BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028051
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 13/156 (8%)
Query: 57 VPDAYRPPPAPTPFDANVRHPQTPPVVQEICSN---------KSDPSVQTTPVPVQDTLG 107
+ +A+R P P P+DA+ R+ ++ +E S+ +SD + V
Sbjct: 73 LSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKW 132
Query: 108 GNSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEY 167
N++ T S D +E SK+ + +K + + ++ + E+EDVCPTCLEEY
Sbjct: 133 ANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMAD----SENMYILSEDEDVCPTCLEEY 188
Query: 168 DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQV 203
+ENP+I+TKC HHFHL+CI+EWMERS+ CPVC +V
Sbjct: 189 TSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKV 224
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 157 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQV 203
+D C CLE + ++P +T C+H +HL CI EW +RS CP+C Q+
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQL 89
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 140 EVELSKSVHHVVAVIEE--EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTC 197
E L+ + V I++ +D C CLE + +P +T C+H +HL CI EW +RS C
Sbjct: 11 EGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQC 70
Query: 198 PVCNQ 202
P+C Q
Sbjct: 71 PMCWQ 75
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 133 LESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWM 191
+ES K++E+ S+ + +I CP CL EY + E R + +C+H FH+ CI EW+
Sbjct: 231 IESYKKVELGESRRLPGTNGII-----CPICLSEYASKETVRCMPECDHCFHVQCIDEWL 285
Query: 192 ERSDTCPVCNQVR 204
+ +CPVC R
Sbjct: 286 KIHSSCPVCRNSR 298
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
E +DVC C E+ IT C H+FH C+ +W+ DTCP+C+Q
Sbjct: 542 EIDDVCAICYHEFTTSAR--ITPCNHYFHALCLRKWLYIQDTCPMCHQ 587
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
E DVC C E+ IT C H+FH C+ +W+ DTCP+C+Q
Sbjct: 542 EINDVCAICYHEFTTSAR--ITPCNHYFHALCLRKWLYIQDTCPMCHQ 587
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
E DVC C E+ IT C H+FH C+ +W+ DTCP+C+Q
Sbjct: 542 EINDVCAICYHEFTTSAR--ITPCNHYFHALCLRKWLYIQDTCPMCHQ 587
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 160 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVC-NQVRL 205
C CL ++ D E R++ KC H FH+ CI +W+E+ TCP+C N+V +
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNI 171
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 160 CPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERSDTCPVCNQVRLKIFAS 210
CP CL E++ E+ R++ KC H FH+ CI W+ TCP+C L F+S
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSS 177
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 13/69 (18%)
Query: 146 SVHHVVAVIEE--------EDVCPTCLEE-YDAENPRIITKCEHHFHLACIFEWMERSDT 196
+VH + A+ E +DVC C +E Y A+ IT+C H FH C+ +W+ D
Sbjct: 599 AVHKISALPEATPAQLQAFDDVCAICYQEMYSAK----ITRCRHFFHGVCLRKWLYVQDR 654
Query: 197 CPVCNQVRL 205
CP+C+++ +
Sbjct: 655 CPLCHEIMM 663
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 152 AVIEEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
+IE D CP CL E++ E+ R++ KC H FH++CI W+ CP+C
Sbjct: 170 GLIERTD-CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLC 218
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 160 CPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
C CL ++++ E R++ KC H FH+ CI +W+E+ TCP+C
Sbjct: 123 CSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 164
>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana
GN=ATL21C PE=3 SV=1
Length = 366
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 133 LESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWM 191
+E+ K++E+ S+ + + VCP CL EY + E R I +C+H FH+ CI W+
Sbjct: 298 IETFKKMELGESRRLSGTNGI-----VCPICLSEYASKETVRFIPECDHCFHVECIDVWL 352
Query: 192 ERSDTCPVCNQ 202
+ +CP+C
Sbjct: 353 KIHGSCPLCRN 363
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCN 201
+ D+C C ++ + +IT C H FH AC+ +W+ +TCP+C+
Sbjct: 532 QHNDICSICFQDMKSA---VITPCSHFFHAACLKKWLYVQETCPLCH 575
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 109 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD 168
N++ S K LK K + ++L + K+ + E+ + D C C+E Y
Sbjct: 236 NARAQSRKQRQLKADAKKAIGKLQLRTLKQGDKEIGP----------DGDSCAVCIELYK 285
Query: 169 AENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
+ I C H FH C+ W+ TCP+C
Sbjct: 286 PNDLVRILTCNHIFHKTCVDPWLLEHRTCPMC 317
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 109 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD 168
N++ S K LK K + ++L + K+ + E+ + D C C+E Y
Sbjct: 236 NARAQSRKQRQLKADAKKAIGRLQLRTLKQGDREIGP----------DGDSCAVCIELYK 285
Query: 169 AENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
+ I C H FH C+ W+ TCP+C
Sbjct: 286 PNDLVRILTCNHIFHKTCVDPWLLEHRTCPMC 317
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 109 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD 168
N++ S K LK K + ++L + K+ + E+ + D C C+E Y
Sbjct: 236 NARAQSRKQRQLKADAKKAIGRLQLRTLKQGDKEIGP----------DGDSCAVCIELYK 285
Query: 169 AENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
+ I C H FH C+ W+ TCP+C
Sbjct: 286 PNDLVRILTCNHIFHKTCVDPWLLEHRTCPMC 317
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 160 CPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
CP C E+Y E C H FH +CI W+E DTCPVC +
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRK 271
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 157 EDVCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
+ C CL EY +AE R++ +C+H+FHL C+ W++ + +CPVC
Sbjct: 135 DTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRN 181
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 109 NSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYD 168
N++ S K LK K + ++L + K+ + E+ + D C C+E Y
Sbjct: 239 NARAQSRKQRQLKADAKKAIGRLQLRTQKQGDKEIGP----------DGDSCAVCIELYK 288
Query: 169 AENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
+ I C H FH C+ W+ TCP+C
Sbjct: 289 PNDLVRILTCNHVFHKTCVDPWLLEHRTCPMC 320
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 160 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCN 201
C CL E+ D E R++ KC+H FH CI W+E TCPVC
Sbjct: 128 CAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCR 170
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQ 202
+E DVC CLEEY+ + I C H +H C+ W+ ++ TCPVC Q
Sbjct: 235 DEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQ 202
+E DVC CLEEY+ + I C H +H C+ W+ ++ TCPVC Q
Sbjct: 235 DEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
>sp|G3X9R7|RN148_MOUSE RING finger protein 148 OS=Mus musculus GN=Rnf148 PE=2 SV=1
Length = 316
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 110 SQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYDA 169
S ++ + LK K + ++L ++ + EL + ED C C + Y A
Sbjct: 229 SNSSTRRQRQLKADVKKAIGQLQLRVLQDGDKELDPN----------EDSCVVCFDMYKA 278
Query: 170 ENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
++ I C+H FH CI W+ TCP+C
Sbjct: 279 QDVIRILTCKHFFHKTCIDPWLLAHRTCPMC 309
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 158 DVCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
D C CL E+ D + R+I+ C H FH CI W E TCPVC +
Sbjct: 152 DQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRR 197
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 150 VVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
V++ + + CP CL E++AE I C H FH CI W+ ++++CP+C
Sbjct: 78 VISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRH 130
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 160 CPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
CP C E+Y E C H FH +CI W+E DTCPVC +
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRK 270
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCN 201
+ D+C C Y N +IT C H FH C+ +W+ +TCP+C+
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLCH 575
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 149 HVVAVIEEEDVCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
+V +E+ C CL E+ D + R++ C H FHL CI W+ + TCP+C +
Sbjct: 196 NVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRR 250
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCN 201
+ D+C C ++ + +IT C H FH C+ +W+ DTCP+C+
Sbjct: 532 KHNDICAICYQDMKSA---VITPCSHFFHAGCLKKWLYVQDTCPLCH 575
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 160 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQVRL 205
C CL ++ D E R++ KC H FH+ CI W+ +CP C Q L
Sbjct: 114 CLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 160 CPTCLEEYD-AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
C CL++ E R + KC+H FHL C+ +W+ R +CP+C Q
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQ 219
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCN 201
+ D+C C Y N +IT C H FH C+ +W+ +TCP+C+
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLCH 575
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 160 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
CP CL E+ D E R+I +C H FH CI W+ TCP+C
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLC 159
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 155 EEEDVCPTCLEEYD-AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
E D C CL+++ E R + C H FHL CI W+ R +CP+C +
Sbjct: 191 ENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRR 239
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 160 CPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERSDTCPVC 200
C CL E+ AE+ R++ KC H FH+ CI W+ + TCP+C
Sbjct: 122 CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLC 163
>sp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana
GN=ATL21B PE=3 SV=1
Length = 362
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 159 VCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQVR 204
VCP CL EY E R I +C+H FH CI W++ +CP+C R
Sbjct: 315 VCPICLSEYVSKETVRFIPECDHCFHAKCIDVWLKIHGSCPLCRNSR 361
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 125 SKTVANVEL-ESTKE--LEVELSKSVHHVVAVIEEEDVCPTCLEEY-DAENPRIITKCEH 180
S VA + L EST E +VEL +S + + VCP CL EY E R + +CEH
Sbjct: 291 SNEVARIGLDESTIESYKKVELGESRR--LPTGSNDVVCPICLSEYATKETVRCLPECEH 348
Query: 181 HFHLACIFEWMERSDTCPVC 200
FH CI W++ +CPVC
Sbjct: 349 CFHTECIDAWLKLHSSCPVC 368
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 157 EDVCPTCLEEYD-AENPRIITKCEHHFHLACIFEWMERSDTCPVCNQVRLKIFA 209
E C CL E++ E+ +++ KC+H FH+ CI +W+ +CP C R IF+
Sbjct: 104 EAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTC---RTSIFS 154
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 160 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
C CL E+ D E RII C H FH+ CI W++ + CP+C
Sbjct: 138 CSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLC 179
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 160 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVC 200
C CL E+ D E R++ KC+H FH CI W++ TCPVC
Sbjct: 124 CAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVC 165
>sp|Q9FL42|ATL69_ARATH Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana
GN=ATL69 PE=3 SV=1
Length = 159
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 108 GNSQETSSKCDDLKEPESKTVANVE---LESTKELEVELSKSVHHVVAVIEEEDVCPTCL 164
G + TS DL P ++ ++ +ES + + S+ + C CL
Sbjct: 44 GRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPR-----PNNGPCSICL 98
Query: 165 EEYDAENP-RIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
+Y+A P R I +C H FH C+ EW+ S TCP+C
Sbjct: 99 CDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRN 137
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 160 CPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
C CL E D + R++ C+H FH+ CI W++ + TCP+C +
Sbjct: 88 CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRK 131
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 142 ELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVC 200
+L K H +E DVC CL+EY+ + I C H +H C+ W+ ++ TCPVC
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 201 NQ 202
Q
Sbjct: 282 KQ 283
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQ 202
+E DVC CL+EY+ + I C H +H C+ W+ ++ TCPVC Q
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 160 CPTCLEEYDAENP--RIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
C CL E++ E+ R++T C H FH CI +W+E + TCPVC +
Sbjct: 114 CAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRR 158
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQ 202
+E DVC CL+EY+ + I C H +H C+ W+ ++ TCPVC Q
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 155 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQ 202
+E DVC CL+EY+ + I C H +H C+ W+ ++ TCPVC Q
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQ 283
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 160 CPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQV 203
C CL E+ A + R++ +C H FH+ACI W+ +CP C Q+
Sbjct: 111 CAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQI 155
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 149 HVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQ 202
HV + +E CP C E+Y C H FH CI W+E+ DTCPVC +
Sbjct: 220 HVGSGLE----CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRK 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,802,951
Number of Sequences: 539616
Number of extensions: 3707304
Number of successful extensions: 12703
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 266
Number of HSP's that attempted gapping in prelim test: 12147
Number of HSP's gapped (non-prelim): 799
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)