03587 Pse_Me-ase pseudamin 99.2 8E-11 1.7E-15 94.4 8.5 69 46-123 40-144 (204)
24 PRK05785 hypothetical protein; 99.2 6.6E-11 1.4E-15 96.3 8.0 73 42-124 44-148 (226)
25 TIGR02752 MenG_heptapren 2-hep 99.2 8.4E-11 1.8E-15 95.6 8.5 71 47-125 43-155 (231)
26 PRK14103 trans-aconitate 2-met 99.2 7.5E-11 1.6E-15 97.5 7.8 74 40-122 19-127 (255)
27 PRK15068 tRNA mo(5)U34 methylt 99.2 6.4E-11 1.4E-15 101.2 7.2 65 49-122 122-227 (322)
28 PF07021 MetW: Methionine bios 99.2 5.1E-11 1.1E-15 93.3 5.8 82 41-132 5-122 (193)
29 COG2230 Cfa Cyclopropane fatty 99.1 5.5E-11 1.2E-15 98.7 5.8 75 46-126 69-181 (283)
30 PLN02336 phosphoethanolamine N 99.1 1.6E-10 3.5E-15 103.6 9.2 69 47-123 264-371 (475)
31 TIGR00452 methyltransferase, p 99.1 6.5E-11 1.4E-15 100.6 6.2 41 75-122 186-226 (314)
32 TIGR00477 tehB tellurite resis 99.1 2.6E-10 5.7E-15 90.7 9.0 92 15-122 5-134 (195)
33 PF02353 CMAS: Mycolic acid cy 99.1 1.3E-10 2.8E-15 97.0 7.1 69 46-123 59-168 (273)
34 PF12847 Methyltransf_18: Meth 99.1 1.8E-10 3.8E-15 82.9 6.8 67 49-121 1-111 (112)
35 TIGR02072 BioC biotin biosynth 99.1 2.4E-10 5.2E-15 92.7 8.0 68 49-124 34-138 (240)
36 PF03848 TehB: Tellurite resis 99.1 5.7E-10 1.2E-14 88.2 9.1 92 15-122 5-134 (192)
37 PRK11873 arsM arsenite S-adeno 99.1 2.2E-10 4.7E-15 95.5 7.2 70 46-123 74-185 (272)
38 PRK15451 tRNA cmo(5)U34 methyl 99.1 3.1E-10 6.7E-15 93.5 8.0 73 42-122 49-165 (247)
39 PLN02490 MPBQ/MSBQ methyltrans 99.1 1.7E-10 3.7E-15 98.8 6.1 68 48-123 112-217 (340)
40 PF13847 Methyltransf_31: Meth 99.1 3.1E-10 6.6E-15 86.5 6.9 68 48-123 2-112 (152)
41 PF08003 Methyltransf_9: Prote 99.1 2.9E-10 6.3E-15 94.8 6.7 71 43-122 107-220 (315)
42 PF08242 Methyltransf_12: Meth 99.0 2.1E-10 4.5E-15 81.0 4.5 35 76-117 65-99 (99)
43 PRK12335 tellurite resistance 99.0 1.1E-09 2.4E-14 92.2 9.1 42 75-121 182-223 (287)
44 PRK01683 trans-aconitate 2-met 99.0 4.7E-10 1E-14 92.7 6.8 66 47-121 29-130 (258)
45 TIGR00740 methyltransferase, p 99.0 1.7E-09 3.6E-14 88.6 8.3 69 46-122 50-162 (239)
46 PRK08317 hypothetical protein; 99.0 1.6E-09 3.4E-14 87.7 7.3 69 46-122 16-125 (241)
47 PRK00107 gidB 16S rRNA methylt 99.0 9.4E-09 2E-13 81.3 11.4 67 45-124 41-148 (187)
48 PF13649 Methyltransf_25: Meth 99.0 4.4E-10 9.6E-15 79.8 3.2 47 63-115 54-101 (101)
49 PRK06922 hypothetical protein; 99.0 2.1E-09 4.6E-14 98.1 8.2 74 49-122 418-538 (677)
50 PF05401 NodS: Nodulation prot 98.9 3.6E-09 7.8E-14 83.2 8.2 103 14-123 4-148 (201)
51 smart00138 MeTrc Methyltransfe 98.9 5.3E-09 1.2E-13 87.0 9.5 50 66-121 193-242 (264)
52 smart00828 PKS_MT Methyltransf 98.9 2.2E-09 4.8E-14 86.8 6.0 41 75-122 65-105 (224)
53 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 4.8E-09 1E-13 84.3 7.8 69 48-124 38-146 (223)
54 PRK11088 rrmA 23S rRNA methylt 98.9 3E-09 6.5E-14 88.8 6.5 68 42-124 77-184 (272)
55 PF06080 DUF938: Protein of un 98.9 7.6E-09 1.6E-13 82.1 8.1 78 38-120 13-140 (204)
56 TIGR00138 gidB 16S rRNA methyl 98.9 9.7E-09 2.1E-13 80.8 8.1 60 50-122 43-143 (181)
57 PRK00216 ubiE ubiquinone/menaq 98.9 9.3E-09 2E-13 83.4 8.1 45 73-124 117-161 (239)
58 PF05148 Methyltransf_8: Hypot 98.9 2.1E-08 4.6E-13 79.6 9.7 68 47-123 70-160 (219)
59 PRK11705 cyclopropane fatty ac 98.8 9.7E-09 2.1E-13 89.8 8.2 71 47-123 165-269 (383)
60 PLN02336 phosphoethanolamine N 98.8 1.1E-08 2.4E-13 91.8 7.7 68 49-122 37-143 (475)
61 PRK05134 bifunctional 3-demeth 98.8 1E-08 2.2E-13 83.5 6.3 43 74-123 111-153 (233)
62 KOG3045 Predicted RNA methylas 98.8 1.7E-08 3.7E-13 82.2 7.2 68 47-123 178-266 (325)
63 PRK08287 cobalt-precorrin-6Y C 98.8 5.2E-08 1.1E-12 76.8 9.8 37 75-121 95-131 (187)
64 PRK11188 rrmJ 23S rRNA methylt 98.8 2.1E-08 4.6E-13 80.6 6.8 75 47-124 49-168 (209)
65 TIGR02716 C20_methyl_CrtF C-20 98.7 2.9E-08 6.3E-13 84.2 7.5 68 47-122 147-255 (306)
66 TIGR02081 metW methionine bios 98.7 2.7E-08 5.8E-13 78.9 6.5 64 43-113 7-104 (194)
67 TIGR02469 CbiT precorrin-6Y C5 98.7 6E-08 1.3E-12 70.6 7.4 38 75-122 86-123 (124)
68 PRK06202 hypothetical protein; 98.7 5E-08 1.1E-12 79.5 7.6 52 66-125 119-170 (232)
69 TIGR03534 RF_mod_PrmC protein- 98.7 5.9E-08 1.3E-12 79.5 7.1 49 73-121 150-217 (251)
70 COG2242 CobL Precorrin-6B meth 98.7 1.6E-07 3.4E-12 73.4 9.0 46 77-133 102-149 (187)
71 PRK00377 cbiT cobalt-precorrin 98.6 1.8E-07 3.9E-12 74.5 9.1 36 76-121 110-145 (198)
72 TIGR00406 prmA ribosomal prote 98.6 1.3E-07 2.8E-12 79.7 8.7 72 42-123 152-261 (288)
73 PF05175 MTS: Methyltransferas 98.6 9.2E-08 2E-12 74.4 7.2 49 73-123 94-142 (170)
74 PRK13944 protein-L-isoaspartat 98.6 9.2E-08 2E-12 76.6 7.3 61 47-121 70-173 (205)
75 PLN02232 ubiquinone biosynthes 98.6 7.8E-08 1.7E-12 74.1 6.0 56 63-126 31-86 (160)
76 PLN03075 nicotianamine synthas 98.6 7.1E-08 1.5E-12 81.0 6.2 41 75-121 193-233 (296)
77 PRK14966 unknown domain/N5-glu 98.6 1.9E-07 4.1E-12 81.8 8.8 118 14-132 216-393 (423)
78 KOG1541 Predicted protein carb 98.6 3.3E-07 7.1E-12 73.2 8.9 107 16-124 16-163 (270)
79 KOG1331 Predicted methyltransf 98.6 9E-08 2E-12 79.0 5.9 81 37-123 34-145 (293)
80 COG4106 Tam Trans-aconitate me 98.6 6.5E-08 1.4E-12 76.9 4.8 73 39-121 19-129 (257)
81 TIGR00537 hemK_rel_arch HemK-r 98.6 3E-07 6.5E-12 72.0 8.6 60 75-134 80-155 (179)
82 TIGR01983 UbiG ubiquinone bios 98.6 1.1E-07 2.3E-12 76.8 6.1 41 76-123 111-151 (224)
83 PRK09328 N5-glutamine S-adenos 98.6 1.7E-07 3.8E-12 78.0 7.3 47 75-121 173-238 (275)
84 PF03291 Pox_MCEL: mRNA cappin 98.6 1.3E-07 2.8E-12 81.0 6.3 46 76-124 144-189 (331)
85 PRK00517 prmA ribosomal protei 98.5 2.3E-07 4.9E-12 76.6 7.1 71 42-123 112-215 (250)
86 PRK00121 trmB tRNA (guanine-N( 98.5 1.2E-07 2.5E-12 75.9 5.2 75 49-123 40-158 (202)
87 PRK09489 rsmC 16S ribosomal RN 98.5 4.4E-07 9.5E-12 78.2 8.3 47 75-123 259-305 (342)
88 TIGR00438 rrmJ cell division p 98.5 5E-07 1.1E-11 71.3 7.8 74 46-123 29-148 (188)
89 PF06325 PrmA: Ribosomal prote 98.5 2.8E-07 6.2E-12 77.6 6.7 74 40-123 152-261 (295)
90 TIGR02021 BchM-ChlM magnesium 98.5 3.8E-07 8.3E-12 73.6 7.3 40 76-120 118-157 (219)
91 PRK15001 SAM-dependent 23S rib 98.5 4.4E-07 9.6E-12 79.0 7.9 46 74-121 295-340 (378)
92 PRK00312 pcm protein-L-isoaspa 98.5 8.1E-07 1.8E-11 71.4 8.5 35 75-122 142-176 (212)
93 PRK13942 protein-L-isoaspartat 98.5 3.7E-07 8E-12 73.5 6.4 62 46-121 73-176 (212)
94 COG2264 PrmA Ribosomal protein 98.5 4E-07 8.8E-12 76.4 6.8 74 40-123 153-265 (300)
95 TIGR00536 hemK_fam HemK family 98.5 1.1E-06 2.3E-11 74.0 9.2 48 74-121 179-244 (284)
96 PRK07580 Mg-protoporphyrin IX 98.5 5.8E-07 1.3E-11 72.7 7.3 39 74-117 124-162 (230)
97 TIGR03533 L3_gln_methyl protei 98.4 1E-06 2.2E-11 74.2 8.5 49 73-121 185-251 (284)
98 KOG3010 Methyltransferase [Gen 98.4 6.8E-07 1.5E-11 72.2 7.0 42 74-123 97-139 (261)
99 TIGR00091 tRNA (guanine-N(7)-) 98.4 2.5E-07 5.4E-12 73.5 4.5 73 49-123 16-134 (194)
100 TIGR03438 probable methyltrans 98.4 8.2E-07 1.8E-11 75.3 7.7 73 44-121 58-177 (301)
101 COG4976 Predicted methyltransf 98.4 1.9E-07 4.2E-12 74.9 3.5 79 37-122 112-226 (287)
102 PF13659 Methyltransf_26: Meth 98.4 2.7E-07 5.9E-12 66.7 3.9 59 63-121 55-115 (117)
103 TIGR00080 pimt protein-L-isoas 98.4 8.3E-07 1.8E-11 71.5 6.9 61 47-121 75-177 (215)
104 cd02440 AdoMet_MTases S-adenos 98.4 8.9E-07 1.9E-11 61.0 6.1 40 74-120 63-103 (107)
105 PF05219 DREV: DREV methyltran 98.4 7.4E-07 1.6E-11 73.0 6.2 64 50-121 95-188 (265)
106 PRK01544 bifunctional N5-gluta 98.4 1.4E-06 3E-11 78.9 8.2 47 74-120 203-268 (506)
107 PRK14967 putative methyltransf 98.3 2E-06 4.4E-11 69.7 8.1 75 47-123 34-161 (223)
108 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 5.4E-07 1.2E-11 74.3 4.6 58 63-123 139-201 (256)
109 PRK11805 N5-glutamine S-adenos 98.3 2E-06 4.3E-11 73.1 7.9 48 74-121 198-263 (307)
110 TIGR01177 conserved hypothetic 98.3 2E-06 4.3E-11 73.8 7.8 77 46-123 179-296 (329)
111 TIGR03704 PrmC_rel_meth putati 98.3 2.9E-06 6.3E-11 70.1 8.4 47 76-122 152-217 (251)
112 PRK14121 tRNA (guanine-N(7)-)- 98.3 1.1E-06 2.5E-11 76.4 6.0 74 49-123 122-237 (390)
113 PF00891 Methyltransf_2: O-met 98.3 2.2E-06 4.8E-11 70.1 7.5 66 48-122 99-200 (241)
114 PRK04266 fibrillarin; Provisio 98.3 2E-06 4.3E-11 70.0 7.0 36 76-120 140-175 (226)
115 PRK07402 precorrin-6B methylas 98.3 8.3E-06 1.8E-10 64.7 9.9 25 99-123 120-144 (196)
116 COG2518 Pcm Protein-L-isoaspar 98.3 2.3E-06 4.9E-11 68.3 6.6 70 39-122 61-170 (209)
117 COG4798 Predicted methyltransf 98.3 1.8E-06 3.8E-11 67.7 5.5 118 74-197 119-238 (238)
118 PF01739 CheR: CheR methyltran 98.2 1.7E-06 3.6E-11 68.9 5.3 53 63-121 123-175 (196)
119 COG2813 RsmC 16S RNA G1207 met 98.2 4.9E-06 1.1E-10 69.7 7.9 47 76-124 223-269 (300)
120 PLN02585 magnesium protoporphy 98.2 5.4E-06 1.2E-10 70.7 7.5 38 75-118 210-247 (315)
121 PRK14968 putative methyltransf 98.2 6.7E-06 1.4E-10 64.2 7.5 49 74-122 87-149 (188)
122 KOG1975 mRNA cap methyltransfe 98.2 5.5E-06 1.2E-10 69.7 6.7 76 42-121 110-237 (389)
123 COG4123 Predicted O-methyltran 98.2 3.6E-06 7.8E-11 68.9 5.5 74 48-121 43-170 (248)
124 PTZ00146 fibrillarin; Provisio 98.1 9.5E-06 2.1E-10 68.1 7.6 79 32-120 110-236 (293)
125 PF05891 Methyltransf_PK: AdoM 98.1 5E-06 1.1E-10 66.6 5.6 42 75-121 120-161 (218)
126 PF01135 PCMT: Protein-L-isoas 98.1 2.9E-06 6.3E-11 68.2 4.4 62 46-121 69-172 (209)
127 PRK10611 chemotaxis methyltran 98.1 1.1E-05 2.4E-10 67.8 7.8 41 75-120 221-261 (287)
128 PF03141 Methyltransf_29: Puta 98.1 1.5E-06 3.2E-11 77.0 2.1 47 68-121 173-219 (506)
129 PRK10901 16S rRNA methyltransf 98.0 2E-05 4.3E-10 70.0 8.5 77 47-123 242-374 (427)
130 PRK14904 16S rRNA methyltransf 98.0 1.7E-05 3.7E-10 70.8 8.0 24 100-123 356-379 (445)
131 TIGR00563 rsmB ribosomal RNA s 98.0 1.5E-05 3.3E-10 70.8 7.6 24 100-123 347-370 (426)
132 PRK14903 16S rRNA methyltransf 98.0 1.5E-05 3.3E-10 70.8 7.6 78 46-123 234-368 (431)
133 PRK14901 16S rRNA methyltransf 98.0 1.5E-05 3.2E-10 71.0 7.0 24 100-123 363-386 (434)
134 COG1352 CheR Methylase of chem 98.0 2.4E-05 5.2E-10 65.1 7.7 43 74-121 199-241 (268)
135 COG2890 HemK Methylase of poly 98.0 3.3E-05 7.2E-10 64.9 8.4 59 76-134 175-252 (280)
136 TIGR00446 nop2p NOL1/NOP2/sun 98.0 2.1E-05 4.6E-10 65.4 7.2 24 100-123 178-201 (264)
137 KOG2940 Predicted methyltransf 97.9 7E-06 1.5E-10 66.1 2.5 68 48-123 71-176 (325)
138 COG4627 Uncharacterized protei 97.9 7.2E-06 1.6E-10 62.1 2.2 65 52-121 5-86 (185)
139 PRK13943 protein-L-isoaspartat 97.9 2.8E-05 6E-10 66.5 6.1 33 76-121 148-180 (322)
140 KOG1269 SAM-dependent methyltr 97.9 1.8E-05 3.8E-10 68.7 4.7 72 43-122 104-216 (364)
141 KOG1661 Protein-L-isoaspartate 97.9 2.2E-05 4.8E-10 62.3 4.8 71 37-121 70-193 (237)
142 PRK00811 spermidine synthase; 97.9 3.1E-05 6.6E-10 65.2 5.9 43 75-120 148-190 (283)
143 PHA03411 putative methyltransf 97.8 5.2E-05 1.1E-09 63.2 7.0 71 49-121 64-183 (279)
144 PF07942 N2227: N2227-like pro 97.8 4.2E-05 9.2E-10 63.6 6.0 37 76-119 164-200 (270)
145 COG2519 GCD14 tRNA(1-methylade 97.8 0.00011 2.3E-09 60.2 8.1 64 46-123 91-197 (256)
146 PRK14902 16S rRNA methyltransf 97.8 5.7E-05 1.2E-09 67.4 7.0 23 101-123 359-381 (444)
147 PRK04457 spermidine synthase; 97.8 3.7E-05 7.9E-10 64.0 5.0 46 75-123 134-179 (262)
148 PLN02781 Probable caffeoyl-CoA 97.8 7.3E-05 1.6E-09 61.2 6.5 36 75-120 142-177 (234)
149 KOG1499 Protein arginine N-met 97.7 3.8E-05 8.1E-10 65.4 4.6 67 47-118 58-164 (346)
150 PF02390 Methyltransf_4: Putat 97.6 8.5E-05 1.8E-09 59.1 4.7 53 63-123 72-135 (195)
151 PF11968 DUF3321: Putative met 97.6 0.00034 7.4E-09 56.0 7.9 67 51-121 53-149 (219)
152 PHA03412 putative methyltransf 97.6 0.00028 6.2E-09 57.5 7.5 80 35-116 35-158 (241)
153 TIGR00417 speE spermidine synt 97.6 0.00012 2.6E-09 61.1 5.5 44 75-121 143-186 (270)
154 PF05185 PRMT5: PRMT5 arginine 97.6 5.1E-05 1.1E-09 67.7 3.0 49 63-118 246-294 (448)
155 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00013 2.9E-09 68.7 5.9 48 75-122 606-657 (702)
156 PRK01581 speE spermidine synth 97.6 0.00016 3.5E-09 62.5 5.9 45 75-121 224-268 (374)
157 KOG2899 Predicted methyltransf 97.5 0.00024 5.2E-09 57.8 6.1 44 74-120 163-208 (288)
158 smart00650 rADc Ribosomal RNA 97.5 0.0003 6.5E-09 54.4 6.1 41 47-88 11-88 (169)
159 PLN02366 spermidine synthase 97.5 0.00036 7.8E-09 59.4 6.7 42 75-119 163-204 (308)
160 PF10294 Methyltransf_16: Puta 97.4 0.00027 5.9E-09 55.1 5.4 40 75-121 117-156 (173)
161 PF02527 GidB: rRNA small subu 97.4 0.00025 5.4E-09 55.9 4.7 47 63-122 103-149 (184)
162 KOG2798 Putative trehalase [Ca 97.4 0.00048 1E-08 58.0 6.1 37 76-119 258-294 (369)
163 COG1041 Predicted DNA modifica 97.3 0.00082 1.8E-08 57.6 7.6 83 39-122 185-311 (347)
164 COG3963 Phospholipid N-methylt 97.3 0.0012 2.7E-08 50.8 7.5 81 39-124 36-159 (194)
165 PRK15128 23S rRNA m(5)C1962 me 97.3 0.00044 9.5E-09 60.9 5.9 47 75-123 291-341 (396)
166 PRK03612 spermidine synthase; 97.3 0.00027 5.8E-09 64.4 4.2 45 75-121 371-415 (521)
167 PF08704 GCD14: tRNA methyltra 97.3 0.00036 7.9E-09 57.5 4.5 65 46-123 37-148 (247)
168 PLN02672 methionine S-methyltr 97.2 0.00063 1.4E-08 66.4 6.3 28 94-121 251-278 (1082)
169 KOG3191 Predicted N6-DNA-methy 97.2 0.0017 3.7E-08 50.7 7.4 73 74-148 107-195 (209)
170 COG0220 Predicted S-adenosylme 97.2 0.00046 9.9E-09 56.2 4.1 22 101-122 144-165 (227)
171 COG2521 Predicted archaeal met 97.1 0.00069 1.5E-08 54.9 4.6 72 48-123 133-247 (287)
172 PLN02476 O-methyltransferase 97.1 0.00094 2E-08 55.9 5.5 35 76-120 193-227 (278)
173 KOG3987 Uncharacterized conser 97.1 0.0007 1.5E-08 53.9 4.1 39 75-120 167-206 (288)
174 COG4122 Predicted O-methyltran 97.1 0.0012 2.6E-08 53.4 5.4 37 74-120 129-165 (219)
175 COG5459 Predicted rRNA methyla 97.0 0.0011 2.3E-08 56.9 4.6 49 74-126 182-230 (484)
176 TIGR03439 methyl_EasF probable 97.0 0.0044 9.6E-08 53.0 8.4 38 78-119 157-195 (319)
177 PF12147 Methyltransf_20: Puta 97.0 0.0026 5.7E-08 53.2 6.7 66 75-144 207-277 (311)
178 PF01596 Methyltransf_3: O-met 96.9 0.0013 2.9E-08 52.7 4.7 35 76-120 120-154 (205)
179 KOG1500 Protein arginine N-met 96.9 0.0018 3.9E-08 55.2 5.7 69 43-118 170-279 (517)
180 PRK10909 rsmD 16S rRNA m(2)G96 96.9 0.002 4.3E-08 51.4 5.7 40 75-122 119-160 (199)
181 COG0357 GidB Predicted S-adeno 96.9 0.0025 5.3E-08 51.4 6.0 33 78-121 136-168 (215)
182 PRK11933 yebU rRNA (cytosine-C 96.9 0.003 6.4E-08 56.8 7.0 24 100-123 221-244 (470)
183 KOG1709 Guanidinoacetate methy 96.8 0.012 2.7E-07 47.3 8.8 42 73-121 165-206 (271)
184 KOG2904 Predicted methyltransf 96.7 0.0074 1.6E-07 50.1 7.4 50 73-122 218-286 (328)
185 PRK01544 bifunctional N5-gluta 96.7 0.0019 4.1E-08 58.7 4.2 42 73-122 413-463 (506)
186 KOG3178 Hydroxyindole-O-methyl 96.6 0.0061 1.3E-07 52.2 6.5 42 77-123 236-277 (342)
187 PF01728 FtsJ: FtsJ-like methy 96.5 0.0093 2E-07 46.5 6.8 48 76-125 90-143 (181)
188 PRK13168 rumA 23S rRNA m(5)U19 96.5 0.0049 1.1E-07 55.1 5.8 63 48-121 296-400 (443)
189 PLN02823 spermine synthase 96.5 0.0052 1.1E-07 52.9 5.5 45 75-120 174-219 (336)
190 PF09243 Rsm22: Mitochondrial 96.5 0.0072 1.6E-07 50.6 6.0 43 77-126 102-144 (274)
191 PLN02589 caffeoyl-CoA O-methyl 96.5 0.0046 1E-07 51.0 4.7 34 76-119 155-188 (247)
192 COG2263 Predicted RNA methylas 96.3 0.0097 2.1E-07 46.8 5.5 14 49-62 45-58 (198)
193 TIGR00478 tly hemolysin TlyA f 96.0 0.009 2E-07 48.7 4.3 24 39-62 63-88 (228)
194 PF03141 Methyltransf_29: Puta 95.9 0.014 3.1E-07 52.2 5.3 70 74-148 424-493 (506)
195 PRK03522 rumB 23S rRNA methylu 95.7 0.017 3.6E-07 49.4 4.7 14 49-62 173-186 (315)
196 PF08123 DOT1: Histone methyla 95.7 0.015 3.1E-07 46.7 3.9 35 77-119 122-156 (205)
197 COG0293 FtsJ 23S rRNA methylas 95.5 0.052 1.1E-06 43.4 6.5 74 46-123 42-161 (205)
198 PRK14896 ksgA 16S ribosomal RN 95.4 0.024 5.3E-07 46.9 4.6 16 47-62 27-42 (258)
199 TIGR00755 ksgA dimethyladenosi 95.4 0.06 1.3E-06 44.4 6.9 16 47-62 27-42 (253)
200 TIGR00479 rumA 23S rRNA (uraci 95.2 0.027 5.9E-07 50.1 4.4 15 48-62 291-305 (431)
201 TIGR02085 meth_trns_rumB 23S r 95.0 0.041 8.8E-07 48.2 5.0 14 49-62 233-246 (374)
202 COG0421 SpeE Spermidine syntha 94.9 0.047 1E-06 45.9 5.0 42 76-120 148-189 (282)
203 PRK04148 hypothetical protein; 94.9 0.076 1.7E-06 39.6 5.6 74 39-124 4-112 (134)
204 PF03602 Cons_hypoth95: Conser 94.9 0.016 3.4E-07 45.6 2.0 42 74-122 111-154 (183)
205 COG1092 Predicted SAM-dependen 94.9 0.035 7.5E-07 48.8 4.2 78 38-123 207-338 (393)
206 TIGR00095 RNA methyltransferas 94.9 0.065 1.4E-06 42.3 5.4 14 49-62 49-62 (189)
207 PF03492 Methyltransf_7: SAM d 94.9 0.11 2.4E-06 44.8 7.2 52 73-124 103-186 (334)
208 PF02384 N6_Mtase: N-6 DNA Met 94.7 0.1 2.3E-06 44.1 6.6 47 75-121 123-183 (311)
209 PF06859 Bin3: Bicoid-interact 94.7 0.042 9.1E-07 39.4 3.5 41 77-120 1-43 (110)
210 PRK00536 speE spermidine synth 94.7 0.13 2.9E-06 42.8 7.0 34 75-120 137-170 (262)
211 PRK00274 ksgA 16S ribosomal RN 94.6 0.026 5.7E-07 47.1 2.8 16 47-62 40-55 (272)
212 PF02475 Met_10: Met-10+ like- 94.6 0.03 6.4E-07 44.7 2.9 65 41-118 93-199 (200)
213 PLN02668 indole-3-acetate carb 94.6 0.13 2.9E-06 45.1 7.1 52 73-124 158-240 (386)
214 PRK11727 23S rRNA mA1618 methy 94.5 0.059 1.3E-06 46.2 4.6 14 49-62 114-127 (321)
215 KOG4589 Cell division protein 94.5 0.15 3.2E-06 40.3 6.3 77 46-125 66-188 (232)
216 COG3897 Predicted methyltransf 94.5 0.32 6.9E-06 38.7 8.2 72 39-119 67-176 (218)
217 COG0144 Sun tRNA and rRNA cyto 94.3 0.26 5.6E-06 42.9 8.2 25 99-123 266-290 (355)
218 PF01269 Fibrillarin: Fibrilla 94.2 0.22 4.9E-06 40.3 7.0 81 32-121 51-178 (229)
219 PF01564 Spermine_synth: Sperm 94.0 0.062 1.4E-06 44.3 3.6 42 77-121 150-191 (246)
220 KOG3420 Predicted RNA methylas 93.8 0.038 8.3E-07 41.8 1.9 39 49-88 48-125 (185)
221 PF01170 UPF0020: Putative RNA 93.5 0.09 1.9E-06 41.1 3.5 56 64-121 94-150 (179)
222 PRK04338 N(2),N(2)-dimethylgua 93.3 0.097 2.1E-06 46.0 3.9 35 75-120 123-157 (382)
223 PTZ00338 dimethyladenosine tra 93.0 0.11 2.4E-06 44.0 3.6 17 46-62 33-49 (294)
224 KOG2920 Predicted methyltransf 92.9 0.057 1.2E-06 45.1 1.7 37 77-120 196-233 (282)
225 PRK11524 putative methyltransf 92.7 0.16 3.4E-06 42.7 4.1 59 63-121 12-80 (284)
226 KOG3115 Methyltransferase-like 92.6 0.27 5.8E-06 39.4 5.0 21 101-121 163-183 (249)
227 TIGR02987 met_A_Alw26 type II 92.1 0.7 1.5E-05 42.2 7.9 19 104-122 179-197 (524)
228 KOG3201 Uncharacterized conser 92.1 0.29 6.3E-06 37.8 4.4 43 74-123 100-142 (201)
229 PF03269 DUF268: Caenorhabditi 91.8 0.14 3.1E-06 39.3 2.5 47 75-121 61-111 (177)
230 KOG1663 O-methyltransferase [S 91.4 0.68 1.5E-05 37.7 6.1 38 73-120 145-182 (237)
231 KOG2793 Putative N2,N2-dimethy 91.2 0.4 8.7E-06 39.5 4.8 38 78-122 163-200 (248)
232 PF10672 Methyltrans_SAM: S-ad 91.1 0.43 9.3E-06 40.3 5.0 88 33-123 108-240 (286)
233 KOG0820 Ribosomal RNA adenine 90.8 0.29 6.4E-06 40.8 3.6 18 45-62 54-71 (315)
234 COG0030 KsgA Dimethyladenosine 90.6 0.42 9E-06 39.7 4.3 30 33-62 13-43 (259)
235 COG0742 N6-adenine-specific me 90.3 0.56 1.2E-05 37.0 4.6 40 77-122 114-155 (187)
236 KOG2915 tRNA(1-methyladenosine 90.3 0.73 1.6E-05 38.5 5.4 63 46-121 102-210 (314)
237 PF04672 Methyltransf_19: S-ad 89.9 0.75 1.6E-05 38.3 5.3 40 80-123 153-192 (267)
238 PRK13699 putative methylase; P 89.7 0.48 1E-05 38.5 4.0 49 72-120 15-71 (227)
239 PRK11760 putative 23S rRNA C24 89.4 0.87 1.9E-05 39.4 5.5 56 47-114 209-296 (357)
240 PF01189 Nol1_Nop2_Fmu: NOL1/N 89.3 0.4 8.6E-06 40.4 3.3 25 99-123 193-221 (283)
241 PF06460 NSP13: Coronavirus NS 89.2 1.4 3E-05 36.7 6.2 110 38-150 47-199 (299)
242 PF11899 DUF3419: Protein of u 89.0 0.88 1.9E-05 40.0 5.4 48 73-125 291-338 (380)
243 PF07091 FmrO: Ribosomal RNA m 88.5 0.76 1.7E-05 37.9 4.4 64 45-123 101-164 (251)
244 TIGR00308 TRM1 tRNA(guanine-26 87.8 0.51 1.1E-05 41.3 3.1 34 76-120 113-146 (374)
245 KOG1596 Fibrillarin and relate 87.5 1.7 3.6E-05 35.9 5.6 18 45-62 152-169 (317)
246 COG2520 Predicted methyltransf 87.4 1.4 3.1E-05 38.0 5.6 73 41-125 180-293 (341)
247 COG0500 SmtA SAM-dependent met 87.3 2.1 4.6E-05 30.2 5.8 40 76-123 118-157 (257)
248 COG1189 Predicted rRNA methyla 87.1 2 4.3E-05 35.2 5.9 34 77-120 144-177 (245)
249 KOG2198 tRNA cytosine-5-methyl 86.1 2 4.4E-05 37.3 5.7 24 100-123 275-298 (375)
250 PRK11783 rlmL 23S rRNA m(2)G24 85.6 2.3 4.9E-05 40.5 6.4 45 76-123 302-349 (702)
251 KOG1122 tRNA and rRNA cytosine 85.0 1.6 3.4E-05 38.7 4.6 25 99-123 349-373 (460)
252 PF03059 NAS: Nicotianamine sy 84.4 2.1 4.5E-05 35.9 5.0 51 64-121 180-230 (276)
253 PF07757 AdoMet_MTase: Predict 84.1 0.6 1.3E-05 33.4 1.4 14 49-62 58-71 (112)
254 TIGR00006 S-adenosyl-methyltra 83.0 1.8 3.8E-05 36.9 4.0 30 98-127 217-246 (305)
255 COG0275 Predicted S-adenosylme 82.8 2.1 4.5E-05 36.4 4.3 31 98-128 221-251 (314)
256 COG1064 AdhP Zn-dependent alco 82.7 2.5 5.3E-05 36.6 4.9 33 77-123 229-261 (339)
257 PF10354 DUF2431: Domain of un 82.3 4.5 9.8E-05 31.2 5.8 59 63-123 58-127 (166)
258 COG1889 NOP1 Fibrillarin-like 82.3 4.5 9.8E-05 32.5 5.8 81 31-120 53-179 (231)
259 PF04816 DUF633: Family of unk 81.7 7.1 0.00015 31.2 6.9 53 78-141 67-119 (205)
260 PRK00050 16S rRNA m(4)C1402 me 81.0 2.3 5E-05 36.1 4.0 31 98-128 213-243 (296)
261 COG2384 Predicted SAM-dependen 80.9 10 0.00022 30.7 7.4 88 42-142 9-139 (226)
262 COG0286 HsdM Type I restrictio 79.6 10 0.00022 34.5 8.0 50 12-62 145-199 (489)
263 COG4076 Predicted RNA methylas 79.6 1.5 3.3E-05 34.8 2.3 61 51-119 34-133 (252)
264 KOG1099 SAM-dependent methyltr 78.8 1.1 2.3E-05 36.7 1.3 58 63-120 94-162 (294)
265 PF06962 rRNA_methylase: Putat 77.6 4.2 9.1E-05 30.6 4.1 45 76-123 45-94 (140)
266 PF01795 Methyltransf_5: MraW 77.5 1.9 4.2E-05 36.8 2.5 30 98-127 218-247 (310)
267 KOG0822 Protein kinase inhibit 73.7 3.6 7.9E-05 37.6 3.3 54 63-122 426-479 (649)
268 COG4262 Predicted spermidine s 73.7 7.2 0.00016 34.3 5.0 22 99-120 385-406 (508)
269 COG0116 Predicted N6-adenine-s 72.0 12 0.00026 32.9 6.0 60 63-123 286-346 (381)
270 PF13679 Methyltransf_32: Meth 69.3 2.7 5.9E-05 31.2 1.4 15 48-62 24-38 (141)
271 PF13578 Methyltransf_24: Meth 69.0 6.9 0.00015 27.1 3.4 40 74-121 66-105 (106)
272 PF00398 RrnaAD: Ribosomal RNA 67.3 22 0.00047 29.3 6.5 15 48-62 29-43 (262)
273 COG4301 Uncharacterized conser 65.0 23 0.00049 29.6 5.9 34 95-128 167-201 (321)
274 PF11599 AviRa: RRNA methyltra 64.3 17 0.00036 29.6 4.9 45 76-120 167-213 (246)
275 PF11312 DUF3115: Protein of u 63.0 6 0.00013 33.8 2.3 43 78-122 201-243 (315)
276 KOG1562 Spermidine synthase [A 62.4 18 0.00039 30.9 5.0 45 74-121 192-236 (337)
277 PF01555 N6_N4_Mtase: DNA meth 61.5 6.8 0.00015 30.8 2.4 24 98-121 33-56 (231)
278 PF05971 Methyltransf_10: Prot 57.9 14 0.0003 31.4 3.7 16 74-89 174-189 (299)
279 TIGR00027 mthyl_TIGR00027 meth 57.0 86 0.0019 25.9 8.3 42 77-123 158-199 (260)
280 PF08484 Methyltransf_14: C-me 56.3 17 0.00037 27.8 3.7 70 39-119 57-157 (160)
281 TIGR01444 fkbM_fam methyltrans 56.0 5.9 0.00013 29.0 1.1 12 52-63 1-12 (143)
282 KOG2671 Putative RNA methylase 55.5 39 0.00084 29.6 5.9 76 46-121 205-354 (421)
283 TIGR02143 trmA_only tRNA (urac 53.7 11 0.00023 32.8 2.5 13 50-62 198-210 (353)
284 PF10237 N6-adenineMlase: Prob 49.9 39 0.00084 26.0 4.7 41 75-122 84-124 (162)
285 PRK05031 tRNA (uracil-5-)-meth 48.1 14 0.0003 32.2 2.2 21 42-62 198-219 (362)
286 PF06016 Reovirus_L2: Reovirus 47.4 28 0.00062 35.2 4.4 65 50-116 823-920 (1289)
287 PRK09880 L-idonate 5-dehydroge 46.9 50 0.0011 28.0 5.5 21 102-122 247-267 (343)
288 PF07101 DUF1363: Protein of u 46.7 7.5 0.00016 27.1 0.3 10 53-62 6-15 (124)
289 PRK01747 mnmC bifunctional tRN 43.4 45 0.00097 31.4 5.0 19 101-119 186-204 (662)
290 PF10006 DUF2249: Uncharacteri 42.7 76 0.0016 20.2 4.7 38 98-135 10-47 (69)
291 KOG2539 Mitochondrial/chloropl 42.0 61 0.0013 29.4 5.3 47 74-124 271-318 (491)
292 COG3129 Predicted SAM-dependen 40.7 47 0.001 27.5 4.0 15 75-89 151-165 (292)
293 PF00107 ADH_zinc_N: Zinc-bind 40.1 31 0.00068 24.4 2.8 37 75-124 56-92 (130)
294 PRK00050 16S rRNA m(4)C1402 me 39.1 34 0.00075 29.0 3.2 24 39-62 8-32 (296)
295 cd01842 SGNH_hydrolase_like_5 38.0 93 0.002 24.5 5.2 51 73-123 46-101 (183)
296 PF13602 ADH_zinc_N_2: Zinc-bi 37.8 9.8 0.00021 27.1 -0.2 35 75-121 17-51 (127)
297 COG3414 SgaB Phosphotransferas 37.5 1.4E+02 0.003 20.7 5.6 12 76-87 48-59 (93)
298 PF14740 DUF4471: Domain of un 36.6 40 0.00086 28.6 3.2 35 75-121 220-254 (289)
299 PF07090 DUF1355: Protein of u 30.9 81 0.0018 24.6 3.9 42 76-121 66-108 (177)
300 PF05430 Methyltransf_30: S-ad 30.5 44 0.00096 24.4 2.2 60 50-126 29-93 (124)
301 COG1565 Uncharacterized conser 30.3 58 0.0013 28.5 3.2 23 101-124 222-244 (370)
302 COG3315 O-Methyltransferase in 30.0 2.8E+02 0.0061 23.5 7.3 42 75-121 168-209 (297)
303 KOG4058 Uncharacterized conser 29.9 2.4E+02 0.0051 21.8 6.0 15 48-62 71-85 (199)
304 PRK09489 rsmC 16S ribosomal RN 29.2 1.2E+02 0.0026 26.3 5.0 40 76-123 75-114 (342)
305 PF09445 Methyltransf_15: RNA 26.9 22 0.00048 27.4 0.1 11 52-62 2-12 (163)
306 PF02005 TRM: N2,N2-dimethylgu 26.9 48 0.001 29.2 2.2 37 74-121 118-154 (377)
307 COG0604 Qor NADPH:quinone redu 26.1 93 0.002 26.6 3.8 35 76-124 210-244 (326)
308 PF01555 N6_N4_Mtase: DNA meth 25.2 52 0.0011 25.6 2.0 24 39-62 181-204 (231)
309 PF02636 Methyltransf_28: Puta 24.4 70 0.0015 26.1 2.6 13 51-63 20-32 (252)
310 PF08468 MTS_N: Methyltransfer 23.7 1.6E+02 0.0035 22.3 4.4 40 76-123 68-107 (155)
311 KOG1269 SAM-dependent methyltr 22.7 76 0.0017 27.8 2.7 68 46-123 222-315 (364)
312 TIGR02822 adh_fam_2 zinc-bindi 22.7 3.5E+02 0.0075 22.7 6.7 21 102-122 235-255 (329)
313 cd00423 Pterin_binding Pterin 22.3 64 0.0014 26.6 2.0 25 38-62 25-49 (258)
314 PRK10310 PTS system galactitol 21.9 1.3E+02 0.0028 20.6 3.2 37 76-112 49-93 (94)
315 COG2813 RsmC 16S RNA G1207 met 21.6 1.9E+02 0.0041 24.7 4.7 38 77-122 37-74 (300)
316 PF13580 SIS_2: SIS domain; PD 20.9 97 0.0021 22.7 2.6 82 39-123 24-113 (138)
317 PRK09548 PTS system ascorbate- 20.7 1.3E+02 0.0028 28.3 3.8 38 48-87 504-564 (602)
318 cd00740 MeTr MeTr subgroup of 20.5 73 0.0016 26.3 2.0 24 39-62 28-51 (252)
319 KOG3350 Uncharacterized conser 20.5 1.2E+02 0.0025 24.1 2.9 40 75-121 133-172 (217)
No 1
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.71 E-value=8.7e-18 Score=134.89 Aligned_cols=168 Identities=20% Similarity=0.297 Sum_probs=116.5
Q ss_pred CCCCCChhhHHHHhhccCCcccccccccchH-HHHHhhCC-----CCCeEEEEcCCccc---------------------
Q 028050 10 TYNYGDALYWNARYVQEGGSFDWYQRYSALR-PFVRKYIP-----TSSRVLMVGCGNAH--------------------- 62 (214)
Q Consensus 10 ~~~~~~~~yW~~~y~~~~~~~ew~~~~~~l~-~~l~~~~~-----~~~~iLdiGcG~G~--------------------- 62 (214)
..+..+.+-|...|......|.-++..+.++ .++..... ++.+|||||||.|.
T Consensus 14 ~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~ 93 (243)
T COG2227 14 YKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKP 93 (243)
T ss_pred HHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHH
Confidence 3344456678888887777777777766555 34444444 78999999999998
Q ss_pred -----------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028050 63 -----------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 125 (214)
Q Consensus 63 -----------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 125 (214)
.+..++++. ...++||+|+|..+++|+ +++..+++++.+.+||||.++++|.+..
T Consensus 94 I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEHv-------~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 94 IEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEHV-------PDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred HHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHcc-------CCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 122223333 334799999999999999 9999999999999999999999987632
Q ss_pred -----------hhhhhhccccccceEEEEEe------eCCCCccCCCCCCCCCcccccCcccCCCCCCCccccCCCCCcE
Q 028050 126 -----------KARMIHLKWKVYNWKIELYI------IARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSH 188 (214)
Q Consensus 126 -----------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 188 (214)
++.+.++...++++....+. +...++... ...++.++|....|.+.. +..+|
T Consensus 166 ~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~------~~~g~~y~p~~~~~~l~~-----~~~vN 234 (243)
T COG2227 166 LKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII------DRKGLTYNPLTNSWKLSN-----DVSVN 234 (243)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE------eecceEeccccceEEecC-----Cccce
Confidence 12344454555555432222 112233322 236778888888887776 55899
Q ss_pred EEEEEEec
Q 028050 189 FIYVCKKM 196 (214)
Q Consensus 189 yi~~~~K~ 196 (214)
|++.++|+
T Consensus 235 y~~~~~~~ 242 (243)
T COG2227 235 YMVHAQRP 242 (243)
T ss_pred EEEEeecC
Confidence 99999986
No 2
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.61 E-value=3.2e-16 Score=133.36 Aligned_cols=132 Identities=20% Similarity=0.282 Sum_probs=90.8
Q ss_pred CCCeEEEEcCCccc----------------------------------------eeeeccCCccCCCCcceEEEeccchh
Q 028050 49 TSSRVLMVGCGNAH----------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLD 88 (214)
Q Consensus 49 ~~~~iLdiGcG~G~----------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~ 88 (214)
++.+|||||||+|. .++|+++++ +.+++||+|++.++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHHH
Confidence 45699999999998 223334555 5677999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCchh-----------hhhhccccccceEEE------EEeeCCCCc
Q 028050 89 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA-----------RMIHLKWKVYNWKIE------LYIIARPGF 151 (214)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~------~~~~~~~~~ 151 (214)
|+ .++..+++++.++|||||.+++.+.+.... ...++......|... ...+...+|
T Consensus 210 Hv-------~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 210 HV-------ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred hc-------CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 99 889999999999999999999988764311 111122222223210 111223344
Q ss_pred cCCCCCCCCCcccccCcccCCCCCCCccccCCCCCcEEEEEEEecCCC
Q 028050 152 EKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDM 199 (214)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~yi~~~~K~~~~ 199 (214)
... ...++-++|+...|.+.. +..+||++.++|..+.
T Consensus 283 ~i~------~~~G~~~~p~~~~w~~~~-----~~~~ny~~~~~k~~~~ 319 (322)
T PLN02396 283 DVK------EMAGFVYNPITGRWLLSD-----DISVNYIAYGTKRKDL 319 (322)
T ss_pred eEE------EEeeeEEcCcCCeEEecC-----CCceeehhheecCccC
Confidence 433 236677788888888766 5699999999997643
No 3
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.58 E-value=8.6e-15 Score=112.67 Aligned_cols=146 Identities=27% Similarity=0.470 Sum_probs=102.5
Q ss_pred CCCCCCCCChhhHHHHhhccCCccc--------ccccccc--hHHHHHhh-----CCCCC-eEEEEcCCccc--------
Q 028050 7 SCNTYNYGDALYWNARYVQEGGSFD--------WYQRYSA--LRPFVRKY-----IPTSS-RVLMVGCGNAH-------- 62 (214)
Q Consensus 7 ~~~~~~~~~~~yW~~~y~~~~~~~e--------w~~~~~~--l~~~l~~~-----~~~~~-~iLdiGcG~G~-------- 62 (214)
....+.+|.++||++.|..+..+|. |+..... +.+++..+ +...+ +|||+|||+|.
T Consensus 9 dl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e 88 (227)
T KOG1271|consen 9 DLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE 88 (227)
T ss_pred cccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh
Confidence 3557889999999999998866653 7775432 33444332 33444 99999999998
Q ss_pred ----------------------------------eeeeccCCccCCCCcceEEEeccchhhhcCC-CCChhHHHHHHHHH
Q 028050 63 ----------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCG-TNAPISASQMLGEV 107 (214)
Q Consensus 63 ----------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~-~~~~~~~~~~l~~~ 107 (214)
.+.|+.+.. +..+.||+|+.+++++++.-. ......+..++..+
T Consensus 89 gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v 167 (227)
T KOG1271|consen 89 GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSV 167 (227)
T ss_pred cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceeeeecCCCCcccceeeehhhH
Confidence 567777665 788899999999999999744 33334457899999
Q ss_pred HHhccCCcEEEEEEcCC-chhhhhhccccccceEEEEEeeCCCCccCCCC
Q 028050 108 SRLLKPGGIYMLITYGD-PKARMIHLKWKVYNWKIELYIIARPGFEKPGG 156 (214)
Q Consensus 108 ~~~LkpgG~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
.+.|+|||+++|.+-+- .......+.... -.....++.+.|.+.+.
T Consensus 168 ~~ll~~~gifvItSCN~T~dELv~~f~~~~---f~~~~tvp~ptF~FgG~ 214 (227)
T KOG1271|consen 168 EKLLSPGGIFVITSCNFTKDELVEEFENFN---FEYLSTVPTPTFMFGGS 214 (227)
T ss_pred hhccCCCcEEEEEecCccHHHHHHHHhcCC---eEEEEeeccceEEeccc
Confidence 99999999998877542 222222232111 13456788888877655
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=8.4e-15 Score=119.11 Aligned_cols=71 Identities=32% Similarity=0.592 Sum_probs=66.3
Q ss_pred CCCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEEEeccc
Q 028050 48 PTSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAVIDKGT 86 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~ 86 (214)
.+|.+|||||||||. +++|++++| |++++||+|.+...
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg 128 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG 128 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence 378999999999998 588999999 99999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028050 87 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 126 (214)
Q Consensus 87 l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 126 (214)
|+.+ .++.++|+|+.|||||||++++.+++.+.
T Consensus 129 lrnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 129 LRNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hhcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 9999 89999999999999999999999988653
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.47 E-value=4.8e-14 Score=115.13 Aligned_cols=72 Identities=36% Similarity=0.639 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcCCccc------------------------------------------eeeeccCCccCCCCcceEEEec
Q 028050 47 IPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFFEDESFDAVIDK 84 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~~~~~fD~V~~~ 84 (214)
..++.+|||+|||||. +++|++++| +++++||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHH
Confidence 5678899999999997 678999999 999999999999
Q ss_pred cchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028050 85 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 126 (214)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 126 (214)
..++.+ .++.+.++|++|+|||||++++.+++.+.
T Consensus 124 fglrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 124 FGLRNF-------PDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp S-GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred hhHHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 999999 88999999999999999999999988654
No 6
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.45 E-value=5.1e-13 Score=116.83 Aligned_cols=117 Identities=42% Similarity=0.823 Sum_probs=103.0
Q ss_pred CCCCCCCCCChhhHHHHhhccC-CcccccccccchHHHHHhhCCCCC-eEEEEcCCccc---------------------
Q 028050 6 SSCNTYNYGDALYWNARYVQEG-GSFDWYQRYSALRPFVRKYIPTSS-RVLMVGCGNAH--------------------- 62 (214)
Q Consensus 6 ~~~~~~~~~~~~yW~~~y~~~~-~~~ew~~~~~~l~~~l~~~~~~~~-~iLdiGcG~G~--------------------- 62 (214)
.|...-.|++.+||+.+|.... ..++||.++..+...+-+++.+.. ++|-+|||+..
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V 82 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSV 82 (482)
T ss_pred CcccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHH
Confidence 4566678999999999999885 779999999999988888888877 99999999987
Q ss_pred ------------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChh---HHHHHHHHHHHhccCCcEEEEEE
Q 028050 63 ------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI---SASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 63 ------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
...|+..+. |++++||+|+.++++++++++....- .....+.+++|+|++||+++.++
T Consensus 83 ~V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 83 VVAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred HHHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 667888888 99999999999999999998865444 77889999999999999999988
Q ss_pred cC
Q 028050 122 YG 123 (214)
Q Consensus 122 ~~ 123 (214)
+.
T Consensus 162 l~ 163 (482)
T KOG2352|consen 162 LV 163 (482)
T ss_pred ee
Confidence 74
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.42 E-value=2.3e-13 Score=94.63 Aligned_cols=49 Identities=39% Similarity=0.628 Sum_probs=44.0
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
.+.|+++++ +++++||+|++..+++|+ +++.++++++.|+|||||++++
T Consensus 47 ~~~d~~~l~-~~~~sfD~v~~~~~~~~~-------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 47 RQGDAEDLP-FPDNSFDVVFSNSVLHHL-------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EESBTTSSS-S-TT-EEEEEEESHGGGS-------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeehHHhCc-cccccccccccccceeec-------cCHHHHHHHHHHHcCcCeEEeC
Confidence 677888998 999999999999999999 8999999999999999999975
No 8
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.40 E-value=1.8e-12 Score=104.56 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=72.3
Q ss_pred hhHHHHhhccCCcccccccccchHHHHHhh-CCCCCeEEEEcCCccc-----------------------e---------
Q 028050 17 LYWNARYVQEGGSFDWYQRYSALRPFVRKY-IPTSSRVLMVGCGNAH-----------------------L--------- 63 (214)
Q Consensus 17 ~yW~~~y~~~~~~~ew~~~~~~l~~~l~~~-~~~~~~iLdiGcG~G~-----------------------~--------- 63 (214)
+||+++|+...-.|+--.....+.+++... .+++.+|||+|||.|. .
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~ 80 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTP 80 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCc
Confidence 589999988754332222233444555542 2577899999999998 0
Q ss_pred -------------------eeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 64 -------------------QMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 64 -------------------~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
++|+.+++....+.||.|++..+++|+ +++....+++.+.++|||||+++++++.
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 81 TVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 223333221113579999999999988 7788999999999999999998887764
No 9
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=5.7e-12 Score=101.95 Aligned_cols=103 Identities=22% Similarity=0.345 Sum_probs=72.9
Q ss_pred ChhhHHHHhhccCCcccccccccchHHHHHh-hCCCCCeEEEEcCCccc-------------------------------
Q 028050 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRK-YIPTSSRVLMVGCGNAH------------------------------- 62 (214)
Q Consensus 15 ~~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~-~~~~~~~iLdiGcG~G~------------------------------- 62 (214)
++++|+++|+++...|.--...+.+.+.+.. .++++.+|||+|||.|.
T Consensus 2 ~~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l 81 (218)
T PRK13255 2 DPDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGL 81 (218)
T ss_pred CHhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCC
Confidence 4689999999886443222223334454442 34567899999999998
Q ss_pred --------------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 63 --------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 63 --------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.++|+.++.......||+|++..+++|+ +.+...++++.+.++|+|||+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 82 TPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred CccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 0233333321123589999999999998 778999999999999999998666554
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=2e-12 Score=107.42 Aligned_cols=71 Identities=27% Similarity=0.502 Sum_probs=61.8
Q ss_pred CCCCCeEEEEcCCccc---------------------------------------------eeeeccCCccCCCCcceEE
Q 028050 47 IPTSSRVLMVGCGNAH---------------------------------------------LQMDVRDMSFFEDESFDAV 81 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~---------------------------------------------~~~d~~~~~~~~~~~fD~V 81 (214)
++++.+|||+|||+|. +++|+++++ +++++||+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEE
Confidence 4578899999999997 234556677 888899999
Q ss_pred EeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028050 82 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 125 (214)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 125 (214)
++..+++++ .++.++++++.|+|||||+++++++..+
T Consensus 150 ~~~~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 150 TMGYGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred EEecccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 999999999 7899999999999999999999988754
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.33 E-value=5.8e-12 Score=108.40 Aligned_cols=68 Identities=26% Similarity=0.500 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEEEeccc
Q 028050 48 PTSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAVIDKGT 86 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~ 86 (214)
.++.+|||||||+|. .++|+.+++ +++++||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECCc
Confidence 467899999999997 345667777 88899999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 87 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 87 l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
++|+ .+..++++++.|+|||||+++++++.
T Consensus 196 ~~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHM-------PDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhcc-------CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999 78999999999999999999998754
No 12
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.33 E-value=7.6e-14 Score=113.22 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=72.5
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCc-----------hhhhhhccccccceEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP-----------KARMIHLKWKVYNWKIELY 144 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 144 (214)
+.||+|+|+.+++|+ .++..+++.+.++|||||++++++.+.. ...+.......+.|+..+.
T Consensus 157 ~~fDaVvcsevleHV-------~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~ 229 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHV-------KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFIN 229 (282)
T ss_pred cccceeeeHHHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCC
Confidence 469999999999999 9999999999999999999999886532 1223333344555553322
Q ss_pred eeCCCCccCCCCCCCCCcccccCcccCCCCCCCccccCCCCCcEEEEEEEecC
Q 028050 145 IIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMN 197 (214)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~yi~~~~K~~ 197 (214)
......+-.........+.++-++|....|.+.. +...+|...|.|..
T Consensus 230 p~e~~~~l~~~~~~v~~v~G~~y~p~s~~w~~~~-----~~~~~~~~~avk~~ 277 (282)
T KOG1270|consen 230 PEELTSILNANGAQVNDVVGEVYNPISGQWLWSK-----NTSLNYGIKAVKRK 277 (282)
T ss_pred HHHHHHHHHhcCcchhhhhccccccccceeEecc-----cchhhHHHHHHHHH
Confidence 2111111111122345567778888888888877 34666766555543
No 13
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.32 E-value=2.6e-12 Score=100.93 Aligned_cols=57 Identities=30% Similarity=0.414 Sum_probs=52.6
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 126 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 126 (214)
++++.+++++++++++|.|++..+|..+ +++.+.|+++.|+|+|||+++++++....
T Consensus 131 vva~ge~l~~l~d~s~DtVV~TlvLCSv-------e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 131 VVADGENLPQLADGSYDTVVCTLVLCSV-------EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred EeechhcCcccccCCeeeEEEEEEEecc-------CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 7788899998899999999999999988 99999999999999999999999987543
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.29 E-value=5.2e-12 Score=96.35 Aligned_cols=70 Identities=37% Similarity=0.649 Sum_probs=58.3
Q ss_pred CCCCCeEEEEcCCccc------------eeeecc-----------------CCccCCCCcceEEEeccchhhhcCCCCCh
Q 028050 47 IPTSSRVLMVGCGNAH------------LQMDVR-----------------DMSFFEDESFDAVIDKGTLDSLMCGTNAP 97 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~------------~~~d~~-----------------~~~~~~~~~fD~V~~~~~l~~~~~~~~~~ 97 (214)
.+++.+|||||||+|. ...|.. ... .++++||+|++..+++|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~------- 91 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPP-FPDGSFDLIICNDVLEHL------- 91 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHH-CHSSSEEEEEEESSGGGS-------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhh-ccccchhhHhhHHHHhhc-------
Confidence 5678899999999998 222221 222 467899999999999999
Q ss_pred hHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 98 ISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 98 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
.++..+++++.++|||||++++.+...
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 799999999999999999999988764
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.28 E-value=2.5e-11 Score=100.90 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=63.4
Q ss_pred hHHHHHh-hCCCCCeEEEEcCCccc--------------------------------------eeeeccCCccCCCCcce
Q 028050 39 LRPFVRK-YIPTSSRVLMVGCGNAH--------------------------------------LQMDVRDMSFFEDESFD 79 (214)
Q Consensus 39 l~~~l~~-~~~~~~~iLdiGcG~G~--------------------------------------~~~d~~~~~~~~~~~fD 79 (214)
...++.. .++++.+|||||||+|. .+.|+.+.+ +++++||
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~-~~~~~FD 119 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD-FPENTFD 119 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC-CCCCCeE
Confidence 4445554 35788999999999996 235555556 7788999
Q ss_pred EEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 80 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 80 ~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+|++..++.|+ +..++..++++++++|||||+++++++.
T Consensus 120 ~V~s~~~l~h~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 120 MIYSRDAILHL-----SYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEEhhhHHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999888887 4458999999999999999999998764
No 16
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.23 E-value=2.3e-11 Score=98.45 Aligned_cols=56 Identities=29% Similarity=0.513 Sum_probs=51.2
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 126 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 126 (214)
+.+|++++| |++++||+..+.+.+..+ .++.+.+++++|||||||++.+..++...
T Consensus 164 ~~~dAE~Lp-Fdd~s~D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 164 VEGDAEDLP-FDDDSFDAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred EeCCcccCC-CCCCcceeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 567999999 999999999999888877 89999999999999999999999988554
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=1.4e-11 Score=101.91 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=61.0
Q ss_pred hHHHHHhhCCCCCeEEEEcCCccc----------------------------------------eeeeccCCccCCCCcc
Q 028050 39 LRPFVRKYIPTSSRVLMVGCGNAH----------------------------------------LQMDVRDMSFFEDESF 78 (214)
Q Consensus 39 l~~~l~~~~~~~~~iLdiGcG~G~----------------------------------------~~~d~~~~~~~~~~~f 78 (214)
+..++.....++.+|||+|||+|. +++|+.++..+.+++|
T Consensus 34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 334454433556799999999998 2234444432456799
Q ss_pred eEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 79 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 79 D~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
|+|++..+++|+ .++..+++++.++|||||+++++.++.
T Consensus 114 D~V~~~~vl~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 114 DLILFHAVLEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CEEEehhHHHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 999999999999 788999999999999999998877664
No 18
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.23 E-value=7.7e-11 Score=95.47 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=80.4
Q ss_pred CCChhhHHHHhhccCCcccccccccchHHHHHhh-CCCCCeEEEEcCCccc-----------------------------
Q 028050 13 YGDALYWNARYVQEGGSFDWYQRYSALRPFVRKY-IPTSSRVLMVGCGNAH----------------------------- 62 (214)
Q Consensus 13 ~~~~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~~-~~~~~~iLdiGcG~G~----------------------------- 62 (214)
..+.+||+++|+++...|+--...+.+...+... .+++.+||..|||.|.
T Consensus 6 ~~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~ 85 (226)
T PRK13256 6 TNNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQN 85 (226)
T ss_pred cCCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHc
Confidence 4568899999999976664433333444555433 3456899999999998
Q ss_pred ----------------------eeeeccCCcc--CCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEE
Q 028050 63 ----------------------LQMDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 118 (214)
Q Consensus 63 ----------------------~~~d~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 118 (214)
.++|+.+++. -..+.||+|+...++.++ +++.+.++++.+.++|+|||.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 86 TINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred CCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcEEE
Confidence 3455555541 012579999999999999 88899999999999999999999
Q ss_pred EEEcC
Q 028050 119 LITYG 123 (214)
Q Consensus 119 ~~~~~ 123 (214)
++++.
T Consensus 161 ll~~~ 165 (226)
T PRK13256 161 LLVME 165 (226)
T ss_pred EEEEe
Confidence 98764
No 19
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.22 E-value=2e-11 Score=98.74 Aligned_cols=103 Identities=27% Similarity=0.451 Sum_probs=78.6
Q ss_pred ChhhHHHHhhccCCcccccccccchHHHHHh-hCCCCCeEEEEcCCccc-------------------------------
Q 028050 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRK-YIPTSSRVLMVGCGNAH------------------------------- 62 (214)
Q Consensus 15 ~~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~-~~~~~~~iLdiGcG~G~------------------------------- 62 (214)
+.++|+++|+++...|+.....+.+.+++.. ..+++.+||..|||.|.
T Consensus 2 ~~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~ 81 (218)
T PF05724_consen 2 DPEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNL 81 (218)
T ss_dssp HHHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTT
T ss_pred CHHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhcc
Confidence 3689999999998888777777778888776 35567799999999998
Q ss_pred --------------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 63 --------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 63 --------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.++|+.+++.-..++||+|+...+|.++ +++.+.++.+.+.++|+|||.++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 82 EPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp EEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred CCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 2456666652222479999999999999 889999999999999999999555554
No 20
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.22 E-value=4.6e-11 Score=98.44 Aligned_cols=68 Identities=25% Similarity=0.418 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCccc----------------------------------eeeeccCCccCCCCcceEEEeccchhhhcCCC
Q 028050 49 TSSRVLMVGCGNAH----------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 94 (214)
Q Consensus 49 ~~~~iLdiGcG~G~----------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~ 94 (214)
+..+|||+|||+|. +++|+++++ +++++||+|+++.+++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~V~s~~~l~~~---- 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-LATATFDLAWSNLAVQWC---- 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc-CCCCcEEEEEECchhhhc----
Confidence 45799999999996 456777777 788899999999999888
Q ss_pred CChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 95 NAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 95 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
.++..++.++.++|+|||.++++++..
T Consensus 117 ---~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 ---GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred ---CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 789999999999999999999988664
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.21 E-value=5.7e-11 Score=94.65 Aligned_cols=92 Identities=23% Similarity=0.487 Sum_probs=64.2
Q ss_pred CChhhHHHHhhccCCcccccccccchHHHHHhhCCCCCeEEEEcCCccc-------------------------------
Q 028050 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNAH------------------------------- 62 (214)
Q Consensus 14 ~~~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~~~~~~~~iLdiGcG~G~------------------------------- 62 (214)
.+..||.+.|.....+ +.+.+.+. ..++.+|||+|||+|.
T Consensus 4 ~~~~~~~~~~~~~~~~-------~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~ 74 (197)
T PRK11207 4 RDENYFTDKYGLTRTH-------SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAA 74 (197)
T ss_pred chHHHHHHhcCCCCCh-------HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4566777777644221 22333332 2356799999999998
Q ss_pred --------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 63 --------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 63 --------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+.|+.+++ + +++||+|++..+++++ +..+...+++++.++|||||++++++
T Consensus 75 ~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~~-----~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 75 ENLDNLHTAVVDLNNLT-F-DGEYDFILSTVVLMFL-----EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCCCcceEEecChhhCC-c-CCCcCEEEEecchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 223444444 3 4579999999999877 55688999999999999999976654
No 22
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=5.4e-11 Score=95.60 Aligned_cols=112 Identities=22% Similarity=0.398 Sum_probs=79.4
Q ss_pred CChhhHHHHhhccCCcccccccccchHHHHHhhC----CCCCeEEEEcCCccc---------------------------
Q 028050 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKYI----PTSSRVLMVGCGNAH--------------------------- 62 (214)
Q Consensus 14 ~~~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~~~----~~~~~iLdiGcG~G~--------------------------- 62 (214)
..+.||+..|.....+| +.....+..-..... ++..+||+||||.|.
T Consensus 34 ~~~k~wD~fy~~~~~rF--fkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~ 111 (264)
T KOG2361|consen 34 EASKYWDTFYKIHENRF--FKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE 111 (264)
T ss_pred chhhhhhhhhhhccccc--cchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH
Confidence 34779999999998775 333222222111111 122289999999998
Q ss_pred ---------------eeeeccCCc---cCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 63 ---------------LQMDVRDMS---FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 63 ---------------~~~d~~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
.+.|++.-. ....+++|+|++.++|.++ +++....++.+++++|||||.+++-+|+.
T Consensus 112 ~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 112 LVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred HHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEecc-----ChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 344444221 1567899999999999999 77899999999999999999999999986
Q ss_pred chhhhhhc
Q 028050 125 PKARMIHL 132 (214)
Q Consensus 125 ~~~~~~~~ 132 (214)
.....-.+
T Consensus 187 ~DlaqlRF 194 (264)
T KOG2361|consen 187 YDLAQLRF 194 (264)
T ss_pred chHHHHhc
Confidence 55433333
No 23
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.19 E-value=8e-11 Score=94.36 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=56.4
Q ss_pred hCCCCCeEEEEcCCccc------------------------------------eeeeccCCccCCCCcceEEEeccchhh
Q 028050 46 YIPTSSRVLMVGCGNAH------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDS 89 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~ 89 (214)
.++++.+|||||||+|. .++|+.+ + +++++||+|++.++++|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~-~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-P-FKDNFFDLVLTKGVLIH 117 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-C-CCCCCEEEEEECChhhh
Confidence 46678899999999998 4456555 5 77889999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 90 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+ ++++..++++++.|++ ++.+++.++-
T Consensus 118 l-----~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 118 I-----NPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred C-----CHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 9 5568899999999998 5677776653
No 24
>PRK05785 hypothetical protein; Provisional
Probab=99.19 E-value=6.6e-11 Score=96.28 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=59.1
Q ss_pred HHHhhCCCCCeEEEEcCCccc--------------------------------eeeeccCCccCCCCcceEEEeccchhh
Q 028050 42 FVRKYIPTSSRVLMVGCGNAH--------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDS 89 (214)
Q Consensus 42 ~l~~~~~~~~~iLdiGcG~G~--------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~ 89 (214)
.+.....++.+|||||||||. .++|+++++ +++++||+|++..++++
T Consensus 44 ~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp-~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 44 TILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALP-FRDKSFDVVMSSFALHA 122 (226)
T ss_pred HHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCC-CCCCCEEEEEecChhhc
Confidence 333444567899999999997 457778888 89999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 90 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
+ .++.++++++.|+|||. +++++++.
T Consensus 123 ~-------~d~~~~l~e~~RvLkp~--~~ile~~~ 148 (226)
T PRK05785 123 S-------DNIEKVIAEFTRVSRKQ--VGFIAMGK 148 (226)
T ss_pred c-------CCHHHHHHHHHHHhcCc--eEEEEeCC
Confidence 8 89999999999999993 33444443
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.18 E-value=8.4e-11 Score=95.55 Aligned_cols=71 Identities=30% Similarity=0.489 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcCCccc------------------------------------------eeeeccCCccCCCCcceEEEec
Q 028050 47 IPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFFEDESFDAVIDK 84 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~~~~~fD~V~~~ 84 (214)
++++.+|||+|||+|. +++|+.+++ +++++||+|++.
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~ 121 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIG 121 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEe
Confidence 4578899999999997 334555555 677899999999
Q ss_pred cchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028050 85 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 125 (214)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 125 (214)
.+++++ .+..++++++.++|+|||++++.+.+.+
T Consensus 122 ~~l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 122 FGLRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cccccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 999888 7889999999999999999998876543
No 26
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.17 E-value=7.5e-11 Score=97.50 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=59.3
Q ss_pred HHHHHhh-CCCCCeEEEEcCCccc----------------------------------eeeeccCCccCCCCcceEEEec
Q 028050 40 RPFVRKY-IPTSSRVLMVGCGNAH----------------------------------LQMDVRDMSFFEDESFDAVIDK 84 (214)
Q Consensus 40 ~~~l~~~-~~~~~~iLdiGcG~G~----------------------------------~~~d~~~~~~~~~~~fD~V~~~ 84 (214)
.+++... ..++.+|||||||+|. .++|+.++. ++++||+|+++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK--PKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC--CCCCceEEEEe
Confidence 4445432 2467899999999998 455655543 45789999999
Q ss_pred cchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 85 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.+++|+ .++.++++++.++|||||++++...
T Consensus 97 ~~l~~~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 97 AALQWV-------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhhhhC-------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999 7889999999999999999988654
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.17 E-value=6.4e-11 Score=101.19 Aligned_cols=65 Identities=32% Similarity=0.484 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEEEeccch
Q 028050 49 TSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAVIDKGTL 87 (214)
Q Consensus 49 ~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l 87 (214)
++.+|||||||+|. ..+|+++++ + +++||+|++.+++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~~~FD~V~s~~vl 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-cCCcCEEEECChh
Confidence 57899999999998 122344555 4 6789999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 88 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
+|+ .++..++++++++|+|||.+++.+.
T Consensus 200 ~H~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 200 YHR-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hcc-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999 7899999999999999999988653
No 28
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.16 E-value=5.1e-11 Score=93.33 Aligned_cols=82 Identities=32% Similarity=0.546 Sum_probs=62.5
Q ss_pred HHHHhhCCCCCeEEEEcCCccc---------------------------------eeeecc-CCccCCCCcceEEEeccc
Q 028050 41 PFVRKYIPTSSRVLMVGCGNAH---------------------------------LQMDVR-DMSFFEDESFDAVIDKGT 86 (214)
Q Consensus 41 ~~l~~~~~~~~~iLdiGcG~G~---------------------------------~~~d~~-~~~~~~~~~fD~V~~~~~ 86 (214)
.++...++|+++|||+|||.|. ++.|+. .++.|++++||.|+.+.+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 3456689999999999999998 677776 345589999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE--EcCCchhhhhhc
Q 028050 87 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI--TYGDPKARMIHL 132 (214)
Q Consensus 87 l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~ 132 (214)
+.++ .++.++|+|+.|+ |...+++ -++....++..+
T Consensus 85 LQ~~-------~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 85 LQAV-------RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred HHhH-------hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHH
Confidence 9999 9999999999888 3333332 233444454444
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=5.5e-11 Score=98.69 Aligned_cols=75 Identities=24% Similarity=0.472 Sum_probs=60.6
Q ss_pred hCCCCCeEEEEcCCccc--------------------------------------eeeeccCCccCCCCcceEEEeccch
Q 028050 46 YIPTSSRVLMVGCGNAH--------------------------------------LQMDVRDMSFFEDESFDAVIDKGTL 87 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~--------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l 87 (214)
.++||++|||||||-|. +..-+.+.. ...+.||-|++.+++
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r-d~~e~fDrIvSvgmf 147 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR-DFEEPFDRIVSVGMF 147 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc-ccccccceeeehhhH
Confidence 57899999999999997 122223344 233459999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028050 88 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 126 (214)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 126 (214)
+|+ +.++...++..+.++|+|||++++.+...+.
T Consensus 148 Ehv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 148 EHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 999 7788999999999999999999998776543
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.14 E-value=1.6e-10 Score=103.58 Aligned_cols=69 Identities=26% Similarity=0.505 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcCCccc---------------------------------------eeeeccCCccCCCCcceEEEeccch
Q 028050 47 IPTSSRVLMVGCGNAH---------------------------------------LQMDVRDMSFFEDESFDAVIDKGTL 87 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~---------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l 87 (214)
+.++.+|||||||+|. .+.|+.+.+ +++++||+|++..++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l 342 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCcc
Confidence 4567899999999996 345555556 677899999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 88 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+|+ .++.+++++++++|||||++++.++.
T Consensus 343 ~h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 343 LHI-------QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred ccc-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 999 88999999999999999999998764
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.14 E-value=6.5e-11 Score=100.56 Aligned_cols=41 Identities=27% Similarity=0.227 Sum_probs=37.4
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
..+||+|+++++++|+ .++..++.+++++|||||.+++.+.
T Consensus 186 ~~~FD~V~s~gvL~H~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 LYAFDTVFSMGVLYHR-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCcCEEEEcchhhcc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 3589999999999999 8899999999999999999998654
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.14 E-value=2.6e-10 Score=90.67 Aligned_cols=92 Identities=18% Similarity=0.398 Sum_probs=62.4
Q ss_pred ChhhHHHHhhccCCcccccccccchHHHHHhhCCCCCeEEEEcCCccc--------------------------------
Q 028050 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNAH-------------------------------- 62 (214)
Q Consensus 15 ~~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~~~~~~~~iLdiGcG~G~-------------------------------- 62 (214)
..+|.+..|...... ..+...+. ..++.+|||+|||+|.
T Consensus 5 ~~~~~~~~~~~~~~~-------~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~ 75 (195)
T TIGR00477 5 KEDYFHKKYGMTTTH-------SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARE 75 (195)
T ss_pred hHHHHHHhhCCCCch-------HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 456777777654211 12333222 2345799999999998
Q ss_pred ------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 63 ------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 63 ------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
...|+...+ + +++||+|++..+++++ +..+...+++++.++|||||+++++.+
T Consensus 76 ~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 76 NLPLRTDAYDINAAA-L-NEDYDFIFSTVVFMFL-----QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCCceeEeccchhcc-c-cCCCCEEEEecccccC-----CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 122332233 3 3579999999999887 456788999999999999999766653
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.13 E-value=1.3e-10 Score=97.00 Aligned_cols=69 Identities=30% Similarity=0.518 Sum_probs=51.8
Q ss_pred hCCCCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEEEec
Q 028050 46 YIPTSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAVIDK 84 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V~~~ 84 (214)
.+++|.+|||||||-|. ...|..+++ .+||.|++.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----~~fD~IvSi 134 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----GKFDRIVSI 134 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----CCCCEEEEE
Confidence 46799999999999997 333444433 389999999
Q ss_pred cchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 85 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
++++|+ +..+...+++.+.++|||||++++-+.+
T Consensus 135 ~~~Ehv-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 135 EMFEHV-----GRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp SEGGGT-----CGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred echhhc-----ChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999999 7778999999999999999999885544
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.12 E-value=1.8e-10 Score=82.90 Aligned_cols=67 Identities=40% Similarity=0.565 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCccc------------------------------------------eeeec-cCCccCCCCcceEEEecc
Q 028050 49 TSSRVLMVGCGNAH------------------------------------------LQMDV-RDMSFFEDESFDAVIDKG 85 (214)
Q Consensus 49 ~~~~iLdiGcG~G~------------------------------------------~~~d~-~~~~~~~~~~fD~V~~~~ 85 (214)
|+.+|||||||+|. ++.|+ .... ..+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECC
Confidence 57899999999998 55666 2222 345699999999
Q ss_pred -chhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 86 -TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 86 -~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
++++++ +.++..++++.+.+.|+|||++++.+
T Consensus 79 ~~~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLL----PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ccccccc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 555441 11578999999999999999998875
No 35
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.11 E-value=2.4e-10 Score=92.68 Aligned_cols=68 Identities=35% Similarity=0.615 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCccc-------------------------------------eeeeccCCccCCCCcceEEEeccchhhhc
Q 028050 49 TSSRVLMVGCGNAH-------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLM 91 (214)
Q Consensus 49 ~~~~iLdiGcG~G~-------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~ 91 (214)
.+.+|||||||+|. +..|+.+.+ +++++||+|++..+++++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLP-LEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCC-CCCCceeEEEEhhhhhhc-
Confidence 34689999999996 334555555 677899999999999998
Q ss_pred CCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 92 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
.++.+++.++.++|+|||.+++.++..
T Consensus 112 ------~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 112 ------DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 789999999999999999999987653
No 36
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.10 E-value=5.7e-10 Score=88.17 Aligned_cols=92 Identities=22% Similarity=0.426 Sum_probs=64.4
Q ss_pred ChhhHHHHhhccCCcccccccccchHHHHHhhCCCCCeEEEEcCCccc--------------------------------
Q 028050 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNAH-------------------------------- 62 (214)
Q Consensus 15 ~~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~~~~~~~~iLdiGcG~G~-------------------------------- 62 (214)
..+||.+.|.....+ ..+...+ +.+ +..++||+|||.|+
T Consensus 5 ~~~y~~kky~~~~~h-------s~v~~a~-~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~ 75 (192)
T PF03848_consen 5 PEDYFHKKYGLTPTH-------SEVLEAV-PLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEE 75 (192)
T ss_dssp STTHHHHHHTB-----------HHHHHHC-TTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCc-------HHHHHHH-hhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhc
Confidence 457888888766433 2233222 233 46799999999998
Q ss_pred ------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 63 ------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 63 ------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.+.|+.+.. ++ +.||+|++..++.++ ..+...++++.+.+.++|||++++.++
T Consensus 76 ~l~i~~~~~Dl~~~~-~~-~~yD~I~st~v~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 76 GLDIRTRVADLNDFD-FP-EEYDFIVSTVVFMFL-----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp T-TEEEEE-BGCCBS--T-TTEEEEEEESSGGGS------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEEecchhcc-cc-CCcCEEEEEEEeccC-----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 556666665 54 689999998889888 677889999999999999999988665
No 37
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.09 E-value=2.2e-10 Score=95.53 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=59.2
Q ss_pred hCCCCCeEEEEcCCccc------------------------------------------eeeeccCCccCCCCcceEEEe
Q 028050 46 YIPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFFEDESFDAVID 83 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~~~~~fD~V~~ 83 (214)
.++++.+|||||||+|. ..+|+++++ +++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEE
Confidence 46688999999999996 235666666 67789999999
Q ss_pred ccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 84 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..++++. .+..++++++.++|||||++++.++.
T Consensus 153 ~~v~~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 153 NCVINLS-------PDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred cCcccCC-------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 9999887 67889999999999999999997653
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.09 E-value=3.1e-10 Score=93.48 Aligned_cols=73 Identities=25% Similarity=0.475 Sum_probs=57.0
Q ss_pred HHHhhCCCCCeEEEEcCCccc--------------------------------------------eeeeccCCccCCCCc
Q 028050 42 FVRKYIPTSSRVLMVGCGNAH--------------------------------------------LQMDVRDMSFFEDES 77 (214)
Q Consensus 42 ~l~~~~~~~~~iLdiGcG~G~--------------------------------------------~~~d~~~~~~~~~~~ 77 (214)
++...++++.+|||||||+|. +++|+.+++ + ..
T Consensus 49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~--~~ 125 (247)
T PRK15451 49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I--EN 125 (247)
T ss_pred HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C--CC
Confidence 334456788999999999997 223333333 2 45
Q ss_pred ceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 78 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 78 fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
+|+|++..+++++ +..+...+++++.++|||||.+++.+.
T Consensus 126 ~D~vv~~~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 126 ASMVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred CCEEehhhHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999999999988 445678999999999999999999873
No 39
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.08 E-value=1.7e-10 Score=98.82 Aligned_cols=68 Identities=25% Similarity=0.364 Sum_probs=56.6
Q ss_pred CCCCeEEEEcCCccc--------------------------------------eeeeccCCccCCCCcceEEEeccchhh
Q 028050 48 PTSSRVLMVGCGNAH--------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDS 89 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~--------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~ 89 (214)
.++.+|||||||+|. ..+|+++++ +++++||+|++..++++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP-FPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC-CCCCceeEEEEcChhhh
Confidence 467899999999997 234445555 67789999999999998
Q ss_pred hcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 90 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+ .+..++++++.++|||||+++++...
T Consensus 191 ~-------~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 191 W-------PDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred C-------CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 8 77889999999999999999886543
No 40
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.08 E-value=3.1e-10 Score=86.54 Aligned_cols=68 Identities=34% Similarity=0.695 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCccc------------------------------------------eeeeccCCcc-CCCCcceEEEec
Q 028050 48 PTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSF-FEDESFDAVIDK 84 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~-~~~~~fD~V~~~ 84 (214)
..+.+|||+|||+|. .+.|+++++. ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 357799999999998 5677777542 22 789999999
Q ss_pred cchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 85 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.+++++ .+...+++++.++|++||++++....
T Consensus 81 ~~l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999 88999999999999999999988766
No 41
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.07 E-value=2.9e-10 Score=94.82 Aligned_cols=71 Identities=32% Similarity=0.495 Sum_probs=58.3
Q ss_pred HHhhCC--CCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcce
Q 028050 43 VRKYIP--TSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFD 79 (214)
Q Consensus 43 l~~~~~--~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD 79 (214)
+..+++ .|.+|||||||+|. +-..+++++ . .++||
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp-~-~~~FD 184 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP-N-LGAFD 184 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc-c-cCCcC
Confidence 344553 57899999999998 112445666 3 67899
Q ss_pred EEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 80 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 80 ~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
+|++.++|.|. .++-..|.+++..|+|||.+++-|.
T Consensus 185 tVF~MGVLYHr-------r~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 185 TVFSMGVLYHR-------RSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred EEEEeeehhcc-------CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 99999999999 8999999999999999999998665
No 42
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.05 E-value=2.1e-10 Score=80.99 Aligned_cols=35 Identities=46% Similarity=0.720 Sum_probs=25.2
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 117 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 117 (214)
++||+|++..+++|+ +++..++++++++|||||+|
T Consensus 65 ~~fD~V~~~~vl~~l-------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL-------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS---------S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhh-------hhHHHHHHHHHHHcCCCCCC
Confidence 599999999999999 89999999999999999986
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.04 E-value=1.1e-09 Score=92.15 Aligned_cols=42 Identities=17% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+++||+|++..+++++ +.++...+++++.++|+|||+++++.
T Consensus 182 ~~~fD~I~~~~vl~~l-----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 182 QEEYDFILSTVVLMFL-----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cCCccEEEEcchhhhC-----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5789999999999888 55688999999999999999977654
No 44
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.04 E-value=4.7e-10 Score=92.73 Aligned_cols=66 Identities=20% Similarity=0.459 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcCCccc------------------------------------eeeeccCCccCCCCcceEEEeccchhhh
Q 028050 47 IPTSSRVLMVGCGNAH------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSL 90 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~ 90 (214)
+.++.+|||||||+|. ...|+.++. +..+||+|+++.+++++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ--PPQALDLIFANASLQWL 106 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC--CCCCccEEEEccChhhC
Confidence 3567899999999997 234444332 44689999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 91 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+..++++++.++|||||.+++..
T Consensus 107 -------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 107 -------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 788999999999999999998864
No 45
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.99 E-value=1.7e-09 Score=88.60 Aligned_cols=69 Identities=26% Similarity=0.415 Sum_probs=54.7
Q ss_pred hCCCCCeEEEEcCCccc--------------------------------------------eeeeccCCccCCCCcceEE
Q 028050 46 YIPTSSRVLMVGCGNAH--------------------------------------------LQMDVRDMSFFEDESFDAV 81 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~--------------------------------------------~~~d~~~~~~~~~~~fD~V 81 (214)
.++++.+|||||||+|. +++|+.+++ + ..+|+|
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~d~v 126 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-I--KNASMV 126 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C--CCCCEE
Confidence 45678899999999998 223333333 2 358999
Q ss_pred EeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 82 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
++..+++++ +..+...+++++.++|||||.+++.+.
T Consensus 127 ~~~~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eeecchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999988 445788999999999999999999864
No 46
>PRK08317 hypothetical protein; Provisional
Probab=98.97 E-value=1.6e-09 Score=87.75 Aligned_cols=69 Identities=35% Similarity=0.632 Sum_probs=57.1
Q ss_pred hCCCCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEEEec
Q 028050 46 YIPTSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAVIDK 84 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V~~~ 84 (214)
.+.++.+|||+|||+|. ...|+.+.+ +++++||+|++.
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~ 94 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FPDGSFDAVRSD 94 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CCCCCceEEEEe
Confidence 35678899999999998 123344444 567899999999
Q ss_pred cchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 85 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.+++|+ .++..+++++.++|||||.+++.+.
T Consensus 95 ~~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 95 RVLQHL-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred chhhcc-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 999999 7899999999999999999988764
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.97 E-value=9.4e-09 Score=81.25 Aligned_cols=67 Identities=31% Similarity=0.555 Sum_probs=52.7
Q ss_pred hhCCCCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEEEe
Q 028050 45 KYIPTSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAVID 83 (214)
Q Consensus 45 ~~~~~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V~~ 83 (214)
..++++.+|||||||+|. .++|+.+++ . .++||+|++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~ 118 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTS 118 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEE
Confidence 456678999999999997 444555555 3 668999998
Q ss_pred ccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 84 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
.. + .++..+++.+.++|||||++++.....
T Consensus 119 ~~----~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 119 RA----V-------ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred cc----c-------cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 64 2 456889999999999999999886543
No 48
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.96 E-value=4.4e-10 Score=79.76 Aligned_cols=47 Identities=43% Similarity=0.810 Sum_probs=39.9
Q ss_pred eeeeccCCccCCCCcceEEEecc-chhhhcCCCCChhHHHHHHHHHHHhccCCc
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKG-TLDSLMCGTNAPISASQMLGEVSRLLKPGG 115 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG 115 (214)
++.|+.+++ +.+++||+|++.+ +++|+ +.++..++++++.++|+|||
T Consensus 54 ~~~D~~~l~-~~~~~~D~v~~~~~~~~~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 54 VQADARDLP-FSDGKFDLVVCSGLSLHHL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EESCTTCHH-HHSSSEEEEEE-TTGGGGS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred EECCHhHCc-ccCCCeeEEEEcCCccCCC-----CHHHHHHHHHHHHHHhCCCC
Confidence 677777777 6778999999954 48888 67899999999999999998
No 49
>PRK06922 hypothetical protein; Provisional
Probab=98.95 E-value=2.1e-09 Score=98.11 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCccc----------------------------------------eeeeccCCcc-CCCCcceEEEeccch
Q 028050 49 TSSRVLMVGCGNAH----------------------------------------LQMDVRDMSF-FEDESFDAVIDKGTL 87 (214)
Q Consensus 49 ~~~~iLdiGcG~G~----------------------------------------~~~d~~~~~~-~~~~~fD~V~~~~~l 87 (214)
++.+|||||||+|. +++|+.+++. +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57899999999997 2245545442 567899999999999
Q ss_pred hhhcCC------CCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 88 DSLMCG------TNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 88 ~~~~~~------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
|+++.- ..+..++.++++++.++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 876421 11346889999999999999999999763
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.95 E-value=3.6e-09 Score=83.24 Aligned_cols=103 Identities=19% Similarity=0.330 Sum_probs=64.8
Q ss_pred CChhhHHHHhhccCCcccccccccc---hHHHHHhhCCCC--CeEEEEcCCccc--------------------------
Q 028050 14 GDALYWNARYVQEGGSFDWYQRYSA---LRPFVRKYIPTS--SRVLMVGCGNAH-------------------------- 62 (214)
Q Consensus 14 ~~~~yW~~~y~~~~~~~ew~~~~~~---l~~~l~~~~~~~--~~iLdiGcG~G~-------------------------- 62 (214)
++.++|+..+.+.. +|..-.+.-+ ...++...++.. .++||+|||.|.
T Consensus 4 ~~~~~l~~~la~~D-PW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar 82 (201)
T PF05401_consen 4 DNYQLLNRELANDD-PWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARAR 82 (201)
T ss_dssp SHHHHHHHHHTSSS-GGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHH
T ss_pred cHHHHHHHHhCCCC-CCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHH
Confidence 45678877777663 4432222111 122333234433 589999999998
Q ss_pred -----------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 63 -----------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 63 -----------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.+.|+.+. .+.++||+|+++.+++++ ++.+++..++..+.+.|+|||.+++.+..
T Consensus 83 ~Rl~~~~~V~~~~~dvp~~--~P~~~FDLIV~SEVlYYL----~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 83 ERLAGLPHVEWIQADVPEF--WPEGRFDLIVLSEVLYYL----DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HhcCCCCCeEEEECcCCCC--CCCCCeeEEEEehHhHcC----CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 34444433 478899999999999998 23467899999999999999999997754
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.94 E-value=5.3e-09 Score=87.02 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=41.2
Q ss_pred eccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 66 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 66 d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
|+.+.+ ++.++||+|+|.++++|+ +.++..+++++++++|+|||++++..
T Consensus 193 dl~~~~-~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 193 NLLAES-PPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred cCCCCC-CccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344444 457789999999999998 55678899999999999999998754
No 52
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.91 E-value=2.2e-09 Score=86.78 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=37.4
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.++||+|++..+++|+ .+...+++++.++|||||++++.+.
T Consensus 65 ~~~fD~I~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 65 PDTYDLVFGFEVIHHI-------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCCCCEeehHHHHHhC-------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 3589999999999999 7889999999999999999998765
No 53
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.90 E-value=4.8e-09 Score=84.25 Aligned_cols=69 Identities=35% Similarity=0.595 Sum_probs=56.0
Q ss_pred CCCCeEEEEcCCccc----------------------------------------eeeeccCCccCCCCcceEEEeccch
Q 028050 48 PTSSRVLMVGCGNAH----------------------------------------LQMDVRDMSFFEDESFDAVIDKGTL 87 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~----------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l 87 (214)
.++.+|||+|||+|. ...|+.+.+ +..++||+|++...+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeee
Confidence 367899999999997 123333444 456789999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 88 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
+++ .++..+++++.+.|+|||++++.+...
T Consensus 117 ~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 117 RNV-------TDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred CCc-------ccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 888 788999999999999999999887653
No 54
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.90 E-value=3e-09 Score=88.84 Aligned_cols=68 Identities=28% Similarity=0.529 Sum_probs=51.0
Q ss_pred HHHhhCC-CCCeEEEEcCCccc---------------------------------------eeeeccCCccCCCCcceEE
Q 028050 42 FVRKYIP-TSSRVLMVGCGNAH---------------------------------------LQMDVRDMSFFEDESFDAV 81 (214)
Q Consensus 42 ~l~~~~~-~~~~iLdiGcG~G~---------------------------------------~~~d~~~~~~~~~~~fD~V 81 (214)
.+...++ +..+|||+|||+|. .++|+.+++ +++++||+|
T Consensus 77 ~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp-~~~~sfD~I 155 (272)
T PRK11088 77 LLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP-FADQSLDAI 155 (272)
T ss_pred HHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-CcCCceeEE
Confidence 3444443 44689999999997 456667777 888999999
Q ss_pred EeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 82 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
++... ...++++.|+|||||++++++.+.
T Consensus 156 ~~~~~--------------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 156 IRIYA--------------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEecC--------------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 97532 123578999999999999987654
No 55
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.89 E-value=7.6e-09 Score=82.15 Aligned_cols=78 Identities=29% Similarity=0.511 Sum_probs=63.7
Q ss_pred chHHHHHhhCCCCCe-EEEEcCCccc------------------------------------------eeeeccCCc-cC
Q 028050 38 ALRPFVRKYIPTSSR-VLMVGCGNAH------------------------------------------LQMDVRDMS-FF 73 (214)
Q Consensus 38 ~l~~~l~~~~~~~~~-iLdiGcG~G~------------------------------------------~~~d~~~~~-~~ 73 (214)
.+.+.|.+.+++... |||||||||. +..|+++.+ ..
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 466778888887776 9999999998 566666542 02
Q ss_pred ------CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 74 ------EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 74 ------~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
..++||+|++.+++|-+ +++....+++.+.++|++||.|++-
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccccccCCCCcceeeehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 24589999999999766 8899999999999999999999873
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.87 E-value=9.7e-09 Score=80.79 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=46.0
Q ss_pred CCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEEEeccchh
Q 028050 50 SSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLD 88 (214)
Q Consensus 50 ~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~ 88 (214)
+.+|||+|||+|. +++|+.++. ..++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-h-
Confidence 7899999999997 334444443 356899999865 3
Q ss_pred hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 89 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.+...+++.+.++|+|||++++...
T Consensus 119 ---------~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---------ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---------hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3456788889999999999987753
No 57
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.86 E-value=9.3e-09 Score=83.41 Aligned_cols=45 Identities=36% Similarity=0.571 Sum_probs=39.3
Q ss_pred CCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 73 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
+..++||+|++..+++++ .++..+++++.++|+|||.++++++..
T Consensus 117 ~~~~~~D~I~~~~~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNV-------PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCCCCccEEEEecccccC-------CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 456789999999999888 788999999999999999998877653
No 58
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.86 E-value=2.1e-08 Score=79.55 Aligned_cols=68 Identities=31% Similarity=0.489 Sum_probs=48.1
Q ss_pred CCCCCeEEEEcCCccc-----------------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHH
Q 028050 47 IPTSSRVLMVGCGNAH-----------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQM 103 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~-----------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~ 103 (214)
.+++..|.|+|||.+. ..+|+.+.| +++++.|+++.+-.|.. .+...+
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vP-L~~~svDv~VfcLSLMG--------Tn~~~f 140 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVP-LEDESVDVAVFCLSLMG--------TNWPDF 140 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S---TT-EEEEEEES---S--------S-HHHH
T ss_pred cCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCc-CCCCceeEEEEEhhhhC--------CCcHHH
Confidence 3456799999999997 678889999 99999999998766643 488999
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 028050 104 LGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 104 l~~~~~~LkpgG~l~~~~~~ 123 (214)
+.|+.|+|||||.|.|++..
T Consensus 141 i~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 141 IREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp HHHHHHHEEEEEEEEEEEEG
T ss_pred HHHHHheeccCcEEEEEEec
Confidence 99999999999999998764
No 59
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.85 E-value=9.7e-09 Score=89.77 Aligned_cols=71 Identities=28% Similarity=0.596 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCCccc----------------------------------eeeeccCCccCCCCcceEEEeccchhhhcC
Q 028050 47 IPTSSRVLMVGCGNAH----------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMC 92 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~----------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~ 92 (214)
++++.+|||||||+|. +.....+.... +++||+|++..+++|+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~Ivs~~~~ehv-- 241 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRIVSVGMFEHV-- 241 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEEEEeCchhhC--
Confidence 5688999999999998 00001111111 4689999999999998
Q ss_pred CCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 93 GTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+..+...+++++.++|||||++++.+++
T Consensus 242 ---g~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 242 ---GPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred ---ChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 5567789999999999999999997764
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.82 E-value=1.1e-08 Score=91.82 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCccc-------------------------------------eeeecc--CCccCCCCcceEEEeccchhh
Q 028050 49 TSSRVLMVGCGNAH-------------------------------------LQMDVR--DMSFFEDESFDAVIDKGTLDS 89 (214)
Q Consensus 49 ~~~~iLdiGcG~G~-------------------------------------~~~d~~--~~~~~~~~~fD~V~~~~~l~~ 89 (214)
++.+|||||||+|. ++.|+. .++ +++++||+|++..+++|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCCCCEEEEehhhhHHh
Confidence 46799999999997 334554 244 67789999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 90 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
+ +..+..++++++.++|||||++++.+.
T Consensus 116 l-----~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 116 L-----SDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred C-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8 444578999999999999999988764
No 61
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.80 E-value=1e-08 Score=83.46 Aligned_cols=43 Identities=23% Similarity=0.450 Sum_probs=38.2
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..++||+|++..+++++ .++..+++.+.++|+|||.+++....
T Consensus 111 ~~~~fD~Ii~~~~l~~~-------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHV-------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cCCCccEEEEhhHhhcc-------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 45789999999999988 78889999999999999999887654
No 62
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.79 E-value=1.7e-08 Score=82.16 Aligned_cols=68 Identities=29% Similarity=0.536 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcCCccc---------------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHH
Q 028050 47 IPTSSRVLMVGCGNAH---------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLG 105 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~---------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~ 105 (214)
.+....|.|+|||.+. ..+|+.++| .++++.|+++.+-+|.. .+...++.
T Consensus 178 r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vP-l~d~svDvaV~CLSLMg--------tn~~df~k 248 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRNVP-LEDESVDVAVFCLSLMG--------TNLADFIK 248 (325)
T ss_pred CcCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccCCc-CccCcccEEEeeHhhhc--------ccHHHHHH
Confidence 3456799999999987 778999999 99999999987655532 58999999
Q ss_pred HHHHhccCCcEEEEEEcC
Q 028050 106 EVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 106 ~~~~~LkpgG~l~~~~~~ 123 (214)
++.|+|++||.+.|.+..
T Consensus 249 Ea~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 249 EANRILKPGGLLYIAEVK 266 (325)
T ss_pred HHHHHhccCceEEEEehh
Confidence 999999999999998754
No 63
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.78 E-value=5.2e-08 Score=76.80 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.1
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.++||+|++..... ....+++.+.++|+|||++++..
T Consensus 95 ~~~~D~v~~~~~~~----------~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 95 PGKADAIFIGGSGG----------NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CcCCCEEEECCCcc----------CHHHHHHHHHHhcCCCeEEEEEE
Confidence 35799999876543 34678999999999999998754
No 64
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.75 E-value=2.1e-08 Score=80.60 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=51.8
Q ss_pred CCCCCeEEEEcCCccc-------------------------------eeeeccCCc-------cCCCCcceEEEeccchh
Q 028050 47 IPTSSRVLMVGCGNAH-------------------------------LQMDVRDMS-------FFEDESFDAVIDKGTLD 88 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~-------------------------------~~~d~~~~~-------~~~~~~fD~V~~~~~l~ 88 (214)
++++.+|||||||+|. +++|+++.+ .+.+++||+|++..+.+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~ 128 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN 128 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence 5788899999999998 223333321 14467899999976553
Q ss_pred hhcCCCCChhH-------HHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 89 SLMCGTNAPIS-------ASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 89 ~~~~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
.. + .+..+ ...+++++.++|||||.+++..+..
T Consensus 129 ~~--g-~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 129 MS--G-TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred cC--C-ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 32 1 01011 2578999999999999999977654
No 65
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.74 E-value=2.9e-08 Score=84.21 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCCCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEEEecc
Q 028050 47 IPTSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAVIDKG 85 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V~~~~ 85 (214)
+.++.+|||||||+|. +.+|+.+.+ ++ .+|+|+++.
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~--~~D~v~~~~ 223 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP--EADAVLFCR 223 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-CC--CCCEEEeEh
Confidence 4567799999999998 333443333 33 379999999
Q ss_pred chhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 86 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
++|+. +.+...+++++++++|+|||++++.++
T Consensus 224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 88877 445567899999999999999999875
No 66
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.73 E-value=2.7e-08 Score=78.93 Aligned_cols=64 Identities=36% Similarity=0.595 Sum_probs=50.3
Q ss_pred HHhhCCCCCeEEEEcCCccc---------------------------------eeeeccC-CccCCCCcceEEEeccchh
Q 028050 43 VRKYIPTSSRVLMVGCGNAH---------------------------------LQMDVRD-MSFFEDESFDAVIDKGTLD 88 (214)
Q Consensus 43 l~~~~~~~~~iLdiGcG~G~---------------------------------~~~d~~~-~~~~~~~~fD~V~~~~~l~ 88 (214)
+.+.++++.+|||||||+|. ++.|+.+ ++.+++++||+|++..+++
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 33467788899999999997 3455543 3225677899999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHhccC
Q 028050 89 SLMCGTNAPISASQMLGEVSRLLKP 113 (214)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~Lkp 113 (214)
|+ .++.++++++.|++++
T Consensus 87 ~~-------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 AT-------RNPEEILDEMLRVGRH 104 (194)
T ss_pred cC-------cCHHHHHHHHHHhCCe
Confidence 99 8899999999888664
No 67
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.70 E-value=6e-08 Score=70.56 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=30.3
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
..+||+|++.... ....++++++.++|||||.+++..+
T Consensus 86 ~~~~D~v~~~~~~----------~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSG----------GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcc----------hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 3589999986644 3446899999999999999987653
No 68
>PRK06202 hypothetical protein; Provisional
Probab=98.70 E-value=5e-08 Score=79.46 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=39.0
Q ss_pred eccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028050 66 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 125 (214)
Q Consensus 66 d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 125 (214)
+...++ .++++||+|+++.+++|+ +..+..++++++.|+++ |.+++.++..+
T Consensus 119 ~~~~l~-~~~~~fD~V~~~~~lhh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 119 VSDELV-AEGERFDVVTSNHFLHHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred eccccc-ccCCCccEEEECCeeecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 344455 466799999999999999 33446789999999998 56666666543
No 69
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.67 E-value=5.9e-08 Score=79.54 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=32.6
Q ss_pred CCCCcceEEEeccchhh------h-------------cCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 73 FEDESFDAVIDKGTLDS------L-------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~------~-------------~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
++.++||+|+++..+.. + +.+..+......+++++.++|+|||.+++..
T Consensus 150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 45678999998644321 1 1111222345688999999999999998754
No 70
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.67 E-value=1.6e-07 Score=73.38 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=32.4
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC--Cchhhhhhcc
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG--DPKARMIHLK 133 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~ 133 (214)
+||.|+..+. .....+++.+...|||||++++.... .....+..+.
T Consensus 102 ~~daiFIGGg-----------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~ 149 (187)
T COG2242 102 SPDAIFIGGG-----------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALE 149 (187)
T ss_pred CCCEEEECCC-----------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence 5777776554 46789999999999999999885433 3333344443
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.65 E-value=1.8e-07 Score=74.48 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=28.2
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+.||+|++.... .++..+++.+.++|||||++++..
T Consensus 110 ~~~D~V~~~~~~----------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 110 EKFDRIFIGGGS----------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCCCEEEECCCc----------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 578988875321 466889999999999999998643
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.65 E-value=1.3e-07 Score=79.67 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=50.9
Q ss_pred HHHhhCCCCCeEEEEcCCccc-------------eeee------------------------c-cCCccCCCCcceEEEe
Q 028050 42 FVRKYIPTSSRVLMVGCGNAH-------------LQMD------------------------V-RDMSFFEDESFDAVID 83 (214)
Q Consensus 42 ~l~~~~~~~~~iLdiGcG~G~-------------~~~d------------------------~-~~~~~~~~~~fD~V~~ 83 (214)
++.....++.+|||+|||+|. ...| . .+.....+++||+|++
T Consensus 152 ~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVva 231 (288)
T TIGR00406 152 WLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVA 231 (288)
T ss_pred HHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEE
Confidence 344556678999999999997 0000 0 0011134568999999
Q ss_pred ccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 84 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+... .....++.++.++|||||+++++...
T Consensus 232 n~~~----------~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILA----------EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCH----------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 7654 34568999999999999999987754
No 73
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.65 E-value=9.2e-08 Score=74.39 Aligned_cols=49 Identities=22% Similarity=0.438 Sum_probs=33.4
Q ss_pred CCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 73 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.++++||+|+++.-++.- ...+..-..++++.+.++|||||.++++...
T Consensus 94 ~~~~~fD~Iv~NPP~~~~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 94 LPDGKFDLIVSNPPFHAG--GDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp CCTTCEEEEEE---SBTT--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ccccceeEEEEccchhcc--cccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 356899999999875422 0112245789999999999999999776543
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.64 E-value=9.2e-08 Score=76.64 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=44.3
Q ss_pred CCCCCeEEEEcCCccc-------------------------------------------eeeeccCCccCCCCcceEEEe
Q 028050 47 IPTSSRVLMVGCGNAH-------------------------------------------LQMDVRDMSFFEDESFDAVID 83 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~-------------------------------------------~~~d~~~~~~~~~~~fD~V~~ 83 (214)
+.++.+|||||||+|. ..+|..+.. ....+||+|++
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~ 148 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-EKHAPFDAIIV 148 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-ccCCCccEEEE
Confidence 3577899999999997 223333322 23468999999
Q ss_pred ccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 84 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..++.++ . .++.++|+|||++++..
T Consensus 149 ~~~~~~~-------~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAASTI-------P------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCcchh-------h------HHHHHhcCcCcEEEEEE
Confidence 8877655 2 46889999999997754
No 75
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.62 E-value=7.8e-08 Score=74.09 Aligned_cols=56 Identities=27% Similarity=0.477 Sum_probs=51.2
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 126 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 126 (214)
+++|+.+++ +++++||+|++..+++++ .++.+++++++|+|||||.+++.+++.+.
T Consensus 31 ~~~d~~~lp-~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 31 IEGDAIDLP-FDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred EEechhhCC-CCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 778999998 889999999999999998 89999999999999999999999887543
No 76
>PLN03075 nicotianamine synthase; Provisional
Probab=98.62 E-value=7.1e-08 Score=81.01 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+.||+|++. +++++ +.++..+++++++++|+|||.+++-+
T Consensus 193 l~~FDlVF~~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 193 LKEYDVVFLA-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCCcCEEEEe-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 3689999999 77776 45689999999999999999998876
No 77
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.61 E-value=1.9e-07 Score=81.81 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=70.4
Q ss_pred CChhhHHHHhhccCCcccccccccchHHHHHhhCCCCCeEEEEcCCccc-------------------------------
Q 028050 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNAH------------------------------- 62 (214)
Q Consensus 14 ~~~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~~~~~~~~iLdiGcG~G~------------------------------- 62 (214)
|..+||...|....+.+.-......+.+.+...++++.+|||+|||+|.
T Consensus 216 G~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 216 GVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred eeeeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 4455666666555444322222223344433455667799999999997
Q ss_pred ---------eeeeccCCccC-CCCcceEEEeccchh------------------hhcCCCCChhHHHHHHHHHHHhccCC
Q 028050 63 ---------LQMDVRDMSFF-EDESFDAVIDKGTLD------------------SLMCGTNAPISASQMLGEVSRLLKPG 114 (214)
Q Consensus 63 ---------~~~d~~~~~~~-~~~~fD~V~~~~~l~------------------~~~~~~~~~~~~~~~l~~~~~~Lkpg 114 (214)
.++|+.+.. + ..++||+|+++..+. +++.+..+.....++++.+.++|+||
T Consensus 296 ~~~g~rV~fi~gDl~e~~-l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 296 ADLGARVEFAHGSWFDTD-MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred HHcCCcEEEEEcchhccc-cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 334443322 2 235799999976431 23334455566789999999999999
Q ss_pred cEEEEEE-cCCchhhhhhc
Q 028050 115 GIYMLIT-YGDPKARMIHL 132 (214)
Q Consensus 115 G~l~~~~-~~~~~~~~~~~ 132 (214)
|.+++.. +.+.......+
T Consensus 375 G~lilEiG~~Q~e~V~~ll 393 (423)
T PRK14966 375 GFLLLEHGFDQGAAVRGVL 393 (423)
T ss_pred cEEEEEECccHHHHHHHHH
Confidence 9987633 33334334444
No 78
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.59 E-value=3.3e-07 Score=73.15 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=69.8
Q ss_pred hhhHHHHhhccCCcccccccccchHHHHHhhCCC--CCeEEEEcCCccc-------------------------------
Q 028050 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPT--SSRVLMVGCGNAH------------------------------- 62 (214)
Q Consensus 16 ~~yW~~~y~~~~~~~ew~~~~~~l~~~l~~~~~~--~~~iLdiGcG~G~------------------------------- 62 (214)
.+-|...|.++..-.. ++..-..+.+....++. ..-|||||||+|.
T Consensus 16 nd~eA~kYt~nsri~~-IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e 94 (270)
T KOG1541|consen 16 NDTEAPKYTQNSRIVL-IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE 94 (270)
T ss_pred chhhhhhccccceeee-ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh
Confidence 4456667777653322 22211111121223444 6689999999997
Q ss_pred ---eeeec-cCCccCCCCcceEEEeccchhhhcCCC----CChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 63 ---LQMDV-RDMSFFEDESFDAVIDKGTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 63 ---~~~d~-~~~~~~~~~~fD~V~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
+.+|+ +-+| |..++||.||+...+..+.... .+...+..++..++.+|++|++.++--+-.
T Consensus 95 gdlil~DMG~Glp-frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 95 GDLILCDMGEGLP-FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred cCeeeeecCCCCC-CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 33343 3467 9999999999988886554333 344455678999999999999998876653
No 79
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=9e-08 Score=79.01 Aligned_cols=81 Identities=32% Similarity=0.557 Sum_probs=66.4
Q ss_pred cchHHHHHhhCCCCCeEEEEcCCccc-------------------------------eeeeccCCccCCCCcceEEEecc
Q 028050 37 SALRPFVRKYIPTSSRVLMVGCGNAH-------------------------------LQMDVRDMSFFEDESFDAVIDKG 85 (214)
Q Consensus 37 ~~l~~~l~~~~~~~~~iLdiGcG~G~-------------------------------~~~d~~~~~~~~~~~fD~V~~~~ 85 (214)
+....++. ..+.+..++|+|||+|. ..+|+.++| +.+.+||.++...
T Consensus 34 p~v~qfl~-~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p-~~~~s~d~~lsia 111 (293)
T KOG1331|consen 34 PMVRQFLD-SQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLP-FREESFDAALSIA 111 (293)
T ss_pred HHHHHHHh-ccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCC-CCCCccccchhhh
Confidence 34445555 45568999999999997 456777888 8999999999999
Q ss_pred chhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 86 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
++||+++. ....++++++.|+|+|||..++..++
T Consensus 112 vihhlsT~----~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 112 VIHHLSTR----ERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhH----HHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 99999544 78899999999999999997775543
No 80
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.59 E-value=6.5e-08 Score=76.92 Aligned_cols=73 Identities=23% Similarity=0.469 Sum_probs=60.4
Q ss_pred hHHHHHhhCC--CCCeEEEEcCCccc------------------------------------eeeeccCCccCCCCcceE
Q 028050 39 LRPFVRKYIP--TSSRVLMVGCGNAH------------------------------------LQMDVRDMSFFEDESFDA 80 (214)
Q Consensus 39 l~~~l~~~~~--~~~~iLdiGcG~G~------------------------------------~~~d~~~~~~~~~~~fD~ 80 (214)
..+++. +++ +..+|.|+|||+|. ..+|+.+.. ++..+|+
T Consensus 19 a~dLla-~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~--p~~~~dl 95 (257)
T COG4106 19 ARDLLA-RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK--PEQPTDL 95 (257)
T ss_pred HHHHHh-hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC--CCCccch
Confidence 455665 443 56699999999998 456666665 6778999
Q ss_pred EEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 81 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 81 V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
++++.+|+.+ .+..+.+..+...|.|||.|.+-.
T Consensus 96 lfaNAvlqWl-------pdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 96 LFANAVLQWL-------PDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhhhhhhhhc-------cccHHHHHHHHHhhCCCceEEEEC
Confidence 9999999999 899999999999999999998753
No 81
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.58 E-value=3e-07 Score=71.95 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=39.5
Q ss_pred CCcceEEEeccchhhhcC--------------CCCChhHHHHHHHHHHHhccCCcEEEEEEcCC--chhhhhhccc
Q 028050 75 DESFDAVIDKGTLDSLMC--------------GTNAPISASQMLGEVSRLLKPGGIYMLITYGD--PKARMIHLKW 134 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~--------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~ 134 (214)
.++||+|+++..+++.-. +..+.....++++++.++|||||.++++.... .......+..
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence 458999999877654411 01112236789999999999999998876543 3333444433
No 82
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.58 E-value=1.1e-07 Score=76.82 Aligned_cols=41 Identities=32% Similarity=0.530 Sum_probs=37.4
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
++||+|++.++++++ .++..+++++.++|+|||.+++.+.+
T Consensus 111 ~~~D~i~~~~~l~~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 111 KSFDVVTCMEVLEHV-------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCccEEEehhHHHhC-------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 689999999999999 78899999999999999999887654
No 83
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.57 E-value=1.7e-07 Score=77.96 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=33.4
Q ss_pred CCcceEEEeccchh-------------------hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLD-------------------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~-------------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.++||+|+++..+. +++.|..+.....++++++.++|+|||++++..
T Consensus 173 ~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 46899999853321 222333445667889999999999999998743
No 84
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.56 E-value=1.3e-07 Score=81.01 Aligned_cols=46 Identities=35% Similarity=0.395 Sum_probs=37.2
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
..||+|-|..++|+.|.. .+....+|.++.+.|+|||+++.++...
T Consensus 144 ~~FDvVScQFalHY~Fes---e~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFES---EEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp S-EEEEEEES-GGGGGSS---HHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred CCcceeehHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 499999999999988754 4677889999999999999998887653
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.54 E-value=2.3e-07 Score=76.60 Aligned_cols=71 Identities=25% Similarity=0.410 Sum_probs=49.1
Q ss_pred HHHhhCCCCCeEEEEcCCccc-------------eeeecc------------------CCccCCC--CcceEEEeccchh
Q 028050 42 FVRKYIPTSSRVLMVGCGNAH-------------LQMDVR------------------DMSFFED--ESFDAVIDKGTLD 88 (214)
Q Consensus 42 ~l~~~~~~~~~iLdiGcG~G~-------------~~~d~~------------------~~~~~~~--~~fD~V~~~~~l~ 88 (214)
.+.....++.+|||+|||+|. ...|+. ... +.. .+||+|+++...
T Consensus 112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~-~~~~~~~fD~Vvani~~- 189 (250)
T PRK00517 112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVY-LPQGDLKADVIVANILA- 189 (250)
T ss_pred HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEE-EccCCCCcCEEEEcCcH-
Confidence 444456688999999999997 111110 011 122 279999987433
Q ss_pred hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 89 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.....++.++.++|||||++++....
T Consensus 190 ---------~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 190 ---------NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred ---------HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 34578899999999999999998654
No 86
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.54 E-value=1.2e-07 Score=75.92 Aligned_cols=75 Identities=23% Similarity=0.173 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCccc-----------------------------------------eeeec-cCCcc-CCCCcceEEEecc
Q 028050 49 TSSRVLMVGCGNAH-----------------------------------------LQMDV-RDMSF-FEDESFDAVIDKG 85 (214)
Q Consensus 49 ~~~~iLdiGcG~G~-----------------------------------------~~~d~-~~~~~-~~~~~fD~V~~~~ 85 (214)
++.+|||+|||+|. +++|+ ..++. +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 57799999999997 34454 33321 4567899999864
Q ss_pred chhhhcC-CCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 86 TLDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 86 ~l~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
....... ..........+++++.++|||||.+++.+..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3211100 0001112578999999999999999887643
No 87
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.51 E-value=4.4e-07 Score=78.23 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=36.7
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.++||+|+++..+|... ........++++++.++|||||.++++...
T Consensus 259 ~~~fDlIvsNPPFH~g~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 259 KGRFDMIISNPPFHDGI--QTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CCCccEEEECCCccCCc--cccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 56899999998886421 112356789999999999999999887643
No 88
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.50 E-value=5e-07 Score=71.29 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=49.1
Q ss_pred hCCCCCeEEEEcCCccc-------------------------------eeeeccCCc-------cCCCCcceEEEeccch
Q 028050 46 YIPTSSRVLMVGCGNAH-------------------------------LQMDVRDMS-------FFEDESFDAVIDKGTL 87 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~-------------------------------~~~d~~~~~-------~~~~~~fD~V~~~~~l 87 (214)
.++++.+|||+|||+|. .+.|+.+.. .++.++||+|++....
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCC
Confidence 35788999999999997 112332211 0235679999986432
Q ss_pred h--------hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 88 D--------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 88 ~--------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+ +. ...+...+++.++.++|+|||++++..+.
T Consensus 109 ~~~g~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 109 NISGYWDIDHL----RSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCccccHH----HHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 1 11 00123578999999999999999886544
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.50 E-value=2.8e-07 Score=77.64 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=51.8
Q ss_pred HHHHHhhCCCCCeEEEEcCCccc------------------------------------eeeeccCCccCCCCcceEEEe
Q 028050 40 RPFVRKYIPTSSRVLMVGCGNAH------------------------------------LQMDVRDMSFFEDESFDAVID 83 (214)
Q Consensus 40 ~~~l~~~~~~~~~iLdiGcG~G~------------------------------------~~~d~~~~~~~~~~~fD~V~~ 83 (214)
..++.+...++.+|||+|||+|. ....+..........||+|++
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvA 231 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVA 231 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEE
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEE
Confidence 35677788889999999999998 111111111134589999999
Q ss_pred ccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 84 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+=.. .-+..++..+.++|+|||+++++..-
T Consensus 232 NI~~----------~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 232 NILA----------DVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp ES-H----------HHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred CCCH----------HHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 8554 34578889999999999999997654
No 90
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.50 E-value=3.8e-07 Score=73.58 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=32.9
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
++||+|++..+++|+ +..+..+++.++.+++++++.+.+.
T Consensus 118 ~~fD~ii~~~~l~~~-----~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 GEFDIVVCMDVLIHY-----PASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CCcCEEEEhhHHHhC-----CHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 789999999999887 5567889999999999877666543
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.49 E-value=4.4e-07 Score=78.99 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=34.8
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+..+||+|+++..++.... .......+++..+.++|+|||.++++.
T Consensus 295 ~~~~fDlIlsNPPfh~~~~--~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCcc--CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3458999999987764310 122356789999999999999998885
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.47 E-value=8.1e-07 Score=71.36 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=26.4
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.++||+|++...+.++ .+.+.+.|+|||++++...
T Consensus 142 ~~~fD~I~~~~~~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 3689999987655433 3457899999999988654
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.47 E-value=3.7e-07 Score=73.55 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=44.0
Q ss_pred hCCCCCeEEEEcCCccc------------------------------------------eeeeccCCccCCCCcceEEEe
Q 028050 46 YIPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFFEDESFDAVID 83 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~~~~~fD~V~~ 83 (214)
.+.++.+|||||||+|. +++|..... ...+.||+|++
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~fD~I~~ 151 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPYDRIYV 151 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCcCEEEE
Confidence 35688999999999998 333433332 34578999998
Q ss_pred ccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 84 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
......+ ...+.+.|||||++++..
T Consensus 152 ~~~~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 152 TAAGPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcccc-------------hHHHHHhhCCCcEEEEEE
Confidence 7655433 245777999999987753
No 94
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=4e-07 Score=76.40 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=53.1
Q ss_pred HHHHHhhCCCCCeEEEEcCCccc----------------------------------ee----eeccCCccC-CCCcceE
Q 028050 40 RPFVRKYIPTSSRVLMVGCGNAH----------------------------------LQ----MDVRDMSFF-EDESFDA 80 (214)
Q Consensus 40 ~~~l~~~~~~~~~iLdiGcG~G~----------------------------------~~----~d~~~~~~~-~~~~fD~ 80 (214)
..++++...++.+|||+|||+|. +. ......... ..+.||+
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~Dv 232 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDV 232 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccE
Confidence 35677788899999999999998 11 000111112 2369999
Q ss_pred EEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 81 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 81 V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
|+++=.- .-...+...+.+.|||||+++++..-
T Consensus 233 IVANILA----------~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 233 IVANILA----------EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred EEehhhH----------HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 9998532 23578999999999999999998754
No 95
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.46 E-value=1.1e-06 Score=73.96 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=34.3
Q ss_pred CCCcceEEEeccch------------------hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 74 EDESFDAVIDKGTL------------------DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 74 ~~~~fD~V~~~~~l------------------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+..+||+|+++.-+ .+++.|.++......++.++.++|+|||++++..
T Consensus 179 ~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 179 AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 34479999986211 1233344556678999999999999999997744
No 96
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.45 E-value=5.8e-07 Score=72.72 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEE
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 117 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 117 (214)
.+++||+|++..+++|+ +..+...+++++.+.+++++++
T Consensus 124 ~~~~fD~v~~~~~l~~~-----~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHY-----PQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred ccCCcCEEEEcchhhcC-----CHHHHHHHHHHHHhhcCCeEEE
Confidence 45789999999999887 4467788999999877554443
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.43 E-value=1e-06 Score=74.16 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=33.5
Q ss_pred CCCCcceEEEeccch------------------hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 73 FEDESFDAVIDKGTL------------------DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l------------------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+++++||+|+++.-+ ..++.|..+......++.++.++|+|||++++..
T Consensus 185 ~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 185 LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 345589999986321 0122233444567889999999999999997644
No 98
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.43 E-value=6.8e-07 Score=72.23 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=36.1
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCc-EEEEEEcC
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG-IYMLITYG 123 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~ 123 (214)
.+++.|+|++..++|.+ +..++.+++.|+||++| .+.+..++
T Consensus 97 ~e~SVDlI~~Aqa~HWF--------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF--------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred CCcceeeehhhhhHHhh--------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 37899999999999887 88999999999998766 77776665
No 99
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.43 E-value=2.5e-07 Score=73.47 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCccc-----------------------------------------eeeeccCCcc--CCCCcceEEEecc
Q 028050 49 TSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSF--FEDESFDAVIDKG 85 (214)
Q Consensus 49 ~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~--~~~~~fD~V~~~~ 85 (214)
...+|||||||+|. +++|+.++.. ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45699999999998 3445543321 3456899998764
Q ss_pred chhhhcCCCC---ChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 86 TLDSLMCGTN---APISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 86 ~l~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
...+. ... ..-....+++++.++|||||.+++.+-.
T Consensus 96 pdpw~--k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWP--KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCC--CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 32111 000 0001257999999999999999887744
No 100
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.42 E-value=8.2e-07 Score=75.28 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=49.7
Q ss_pred HhhCCCCCeEEEEcCCccc-------------------------------------------eeeeccCCccCCCC----
Q 028050 44 RKYIPTSSRVLMVGCGNAH-------------------------------------------LQMDVRDMSFFEDE---- 76 (214)
Q Consensus 44 ~~~~~~~~~iLdiGcG~G~-------------------------------------------~~~d~~~~~~~~~~---- 76 (214)
...++++.+|||+|||+|. +++|+.+...++..
T Consensus 58 a~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 58 AAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred HHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccC
Confidence 3456677899999999997 34555542112222
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
...++++..++.++ +.++..+++++++++|+|||.+++..
T Consensus 138 ~~~~~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 138 RRLGFFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred CeEEEEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 12233344455555 56788999999999999999998744
No 101
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.42 E-value=1.9e-07 Score=74.88 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=57.6
Q ss_pred cchHHHHHhh-CCCCCeEEEEcCCccc----------------------------------eeeeccCCc-cCCCCcceE
Q 028050 37 SALRPFVRKY-IPTSSRVLMVGCGNAH----------------------------------LQMDVRDMS-FFEDESFDA 80 (214)
Q Consensus 37 ~~l~~~l~~~-~~~~~~iLdiGcG~G~----------------------------------~~~d~~~~~-~~~~~~fD~ 80 (214)
..+..++.+. ..+-.++||+|||||. .++++..+. ...++.||+
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 3344555432 2234599999999998 333333221 135678999
Q ss_pred EEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 81 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 81 V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
|.+..++-++ -+...++.-+...|+|||.+.++.-
T Consensus 192 i~AaDVl~Yl-------G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 192 IVAADVLPYL-------GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred hhhhhHHHhh-------cchhhHHHHHHHhcCCCceEEEEec
Confidence 9999999988 7889999999999999999988753
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.41 E-value=2.7e-07 Score=66.71 Aligned_cols=59 Identities=29% Similarity=0.441 Sum_probs=37.4
Q ss_pred eeeeccCCc-cCCCCcceEEEeccchhhhcC-CCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 63 LQMDVRDMS-FFEDESFDAVIDKGTLDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 63 ~~~d~~~~~-~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+.|+.+.. .+.+++||+|+++..+..... ..........+++++.++|||||.+++++
T Consensus 55 ~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 55 IVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp EESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 445554443 256789999999887653210 11122356789999999999999998875
No 103
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.40 E-value=8.3e-07 Score=71.54 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=42.7
Q ss_pred CCCCCeEEEEcCCccc------------------------------------------eeeeccCCccCCCCcceEEEec
Q 028050 47 IPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFFEDESFDAVIDK 84 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~~~~~fD~V~~~ 84 (214)
+.++.+|||||||+|. ++.|..+.. .....||+|++.
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Ii~~ 153 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAPYDRIYVT 153 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCCCCEEEEc
Confidence 4678899999999998 223333322 234579999987
Q ss_pred cchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 85 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
....++ ...+.+.|+|||++++..
T Consensus 154 ~~~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccc-------------cHHHHHhcCcCcEEEEEE
Confidence 654333 345788999999998764
No 104
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.39 E-value=8.9e-07 Score=61.02 Aligned_cols=40 Identities=43% Similarity=0.727 Sum_probs=35.1
Q ss_pred CCCcceEEEeccchhh-hcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 74 EDESFDAVIDKGTLDS-LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
...+||+|++..++++ . .....+++.+.+.|+|||.+++.
T Consensus 63 ~~~~~d~i~~~~~~~~~~-------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 63 ADESFDVIISDPPLHHLV-------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cCCceEEEEEccceeehh-------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 3568999999998877 4 78999999999999999999765
No 105
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.38 E-value=7.4e-07 Score=73.02 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=52.7
Q ss_pred CCeEEEEcCCccc------------------------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhH
Q 028050 50 SSRVLMVGCGNAH------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPIS 99 (214)
Q Consensus 50 ~~~iLdiGcG~G~------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~ 99 (214)
..++||||+|.|. .+.+..++. -.+.+||+|.|.++|+.- ..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~-~~~~~fDvIscLNvLDRc-------~~ 166 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQ-QTDFKFDVISCLNVLDRC-------DR 166 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhh-ccCCceEEEeehhhhhcc-------CC
Confidence 4589999999997 333444444 345689999999999988 89
Q ss_pred HHHHHHHHHHhccCCcEEEEEE
Q 028050 100 ASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 100 ~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+..+++.+++.|+|+|+++++-
T Consensus 167 P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 167 PLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999999999999998853
No 106
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.36 E-value=1.4e-06 Score=78.89 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCcceEEEeccchh-------------------hhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 74 EDESFDAVIDKGTLD-------------------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~-------------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
+.++||+|+++..+. +++.|.++......+++++.++|+|||.+++.
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 345899999854211 23344456667788999999999999999774
No 107
>PRK14967 putative methyltransferase; Provisional
Probab=98.35 E-value=2e-06 Score=69.67 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=50.3
Q ss_pred CCCCCeEEEEcCCccc---------------------------------------eeeeccCCccCCCCcceEEEeccch
Q 028050 47 IPTSSRVLMVGCGNAH---------------------------------------LQMDVRDMSFFEDESFDAVIDKGTL 87 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~---------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l 87 (214)
+.++.+|||+|||+|. ...|+.+. +++++||+|+++..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCC
Confidence 5678899999999997 22333221 356789999997543
Q ss_pred hhh--------------cCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 88 DSL--------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 88 ~~~--------------~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..- ..+..+......+++++.++|||||+++++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 211 011122234678899999999999999886433
No 108
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.34 E-value=5.4e-07 Score=74.33 Aligned_cols=58 Identities=29% Similarity=0.346 Sum_probs=44.0
Q ss_pred eeeeccCCccCCC-----CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 63 LQMDVRDMSFFED-----ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 63 ~~~d~~~~~~~~~-----~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+.+|+++.+.+.. ..||+|++..+++.+. .+.+...++++++.++|||||.|+++..-
T Consensus 139 v~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~---~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 139 VPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC---KDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred EEeeccCCCCCCccccCccchhhhhhhHHHHHHc---CCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 6688887654433 3599999999998772 24568899999999999999999997653
No 109
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.33 E-value=2e-06 Score=73.13 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=33.3
Q ss_pred CCCcceEEEeccchh------------------hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 74 EDESFDAVIDKGTLD------------------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~------------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+.++||+|+++..+. .++.|..+......+++++.++|+|||++++..
T Consensus 198 ~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 198 PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 446899999873210 112223344567899999999999999998754
No 110
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.32 E-value=2e-06 Score=73.81 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=55.4
Q ss_pred hCCCCCeEEEEcCCccc---------------------------------------eeeeccCCccCCCCcceEEEeccc
Q 028050 46 YIPTSSRVLMVGCGNAH---------------------------------------LQMDVRDMSFFEDESFDAVIDKGT 86 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~---------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~ 86 (214)
.++++.+|||+|||+|. .++|+.+++ +.+++||+|++...
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPP 257 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCC
Confidence 35678899999999997 356777776 66789999999754
Q ss_pred hhhhc-CCCC-ChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 87 LDSLM-CGTN-APISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 87 l~~~~-~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+..-. .... ......++++++.++|||||+++++...
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 32110 0000 1133689999999999999999887644
No 111
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.32 E-value=2.9e-06 Score=70.13 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=33.4
Q ss_pred CcceEEEeccchh-------------------hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 76 ESFDAVIDKGTLD-------------------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 76 ~~fD~V~~~~~l~-------------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
++||+|+++.-+. .+..|.++.+....++..+.++|||||++++...
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5799999875431 1222233445567999999999999999987654
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.31 E-value=1.1e-06 Score=76.43 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCccc-----------------------------------------eeeeccCC-ccCCCCcceEEEeccc
Q 028050 49 TSSRVLMVGCGNAH-----------------------------------------LQMDVRDM-SFFEDESFDAVIDKGT 86 (214)
Q Consensus 49 ~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~-~~~~~~~fD~V~~~~~ 86 (214)
.+..+||||||+|. +++|+..+ ..++++++|.|+++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 35589999999998 45565443 2267889999987643
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 87 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 87 l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.-+. -.....-....++++++|+|+|||.+.+.|-.
T Consensus 202 dPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 2110 00000001268999999999999999997643
No 113
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.30 E-value=2.2e-06 Score=70.11 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCCccc----------------------------------eeeeccCCccCCCCcceEEEeccchhhhcCC
Q 028050 48 PTSSRVLMVGCGNAH----------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCG 93 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~----------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~ 93 (214)
.+..+|+|||+|+|. +.+|+. -+ ++. +|+|+..++||..
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~-~P~--~D~~~l~~vLh~~--- 171 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DP-LPV--ADVYLLRHVLHDW--- 171 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TC-CSS--ESEEEEESSGGGS---
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hh-hcc--ccceeeehhhhhc---
Confidence 355689999999998 455655 23 454 9999999999998
Q ss_pred CCChhHHHHHHHHHHHhccCC--cEEEEEEc
Q 028050 94 TNAPISASQMLGEVSRLLKPG--GIYMLITY 122 (214)
Q Consensus 94 ~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~ 122 (214)
+.++..++|+++++.|+|| |++++.+.
T Consensus 172 --~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 172 --SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp ---HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred --chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 7789999999999999999 99999775
No 114
>PRK04266 fibrillarin; Provisional
Probab=98.30 E-value=2e-06 Score=70.01 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=25.4
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
++||+|++... .+.....+++++.++|||||.++++
T Consensus 140 ~~~D~i~~d~~---------~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 140 EKVDVIYQDVA---------QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ccCCEEEECCC---------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 45888874311 1123356789999999999999984
No 115
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.28 E-value=8.3e-06 Score=64.72 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 99 SASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 99 ~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
....+++++.++|+|||++++...+
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 5678999999999999999887754
No 116
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.3e-06 Score=68.25 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=48.0
Q ss_pred hHHHHHh-hCCCCCeEEEEcCCccc---------------------------------------eeeeccCCccCCCCcc
Q 028050 39 LRPFVRK-YIPTSSRVLMVGCGNAH---------------------------------------LQMDVRDMSFFEDESF 78 (214)
Q Consensus 39 l~~~l~~-~~~~~~~iLdiGcG~G~---------------------------------------~~~d~~~~~~~~~~~f 78 (214)
...++.. .+.++.+|||||||+|+ .++|...-- -+...|
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~-~~~aPy 139 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW-PEEAPY 139 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-CCCCCc
Confidence 3344443 46789999999999998 344443221 134789
Q ss_pred eEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 79 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 79 D~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
|.|+.......+ -+.+.+.||+||++++..-
T Consensus 140 D~I~Vtaaa~~v-------------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEV-------------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCC-------------CHHHHHhcccCCEEEEEEc
Confidence 999988766444 2346788999999987653
No 117
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=67.75 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=77.9
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch-hhhhhc-cccccceEEEEEeeCCCCc
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHL-KWKVYNWKIELYIIARPGF 151 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~ 151 (214)
+.+..|++......|.+..-........++...+++.|||||++++.++.... ..+.-. .....+-..+...+...||
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGF 198 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGF 198 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcc
Confidence 34567777765555544333334467889999999999999999999875221 100000 0001111122344566778
Q ss_pred cCCCCCCCCCcccccCcccCCCCCCCccccCCCCCcEEEEEEEecC
Q 028050 152 EKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMN 197 (214)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~yi~~~~K~~ 197 (214)
...++ ..+..++-+....++.+..++...-.|+|.++|+.
T Consensus 199 kl~ae------S~ilaNp~D~~~i~v~dp~~rGetDrf~~kF~Kp~ 238 (238)
T COG4798 199 KLEAE------SEILANPDDPRGIWVFDPTIRGETDRFTLKFRKPA 238 (238)
T ss_pred eeeee------ehhhcCCCCCCceeecCccccCccceeEEEeecCC
Confidence 87766 77778888888888888888888999999999973
No 118
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.24 E-value=1.7e-06 Score=68.89 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=36.0
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
...|+.+.. ...+.||+|+|.+++-++ +.+...++++.+++.|+|||.|++-.
T Consensus 123 ~~~NL~~~~-~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 123 RRHNLLDPD-PPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp EE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred EecccCCCC-cccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 445555522 356789999999999988 77889999999999999999997754
No 119
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=4.9e-06 Score=69.70 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=34.6
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
++||+|+++.-+|.- -+....-..+++....++|++||.|.++....
T Consensus 223 ~kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 223 GKFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred ccccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 389999999988732 00111223489999999999999999987643
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.19 E-value=5.4e-06 Score=70.67 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=27.4
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 118 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 118 (214)
+++||+|++..+++|+ +.+....+++.+.+. .+||.++
T Consensus 210 ~~~fD~Vv~~~vL~H~-----p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 210 SGKYDTVTCLDVLIHY-----PQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred CCCcCEEEEcCEEEec-----CHHHHHHHHHHHHhh-cCCEEEE
Confidence 5789999999999887 444556677777754 5555543
No 121
>PRK14968 putative methyltransferase; Provisional
Probab=98.19 E-value=6.7e-06 Score=64.25 Aligned_cols=49 Identities=27% Similarity=0.436 Sum_probs=33.1
Q ss_pred CCCcceEEEeccchhh-------------h-cCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 74 EDESFDAVIDKGTLDS-------------L-MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~-------------~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.+.+||+|+++..+.. . ..+..+......+++++.++|||||.+++...
T Consensus 87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3457999998765422 1 11112234567899999999999999877653
No 122
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.16 E-value=5.5e-06 Score=69.67 Aligned_cols=76 Identities=28% Similarity=0.467 Sum_probs=57.7
Q ss_pred HHHhhCCCCCeEEEEcCCccc----------------------------------------------eeeeccC------
Q 028050 42 FVRKYIPTSSRVLMVGCGNAH----------------------------------------------LQMDVRD------ 69 (214)
Q Consensus 42 ~l~~~~~~~~~iLdiGcG~G~----------------------------------------------~~~d~~~------ 69 (214)
++..+.+++..++++|||-|- +.+|...
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 445577889999999999996 3444432
Q ss_pred CccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 70 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 70 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
++ +.+.+||+|-|.+++|.-|. ..+...-++.++.+.|||||+++-+.
T Consensus 190 ~e-~~dp~fDivScQF~~HYaFe---tee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 190 LE-FKDPRFDIVSCQFAFHYAFE---TEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred cc-CCCCCcceeeeeeeEeeeec---cHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 22 45556999999999987653 33678899999999999999995544
No 123
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.15 E-value=3.6e-06 Score=68.95 Aligned_cols=74 Identities=23% Similarity=0.433 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCCccc------------------------------------------eeeeccCCcc-CCCCcceEEEec
Q 028050 48 PTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSF-FEDESFDAVIDK 84 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~-~~~~~fD~V~~~ 84 (214)
+...+|||+|||+|. ++.|+.++.. ....+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 346799999999998 5667766543 334579999999
Q ss_pred cchhhhcCC--C---------CChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 85 GTLDSLMCG--T---------NAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 85 ~~l~~~~~~--~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.-+...-.. . ...-+.+++++.+.+.|||||.+.++-
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 876433111 0 011256889999999999999998875
No 124
>PTZ00146 fibrillarin; Provisional
Probab=98.13 E-value=9.5e-06 Score=68.11 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=50.6
Q ss_pred ccccccchHHHHH-----hhCCCCCeEEEEcCCccc----------------------------------------eeee
Q 028050 32 WYQRYSALRPFVR-----KYIPTSSRVLMVGCGNAH----------------------------------------LQMD 66 (214)
Q Consensus 32 w~~~~~~l~~~l~-----~~~~~~~~iLdiGcG~G~----------------------------------------~~~d 66 (214)
|-.....|...+. -.+.++.+|||+|||+|. +..|
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~D 189 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIED 189 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECC
Confidence 4444445554332 135789999999999998 2222
Q ss_pred ccCC---ccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 67 VRDM---SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 67 ~~~~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
+... . ...++||+|++... .. .+...++.++.++|||||.|++.
T Consensus 190 a~~p~~y~-~~~~~vDvV~~Dva--~p-------dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 190 ARYPQKYR-MLVPMVDVIFADVA--QP-------DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ccChhhhh-cccCCCCEEEEeCC--Cc-------chHHHHHHHHHHhccCCCEEEEE
Confidence 2210 1 12346899987652 12 35566777999999999999883
No 125
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.12 E-value=5e-06 Score=66.61 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=35.6
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..+||+|.+..++.|+ ..++.-++|..+...|+|+|++++=+
T Consensus 120 ~~~YDlIW~QW~lghL-----TD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHL-----TDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp TT-EEEEEEES-GGGS------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEeEEEehHhhccC-----CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 4699999999999999 66799999999999999999998843
No 126
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.12 E-value=2.9e-06 Score=68.20 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=40.6
Q ss_pred hCCCCCeEEEEcCCccc------------------------------------------eeeeccCCccCCCCcceEEEe
Q 028050 46 YIPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFFEDESFDAVID 83 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~~~~~fD~V~~ 83 (214)
.++|+.+|||||||+|+ .++|..... -..+.||.|++
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~-~~~apfD~I~v 147 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW-PEEAPFDRIIV 147 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-GGG-SEEEEEE
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-ccCCCcCEEEE
Confidence 36799999999999998 444544322 24468999999
Q ss_pred ccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 84 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
......+ -..+.+.|++||++++.-
T Consensus 148 ~~a~~~i-------------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 148 TAAVPEI-------------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp SSBBSS---------------HHHHHTEEEEEEEEEEE
T ss_pred eeccchH-------------HHHHHHhcCCCcEEEEEE
Confidence 8766433 234778899999998754
No 127
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.11 E-value=1.1e-05 Score=67.78 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=36.8
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.+.||+|+|.+++.|+ +.+...++++.+.+.|+|||+|++-
T Consensus 221 ~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 221 PGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4789999999999888 6788999999999999999988664
No 128
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.09 E-value=1.5e-06 Score=77.04 Aligned_cols=47 Identities=30% Similarity=0.466 Sum_probs=37.3
Q ss_pred cCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 68 RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 68 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..+| |++++||+|.|..++.... .+-.-++-++.|+|+|||+++.+.
T Consensus 173 ~rLP-fp~~~fDmvHcsrc~i~W~------~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 173 QRLP-FPSNAFDMVHCSRCLIPWH------PNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cccc-CCccchhhhhcccccccch------hcccceeehhhhhhccCceEEecC
Confidence 4577 9999999999998875441 222468999999999999998764
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.05 E-value=2e-05 Score=70.05 Aligned_cols=77 Identities=23% Similarity=0.353 Sum_probs=49.1
Q ss_pred CCCCCeEEEEcCCccc----------------------------------------eeeeccCCcc-CCCCcceEEEecc
Q 028050 47 IPTSSRVLMVGCGNAH----------------------------------------LQMDVRDMSF-FEDESFDAVIDKG 85 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~----------------------------------------~~~d~~~~~~-~~~~~fD~V~~~~ 85 (214)
..++.+|||+|||+|. ++.|+.++.. +..++||.|++..
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 4578899999999997 3345444321 2346799999643
Q ss_pred chhhh--cCCC------CCh-------hHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 86 TLDSL--MCGT------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 86 ~l~~~--~~~~------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..... +... ... ....+++.++.+.|||||++++++.+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 21100 0000 011 12458999999999999999988753
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.04 E-value=1.7e-05 Score=70.83 Aligned_cols=24 Identities=33% Similarity=0.684 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccCCcEEEEEEcC
Q 028050 100 ASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 100 ~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..+++.++.+.|||||+++..|.+
T Consensus 356 q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 356 QAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 457999999999999999998865
No 131
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.04 E-value=1.5e-05 Score=70.76 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhccCCcEEEEEEcC
Q 028050 100 ASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 100 ~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..+++.++.++|||||+++.+|.+
T Consensus 347 Q~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 347 QSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 578999999999999999998765
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.04 E-value=1.5e-05 Score=70.83 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=50.4
Q ss_pred hCCCCCeEEEEcCCccc------------------------------------------eeeeccCCccCCCCcceEEEe
Q 028050 46 YIPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFFEDESFDAVID 83 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~~~~~fD~V~~ 83 (214)
.+.++.+|||+|||+|. .+.|..+++.+..++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 35678899999999996 334444443234568999987
Q ss_pred ccchhhh--cCCC------CCh-------hHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 84 KGTLDSL--MCGT------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 84 ~~~l~~~--~~~~------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
....... +... .+. ....+++.++.+.|||||.++.+|.+
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 3221100 0000 000 13478899999999999999998765
No 133
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.01 E-value=1.5e-05 Score=71.01 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccCCcEEEEEEcC
Q 028050 100 ASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 100 ~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..+++.++.+.|||||+++.+|.+
T Consensus 363 Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 363 QAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCC
Confidence 578999999999999999887754
No 134
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.00 E-value=2.4e-05 Score=65.10 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=38.2
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..+.||+|+|.+++-++ +.+...+++..++..|+|||.|++-.
T Consensus 199 ~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 199 FLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 44679999999999888 77899999999999999999998743
No 135
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.3e-05 Score=64.86 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=41.5
Q ss_pred CcceEEEeccch------------------hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE-cCCchhhhhhccc
Q 028050 76 ESFDAVIDKGTL------------------DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT-YGDPKARMIHLKW 134 (214)
Q Consensus 76 ~~fD~V~~~~~l------------------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~ 134 (214)
++||+|+++.-+ ..++.|..+.+...+++.++.+.|+|||.+++-. +++.......+..
T Consensus 175 ~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~ 252 (280)
T COG2890 175 GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFED 252 (280)
T ss_pred CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHh
Confidence 389999997432 1344555667788999999999999999987743 4455544445543
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.99 E-value=2.1e-05 Score=65.42 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhccCCcEEEEEEcC
Q 028050 100 ASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 100 ~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..++|.++.+.|||||+++.+|.+
T Consensus 178 q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 178 QKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCC
Confidence 457999999999999999988755
No 137
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=7e-06 Score=66.11 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCccc--------------------------------------eeeeccCCccCCCCcceEEEeccchhh
Q 028050 48 PTSSRVLMVGCGNAH--------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDS 89 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~--------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~ 89 (214)
+....++|||||-|. .+.|-+.++ |.+++||+|+++-.+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhccc-ccccchhhhhhhhhhhh
Confidence 345589999999997 556666777 89999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 90 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+ .+....+..|...|||+|.++.+-++
T Consensus 150 ~-------NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 150 T-------NDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred h-------ccCchHHHHHHHhcCCCccchhHHhc
Confidence 8 88999999999999999999876554
No 138
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=7.2e-06 Score=62.09 Aligned_cols=65 Identities=29% Similarity=0.482 Sum_probs=50.6
Q ss_pred eEEEEcCCccc-----------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCC
Q 028050 52 RVLMVGCGNAH-----------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG 114 (214)
Q Consensus 52 ~iLdiGcG~G~-----------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg 114 (214)
-.+-||||.=. ..+++.....|.+++.|+|.+.++++|+ ....-..++++++|.||||
T Consensus 5 ~kv~ig~G~~r~npgWi~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~ 79 (185)
T COG4627 5 EKVKIGAGGKRVNPGWIITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPG 79 (185)
T ss_pred eEEEEeccccccCCCceeeehhcccccchhhhhhhhccCCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcC
Confidence 36778888654 2233333333889999999999999999 4467788999999999999
Q ss_pred cEEEEEE
Q 028050 115 GIYMLIT 121 (214)
Q Consensus 115 G~l~~~~ 121 (214)
|+|-|+.
T Consensus 80 G~LriAv 86 (185)
T COG4627 80 GKLRIAV 86 (185)
T ss_pred cEEEEEc
Confidence 9998864
No 139
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.88 E-value=2.8e-05 Score=66.51 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=23.4
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+||+|++...+..+ ...+.++|+|||++++..
T Consensus 148 ~~fD~Ii~~~g~~~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTVGVDEV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECCchHHh-------------HHHHHHhcCCCCEEEEEe
Confidence 579999886544332 334678999999988754
No 140
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.87 E-value=1.8e-05 Score=68.65 Aligned_cols=72 Identities=31% Similarity=0.496 Sum_probs=62.1
Q ss_pred HHhhCCCCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcceEE
Q 028050 43 VRKYIPTSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFDAV 81 (214)
Q Consensus 43 l~~~~~~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD~V 81 (214)
+.....++..++|+|||.|. +.+|+-+.+ +++..||.+
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~v 182 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDGV 182 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCcE
Confidence 34456678899999999997 556667777 999999999
Q ss_pred EeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 82 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
-+..+..|. .+....++|+.|++||||++++-++
T Consensus 183 ~~ld~~~~~-------~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 183 RFLEVVCHA-------PDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEEeecccC-------CcHHHHHHHHhcccCCCceEEeHHH
Confidence 999999999 8999999999999999999988543
No 141
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=2.2e-05 Score=62.35 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=52.0
Q ss_pred cchHHHHHhhCCCCCeEEEEcCCccc-----------------------------------------------------e
Q 028050 37 SALRPFVRKYIPTSSRVLMVGCGNAH-----------------------------------------------------L 63 (214)
Q Consensus 37 ~~l~~~l~~~~~~~~~iLdiGcG~G~-----------------------------------------------------~ 63 (214)
..+.+.|..++.||.+.||+|.|+|+ +
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 44667778889999999999999998 3
Q ss_pred eeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 64 QMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 64 ~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+|..... -+...||.|.+- ....+..+++...|++||++++..
T Consensus 150 vGDgr~g~-~e~a~YDaIhvG-------------Aaa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 150 VGDGRKGY-AEQAPYDAIHVG-------------AAASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eCCccccC-CccCCcceEEEc-------------cCccccHHHHHHhhccCCeEEEee
Confidence 44444443 355678888664 234556677888899999997754
No 142
>PRK00811 spermidine synthase; Provisional
Probab=97.86 E-value=3.1e-05 Score=65.17 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=28.7
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.++||+|++..+- .. +....-....+++.+.+.|+|||++++.
T Consensus 148 ~~~yDvIi~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 ENSFDVIIVDSTD-PV--GPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCcccEEEECCCC-CC--CchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 5689999985421 11 1000112368899999999999999874
No 143
>PHA03411 putative methyltransferase; Provisional
Probab=97.85 E-value=5.2e-05 Score=63.15 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCccc------------------------------------eeeeccCCccCCCCcceEEEeccchhhhcC
Q 028050 49 TSSRVLMVGCGNAH------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMC 92 (214)
Q Consensus 49 ~~~~iLdiGcG~G~------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~ 92 (214)
...+|||+|||+|. +++|+.+.. ...+||+|+++..+.+.-.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE--SNEKFDVVISNPPFGKINT 141 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--ccCCCcEEEEcCCccccCc
Confidence 45699999999997 344554443 3468999999988876411
Q ss_pred C-----------CCChhH--HHHHHHHHHHhccCCcEEEEEE
Q 028050 93 G-----------TNAPIS--ASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 93 ~-----------~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
. ..+.+. ..+.+....++|+|+|.+.+.-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 1 011111 3678888999999999877663
No 144
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.81 E-value=4.2e-05 Score=63.59 Aligned_cols=37 Identities=30% Similarity=0.497 Sum_probs=33.2
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
++||+|+..+.++.. .++-.+++.|.++|||||..+=
T Consensus 164 ~~~d~VvT~FFIDTA-------~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 164 GSFDVVVTCFFIDTA-------ENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcccEEEEEEEeech-------HHHHHHHHHHHHHhccCCEEEe
Confidence 699999999888877 8999999999999999997643
No 145
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00011 Score=60.20 Aligned_cols=64 Identities=36% Similarity=0.412 Sum_probs=50.2
Q ss_pred hCCCCCeEEEEcCCccc-------------------------------------------eeeeccCCccCCCCcceEEE
Q 028050 46 YIPTSSRVLMVGCGNAH-------------------------------------------LQMDVRDMSFFEDESFDAVI 82 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~-------------------------------------------~~~d~~~~~~~~~~~fD~V~ 82 (214)
.+.|+++|||.|.|+|. ...|+.+.. +++ .||+|+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~~~-~vDav~ 168 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-DEE-DVDAVF 168 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-ccc-ccCEEE
Confidence 57799999999999997 334555444 333 899997
Q ss_pred eccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 83 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.- + .++-++++.+.++|||||.+++-.-+
T Consensus 169 LD-----m-------p~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 169 LD-----L-------PDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred Ec-----C-------CChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 52 3 78999999999999999999886544
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.80 E-value=5.7e-05 Score=67.43 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=19.8
Q ss_pred HHHHHHHHHhccCCcEEEEEEcC
Q 028050 101 SQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 101 ~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..++.++.++|||||+++.++.+
T Consensus 359 ~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 359 LEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCC
Confidence 56899999999999999877644
No 147
>PRK04457 spermidine synthase; Provisional
Probab=97.77 E-value=3.7e-05 Score=63.99 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=29.8
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.++||+|++.. ++.. +....-....+++++.++|+|||++++..+.
T Consensus 134 ~~~yD~I~~D~-~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 134 RHSTDVILVDG-FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCEEEEeC-CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 35799998742 1111 0001112479999999999999999885443
No 148
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.76 E-value=7.3e-05 Score=61.17 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=27.9
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.++||+|++... ......+++.+.+.|+|||++++-
T Consensus 142 ~~~fD~VfiDa~----------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 142 KPEFDFAFVDAD----------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCEEEECCC----------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 458999987532 245678899999999999998763
No 149
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.74 E-value=3.8e-05 Score=65.41 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=47.9
Q ss_pred CCCCCeEEEEcCCccc----------------------------------------eeeeccCCccCCCCcceEEEeccc
Q 028050 47 IPTSSRVLMVGCGNAH----------------------------------------LQMDVRDMSFFEDESFDAVIDKGT 86 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~----------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~ 86 (214)
+=.+.+|||||||+|. .++.++++. +|.++.|+|++-.+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhh
Confidence 4468899999999998 455566665 66789999998665
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHhccCCcEEE
Q 028050 87 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 118 (214)
Q Consensus 87 l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 118 (214)
=..++.+ .=...++-.=-+.|+|||.++
T Consensus 137 Gy~Ll~E----sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYE----SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHh----hhhhhhhhhhhhccCCCceEc
Confidence 4444222 334556666678999999763
No 150
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.61 E-value=8.5e-05 Score=59.11 Aligned_cols=53 Identities=26% Similarity=0.271 Sum_probs=34.2
Q ss_pred eeeeccC-Ccc-CCCCcceEEEeccchhhhcCCCCChh---------HHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 63 LQMDVRD-MSF-FEDESFDAVIDKGTLDSLMCGTNAPI---------SASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 63 ~~~d~~~-~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+++|+.. +.. ++++++|.|...+.= |+. -...++..++++|+|||.+.+.|=.
T Consensus 72 ~~~da~~~l~~~~~~~~v~~i~i~FPD--------PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 72 LRGDARELLRRLFPPGSVDRIYINFPD--------PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp EES-CTTHHHHHSTTTSEEEEEEES-------------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred EEccHHHHHhhcccCCchheEEEeCCC--------CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 5566655 221 456899998875321 111 2268999999999999999888743
No 151
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.60 E-value=0.00034 Score=56.05 Aligned_cols=67 Identities=30% Similarity=0.421 Sum_probs=54.2
Q ss_pred CeEEEEcCCccc-----------------------eeeeccCCc--cCCCCcceEEEeccchhhhcCCCCChhHHHHHHH
Q 028050 51 SRVLMVGCGNAH-----------------------LQMDVRDMS--FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLG 105 (214)
Q Consensus 51 ~~iLdiGcG~G~-----------------------~~~d~~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~ 105 (214)
.++|||||=+.. .+.|+.+.| .-++++||+|.++-+|.++ .++..+.+++.
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV----P~p~~RG~Ml~ 128 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFV----PDPKQRGEMLR 128 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeC----CCHHHHHHHHH
Confidence 599999998553 667776665 1247899999999999988 23478899999
Q ss_pred HHHHhccCCcE-----EEEEE
Q 028050 106 EVSRLLKPGGI-----YMLIT 121 (214)
Q Consensus 106 ~~~~~LkpgG~-----l~~~~ 121 (214)
.+.+.|+|+|. |+++.
T Consensus 129 r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 129 RAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred HHHHHhCCCCccCcceEEEEe
Confidence 99999999999 77764
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=97.59 E-value=0.00028 Score=57.54 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=49.0
Q ss_pred cccchHHHHHhhCCCCCeEEEEcCCccc---------------------------------------eeeeccCCccCCC
Q 028050 35 RYSALRPFVRKYIPTSSRVLMVGCGNAH---------------------------------------LQMDVRDMSFFED 75 (214)
Q Consensus 35 ~~~~l~~~l~~~~~~~~~iLdiGcG~G~---------------------------------------~~~d~~~~~~~~~ 75 (214)
.+..+...+......+.+|||+|||+|. ...|+.... + +
T Consensus 35 TP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~-~-~ 112 (241)
T PHA03412 35 TPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTE-F-D 112 (241)
T ss_pred CCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc-c-c
Confidence 3344544333223346799999999997 344444333 2 4
Q ss_pred CcceEEEeccchhhhcCCC-----CChhHHHHHHHHHHHhccCCcE
Q 028050 76 ESFDAVIDKGTLDSLMCGT-----NAPISASQMLGEVSRLLKPGGI 116 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~-----~~~~~~~~~l~~~~~~LkpgG~ 116 (214)
++||+|+++.-+.-.-... .+..-...+++.+.+++++|+.
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 6899999998775332111 1223456789999996666664
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.59 E-value=0.00012 Score=61.10 Aligned_cols=44 Identities=18% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.++||+|++..... . +....--...+++.+.+.|+|||++++..
T Consensus 143 ~~~yDvIi~D~~~~-~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 143 ENTFDVIIVDSTDP-V--GPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCccEEEEeCCCC-C--CcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 45899998754321 1 10000124688999999999999998863
No 154
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.56 E-value=5.1e-05 Score=67.68 Aligned_cols=49 Identities=27% Similarity=0.479 Sum_probs=31.9
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEE
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 118 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 118 (214)
+++|++++. . .++.|+|++= .+..+.+. +-..+.+....|.|||||+++
T Consensus 246 i~~d~r~v~-l-pekvDIIVSE-lLGsfg~n----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 246 IHGDMREVE-L-PEKVDIIVSE-LLGSFGDN----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EES-TTTSC-H-SS-EEEEEE----BTTBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred EeCcccCCC-C-CCceeEEEEe-ccCCcccc----ccCHHHHHHHHhhcCCCCEEe
Confidence 677888776 3 4589999863 33333333 456677899999999999763
No 155
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.56 E-value=0.00013 Score=68.65 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=30.9
Q ss_pred CCcceEEEeccchhhhcCC----CCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 75 DESFDAVIDKGTLDSLMCG----TNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.++||+|++..-...-.-. .....+...++..+.++|+|||.+++.+.
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4689999986432100000 00124677899999999999999977653
No 156
>PRK01581 speE spermidine synthase; Validated
Probab=97.55 E-value=0.00016 Score=62.53 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=29.0
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.++||+|++... +.. ......-.-..+++.+++.|+|||++++..
T Consensus 224 ~~~YDVIIvDl~-DP~-~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 224 SSLYDVIIIDFP-DPA-TELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCCccEEEEcCC-Ccc-ccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 457999997632 111 000111234679999999999999987754
No 157
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00024 Score=57.78 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=33.3
Q ss_pred CCCcceEEEeccch--hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 74 EDESFDAVIDKGTL--DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 74 ~~~~fD~V~~~~~l--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
....||+|+|..+- -|+-.|+ +.+..+++.+.++|.|||+|++-
T Consensus 163 ~~~~fDiIlcLSiTkWIHLNwgD---~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKWIHLNWGD---DGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccEEEEEEeeeeEeccccc---HHHHHHHHHHHHhhCcCcEEEEc
Confidence 34679999986543 3443332 57899999999999999999774
No 158
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.48 E-value=0.0003 Score=54.44 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCCccc-------------------------------------eeeeccCCccCCCCcceEEEeccchh
Q 028050 47 IPTSSRVLMVGCGNAH-------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLD 88 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~-------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~ 88 (214)
+.++.+|||||||+|. +.+|+.+++ +++..||.|+++-.++
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcc
Confidence 3567799999999998 445566665 5555799999876553
No 159
>PLN02366 spermidine synthase
Probab=97.45 E-value=0.00036 Score=59.40 Aligned_cols=42 Identities=24% Similarity=0.511 Sum_probs=27.6
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
+++||+|++...- .. +....-....+++.+.++|+|||++++
T Consensus 163 ~~~yDvIi~D~~d-p~--~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 163 EGTYDAIIVDSSD-PV--GPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CCCCCEEEEcCCC-CC--CchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 4579999875322 11 100111246789999999999999976
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.44 E-value=0.00027 Score=55.09 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=30.2
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..+||+|++..+++.- +....++..+.++|+++|.+++..
T Consensus 117 ~~~~D~IlasDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 117 PHSFDVILASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -SSBSEEEEES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cccCCEEEEecccchH-------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 4579999999998765 889999999999999999855543
No 161
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.39 E-value=0.00025 Score=55.89 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=34.6
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
++..+++ . ....+||+|++..+ .....+++-+...|++||.+++.--
T Consensus 103 ~~~R~E~-~-~~~~~fd~v~aRAv-----------~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 103 INGRAEE-P-EYRESFDVVTARAV-----------APLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp EES-HHH-T-TTTT-EEEEEEESS-----------SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred EEeeecc-c-ccCCCccEEEeehh-----------cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 4444454 2 45678999999865 4668899999999999999988753
No 162
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.00048 Score=57.96 Aligned_cols=37 Identities=24% Similarity=0.513 Sum_probs=32.7
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
++||+|+.+..++.- .++-.+++.|..+|||||+.+=
T Consensus 258 ~~~d~VvTcfFIDTa-------~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA-------HNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred CccceEEEEEEeech-------HHHHHHHHHHHHhccCCcEEEe
Confidence 479999998777766 8999999999999999999864
No 163
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.00082 Score=57.57 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=60.4
Q ss_pred hHHHHHh--hCCCCCeEEEEcCCccc----------------------------------------eeeeccCCccCCCC
Q 028050 39 LRPFVRK--YIPTSSRVLMVGCGNAH----------------------------------------LQMDVRDMSFFEDE 76 (214)
Q Consensus 39 l~~~l~~--~~~~~~~iLdiGcG~G~----------------------------------------~~~d~~~~~~~~~~ 76 (214)
+...+.+ .+.+|..|||-=||||. ...|+++++ +++.
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~~~ 263 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LRDN 263 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CCCC
Confidence 4444433 56789999999999998 334899999 8888
Q ss_pred cceEEEeccchhhhc-CCCCC-hhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 77 SFDAVIDKGTLDSLM-CGTNA-PISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~-~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
+||.|++-.-+.--. ..... .+-..++++.++++||+||++++...
T Consensus 264 ~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999865443221 11111 23478999999999999999988764
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.32 E-value=0.0012 Score=50.80 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=60.2
Q ss_pred hHHHHHhhCC--CCCeEEEEcCCccc-------------------------------------eeeeccCCc----cCCC
Q 028050 39 LRPFVRKYIP--TSSRVLMVGCGNAH-------------------------------------LQMDVRDMS----FFED 75 (214)
Q Consensus 39 l~~~l~~~~~--~~~~iLdiGcG~G~-------------------------------------~~~d~~~~~----~~~~ 75 (214)
+.......+. .+..|||+|.|||. +.+|+.++. .+..
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 4444444444 45589999999997 445554432 2567
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
..||.|++.--+-.+ +....-++++.+...|.+||.++..+++.
T Consensus 116 q~~D~viS~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 116 QFFDSVISGLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred CeeeeEEeccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 789999987666555 55677899999999999999999999873
No 165
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.32 E-value=0.00044 Score=60.88 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCcceEEEeccchhhhcCCC----CChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 75 DESFDAVIDKGTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.++||+|++..-...- .. ........++..+.++|+|||.+++.+.+
T Consensus 291 ~~~fDlVilDPP~f~~--~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 291 GEKFDVIVMDPPKFVE--NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCEEEECCCCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4589999987543111 00 00124566777889999999999876643
No 166
>PRK03612 spermidine synthase; Provisional
Probab=97.28 E-value=0.00027 Score=64.41 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+++||+|++....... .....-...++++.+.++|||||++++..
T Consensus 371 ~~~fDvIi~D~~~~~~--~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 AEKFDVIIVDLPDPSN--PALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCEEEEeCCCCCC--cchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 4689999986432110 00000123568999999999999998754
No 167
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.27 E-value=0.00036 Score=57.45 Aligned_cols=65 Identities=32% Similarity=0.436 Sum_probs=44.2
Q ss_pred hCCCCCeEEEEcCCccc-------------------------------------------eeeeccCCccCC---CCcce
Q 028050 46 YIPTSSRVLMVGCGNAH-------------------------------------------LQMDVRDMSFFE---DESFD 79 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~-------------------------------------------~~~d~~~~~~~~---~~~fD 79 (214)
.+.||++|||.|.|+|. .+.|+.+-. |. +..+|
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g-~~~~~~~~~D 115 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG-FDEELESDFD 115 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---STT-TTSEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc-ccccccCccc
Confidence 57899999999999998 455654333 32 35799
Q ss_pred EEEeccchhhhcCCCCChhHHHHHHHHHHHhc-cCCcEEEEEEcC
Q 028050 80 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLITYG 123 (214)
Q Consensus 80 ~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~ 123 (214)
.|+.- + .++-.++..+.++| |+||++++-.-+
T Consensus 116 avfLD-----l-------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 116 AVFLD-----L-------PDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp EEEEE-----S-------SSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred EEEEe-----C-------CCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 98752 3 67888999999999 899999887654
No 168
>PLN02672 methionine S-methyltransferase
Probab=97.23 E-value=0.00063 Score=66.37 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=23.6
Q ss_pred CCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 94 TNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 94 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.++..-..+++.++.++|+|||.+++-.
T Consensus 251 ~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 251 QFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 5667778999999999999999987643
No 169
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0017 Score=50.69 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=45.9
Q ss_pred CCCcceEEEeccchh--------------hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC--Cchhhhhhcccccc
Q 028050 74 EDESFDAVIDKGTLD--------------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG--DPKARMIHLKWKVY 137 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~--------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~ 137 (214)
..++.|+++.+.-+- ....|..+.+-..+++..+-.+|.|.|.++++... .++....++.. .
T Consensus 107 ~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~--~ 184 (209)
T KOG3191|consen 107 RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEK--K 184 (209)
T ss_pred ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhh--c
Confidence 447888888765331 12233355566788899999999999999887653 55555555543 3
Q ss_pred ceEEEEEeeCC
Q 028050 138 NWKIELYIIAR 148 (214)
Q Consensus 138 ~~~~~~~~~~~ 148 (214)
.|.......++
T Consensus 185 g~~~~~~~~Rk 195 (209)
T KOG3191|consen 185 GYGVRIAMQRK 195 (209)
T ss_pred ccceeEEEEEe
Confidence 34444444444
No 170
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.18 E-value=0.00046 Score=56.17 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCCcEEEEEEc
Q 028050 101 SQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 101 ~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
..+++.+.++|+|||.+.+.|=
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred HHHHHHHHHHccCCCEEEEEec
Confidence 6899999999999999999873
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.13 E-value=0.00069 Score=54.93 Aligned_cols=72 Identities=29% Similarity=0.357 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCCccc------------------------------------------eeeeccCC-ccCCCCcceEEEec
Q 028050 48 PTSSRVLMVGCGNAH------------------------------------------LQMDVRDM-SFFEDESFDAVIDK 84 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~-~~~~~~~fD~V~~~ 84 (214)
+.+.+|||...|-|+ +.+|+.+. ..|.+++||+|+--
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 458899999999998 34454432 33788999999854
Q ss_pred cchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 85 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.-=... .+.-...++-++++|+|||||+++--+-+
T Consensus 213 PPRfS~----AgeLYseefY~El~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 213 PPRFSL----AGELYSEEFYRELYRILKRGGRLFHYVGN 247 (287)
T ss_pred CCccch----hhhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence 322111 12236688999999999999999765443
No 172
>PLN02476 O-methyltransferase
Probab=97.11 E-value=0.00094 Score=55.93 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=28.1
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
++||+|+.-. +......+++.+.+.|+|||++++-
T Consensus 193 ~~FD~VFIDa----------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 193 SSYDFAFVDA----------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCEEEECC----------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 5799888654 2357789999999999999999773
No 173
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.08 E-value=0.0007 Score=53.94 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=34.2
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccC-CcEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP-GGIYMLI 120 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 120 (214)
+-+||+|.|.+.++.- -++.+.++.++.+|.| +|++++.
T Consensus 167 ~~k~dli~clNlLDRc-------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRC-------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred CceeehHHHHHHHHhh-------cChHHHHHHHHHHhccCCCcEEEE
Confidence 4579999999999877 6889999999999999 8988774
No 174
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.06 E-value=0.0012 Score=53.37 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=30.6
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
..++||+|+.-. ++.+..++++.+.+.|+|||++++-
T Consensus 129 ~~~~fDliFIDa----------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 129 LDGSFDLVFIDA----------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cCCCccEEEEeC----------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 458899998643 3467899999999999999999874
No 175
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0011 Score=56.86 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=35.2
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 126 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 126 (214)
....|++|+..+-|-+. .....+..+++.+..++.|||.+++++-+.+.
T Consensus 182 ~ad~ytl~i~~~eLl~d----~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 182 AADLYTLAIVLDELLPD----GNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred ccceeehhhhhhhhccc----cCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 34567777765544333 12235566999999999999999999988664
No 176
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.98 E-value=0.0044 Score=52.99 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=27.7
Q ss_pred ceEEEeccchhhhcCCCCChhHHHHHHHHHHH-hccCCcEEEE
Q 028050 78 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYML 119 (214)
Q Consensus 78 fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~ 119 (214)
..+++..+. ..|...+.....+|+++++ +|+|||.+++
T Consensus 157 ~r~~~flGS----siGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 157 PTTILWLGS----SIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred ccEEEEeCc----cccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 455555441 2233467788999999999 9999999877
No 177
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.96 E-value=0.0026 Score=53.23 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE--cC-Cchhhhhhccc--cccceEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT--YG-DPKARMIHLKW--KVYNWKIELY 144 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~-~~~~~~~~~~~--~~~~~~~~~~ 144 (214)
+...++++.++.++.+ .+..-+...+..+.+++.|||.++.+. +. +.+.....++. ....|.....
T Consensus 207 ~p~P~l~iVsGL~ElF----~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 207 DPAPTLAIVSGLYELF----PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred CCCCCEEEEecchhhC----CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 4468999999998877 222447778999999999999997764 22 22223333433 3346866543
No 178
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.95 E-value=0.0013 Score=52.70 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=28.6
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
+.||+|+.-.. ..+...+++.+.+.|+|||++++-
T Consensus 120 ~~fD~VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 120 GQFDFVFIDAD----------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TSEEEEEEEST----------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEccc----------ccchhhHHHHHhhhccCCeEEEEc
Confidence 57999987543 356788999999999999999774
No 179
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.95 E-value=0.0018 Score=55.16 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=45.5
Q ss_pred HHhhCC-CCCeEEEEcCCccc----------------------------------------eeeeccCCccCCCCcceEE
Q 028050 43 VRKYIP-TSSRVLMVGCGNAH----------------------------------------LQMDVRDMSFFEDESFDAV 81 (214)
Q Consensus 43 l~~~~~-~~~~iLdiGcG~G~----------------------------------------~~~d~~~~~~~~~~~fD~V 81 (214)
+.++.. .+..|||||||+|. +.+.++++. + .++.|+|
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~Dvi 247 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVI 247 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEE
Confidence 334433 56789999999998 445555655 4 3579999
Q ss_pred EeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEE
Q 028050 82 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 118 (214)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 118 (214)
++-.+=..+ .. +.+.+..-.+++.|||.|.++
T Consensus 248 ISEPMG~mL-~N----ERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPMGYML-VN----ERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred Eeccchhhh-hh----HHHHHHHHHHHhhcCCCCccc
Confidence 976543333 22 444455556779999999874
No 180
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.94 E-value=0.002 Score=51.43 Aligned_cols=40 Identities=5% Similarity=0.021 Sum_probs=25.2
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHH--hccCCcEEEEEEc
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSR--LLKPGGIYMLITY 122 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~ 122 (214)
..+||+|++..-+.. .-...+++.+.. +|+|+|++++...
T Consensus 119 ~~~fDlV~~DPPy~~--------g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 119 GTPHNVVFVDPPFRK--------GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCCceEEEECCCCCC--------ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 346999998876421 123445555554 3789888876543
No 181
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.0025 Score=51.40 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=26.9
Q ss_pred ceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 78 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 78 fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
||+|++..+ .....+++-+...+|+||.+++.-
T Consensus 136 ~D~vtsRAv-----------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 136 YDVVTSRAV-----------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred CcEEEeehc-----------cchHHHHHHHHHhcccCCcchhhh
Confidence 999999764 567888888999999999876543
No 182
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.89 E-value=0.003 Score=56.82 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCCcEEEEEEcC
Q 028050 100 ASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 100 ~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..++|.++.+.|||||+++.+|-+
T Consensus 221 Q~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 221 QRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHHHHHHHHHHcCCCcEEEEECCC
Confidence 378999999999999999887755
No 183
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.78 E-value=0.012 Score=47.26 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=33.9
Q ss_pred CCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 73 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
++++.||.|+--..-.+. ++...+.+.+.|+|||+|++-...
T Consensus 165 L~d~~FDGI~yDTy~e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred ccccCcceeEeechhhHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 678889999865443556 899999999999999999986543
No 184
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.71 E-value=0.0074 Score=50.15 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=35.6
Q ss_pred CCCCcceEEEeccchh-------------------hhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 73 FEDESFDAVIDKGTLD-------------------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~-------------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
...+.+|+++++.-+- ++..|..+......++.-+.|.|+|||.+.+...
T Consensus 218 l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 218 LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 4467899999975431 2222234556778888999999999999988654
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.68 E-value=0.0019 Score=58.71 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=30.1
Q ss_pred CCCCcceEEEeccchhhhcCCCCChh---------HHHHHHHHHHHhccCCcEEEEEEc
Q 028050 73 FEDESFDAVIDKGTLDSLMCGTNAPI---------SASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
++++++|.|+.++. +|+. -...+++.++++|||||.+.+.|-
T Consensus 413 ~~~~sv~~i~i~FP--------DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 413 LPNNSLDGIYILFP--------DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred cCcccccEEEEECC--------CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 56677888776432 1221 226899999999999999988774
No 186
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.61 E-value=0.0061 Score=52.16 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=37.9
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+-|+|++..++||+ +.++..++++++...|+|||.+++.+..
T Consensus 236 ~~daI~mkWiLhdw-----tDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 236 KGDAIWMKWILHDW-----TDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred CcCeEEEEeecccC-----ChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 45699999999999 6689999999999999999999998764
No 187
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.55 E-value=0.0093 Score=46.45 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=27.6
Q ss_pred CcceEEEeccchhhhcCCC------CChhHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028050 76 ESFDAVIDKGTLDSLMCGT------NAPISASQMLGEVSRLLKPGGIYMLITYGDP 125 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 125 (214)
..||+|++-.....- |. ....-....+.-+.+.|+|||.+++-.+...
T Consensus 90 ~~~dlv~~D~~~~~~--g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVS--GDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp CSESEEEE---------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred cCcceeccccccCCC--CchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 689999987732111 10 0003445556666788999999988776643
No 188
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.54 E-value=0.0049 Score=55.07 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCCccc---------------------------------------eeeeccCC-cc--CCCCcceEEEecc
Q 028050 48 PTSSRVLMVGCGNAH---------------------------------------LQMDVRDM-SF--FEDESFDAVIDKG 85 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~---------------------------------------~~~d~~~~-~~--~~~~~fD~V~~~~ 85 (214)
.++.+|||+|||+|. .++|+.+. .. +.+++||+|++..
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 467899999999998 34444321 10 3346799998865
Q ss_pred chhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 86 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
... .....+..+.+ ++|+++++++.
T Consensus 376 Pr~----------g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 376 PRA----------GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CCc----------ChHHHHHHHHh-cCCCeEEEEEe
Confidence 432 22355555555 68888776654
No 189
>PLN02823 spermine synthase
Probab=96.50 E-value=0.0052 Score=52.95 Aligned_cols=45 Identities=29% Similarity=0.454 Sum_probs=26.6
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHH-HHHHhccCCcEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLG-EVSRLLKPGGIYMLI 120 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~ 120 (214)
.++||+|+.-. .+....+....-.-..+++ .+.+.|+|||++++-
T Consensus 174 ~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 DEKFDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCCccEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 46899999752 1111000000012346777 899999999998764
No 190
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.47 E-value=0.0072 Score=50.63 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=33.9
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 126 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 126 (214)
..|+|++.++|..+ +.....++++.+.+.+.+ .|++++.+.+.
T Consensus 102 ~~DLvi~s~~L~EL-----~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 102 PDDLVIASYVLNEL-----PSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCcEEEEehhhhcC-----CchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 34999999999888 336778888888887766 88889887654
No 191
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.46 E-value=0.0046 Score=50.99 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=27.4
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
++||+|+.-+. +.....+++.+.+.|+|||++++
T Consensus 155 ~~fD~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CcccEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 57999886543 35678889999999999999876
No 192
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.0097 Score=46.84 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=12.5
Q ss_pred CCCeEEEEcCCccc
Q 028050 49 TSSRVLMVGCGNAH 62 (214)
Q Consensus 49 ~~~~iLdiGcG~G~ 62 (214)
.+.+|+|+|||||.
T Consensus 45 ~g~~V~DlG~GTG~ 58 (198)
T COG2263 45 EGKTVLDLGAGTGI 58 (198)
T ss_pred CCCEEEEcCCCcCH
Confidence 46789999999998
No 193
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.05 E-value=0.009 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=16.8
Q ss_pred hHHHHHhh-C-CCCCeEEEEcCCccc
Q 028050 39 LRPFVRKY-I-PTSSRVLMVGCGNAH 62 (214)
Q Consensus 39 l~~~l~~~-~-~~~~~iLdiGcG~G~ 62 (214)
+..++... + .++.+|||+|||||.
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~ 88 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGG 88 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCH
Confidence 44455532 2 357799999999998
No 194
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.92 E-value=0.014 Score=52.24 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=46.8
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCchhhhhhccccccceEEEEEeeCC
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR 148 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (214)
-+.+||+|.+.+.+... ....++..++-|+-|+|+|||.+++-+...--..+..+ .....|.........
T Consensus 424 YPRTYDLlHA~~lfs~~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i-~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLY----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKI-AKSLRWEVRIHDTED 493 (506)
T ss_pred CCcchhheehhhhhhhh----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHH-HHhCcceEEEEecCC
Confidence 35689999998877654 34568899999999999999999886532211111111 134567766655543
No 195
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.69 E-value=0.017 Score=49.35 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=12.6
Q ss_pred CCCeEEEEcCCccc
Q 028050 49 TSSRVLMVGCGNAH 62 (214)
Q Consensus 49 ~~~~iLdiGcG~G~ 62 (214)
++.+|||+|||+|.
T Consensus 173 ~~~~VLDl~cG~G~ 186 (315)
T PRK03522 173 PPRSMWDLFCGVGG 186 (315)
T ss_pred CCCEEEEccCCCCH
Confidence 46899999999998
No 196
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.65 E-value=0.015 Score=46.71 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=21.4
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
.-|+|++++.... ++....|.++..-||+|-+++.
T Consensus 122 ~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 122 DADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp C-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEE
Confidence 3589999876421 4666777888888999888754
No 197
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.50 E-value=0.052 Score=43.41 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=49.2
Q ss_pred hCCCCCeEEEEcCCccc-------------------------------eeeeccCCcc-------CCCCcceEEEeccch
Q 028050 46 YIPTSSRVLMVGCGNAH-------------------------------LQMDVRDMSF-------FEDESFDAVIDKGTL 87 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~-------------------------------~~~d~~~~~~-------~~~~~fD~V~~~~~l 87 (214)
.+.++.+|+|+|+-+|. +++|+++-.. +....+|+|++-..-
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCC
Confidence 46789999999999997 5566654321 234457999964432
Q ss_pred --------hhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 88 --------DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 88 --------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+|.. .-.-...++.-+.++|+|||.+++-.+.
T Consensus 122 ~~~g~~~~Dh~r----~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 122 NTSGNRSVDHAR----SMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CcCCCccccHHH----HHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 2221 0123456677778899999999886654
No 198
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.41 E-value=0.024 Score=46.91 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.1
Q ss_pred CCCCCeEEEEcCCccc
Q 028050 47 IPTSSRVLMVGCGNAH 62 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~ 62 (214)
+.++.+|||||||+|.
T Consensus 27 ~~~~~~VLEIG~G~G~ 42 (258)
T PRK14896 27 DTDGDPVLEIGPGKGA 42 (258)
T ss_pred CCCcCeEEEEeCccCH
Confidence 4577899999999998
No 199
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.38 E-value=0.06 Score=44.38 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.8
Q ss_pred CCCCCeEEEEcCCccc
Q 028050 47 IPTSSRVLMVGCGNAH 62 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~ 62 (214)
..++.+|||||||+|.
T Consensus 27 ~~~~~~VLEiG~G~G~ 42 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGA 42 (253)
T ss_pred CCCcCEEEEeCCCCCH
Confidence 3467899999999998
No 200
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.15 E-value=0.027 Score=50.09 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=13.2
Q ss_pred CCCCeEEEEcCCccc
Q 028050 48 PTSSRVLMVGCGNAH 62 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~ 62 (214)
.++.+|||+|||+|.
T Consensus 291 ~~~~~vLDl~cG~G~ 305 (431)
T TIGR00479 291 QGEELVVDAYCGVGT 305 (431)
T ss_pred CCCCEEEEcCCCcCH
Confidence 456799999999998
No 201
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=95.02 E-value=0.041 Score=48.16 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=12.5
Q ss_pred CCCeEEEEcCCccc
Q 028050 49 TSSRVLMVGCGNAH 62 (214)
Q Consensus 49 ~~~~iLdiGcG~G~ 62 (214)
++.+|||++||+|.
T Consensus 233 ~~~~vLDL~cG~G~ 246 (374)
T TIGR02085 233 PVTQMWDLFCGVGG 246 (374)
T ss_pred CCCEEEEccCCccH
Confidence 46799999999997
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.95 E-value=0.047 Score=45.94 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=29.0
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.+||+|+.-.+=. . |....-.-..+.+.+++.|+++|+++.-
T Consensus 148 ~~fDvIi~D~tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 3799998754321 1 2111123478999999999999999886
No 203
>PRK04148 hypothetical protein; Provisional
Probab=94.94 E-value=0.076 Score=39.61 Aligned_cols=74 Identities=8% Similarity=0.142 Sum_probs=42.3
Q ss_pred hHHHHHhhCC--CCCeEEEEcCCccc---------------------------------eeeeccCCccCCCCcceEEEe
Q 028050 39 LRPFVRKYIP--TSSRVLMVGCGNAH---------------------------------LQMDVRDMSFFEDESFDAVID 83 (214)
Q Consensus 39 l~~~l~~~~~--~~~~iLdiGcG~G~---------------------------------~~~d~~~~~~~~~~~fD~V~~ 83 (214)
+.+++..+++ .+.+|||||||+|. ++.|+.+...-.-+.+|+|.+
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence 4455555443 35789999999995 344444332111245777776
Q ss_pred ccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 84 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
.. ++.++...+.++++.+ |.-+++.+++.
T Consensus 84 ir----------pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 84 IR----------PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred eC----------CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 43 3356666666666644 44566666543
No 204
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.94 E-value=0.016 Score=45.65 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHH--HhccCCcEEEEEEc
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLITY 122 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 122 (214)
...+||+|++..-+..- ....+++..+. .+|+++|++++-..
T Consensus 111 ~~~~fDiIflDPPY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 111 KGEKFDIIFLDPPYAKG-------LYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp CTS-EEEEEE--STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cCCCceEEEECCCcccc-------hHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 46789999988766433 22477788777 78999998877553
No 205
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.90 E-value=0.035 Score=48.81 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=54.3
Q ss_pred chHHHHHhhCCCCCeEEEEcCCccc------------------------------------------eeeeccCCcc---
Q 028050 38 ALRPFVRKYIPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSF--- 72 (214)
Q Consensus 38 ~l~~~l~~~~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~--- 72 (214)
..+..+..... |.+||++=|=||. +++|+.+.-.
T Consensus 207 ~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 207 DNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred HHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 34556666667 9999999998886 3444432210
Q ss_pred CCCCcceEEEeccc---------hhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 73 FEDESFDAVIDKGT---------LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 73 ~~~~~fD~V~~~~~---------l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
-...+||+|+.-.- +... .+...++..+.++|+|||.+++.+-.
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~-------rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQ-------RDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHH-------HHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 12358999997432 2222 57889999999999999999887744
No 206
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=94.87 E-value=0.065 Score=42.31 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=12.8
Q ss_pred CCCeEEEEcCCccc
Q 028050 49 TSSRVLMVGCGNAH 62 (214)
Q Consensus 49 ~~~~iLdiGcG~G~ 62 (214)
++.++||++||+|.
T Consensus 49 ~g~~vLDLfaGsG~ 62 (189)
T TIGR00095 49 QGAHLLDVFAGSGL 62 (189)
T ss_pred CCCEEEEecCCCcH
Confidence 47899999999997
No 207
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.86 E-value=0.11 Score=44.77 Aligned_cols=52 Identities=25% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCCCcceEEEeccchhhhcCCC---C------------------Ch-----------hHHHHHHHHHHHhccCCcEEEEE
Q 028050 73 FEDESFDAVIDKGTLDSLMCGT---N------------------AP-----------ISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~~~---~------------------~~-----------~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
+|+++.|++++..++|.+..-. . +. .|...+|+.=++-|+|||+++++
T Consensus 103 fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 182 (334)
T PF03492_consen 103 FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRMVLT 182 (334)
T ss_dssp S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEEEEE
Confidence 7889999999999998765221 1 11 35567777788889999999997
Q ss_pred EcCC
Q 028050 121 TYGD 124 (214)
Q Consensus 121 ~~~~ 124 (214)
..+.
T Consensus 183 ~~gr 186 (334)
T PF03492_consen 183 FLGR 186 (334)
T ss_dssp EEE-
T ss_pred Eeec
Confidence 7653
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=94.70 E-value=0.1 Score=44.12 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=27.5
Q ss_pred CCcceEEEeccchhhh-c-----CCC--------CChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSL-M-----CGT--------NAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~-~-----~~~--------~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
...||+|+++.-+... . ... .....-..++..+.+.|++||++.++.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 4689999998765433 0 000 001122358899999999999977754
No 209
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.69 E-value=0.042 Score=39.41 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=30.4
Q ss_pred cceEEEeccchh--hhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 77 SFDAVIDKGTLD--SLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 77 ~fD~V~~~~~l~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.||+|+|..+.- |+-.| .+.+..+++.+++.|+|||++++-
T Consensus 1 ~yDvilclSVtkWIHLn~G---D~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWG---DEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHH---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCc---CHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999977653 33222 256789999999999999999774
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=94.68 E-value=0.13 Score=42.76 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=26.4
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.++||+|+.-.. ....+.+.+.+.|+|||+++.-
T Consensus 137 ~~~fDVIIvDs~------------~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 137 IKKYDLIICLQE------------PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCcCCEEEEcCC------------CChHHHHHHHHhcCCCcEEEEC
Confidence 368999997532 2256778999999999999773
No 211
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.64 E-value=0.026 Score=47.10 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=14.0
Q ss_pred CCCCCeEEEEcCCccc
Q 028050 47 IPTSSRVLMVGCGNAH 62 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~ 62 (214)
+.++.+|||||||+|.
T Consensus 40 ~~~~~~VLEiG~G~G~ 55 (272)
T PRK00274 40 PQPGDNVLEIGPGLGA 55 (272)
T ss_pred CCCcCeEEEeCCCccH
Confidence 4567899999999998
No 212
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.63 E-value=0.03 Score=44.74 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=41.9
Q ss_pred HHHHhhCCCCCeEEEEcCCccc------------------------------------------eeeeccCCccCCCCcc
Q 028050 41 PFVRKYIPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFFEDESF 78 (214)
Q Consensus 41 ~~l~~~~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~~~~~f 78 (214)
..+.+.+.++.+|||+-||-|. .++|..++. ....|
T Consensus 93 ~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~~ 170 (200)
T PF02475_consen 93 RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGKF 170 (200)
T ss_dssp HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-E
T ss_pred HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--Ccccc
Confidence 3455568889999999999998 567776665 37789
Q ss_pred eEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEE
Q 028050 79 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 118 (214)
Q Consensus 79 D~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 118 (214)
|-|++...- ....++..+.+++++||++.
T Consensus 171 drvim~lp~-----------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPE-----------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TS-----------SGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChH-----------HHHHHHHHHHHHhcCCcEEE
Confidence 999886432 23458888999999999874
No 213
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.63 E-value=0.13 Score=45.08 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=37.6
Q ss_pred CCCCcceEEEeccchhhhcCCCC--------------------Ch-----------hHHHHHHHHHHHhccCCcEEEEEE
Q 028050 73 FEDESFDAVIDKGTLDSLMCGTN--------------------AP-----------ISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~~~~--------------------~~-----------~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
||.++.+++++..++|.+.--.. .+ .|...+|+.=++-|.|||+++++.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 67889999999999987642111 00 245667777788899999999987
Q ss_pred cCC
Q 028050 122 YGD 124 (214)
Q Consensus 122 ~~~ 124 (214)
.+.
T Consensus 238 ~Gr 240 (386)
T PLN02668 238 LGR 240 (386)
T ss_pred ecC
Confidence 654
No 214
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=94.48 E-value=0.059 Score=46.18 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.8
Q ss_pred CCCeEEEEcCCccc
Q 028050 49 TSSRVLMVGCGNAH 62 (214)
Q Consensus 49 ~~~~iLdiGcG~G~ 62 (214)
++.+|||||||+|.
T Consensus 114 ~~~~vLDIGtGag~ 127 (321)
T PRK11727 114 ANVRVLDIGVGANC 127 (321)
T ss_pred CCceEEEecCCccH
Confidence 45699999999984
No 215
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.47 E-value=0.15 Score=40.31 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=46.0
Q ss_pred hCCCCCeEEEEcCCccc-------------------------------eee-eccCCc-------cCCCCcceEEEeccc
Q 028050 46 YIPTSSRVLMVGCGNAH-------------------------------LQM-DVRDMS-------FFEDESFDAVIDKGT 86 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~-------------------------------~~~-d~~~~~-------~~~~~~fD~V~~~~~ 86 (214)
.++|+.+|||+||.+|. +++ |+++.. ..++...|+|++-..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMa 145 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMA 145 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccC
Confidence 46799999999999998 222 444321 145678999987432
Q ss_pred hhhhcCCCCChhHHHH-------HHHHHHHhccCCcEEEEEEcCCc
Q 028050 87 LDSLMCGTNAPISASQ-------MLGEVSRLLKPGGIYMLITYGDP 125 (214)
Q Consensus 87 l~~~~~~~~~~~~~~~-------~l~~~~~~LkpgG~l~~~~~~~~ 125 (214)
-. .+|. .--|... ++.-....++|+|.+++-.+...
T Consensus 146 pn--aTGv-r~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 146 PN--ATGV-RIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CC--CcCc-chhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 11 1111 1112333 33334456789999999777643
No 216
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.47 E-value=0.32 Score=38.67 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=44.7
Q ss_pred hHHHHHhhCC--CCCeEEEEcCCccc----------------------------------eeee--ccCCccCCCCcceE
Q 028050 39 LRPFVRKYIP--TSSRVLMVGCGNAH----------------------------------LQMD--VRDMSFFEDESFDA 80 (214)
Q Consensus 39 l~~~l~~~~~--~~~~iLdiGcG~G~----------------------------------~~~d--~~~~~~~~~~~fD~ 80 (214)
+.+.+..+.+ .+.+|||+|+|+|. +... -.+.- ..+..||+
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~-g~~~~~Dl 145 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLI-GSPPAFDL 145 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecccc-CCCcceeE
Confidence 3444443333 58899999999998 1111 11222 35678999
Q ss_pred EEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 81 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 81 V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
|+...++..= ....+.+. ..+.|+..|..++
T Consensus 146 ~LagDlfy~~-------~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 146 LLAGDLFYNH-------TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred EEeeceecCc-------hHHHHHHH-HHHHHHhCCCEEE
Confidence 9998876533 56677777 5555665555444
No 217
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.29 E-value=0.26 Score=42.87 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 99 SASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 99 ~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
-..++|..+.+.|||||.|+.+|-+
T Consensus 266 lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 266 LQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccC
Confidence 4578999999999999999998754
No 218
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.16 E-value=0.22 Score=40.29 Aligned_cols=81 Identities=25% Similarity=0.335 Sum_probs=48.5
Q ss_pred ccccccchHHHHHh-----hCCCCCeEEEEcCCccc----------------------------------------eeee
Q 028050 32 WYQRYSALRPFVRK-----YIPTSSRVLMVGCGNAH----------------------------------------LQMD 66 (214)
Q Consensus 32 w~~~~~~l~~~l~~-----~~~~~~~iLdiGcG~G~----------------------------------------~~~d 66 (214)
|-.....|...+.+ .+.++.+||-+|+.+|. +..|
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D 130 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED 130 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc
Confidence 44444456655532 45689999999999997 4555
Q ss_pred ccCCccC--CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 67 VRDMSFF--EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 67 ~~~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+.....+ .-+..|+|++--. .+....-++.++...||+||.++++-
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVa---------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVA---------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-S---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCC---------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 5532211 1247898886421 22466677888889999999998753
No 219
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.98 E-value=0.062 Score=44.26 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=27.2
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+||+|+.-..- -. +....---..+++.+.++|+|||++++-.
T Consensus 150 ~yDvIi~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 150 KYDVIIVDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -EEEEEEESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEEeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 89999864321 11 00000124789999999999999998854
No 220
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.84 E-value=0.038 Score=41.81 Aligned_cols=39 Identities=23% Similarity=0.485 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCccc---------------------------------------eeeeccCCccCCCCcceEEEeccchh
Q 028050 49 TSSRVLMVGCGNAH---------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLD 88 (214)
Q Consensus 49 ~~~~iLdiGcG~G~---------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~ 88 (214)
.|.+++|+|||.|. +++|+.++. +..+.||.++.+.-+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCCC
Confidence 58899999999997 777887776 6678999999887654
No 221
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.48 E-value=0.09 Score=41.13 Aligned_cols=56 Identities=29% Similarity=0.412 Sum_probs=31.5
Q ss_pred eeeccCCccCCCCcceEEEeccchhhhcCC-CCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 64 QMDVRDMSFFEDESFDAVIDKGTLDSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 64 ~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+.|+.+++ +.++++|+|+++.-+..-... .....-..++++++.++|++ ..+++++
T Consensus 94 ~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 94 QWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp E--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred ecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 34556666 667899999998765422110 00113346778999999999 4443443
No 222
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=93.32 E-value=0.097 Score=45.97 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
...||+|+... + -....++..+.+.+++||++.++
T Consensus 123 ~~~fD~V~lDP-~----------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 123 ERKFDVVDIDP-F----------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred cCCCCEEEECC-C----------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 35699988753 1 12356788877888999999886
No 223
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=93.05 E-value=0.11 Score=44.02 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.5
Q ss_pred hCCCCCeEEEEcCCccc
Q 028050 46 YIPTSSRVLMVGCGNAH 62 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~ 62 (214)
.+.++.+|||||||+|.
T Consensus 33 ~~~~~~~VLEIG~G~G~ 49 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGN 49 (294)
T ss_pred CCCCcCEEEEecCchHH
Confidence 34577899999999998
No 224
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.93 E-value=0.057 Score=45.09 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=23.6
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHH-HHHHHHhccCCcEEEEE
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~~ 120 (214)
.||+|.++.++... ...+.. .......++++|+++++
T Consensus 196 ~ydlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 196 HYDLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred chhhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhh
Confidence 56666666666544 344444 66667777888887664
No 225
>PRK11524 putative methyltransferase; Provisional
Probab=92.70 E-value=0.16 Score=42.73 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=36.6
Q ss_pred eeeeccCC-ccCCCCcceEEEeccchhhh-----cCCCCCh----hHHHHHHHHHHHhccCCcEEEEEE
Q 028050 63 LQMDVRDM-SFFEDESFDAVIDKGTLDSL-----MCGTNAP----ISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 63 ~~~d~~~~-~~~~~~~fD~V~~~~~l~~~-----~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
+++|..+. ..+++++||+|++..-+... ..+.... .-....+.++.|+|||||.+++..
T Consensus 12 ~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 12 IHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34565542 22677899999997654210 0000000 223578999999999999998753
No 226
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.62 E-value=0.27 Score=39.38 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=18.2
Q ss_pred HHHHHHHHHhccCCcEEEEEE
Q 028050 101 SQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 101 ~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..++.+..-+|++||.++.++
T Consensus 163 ~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEe
Confidence 567889999999999998876
No 227
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=92.12 E-value=0.7 Score=42.24 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=15.4
Q ss_pred HHHHHHhccCCcEEEEEEc
Q 028050 104 LGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 104 l~~~~~~LkpgG~l~~~~~ 122 (214)
++.+.+.|++||++.++..
T Consensus 179 ~~~~~~lL~~~G~~~~I~P 197 (524)
T TIGR02987 179 EEISLEIANKNGYVSIISP 197 (524)
T ss_pred HHHHHHhcCCCCEEEEEEC
Confidence 3568899999999988753
No 228
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.06 E-value=0.29 Score=37.79 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=36.1
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
....||+|++..++..- +...++++.|.++|+|.|..++.+.-
T Consensus 100 eq~tFDiIlaADClFfd-------E~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD-------EHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred hhCcccEEEeccchhHH-------HHHHHHHHHHHHHhCcccceeEecCc
Confidence 34589999999988766 88999999999999999997666543
No 229
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.81 E-value=0.14 Score=39.33 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=35.1
Q ss_pred CCcceEEEeccchhhhcCCC----CChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.++||.+.+.++++|+=-|. -++..-.+.+.++.++|||||.|++..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 46899999999999874331 122233567888999999999998853
No 230
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.43 E-value=0.68 Score=37.66 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=29.6
Q ss_pred CCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 73 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.+.++||.++.-+. ..+...+..++.+.||+||++++-
T Consensus 145 ~~~~tfDfaFvDad----------K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 145 GESGTFDFAFVDAD----------KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCCCceeEEEEccc----------hHHHHHHHHHHHhhcccccEEEEe
Confidence 34678999986432 345569999999999999999773
No 231
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.21 E-value=0.4 Score=39.54 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=31.1
Q ss_pred ceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 78 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 78 fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
||+|++..++..- +....++..++..|-.+|.+++.+.
T Consensus 163 ~DlilasDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999999988766 6778888889999999996666553
No 232
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=91.14 E-value=0.43 Score=40.27 Aligned_cols=88 Identities=24% Similarity=0.286 Sum_probs=50.1
Q ss_pred cccccchHHHHHhhCCCCCeEEEEcCCccc------------------------------------------eeeeccCC
Q 028050 33 YQRYSALRPFVRKYIPTSSRVLMVGCGNAH------------------------------------------LQMDVRDM 70 (214)
Q Consensus 33 ~~~~~~l~~~l~~~~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~ 70 (214)
|-.....+.++.... .+.+|||+=|=||. ++.|+.+.
T Consensus 108 FlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~ 186 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF 186 (286)
T ss_dssp -GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH
T ss_pred cHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH
Confidence 333344555666554 48899999998886 33444321
Q ss_pred -ccC-CCCcceEEEeccchhhhcCCCC-ChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 71 -SFF-EDESFDAVIDKGTLDSLMCGTN-APISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 71 -~~~-~~~~fD~V~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
... ..++||+|++-.--. .-+.. -..+..+++..+.++|+|||.+++.+.+
T Consensus 187 l~~~~~~~~fD~IIlDPPsF--~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 187 LKRLKKGGRFDLIILDPPSF--AKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp HHHHHHTT-EEEEEE--SSE--ESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred HHHHhcCCCCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 101 246899999743211 01100 0147788999999999999998776644
No 233
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.82 E-value=0.29 Score=40.84 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.1
Q ss_pred hhCCCCCeEEEEcCCccc
Q 028050 45 KYIPTSSRVLMVGCGNAH 62 (214)
Q Consensus 45 ~~~~~~~~iLdiGcG~G~ 62 (214)
..++++..|||||.|||.
T Consensus 54 a~~k~tD~VLEvGPGTGn 71 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGN 71 (315)
T ss_pred cCCCCCCEEEEeCCCCCH
Confidence 467889999999999998
No 234
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=90.56 E-value=0.42 Score=39.71 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=20.4
Q ss_pred cccccchHHHHHh-hCCCCCeEEEEcCCccc
Q 028050 33 YQRYSALRPFVRK-YIPTSSRVLMVGCGNAH 62 (214)
Q Consensus 33 ~~~~~~l~~~l~~-~~~~~~~iLdiGcG~G~ 62 (214)
+.+..-+..++.. .+.++..|||||+|.|.
T Consensus 13 L~d~~v~~kIv~~a~~~~~d~VlEIGpG~Ga 43 (259)
T COG0030 13 LIDKNVIDKIVEAANISPGDNVLEIGPGLGA 43 (259)
T ss_pred ccCHHHHHHHHHhcCCCCCCeEEEECCCCCH
Confidence 3343345555553 35567899999999998
No 235
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=90.29 E-value=0.56 Score=36.99 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=25.2
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHH--HHHhccCCcEEEEEEc
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGE--VSRLLKPGGIYMLITY 122 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~ 122 (214)
.||+|+.-.-+..- .-+....+.. -..+|+|+|.+++-..
T Consensus 114 ~FDlVflDPPy~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 114 PFDLVFLDPPYAKG------LLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred cccEEEeCCCCccc------hhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 49999987766511 1222333333 4577999999977653
No 236
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=90.27 E-value=0.73 Score=38.55 Aligned_cols=63 Identities=25% Similarity=0.279 Sum_probs=44.4
Q ss_pred hCCCCCeEEEEcCCccc-------------------------------------------eeeeccCCccC--CCCcceE
Q 028050 46 YIPTSSRVLMVGCGNAH-------------------------------------------LQMDVRDMSFF--EDESFDA 80 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~-------------------------------------------~~~d~~~~~~~--~~~~fD~ 80 (214)
.+.||.+|||-|+|+|. .+-|+.... | .+..+|+
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G-F~~ks~~aDa 180 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG-FLIKSLKADA 180 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC-ccccccccce
Confidence 46799999999999998 344444433 3 2467888
Q ss_pred EEeccchhhhcCCCCChhHHHHHHHHHHHhccCCc-EEEEEE
Q 028050 81 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG-IYMLIT 121 (214)
Q Consensus 81 V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~ 121 (214)
|+.- + ..+-.++..+..+||.+| +++..+
T Consensus 181 VFLD-----l-------PaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 181 VFLD-----L-------PAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred EEEc-----C-------CChhhhhhhhHHHhhhcCceEEecc
Confidence 8642 2 567778888888999876 555544
No 237
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=89.88 E-value=0.75 Score=38.33 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=30.6
Q ss_pred EEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 80 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 80 ~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.|+...++|++ .+.+++..+++.+...|.||..|+++-.+
T Consensus 153 avll~~vLh~v----~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 153 AVLLVAVLHFV----PDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred eeeeeeeeccC----CCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 78888999988 23368999999999999999999887654
No 238
>PRK13699 putative methylase; Provisional
Probab=89.66 E-value=0.48 Score=38.52 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=32.4
Q ss_pred cCCCCcceEEEeccchhhhc---CC-----CCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 72 FFEDESFDAVIDKGTLDSLM---CG-----TNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 72 ~~~~~~fD~V~~~~~l~~~~---~~-----~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.++++++|+|+...-+.--. .+ ....+-....+.++.|+|||||.+++.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 37889999999876542100 00 001123468899999999999988764
No 239
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=89.42 E-value=0.87 Score=39.40 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCCCCeEEEEcCCccc--------------------------------eeeeccCCccCCCCcceEEEeccchhhhcCCC
Q 028050 47 IPTSSRVLMVGCGNAH--------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 94 (214)
Q Consensus 47 ~~~~~~iLdiGcG~G~--------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~ 94 (214)
+.++.++|||||++|- ...|..... -+.+.+|+|+|-.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmv-------- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFR-PPRKNVDWLVCDMV-------- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccC-CCCCCCCEEEEecc--------
Confidence 4578999999999997 111211111 01567899987543
Q ss_pred CChhHHHHHHHHHHHhccCC
Q 028050 95 NAPISASQMLGEVSRLLKPG 114 (214)
Q Consensus 95 ~~~~~~~~~l~~~~~~Lkpg 114 (214)
+.+..+.+-+.+.|..|
T Consensus 280 ---e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---cCHHHHHHHHHHHHhcC
Confidence 56778888888888766
No 240
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=89.26 E-value=0.4 Score=40.35 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhc----cCCcEEEEEEcC
Q 028050 99 SASQMLGEVSRLL----KPGGIYMLITYG 123 (214)
Q Consensus 99 ~~~~~l~~~~~~L----kpgG~l~~~~~~ 123 (214)
-..++|+++.+.+ ||||+++.+|-+
T Consensus 193 ~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 193 LQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp HHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 3478999999999 999999998754
No 241
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=89.17 E-value=1.4 Score=36.66 Aligned_cols=110 Identities=24% Similarity=0.324 Sum_probs=49.5
Q ss_pred chHHHHHh---hCCCCCeEEEEcCCccc----------------------------------eeeeccCCccCCCCcceE
Q 028050 38 ALRPFVRK---YIPTSSRVLMVGCGNAH----------------------------------LQMDVRDMSFFEDESFDA 80 (214)
Q Consensus 38 ~l~~~l~~---~~~~~~~iLdiGcG~G~----------------------------------~~~d~~~~~~~~~~~fD~ 80 (214)
.+...+.. .+|..++||.+|+|+-. ..+|..... ++.+||+
T Consensus 47 QLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~--~~~k~Dl 124 (299)
T PF06460_consen 47 QLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYM--PPDKFDL 124 (299)
T ss_dssp HHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEE--ESS-EEE
T ss_pred HHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccC--CCCcccE
Confidence 34444433 25678999999999754 233333332 4678999
Q ss_pred EEeccchhhh--cC-CC-CChh-HHHHHHHHHHHhccCCcEEEE-EEcCCchhhhhhccccccceEEEEEeeCCCC
Q 028050 81 VIDKGTLDSL--MC-GT-NAPI-SASQMLGEVSRLLKPGGIYML-ITYGDPKARMIHLKWKVYNWKIELYIIARPG 150 (214)
Q Consensus 81 V~~~~~l~~~--~~-~~-~~~~-~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (214)
|++-.- +.- .+ +. ...+ --.-+..-+...|+-||.+++ +|-......+-.+.+....|.+.-..+....
T Consensus 125 IiSDmY-d~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F~~wt~FcT~VNtSS 199 (299)
T PF06460_consen 125 IISDMY-DGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYFSWWTCFCTAVNTSS 199 (299)
T ss_dssp EEE-----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEEEEEEGGGTTS
T ss_pred EEEecc-cccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhcccEEEEecccCccc
Confidence 997421 100 01 10 0111 223455667888999999987 2211212222233344455666555555433
No 242
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.03 E-value=0.88 Score=39.98 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=42.2
Q ss_pred CCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028050 73 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 125 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 125 (214)
.+++++|.++.+...+.+ +.+...+.++++.+.++|||+++.-+...+
T Consensus 291 ~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 457899999999999988 778999999999999999999999876543
No 243
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=88.51 E-value=0.76 Score=37.88 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=35.1
Q ss_pred hhCCCCCeEEEEcCCccceeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 45 KYIPTSSRVLMVGCGNAHLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 45 ~~~~~~~~iLdiGcG~G~~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..+++..+|+|||||. +-..++ +-...-++.+...-++ ...-+++..+...|++.+...+.+..
T Consensus 101 ~~~~~p~sVlDigCGl-----NPlalp-~~~~~~~a~Y~a~DID---------~~~ve~l~~~l~~l~~~~~~~v~Dl~ 164 (251)
T PF07091_consen 101 GRIPPPDSVLDIGCGL-----NPLALP-WMPEAPGATYIAYDID---------SQLVEFLNAFLAVLGVPHDARVRDLL 164 (251)
T ss_dssp CCS---SEEEEET-TT-----CHHHHH-TTTSSTT-EEEEEESB---------HHHHHHHHHHHHHTT-CEEEEEE-TT
T ss_pred hcCCCCchhhhhhccC-----Cceehh-hcccCCCcEEEEEeCC---------HHHHHHHHHHHHhhCCCcceeEeeee
Confidence 3456688999999995 222223 2222222222221122 46788999999999999999887653
No 244
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=87.76 E-value=0.51 Score=41.34 Aligned_cols=34 Identities=6% Similarity=0.142 Sum_probs=26.3
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
.+||+|.... + ..+..++..+.+.+++||++.++
T Consensus 113 ~~fDvIdlDP-f----------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 113 RKFHVIDIDP-F----------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCCEEEeCC-C----------CCcHHHHHHHHHhcccCCEEEEE
Confidence 5699887644 2 23457999999999999999886
No 245
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.50 E-value=1.7 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=16.2
Q ss_pred hhCCCCCeEEEEcCCccc
Q 028050 45 KYIPTSSRVLMVGCGNAH 62 (214)
Q Consensus 45 ~~~~~~~~iLdiGcG~G~ 62 (214)
-+++|+.+||-+|+++|.
T Consensus 152 ihikpGsKVLYLGAasGt 169 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGT 169 (317)
T ss_pred eeecCCceEEEeeccCCc
Confidence 367899999999999998
No 246
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=87.44 E-value=1.4 Score=38.02 Aligned_cols=73 Identities=25% Similarity=0.208 Sum_probs=55.7
Q ss_pred HHHHhhCCCCCeEEEEcCCccc-----------------------------------------eeeeccCCccCCCCcce
Q 028050 41 PFVRKYIPTSSRVLMVGCGNAH-----------------------------------------LQMDVRDMSFFEDESFD 79 (214)
Q Consensus 41 ~~l~~~~~~~~~iLdiGcG~G~-----------------------------------------~~~d~~~~~~~~~~~fD 79 (214)
..+.....+|.+|||.=||-|. +++|..... ..-..+|
T Consensus 180 ~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~aD 258 (341)
T COG2520 180 ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGVAD 258 (341)
T ss_pred HHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hccccCC
Confidence 3455677789999999999998 566766665 3336799
Q ss_pred EEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028050 80 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 125 (214)
Q Consensus 80 ~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 125 (214)
-|++... ....+++..+.+.+++||++.+-++.+.
T Consensus 259 rIim~~p-----------~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 259 RIIMGLP-----------KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred EEEeCCC-----------CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 9988653 3457788889999999999988776543
No 247
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=87.27 E-value=2.1 Score=30.23 Aligned_cols=40 Identities=40% Similarity=0.507 Sum_probs=30.0
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..||++......++. .....+.++.++|+|+|.+++....
T Consensus 118 ~~~d~~~~~~~~~~~--------~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 118 ASFDLVISLLVLHLL--------PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CceeEEeeeeehhcC--------CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 378988444433333 2789999999999999999887765
No 248
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.08 E-value=2 Score=35.21 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=26.6
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
..|++++--++- ....++..+..+++++|.++..
T Consensus 144 ~~d~~v~DvSFI----------SL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 144 KPDLIVIDVSFI----------SLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred CCCeEEEEeehh----------hHHHHHHHHHHhcCCCceEEEE
Confidence 567888765553 4588999999999999987664
No 249
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=86.07 E-value=2 Score=37.32 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhccCCcEEEEEEcC
Q 028050 100 ASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 100 ~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.-.++....+.||+||+++-+|-+
T Consensus 275 Q~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 275 QLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccC
Confidence 457899999999999999998754
No 250
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=85.62 E-value=2.3 Score=40.49 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=25.6
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHh---ccCCcEEEEEEcC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL---LKPGGIYMLITYG 123 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~ 123 (214)
++||+|+++.-+..-+ + ...+...+...+.+. ..+|+.+++++..
T Consensus 302 ~~~d~IvtNPPYg~r~-~--~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 302 GPTGLVISNPPYGERL-G--EEPALIALYSQLGRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred CCCCEEEECCCCcCcc-C--chHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4699999987654221 1 112334444444444 4489988877653
No 251
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=85.00 E-value=1.6 Score=38.68 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 99 SASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 99 ~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
-..++|..+...+++||+|+.+|-+
T Consensus 349 LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 349 LQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred HHHHHHHHHHhhccCCcEEEEEeee
Confidence 3478889999999999999987754
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=84.44 E-value=2.1 Score=35.94 Aligned_cols=51 Identities=16% Similarity=0.382 Sum_probs=28.7
Q ss_pred eeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 64 QMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 64 ~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+|..+.. ..-..||+|+...... + ..++..+++.++.+.++||.++++-+
T Consensus 180 ~~d~~~~~-~dl~~~DvV~lAalVg-~-----~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 180 TADVLDVT-YDLKEYDVVFLAALVG-M-----DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp ES-GGGG--GG----SEEEE-TT-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred ecchhccc-cccccCCEEEEhhhcc-c-----ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 34444443 3335799988765432 1 23578999999999999999998864
No 253
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=84.05 E-value=0.6 Score=33.44 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=12.0
Q ss_pred CCCeEEEEcCCccc
Q 028050 49 TSSRVLMVGCGNAH 62 (214)
Q Consensus 49 ~~~~iLdiGcG~G~ 62 (214)
+.....|||||+|.
T Consensus 58 ~~~~FVDlGCGNGL 71 (112)
T PF07757_consen 58 KFQGFVDLGCGNGL 71 (112)
T ss_pred CCCceEEccCCchH
Confidence 35589999999998
No 254
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=82.97 E-value=1.8 Score=36.92 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028050 98 ISASQMLGEVSRLLKPGGIYMLITYGDPKA 127 (214)
Q Consensus 98 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 127 (214)
..+..+|..+..+|+|||++++++|.....
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 567899999999999999999999876544
No 255
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=82.80 E-value=2.1 Score=36.37 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028050 98 ISASQMLGEVSRLLKPGGIYMLITYGDPKAR 128 (214)
Q Consensus 98 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 128 (214)
.....+|..+.++|+|||++++++|.....+
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDR 251 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLEDR 251 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHHH
Confidence 6779999999999999999999998765443
No 256
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.75 E-value=2.5 Score=36.58 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=25.3
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.||+|+..- . ...+....+.|++||.++++..-
T Consensus 229 ~~d~ii~tv-------------~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTV-------------G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECC-------------C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 388887642 2 55677888999999999998754
No 257
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=82.32 E-value=4.5 Score=31.21 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=38.8
Q ss_pred eeeeccCCcc---CCCCcceEEEeccchhhhcCCC--------CChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 63 LQMDVRDMSF---FEDESFDAVIDKGTLDSLMCGT--------NAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 63 ~~~d~~~~~~---~~~~~fD~V~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
...|++++.. .....||.|+-++--.. .+. ....-+..++..+.++|+++|.+.++-..
T Consensus 58 ~~VDat~l~~~~~~~~~~FDrIiFNFPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 58 HGVDATKLHKHFRLKNQRFDRIIFNFPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred cCCCCCcccccccccCCcCCEEEEeCCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4466666653 24688999998765221 000 11235578999999999999999776543
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.29 E-value=4.5 Score=32.49 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=49.0
Q ss_pred cccccccchHHHHHh-----hCCCCCeEEEEcCCccc---------------------------------------eeee
Q 028050 31 DWYQRYSALRPFVRK-----YIPTSSRVLMVGCGNAH---------------------------------------LQMD 66 (214)
Q Consensus 31 ew~~~~~~l~~~l~~-----~~~~~~~iLdiGcG~G~---------------------------------------~~~d 66 (214)
+|-.....+...+.+ .++++.+||=+|+-+|. +..|
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D 132 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED 132 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc
Confidence 455555555554432 34689999999999997 3333
Q ss_pred ccCCcc--CCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 67 VRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 67 ~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
+..... .--+..|+|+.- + ..+....=+..++...||+||.++++
T Consensus 133 A~~P~~Y~~~Ve~VDviy~D-----V----AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQD-----V----AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cCCcHHhhhhcccccEEEEe-----c----CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 322111 111346666542 1 23345666778899999999977664
No 259
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=81.67 E-value=7.1 Score=31.23 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=34.7
Q ss_pred ceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCchhhhhhccccccceEE
Q 028050 78 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKI 141 (214)
Q Consensus 78 fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 141 (214)
.|.|+..++ +.....++++.....++..-.|++-..+.......++... +|.+
T Consensus 67 ~d~ivIAGM---------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~--gf~I 119 (205)
T PF04816_consen 67 VDTIVIAGM---------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYEN--GFEI 119 (205)
T ss_dssp --EEEEEEE----------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHT--TEEE
T ss_pred CCEEEEecC---------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHC--CCEE
Confidence 677777664 4467899999999888887789888877776666666543 3544
No 260
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=80.96 E-value=2.3 Score=36.05 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028050 98 ISASQMLGEVSRLLKPGGIYMLITYGDPKAR 128 (214)
Q Consensus 98 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 128 (214)
..+..+|..+..+|+|||++++++|.....+
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlEDr 243 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLEDR 243 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHH
Confidence 4668899999999999999999998765543
No 261
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.91 E-value=10 Score=30.74 Aligned_cols=88 Identities=16% Similarity=0.145 Sum_probs=57.1
Q ss_pred HHHhhCCCCCeEEEEcCCccc------------------------------------------eeeeccCCccC-CCCcc
Q 028050 42 FVRKYIPTSSRVLMVGCGNAH------------------------------------------LQMDVRDMSFF-EDESF 78 (214)
Q Consensus 42 ~l~~~~~~~~~iLdiGcG~G~------------------------------------------~~~d~~~~~~~-~~~~f 78 (214)
.++..++.+.++.||||--++ ..+|. ++.+ .++.+
T Consensus 9 ~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~~d~~ 86 (226)
T COG2384 9 TVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLELEDEI 86 (226)
T ss_pred HHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCccCCc
Confidence 344567777889999999987 22222 2212 33468
Q ss_pred eEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCCchhhhhhccccccceEEE
Q 028050 79 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 142 (214)
Q Consensus 79 D~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (214)
|+|+..++ +..-...++++-.+-|+.=-++++-...++.....++.. .+|.+.
T Consensus 87 d~ivIAGM---------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~--~~~~I~ 139 (226)
T COG2384 87 DVIVIAGM---------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSA--NSYEIK 139 (226)
T ss_pred CEEEEeCC---------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHh--CCceee
Confidence 88776654 446788999999998886667777666666555556643 345543
No 262
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=79.64 E-value=10 Score=34.53 Aligned_cols=50 Identities=14% Similarity=0.402 Sum_probs=31.4
Q ss_pred CCCC-hhhHHHHhhccCCc--ccccccccchHHHHHhhCC--CCCeEEEEcCCccc
Q 028050 12 NYGD-ALYWNARYVQEGGS--FDWYQRYSALRPFVRKYIP--TSSRVLMVGCGNAH 62 (214)
Q Consensus 12 ~~~~-~~yW~~~y~~~~~~--~ew~~~~~~l~~~l~~~~~--~~~~iLdiGcG~G~ 62 (214)
.||+ .||.-..|....+. -+.|.. ..+..++...+. +..+|+|..||+|.
T Consensus 145 ~~G~~yE~ll~~fa~~~~k~~GEfyTP-~~v~~liv~~l~~~~~~~i~DpacGsgg 199 (489)
T COG0286 145 LFGDAYEYLLRKFAEAEGKEAGEFYTP-REVSELIVELLDPEPRNSIYDPACGSGG 199 (489)
T ss_pred chhHHHHHHHHHHHHhcCCCCCccCCh-HHHHHHHHHHcCCCCCCeecCCCCchhH
Confidence 3444 45666666665433 344444 355666665554 56699999999996
No 263
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=79.59 E-value=1.5 Score=34.82 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=41.5
Q ss_pred CeEEEEcCCccc---------------------------------------eeeeccCCccCCCCcceEEEeccchhhhc
Q 028050 51 SRVLMVGCGNAH---------------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLM 91 (214)
Q Consensus 51 ~~iLdiGcG~G~---------------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~ 91 (214)
..+.|+|+|+|. +.+|+.+.. | +.-|+|+| .+++..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvic-EmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVIC-EMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHH-HHhhHHh
Confidence 689999999998 445555544 4 35677776 3455444
Q ss_pred CCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 92 CGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
.. +..-.+++.+.+.|+-++.++=
T Consensus 110 i~----E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IE----EKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hc----ccccHHHHHHHHHhhcCCcccc
Confidence 43 4556677777788888887753
No 264
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=78.77 E-value=1.1 Score=36.68 Aligned_cols=58 Identities=28% Similarity=0.300 Sum_probs=37.0
Q ss_pred eeeeccCCcc-------CCCCcceEEEeccchhhh----cCCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 63 LQMDVRDMSF-------FEDESFDAVIDKGTLDSL----MCGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 63 ~~~d~~~~~~-------~~~~~fD~V~~~~~l~~~----~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
+++|++.... |..+.-|+|+|-+.-+.- +.+....+-+.+++.-...+|||||.|+.-
T Consensus 94 lq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 94 LQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred eecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 6677765431 556789999997754311 000011134567778888999999999763
No 265
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=77.57 E-value=4.2 Score=30.56 Aligned_cols=45 Identities=33% Similarity=0.457 Sum_probs=29.8
Q ss_pred CcceEEEeccchhhhcCCC-----CChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 76 ESFDAVIDKGTLDSLMCGT-----NAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
+.+|+++.+- .++ .|+ +..+.--++++.+.+.|+|||+++++.|.
T Consensus 45 ~~v~~~iFNL--GYL-PggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 45 GPVDAAIFNL--GYL-PGGDKSITTKPETTLKALEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp --EEEEEEEE--SB--CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--
T ss_pred CCcCEEEEEC--CcC-CCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeC
Confidence 4899888763 333 332 23456678999999999999999998875
No 266
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=77.49 E-value=1.9 Score=36.76 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028050 98 ISASQMLGEVSRLLKPGGIYMLITYGDPKA 127 (214)
Q Consensus 98 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 127 (214)
..+...|..+..+|+|||++++++|.....
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLED 247 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLED 247 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhh
Confidence 567899999999999999999999875443
No 267
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=73.72 E-value=3.6 Score=37.61 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=37.0
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
+..|++.+. -+.++.|++++ ..|..+ .+.+--.+.|..+.+.|||+|+.+=..+
T Consensus 426 i~~DMR~w~-ap~eq~DI~VS-ELLGSF----GDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 426 ISSDMRKWN-APREQADIIVS-ELLGSF----GDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred EeccccccC-CchhhccchHH-Hhhccc----cCccCCHHHHHHHHhhcCCCceEccchh
Confidence 667888776 34478898865 333333 2335567789999999999998765433
No 268
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=73.67 E-value=7.2 Score=34.26 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhccCCcEEEEE
Q 028050 99 SASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 99 ~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
...++-.-++|.|+++|++++-
T Consensus 385 YS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 385 YSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred hhHHHHHHHHHhcCcCceEEEe
Confidence 3457788899999999999874
No 269
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=72.05 E-value=12 Score=32.92 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=35.3
Q ss_pred eeeeccCCccCCCCcceEEEeccchhhhcCCCCChh-HHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 63 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 63 ~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
.++|+.+++ -+-+.+|+|+++.-+.-=+-...... -...+.+.+.+.++--+++++++..
T Consensus 286 ~~~d~~~l~-~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 286 KQADATDLK-EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred EEcchhhCC-CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 556666665 22268999999876542111100001 3345556667777777888887753
No 270
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=69.29 E-value=2.7 Score=31.24 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.1
Q ss_pred CCCCeEEEEcCCccc
Q 028050 48 PTSSRVLMVGCGNAH 62 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~ 62 (214)
.+...|+|+|||.|+
T Consensus 24 ~~~~~vvD~GsG~Gy 38 (141)
T PF13679_consen 24 KRCITVVDLGSGKGY 38 (141)
T ss_pred CCCCEEEEeCCChhH
Confidence 456799999999998
No 271
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=69.03 E-value=6.9 Score=27.14 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..++||+|+.-+. |.. +.....++.+.+.|+|||++++-+
T Consensus 66 ~~~~~dli~iDg~-H~~-------~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 66 PDGPIDLIFIDGD-HSY-------EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HH--EEEEEEES----H-------HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCCCEEEEEECCC-CCH-------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3568999987552 112 577888999999999999998753
No 272
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=67.29 E-value=22 Score=29.33 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.5
Q ss_pred CCCCeEEEEcCCccc
Q 028050 48 PTSSRVLMVGCGNAH 62 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~ 62 (214)
.++..|||||+|+|.
T Consensus 29 ~~~~~VlEiGpG~G~ 43 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGA 43 (262)
T ss_dssp GTTSEEEEESSTTSC
T ss_pred CCCCEEEEeCCCCcc
Confidence 468899999999998
No 273
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=64.97 E-value=23 Score=29.56 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHHhccCCcEEEE-EEcCCchhh
Q 028050 95 NAPISASQMLGEVSRLLKPGGIYML-ITYGDPKAR 128 (214)
Q Consensus 95 ~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~ 128 (214)
..+.+...++..+..+|+||-.+++ +++.++..+
T Consensus 167 ~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~ 201 (321)
T COG4301 167 LTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAER 201 (321)
T ss_pred CChHHHHHHHHHHHhcCCCcceEEEeccccCHHHH
Confidence 3667889999999999999998877 555555433
No 274
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=64.29 E-value=17 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=24.7
Q ss_pred CcceEEEeccchhhhc--CCCCChhHHHHHHHHHHHhccCCcEEEEE
Q 028050 76 ESFDAVIDKGTLDSLM--CGTNAPISASQMLGEVSRLLKPGGIYMLI 120 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 120 (214)
...|+|+.---+..+. -|+.+......+++.++.+|..+++++++
T Consensus 167 ~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 167 FTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp ---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEE
T ss_pred CCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEe
Confidence 3469998765444443 12235567889999999999555555553
No 275
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=62.98 E-value=6 Score=33.78 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=31.3
Q ss_pred ceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 78 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 78 fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.++|...+++.-+|+.. ...-.+++..+..+++||-.|+|++.
T Consensus 201 ~~LITLlFTlNELfs~s--~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 201 PDLITLLFTLNELFSTS--ISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred hHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 45555555665555442 45668899999999999999999753
No 276
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=62.44 E-value=18 Score=30.87 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=29.4
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..+.||+|+.-.. +- .|+.-.--.+.+++-+.+.||+||++++..
T Consensus 192 ~~~~~dVii~dss-dp--vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 192 KENPFDVIITDSS-DP--VGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ccCCceEEEEecC-Cc--cchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 4678999885321 10 111111245788999999999999998865
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=61.49 E-value=6.8 Score=30.78 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhccCCcEEEEEE
Q 028050 98 ISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 98 ~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.-....+.++.|+|||||.+++..
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEe
Confidence 456889999999999999987754
No 278
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=57.89 E-value=14 Score=31.43 Aligned_cols=16 Identities=25% Similarity=0.303 Sum_probs=6.9
Q ss_pred CCCcceEEEeccchhh
Q 028050 74 EDESFDAVIDKGTLDS 89 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~ 89 (214)
..+.||+.+|+.-++.
T Consensus 174 ~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 174 PNERFDFTMCNPPFYS 189 (299)
T ss_dssp --S-EEEEEE-----S
T ss_pred ccceeeEEecCCcccc
Confidence 3468999999988753
No 279
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=57.00 E-value=86 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=32.9
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..-++++-+++.++ +.+...++++.+.+...||+.+++-...
T Consensus 158 ~ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 158 APTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 34477777887777 6788999999999998899988775443
No 280
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=56.29 E-value=17 Score=27.82 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=36.3
Q ss_pred hHHHHHhhCCCCCeEEEEcCCccc---------------eeeecc-----------CCc-----cCCCCcceEEEeccch
Q 028050 39 LRPFVRKYIPTSSRVLMVGCGNAH---------------LQMDVR-----------DMS-----FFEDESFDAVIDKGTL 87 (214)
Q Consensus 39 l~~~l~~~~~~~~~iLdiGcG~G~---------------~~~d~~-----------~~~-----~~~~~~fD~V~~~~~l 87 (214)
+..+|......+.+|.=.|+|... ...|.. .++ .+.....|+|+....
T Consensus 57 l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~~pd~vivlaw- 135 (160)
T PF08484_consen 57 LREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEELKERKPDYVIVLAW- 135 (160)
T ss_dssp HHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG--SS--SEEEES-G-
T ss_pred HHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHHHhhCCCCEEEEcCh-
Confidence 445555555578889999998765 122211 111 123445788776432
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhccCCcEEEE
Q 028050 88 DSLMCGTNAPISASQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 119 (214)
.....+++.+.+.++.||.+++
T Consensus 136 ----------~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 136 ----------NYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp ----------GGHHHHHHHTHHHHHTT-EEEE
T ss_pred ----------hhHHHHHHHHHHHHhcCCEEEE
Confidence 3457888888889999999976
No 281
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=56.04 E-value=5.9 Score=28.97 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=10.4
Q ss_pred eEEEEcCCccce
Q 028050 52 RVLMVGCGNAHL 63 (214)
Q Consensus 52 ~iLdiGcG~G~~ 63 (214)
+|||||||.|..
T Consensus 1 ~vlDiGa~~G~~ 12 (143)
T TIGR01444 1 VVIDVGANIGDT 12 (143)
T ss_pred CEEEccCCccHH
Confidence 489999999984
No 282
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=55.47 E-value=39 Score=29.57 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=49.9
Q ss_pred hCCCCCeEEEEcCCccc------------------------------------------------eeeeccCCccCCCCc
Q 028050 46 YIPTSSRVLMVGCGNAH------------------------------------------------LQMDVRDMSFFEDES 77 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~------------------------------------------------~~~d~~~~~~~~~~~ 77 (214)
.+.||..|.|-=.|||. +.+|.++-+-.....
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 46799999999999997 566766655334678
Q ss_pred ceEEEeccchh------------------------hh-cCCCCC-hhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 78 FDAVIDKGTLD------------------------SL-MCGTNA-PISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 78 fD~V~~~~~l~------------------------~~-~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
||.|+|-.-+. |. ..++.. ..-....|.-.++.|.-||++++.-
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 99999954321 10 000000 0233556777889999999998853
No 283
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=53.72 E-value=11 Score=32.76 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=11.3
Q ss_pred CCeEEEEcCCccc
Q 028050 50 SSRVLMVGCGNAH 62 (214)
Q Consensus 50 ~~~iLdiGcG~G~ 62 (214)
+.+|||++||+|.
T Consensus 198 ~~~vlDl~~G~G~ 210 (353)
T TIGR02143 198 KGDLLELYCGNGN 210 (353)
T ss_pred CCcEEEEeccccH
Confidence 3479999999997
No 284
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=49.92 E-value=39 Score=26.00 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=31.7
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.++||+|++-.-+ + ..+...++...+.-++|+++.+++.+-
T Consensus 84 ~~~~d~vv~DPPF--l-----~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 84 KGKFDVVVIDPPF--L-----SEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCCceEEEECCCC--C-----CHHHHHHHHHHHHHHhCccceEEEecH
Confidence 4789999998776 2 336667788888888899999988763
No 285
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=48.12 E-value=14 Score=32.22 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=14.4
Q ss_pred HHHhhCC-CCCeEEEEcCCccc
Q 028050 42 FVRKYIP-TSSRVLMVGCGNAH 62 (214)
Q Consensus 42 ~l~~~~~-~~~~iLdiGcG~G~ 62 (214)
.+...+. .+.+|||++||+|.
T Consensus 198 ~v~~~~~~~~~~vLDl~~G~G~ 219 (362)
T PRK05031 198 WALDATKGSKGDLLELYCGNGN 219 (362)
T ss_pred HHHHHhhcCCCeEEEEeccccH
Confidence 3333443 23589999999997
No 286
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=47.35 E-value=28 Score=35.22 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=40.4
Q ss_pred CCeEEEEcCCccc---------------------------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCC
Q 028050 50 SSRVLMVGCGNAH---------------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNA 96 (214)
Q Consensus 50 ~~~iLdiGcG~G~---------------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~ 96 (214)
+..+||+|+|.-. ++.|......+....+|++.|..+|.+-.-+ .
T Consensus 823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~--a 900 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAAS--A 900 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHH--C
T ss_pred cceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhc--C
Confidence 5799999999876 6666655543456789999999988765322 2
Q ss_pred hhHHHHHHHHHHHhccCCcE
Q 028050 97 PISASQMLGEVSRLLKPGGI 116 (214)
Q Consensus 97 ~~~~~~~l~~~~~~LkpgG~ 116 (214)
.-+..+.++.+.+.+++.|.
T Consensus 901 ~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 901 NVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp T--HHHHHHHHHHHHHCTT-
T ss_pred CCcHHHHHHHHHHHHHhCCc
Confidence 24788999999999988874
No 287
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=46.89 E-value=50 Score=27.99 Aligned_cols=21 Identities=5% Similarity=0.222 Sum_probs=17.1
Q ss_pred HHHHHHHHhccCCcEEEEEEc
Q 028050 102 QMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 102 ~~l~~~~~~LkpgG~l~~~~~ 122 (214)
..++.+.+.|++||+++++..
T Consensus 247 ~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHhhcCCEEEEEcc
Confidence 466778889999999988764
No 288
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=46.69 E-value=7.5 Score=27.14 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=8.6
Q ss_pred EEEEcCCccc
Q 028050 53 VLMVGCGNAH 62 (214)
Q Consensus 53 iLdiGcG~G~ 62 (214)
=+|||||.|.
T Consensus 6 NIDIGcG~GN 15 (124)
T PF07101_consen 6 NIDIGCGAGN 15 (124)
T ss_pred ccccccCCCc
Confidence 4799999997
No 289
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=43.36 E-value=45 Score=31.44 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=17.0
Q ss_pred HHHHHHHHHhccCCcEEEE
Q 028050 101 SQMLGEVSRLLKPGGIYML 119 (214)
Q Consensus 101 ~~~l~~~~~~LkpgG~l~~ 119 (214)
..++..+.|+++|||.+.-
T Consensus 186 ~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 186 PNLFNALARLARPGATLAT 204 (662)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 6899999999999999864
No 290
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=42.73 E-value=76 Score=20.23 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhccCCcEEEEEEcCCchhhhhhcccc
Q 028050 98 ISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWK 135 (214)
Q Consensus 98 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 135 (214)
..+...+-+....|++|..+.++.-..|......+...
T Consensus 10 ~~p~~~il~~~~~L~~Ge~l~lv~d~~P~pL~~~l~~~ 47 (69)
T PF10006_consen 10 PEPHERILEALDELPPGETLELVNDHDPRPLYPQLEER 47 (69)
T ss_pred cChHHHHHHHHHcCCCCCEEEEEeCCCCHHHHHHHHHh
Confidence 46667777778888999988887766666655555544
No 291
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=41.99 E-value=61 Score=29.41 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHH-HHhccCCcEEEEEEcCC
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEV-SRLLKPGGIYMLITYGD 124 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~-~~~LkpgG~l~~~~~~~ 124 (214)
....||+|++.+.++++... .......++. .+..++|+.++++.-+.
T Consensus 271 ~~~~yDlvi~ah~l~~~~s~----~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 271 IKNGYDLVICAHKLHELGSK----FSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred cccceeeEEeeeeeeccCCc----hhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 34569999999999887332 3444444444 45567899999987654
No 292
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=40.66 E-value=47 Score=27.47 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=12.5
Q ss_pred CCcceEEEeccchhh
Q 028050 75 DESFDAVIDKGTLDS 89 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~ 89 (214)
.+.||+++|+.-+|.
T Consensus 151 nE~yd~tlCNPPFh~ 165 (292)
T COG3129 151 NERYDATLCNPPFHD 165 (292)
T ss_pred cceeeeEecCCCcch
Confidence 578999999988863
No 293
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=40.09 E-value=31 Score=24.42 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=28.1
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
...+|+|+..-. ....++....+|+++|+++++....
T Consensus 56 ~~~~d~vid~~g-------------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 56 GRGVDVVIDCVG-------------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp TSSEEEEEESSS-------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cccceEEEEecC-------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 357999987421 2467888899999999999987543
No 294
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=39.12 E-value=34 Score=29.01 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=17.4
Q ss_pred hHHHHHhh-CCCCCeEEEEcCCccc
Q 028050 39 LRPFVRKY-IPTSSRVLMVGCGNAH 62 (214)
Q Consensus 39 l~~~l~~~-~~~~~~iLdiGcG~G~ 62 (214)
+.+++... +.++..+||.+||.|.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GG 32 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGG 32 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChH
Confidence 44455432 3577899999999998
No 295
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.97 E-value=93 Score=24.48 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=33.4
Q ss_pred CCCCcceEEEeccchhhhcC-CCCCh----hHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 73 FEDESFDAVIDKGTLDSLMC-GTNAP----ISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 73 ~~~~~fD~V~~~~~l~~~~~-~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
...+..|+|+++.+|.-+.- +..+. ++..+++..+..+|++.-.++..+..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 35667899999999876642 22223 35566666677777788777665543
No 296
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=37.85 E-value=9.8 Score=27.07 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=22.7
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+.||+|+..-. . ....++..+.++| |||+++.+.
T Consensus 17 ~~~~D~ViD~~g-~----------~~~~~~~~~~~~l-~~G~~v~i~ 51 (127)
T PF13602_consen 17 PGGVDVVIDTVG-Q----------TGESLLDASRKLL-PGGRVVSIG 51 (127)
T ss_dssp TS-EEEEEESS--C----------CHHHCGGGCCCTE-EEEEEEEE-
T ss_pred CCCceEEEECCC-C----------ccHHHHHHHHHHC-CCCEEEEEC
Confidence 568999987532 1 1344557778888 999986654
No 297
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=37.49 E-value=1.4e+02 Score=20.67 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=7.9
Q ss_pred CcceEEEeccch
Q 028050 76 ESFDAVIDKGTL 87 (214)
Q Consensus 76 ~~fD~V~~~~~l 87 (214)
...|++++..-+
T Consensus 48 ~~aDiiv~s~~l 59 (93)
T COG3414 48 DGADIIVTSTKL 59 (93)
T ss_pred CcccEEEEehHh
Confidence 457998876433
No 298
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=36.55 E-value=40 Score=28.57 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=24.1
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+.||+|+.....-|+ +-.++.++++|+|+|++-+
T Consensus 220 ~~~Fd~ifvs~s~vh~------------L~p~l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHF------------LKPELFQALAPDAVLVVET 254 (289)
T ss_pred cCCCCEEEEhhhhHhh------------cchHHHHHhCCCCEEEEEc
Confidence 3579988876654444 1123788899999998755
No 299
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=30.93 E-value=81 Score=24.61 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=22.7
Q ss_pred CcceEEEeccchhhhc-CCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 76 ESFDAVIDKGTLDSLM-CGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
..||+||...+=..-+ .+ ......++.+.+.++.||-|+++.
T Consensus 66 ~~yD~vIl~dv~~~~ll~~----~~~~~~~~~l~~yV~~GGgLlmig 108 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKS----RRSPNQLELLADYVRDGGGLLMIG 108 (177)
T ss_dssp CT-SEEEEES--HHHHHT--------HHHHHHHHHHHHTT-EEEEE-
T ss_pred hcCCEEEEeCCCchhcccc----cCCHHHHHHHHHHHHhCCEEEEEe
Confidence 5799999766422110 00 013667788888888888777764
No 300
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=30.48 E-value=44 Score=24.41 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=32.8
Q ss_pred CCeEEEEcCCccceeeeccC-CccCCCCcceEEEeccchhhhcCCCCChhHH----HHHHHHHHHhccCCcEEEEEEcCC
Q 028050 50 SSRVLMVGCGNAHLQMDVRD-MSFFEDESFDAVIDKGTLDSLMCGTNAPISA----SQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 50 ~~~iLdiGcG~G~~~~d~~~-~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
+...|++-. +|+.+ ++ --...||+|+.-+ + ++..++ ..+++.+.++++|||.+. ||+.
T Consensus 29 ~~v~L~L~~------gDa~~~l~-~l~~~~Da~ylDg----F----sP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~ 91 (124)
T PF05430_consen 29 GNVTLTLWF------GDAREMLP-QLDARFDAWYLDG----F----SPAKNPELWSEELFKKLARLSKPGGTLA--TYSS 91 (124)
T ss_dssp TTEEEEEEE------S-HHHHHH-HB-T-EEEEEE-S----S-----TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--
T ss_pred CCEEEEEEE------cHHHHHHH-hCcccCCEEEecC----C----CCcCCcccCCHHHHHHHHHHhCCCcEEE--Eeec
Confidence 344555544 45543 22 2236899998543 2 122233 689999999999999764 4544
Q ss_pred ch
Q 028050 125 PK 126 (214)
Q Consensus 125 ~~ 126 (214)
..
T Consensus 92 a~ 93 (124)
T PF05430_consen 92 AG 93 (124)
T ss_dssp BH
T ss_pred hH
Confidence 33
No 301
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=30.31 E-value=58 Score=28.55 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=17.3
Q ss_pred HHHHHHHHHhccCCcEEEEEEcCC
Q 028050 101 SQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 101 ~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
..+++.+.+.|+- |.+++++|+.
T Consensus 222 ~~~l~~ia~~L~~-G~~l~iDYG~ 244 (370)
T COG1565 222 EALLKAIAERLER-GVFLFIDYGY 244 (370)
T ss_pred HHHHHHHHHHHhh-CeEEEEecCC
Confidence 4777778888877 7777777765
No 302
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.96 E-value=2.8e+02 Score=23.45 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=34.1
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
...-=++++-+++.++ +++...+++..|...+.||-.++...
T Consensus 168 ~~~pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 168 RSRPTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred cCCCeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 3444588888888888 77899999999999998888886654
No 303
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.86 E-value=2.4e+02 Score=21.76 Aligned_cols=15 Identities=13% Similarity=0.476 Sum_probs=12.9
Q ss_pred CCCCeEEEEcCCccc
Q 028050 48 PTSSRVLMVGCGNAH 62 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~ 62 (214)
++..+.+|+|.|.|+
T Consensus 71 n~~GklvDlGSGDGR 85 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGR 85 (199)
T ss_pred CCCCcEEeccCCCce
Confidence 355699999999998
No 304
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=29.23 E-value=1.2e+02 Score=26.27 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=30.3
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..||.|+..-.= ......-.|..+.++|+|||.++++.-.
T Consensus 75 ~~~d~~~~~~pk--------~k~~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 75 ADCDTLIYYWPK--------NKQEAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred CCCCEEEEECCC--------CHHHHHHHHHHHHHhCCCCCEEEEEEec
Confidence 478988764321 3356778899999999999999997654
No 305
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=26.92 E-value=22 Score=27.36 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=8.7
Q ss_pred eEEEEcCCccc
Q 028050 52 RVLMVGCGNAH 62 (214)
Q Consensus 52 ~iLdiGcG~G~ 62 (214)
.|+|+-||.|-
T Consensus 2 ~vlD~fcG~GG 12 (163)
T PF09445_consen 2 TVLDAFCGVGG 12 (163)
T ss_dssp EEEETT-TTSH
T ss_pred EEEEeccCcCH
Confidence 68999999996
No 306
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=26.89 E-value=48 Score=29.17 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=25.3
Q ss_pred CCCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 74 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 74 ~~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
....||+|=.- -+ -.+..+++.+.+.++.||+|.++.
T Consensus 118 ~~~~fD~IDlD----Pf-------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 118 RQERFDVIDLD----PF-------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp STT-EEEEEE------S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCCEEEeC----CC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence 45678877532 22 457889999999999999998864
No 307
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=26.12 E-value=93 Score=26.59 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=24.7
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 124 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 124 (214)
..+|+|++.-. ...+....+.|+++|+++.+....
T Consensus 210 ~gvDvv~D~vG--------------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 210 KGVDVVLDTVG--------------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCceEEEECCC--------------HHHHHHHHHHhccCCEEEEEecCC
Confidence 35888876422 345666888999999998876543
No 308
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=25.16 E-value=52 Score=25.62 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=16.9
Q ss_pred hHHHHHhhCCCCCeEEEEcCCccc
Q 028050 39 LRPFVRKYIPTSSRVLMVGCGNAH 62 (214)
Q Consensus 39 l~~~l~~~~~~~~~iLdiGcG~G~ 62 (214)
+..++....+++..|||.=||+|.
T Consensus 181 ~~~lI~~~t~~gdiVlDpF~GSGT 204 (231)
T PF01555_consen 181 IERLIKASTNPGDIVLDPFAGSGT 204 (231)
T ss_dssp HHHHHHHHS-TT-EEEETT-TTTH
T ss_pred HHHHHHhhhccceeeehhhhccCh
Confidence 345666677899999999999998
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=24.37 E-value=70 Score=26.10 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.7
Q ss_pred CeEEEEcCCccce
Q 028050 51 SRVLMVGCGNAHL 63 (214)
Q Consensus 51 ~~iLdiGcG~G~~ 63 (214)
.+|+|+|+|+|.+
T Consensus 20 ~~ivE~GaG~G~L 32 (252)
T PF02636_consen 20 LRIVEIGAGRGTL 32 (252)
T ss_dssp EEEEEES-TTSHH
T ss_pred cEEEEECCCchHH
Confidence 5999999999993
No 310
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=23.72 E-value=1.6e+02 Score=22.31 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=26.6
Q ss_pred CcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEcC
Q 028050 76 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
..||.|+.... -..+...-.|..+...|++||.++++.-+
T Consensus 68 ~~~D~vvly~P--------KaK~e~~~lL~~l~~~L~~g~~i~vVGEn 107 (155)
T PF08468_consen 68 QDFDTVVLYWP--------KAKAEAQYLLANLLSHLPPGTEIFVVGEN 107 (155)
T ss_dssp TT-SEEEEE----------SSHHHHHHHHHHHHTTS-TT-EEEEEEEG
T ss_pred cCCCEEEEEcc--------CcHHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 46998876432 23456677899999999999999998644
No 311
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=22.71 E-value=76 Score=27.80 Aligned_cols=68 Identities=19% Similarity=0.161 Sum_probs=43.7
Q ss_pred hCCCCCeEEEEcCCccc--------------------------eeeeccCCccCCCCcceEEEeccchhhhcCCCCChhH
Q 028050 46 YIPTSSRVLMVGCGNAH--------------------------LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPIS 99 (214)
Q Consensus 46 ~~~~~~~iLdiGcG~G~--------------------------~~~d~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~ 99 (214)
..+++...++++||-+. +.-|+...+.++..++|. ..+.-|+ ++
T Consensus 222 ~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~-------~~ 291 (364)
T KOG1269|consen 222 LKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLALKSSFPWNTPLT---RDTITHW-------QD 291 (364)
T ss_pred ccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhcccccCCCccccccccc---hhheeec-------cc
Confidence 34456688999998764 122333232234455665 3344455 66
Q ss_pred HHHHHHHHHHhccCCcEEEEEEcC
Q 028050 100 ASQMLGEVSRLLKPGGIYMLITYG 123 (214)
Q Consensus 100 ~~~~l~~~~~~LkpgG~l~~~~~~ 123 (214)
...++......++++|.+++.++.
T Consensus 292 ~~~~f~~~~~~~~~~~~v~~~e~~ 315 (364)
T KOG1269|consen 292 KSALFRGRVATLKPGGKVLILEYI 315 (364)
T ss_pred ccHHHHhHhhccCcCceEEehhhc
Confidence 778888999999999999887653
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=22.71 E-value=3.5e+02 Score=22.74 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=17.5
Q ss_pred HHHHHHHHhccCCcEEEEEEc
Q 028050 102 QMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 102 ~~l~~~~~~LkpgG~l~~~~~ 122 (214)
..+....+.|++||+++++..
T Consensus 235 ~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 235 GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHHHHHhhCCCcEEEEEec
Confidence 467888899999999988764
No 313
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.32 E-value=64 Score=26.55 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=18.8
Q ss_pred chHHHHHhhCCCCCeEEEEcCCccc
Q 028050 38 ALRPFVRKYIPTSSRVLMVGCGNAH 62 (214)
Q Consensus 38 ~l~~~l~~~~~~~~~iLdiGcG~G~ 62 (214)
.......+.+..|..|+|||+++.+
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~ 49 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTR 49 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCC
Confidence 3444455567889999999999874
No 314
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.88 E-value=1.3e+02 Score=20.65 Aligned_cols=37 Identities=5% Similarity=0.182 Sum_probs=18.7
Q ss_pred CcceEEEeccchhhhcCCC--------CChhHHHHHHHHHHHhcc
Q 028050 76 ESFDAVIDKGTLDSLMCGT--------NAPISASQMLGEVSRLLK 112 (214)
Q Consensus 76 ~~fD~V~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~Lk 112 (214)
..+|+|+...-+...+.+. ...-+..++.+++...|+
T Consensus 49 ~~~D~iv~t~~~~~~~~~ip~~~~~~llt~~~~~~~~e~i~~~l~ 93 (94)
T PRK10310 49 DGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEALQNKILTILQ 93 (94)
T ss_pred CCCCEEEECCccccccCCCCEEEEeecccccCHHHHHHHHHHHHc
Confidence 5689998765443321110 112344566666665554
No 315
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=21.56 E-value=1.9e+02 Score=24.67 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=30.1
Q ss_pred cceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEEc
Q 028050 77 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 122 (214)
Q Consensus 77 ~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 122 (214)
.||+|+....= .....+.-|.++.+.|.|||.++++.-
T Consensus 37 ~~d~~l~~~pK--------~~~e~e~qLa~ll~~~~~g~~i~v~g~ 74 (300)
T COG2813 37 DFDAVLLYWPK--------HKAEAEFQLAQLLARLPPGGEIVVVGE 74 (300)
T ss_pred CCCEEEEEccC--------chHHHHHHHHHHHhhCCCCCeEEEEec
Confidence 79999875432 235778889999999999999988754
No 316
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.91 E-value=97 Score=22.70 Aligned_cols=82 Identities=11% Similarity=0.229 Sum_probs=38.9
Q ss_pred hHHHHHhhCCCCCeEEEEcCCccc-----eeeeccCCccCCCCcceEEEeccch-hhhcCCCCChhHHHHHHHHHHHh--
Q 028050 39 LRPFVRKYIPTSSRVLMVGCGNAH-----LQMDVRDMSFFEDESFDAVIDKGTL-DSLMCGTNAPISASQMLGEVSRL-- 110 (214)
Q Consensus 39 l~~~l~~~~~~~~~iLdiGcG~G~-----~~~d~~~~~~~~~~~fD~V~~~~~l-~~~~~~~~~~~~~~~~l~~~~~~-- 110 (214)
..+++...+..+.+|.-+|+|.+. ...++..........+..+...... -.... ..+.-..+.+.+.+.
T Consensus 24 aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 100 (138)
T PF13580_consen 24 AADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISN---DLEYDEGFARQLLALYD 100 (138)
T ss_dssp HHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHH---HTTGGGTHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhc---ccchhhHHHHHHHHHcC
Confidence 445566667789999999998775 3333333321222233333332211 00000 002334455566666
Q ss_pred ccCCcEEEEEEcC
Q 028050 111 LKPGGIYMLITYG 123 (214)
Q Consensus 111 LkpgG~l~~~~~~ 123 (214)
++||=+|++++.+
T Consensus 101 ~~~gDvli~iS~S 113 (138)
T PF13580_consen 101 IRPGDVLIVISNS 113 (138)
T ss_dssp --TT-EEEEEESS
T ss_pred CCCCCEEEEECCC
Confidence 7999999888765
No 317
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=20.69 E-value=1.3e+02 Score=28.33 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCccc-----------------------eeeeccCCccCCCCcceEEEeccch
Q 028050 48 PTSSRVLMVGCGNAH-----------------------LQMDVRDMSFFEDESFDAVIDKGTL 87 (214)
Q Consensus 48 ~~~~~iLdiGcG~G~-----------------------~~~d~~~~~~~~~~~fD~V~~~~~l 87 (214)
.+..+|| +.||+|. .++++.+.+ -..+.+|+|++...+
T Consensus 504 ~k~mKIL-vaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev~-s~~~~aDIIVtt~~L 564 (602)
T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDYK-GKLETIDIIVCSKHL 564 (602)
T ss_pred CcccEEE-EECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhCc-ccCCCCCEEEEcccc
Confidence 3456788 5599997 455555555 334568999987543
No 318
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=20.48 E-value=73 Score=26.28 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=17.9
Q ss_pred hHHHHHhhCCCCCeEEEEcCCccc
Q 028050 39 LRPFVRKYIPTSSRVLMVGCGNAH 62 (214)
Q Consensus 39 l~~~l~~~~~~~~~iLdiGcG~G~ 62 (214)
........+..|..|+|||+|++.
T Consensus 28 ~~~~A~~~~~~GAdiIDIG~~~~~ 51 (252)
T cd00740 28 ALDVARQQVEGGAQILDLNVDYGG 51 (252)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCC
Confidence 344444566789999999999875
No 319
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=1.2e+02 Score=24.08 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCcceEEEeccchhhhcCCCCChhHHHHHHHHHHHhccCCcEEEEEE
Q 028050 75 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 121 (214)
Q Consensus 75 ~~~fD~V~~~~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 121 (214)
.+.||+|++-..+-.. +...+.-..+.++++++-++++.+
T Consensus 133 k~~fdiivaDPPfL~~-------eCl~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 133 KAHFDIIVADPPFLSE-------ECLAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred HhcccEEEeCCccccc-------hhhhhhHHHHHHHhcCCceEEEec
Confidence 4679999998776544 778889999999999988887765
Done!