BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028052
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 206 bits (524), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 133/197 (67%), Gaps = 3/197 (1%)
Query: 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNV 60
+K FL FKK+K+ +N Y LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+VRNV
Sbjct: 17 IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNV 76
Query: 61 ANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPS--FIR 117
AN+VPP + + T AA+E+AV +KV NI+VIGHS CGGI L+S + S FI
Sbjct: 77 ANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIE 136
Query: 118 SWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHG 177
WV +G A+ KA F C+HCEKE+VN SL NLLTYP++ E + L+L G
Sbjct: 137 EWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKG 196
Query: 178 GYYNFVDCTFEKWTLDY 194
GYY+FV +FE W L++
Sbjct: 197 GYYDFVKGSFELWGLEF 213
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 10/204 (4%)
Query: 7 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 66
S+ ++ EN +++ LAD Q P ++ IAC+DSRV + +PGE F+ RNVAN V
Sbjct: 13 SWAQRMKEENSTYFKELADHQTPHYLWIACSDSRVPAEKLTNLEPGELFVHRNVANQVIH 72
Query: 67 CESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNA 126
+ + +++AV+ +K+E+I++ GH+ CGGIHA M+ ++D I +W+L ++
Sbjct: 73 TDFNCL---SVVQYAVDVLKIEHIIICGHTNCGGIHAAMA---DKDLGLINNWLLHIRDI 126
Query: 127 RLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEK-VRAGALSLHGGYYNFVDC 185
LS + + K +V + NL ++ R LSLHG Y+ D
Sbjct: 127 WFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
Query: 186 TFEKWTLDYDGSNLKESKEVAFRN 209
+ + +E+ E+++RN
Sbjct: 187 FLVDQGV---MATSRETLEISYRN 207
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 15 ENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSET 74
EN +++ LAD Q P ++ I C+DSRV + +PGE F+ RNVAN V +
Sbjct: 21 ENSTYFKELADHQTPHYLFIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCL-- 78
Query: 75 NAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAA 134
+ +++AV+ +K+E+I++ GH+ CGGIHA M+ ++D I +W+L ++
Sbjct: 79 -SVVQYAVDVLKIEHIIICGHTNCGGIHAAMA---DKDLGLINNWLLHIRDIWFKHGHLL 134
Query: 135 SSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEK-VRAGALSLHGGYYNFVDCTFEKWTLD 193
LS + + K +V + NL ++ R LSLHG Y+ D +
Sbjct: 135 GKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDGFLVDQGV- 193
Query: 194 YDGSNLKESKEVAFRN 209
+ +E+ E+++RN
Sbjct: 194 --MATSRETLEISYRN 207
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 7 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 66
S+ ++ EN +++ LAD Q P ++ I C+DSRV + +PGE F+ RNVAN V
Sbjct: 13 SWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIH 72
Query: 67 CESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNA 126
+ + +++AV+ +K+E+I++ GH+ CGGIHA M+ ++D I +W+L ++
Sbjct: 73 TDFNCL---SVVQYAVDVLKIEHIIICGHTNCGGIHAAMA---DKDLGLINNWLLHIRDI 126
Query: 127 RLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEK-VRAGALSLHGGYYNFVDC 185
LS + + K +V + NL ++ R LSLHG Y+ D
Sbjct: 127 WFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
Query: 186 TFEKWTLDYDGSNLKESKEVAFRN 209
+ + +E+ E+++RN
Sbjct: 187 FLVDQGV---MATSRETLEISYRN 207
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 7 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 66
S+ ++ EN +++ LAD Q P ++ I C+DSRV + +PGE F+ RNVAN V
Sbjct: 13 SWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIH 72
Query: 67 CESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNA 126
+ + +++AV+ +K+E+I++ GH+ CGGIHA M+ ++D I +W+L ++
Sbjct: 73 TDFNCL---SVVQYAVDVLKIEHIIICGHTNCGGIHAAMA---DKDLGLINNWLLHIRDI 126
Query: 127 RLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEK-VRAGALSLHGGYYNFVDC 185
LS + + K +V + NL ++ R LSLHG Y+ D
Sbjct: 127 WFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
Query: 186 TFEKWTLDYDGSNLKESKEVAFRN 209
+ + +E+ E+++RN
Sbjct: 187 FLVDQGV---MATSRETLEISYRN 207
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 7 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 66
S+ ++ EN +++ LAD Q P ++ I C+DSRV + +PGE F+ RNVAN V
Sbjct: 13 SWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIH 72
Query: 67 CESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNA 126
+ + +++AV+ +K+E+I++ GH+ CGGIHA M+ ++D I +W+L ++
Sbjct: 73 TDFNCL---SVVQYAVDVLKIEHIIICGHTNCGGIHAAMA---DKDLGLINNWLLHIRDI 126
Query: 127 RLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEK-VRAGALSLHGGYYNFVDC 185
LS + + K +V + NL ++ R LSLHG ++ D
Sbjct: 127 WFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVFDVNDG 186
Query: 186 TFEKWTLDYDGSNLKESKEVAFRN 209
+ + +E+ E+++RN
Sbjct: 187 FLVDQGV---MATSRETLEISYRN 207
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 7 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 66
S+ ++ EN +++ LAD Q P ++ I C+DSR + +PGE F+ RNVAN V
Sbjct: 13 SWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRAPAEKLTNLEPGELFVHRNVANQVIH 72
Query: 67 CESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNA 126
+ + +++AV+ +K+E+I++ GH+ CGGIHA M+ ++D I +W+L ++
Sbjct: 73 TDFNCL---SVVQYAVDVLKIEHIIICGHTNCGGIHAAMA---DKDLGLINNWLLHIRDI 126
Query: 127 RLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEK-VRAGALSLHGGYYNFVDC 185
LS + + K +V + NL ++ R LSLHG Y+ D
Sbjct: 127 WFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
Query: 186 TFEKWTLDYDGSNLKESKEVAFRN 209
+ + +E+ E+++RN
Sbjct: 187 FLVDQGV---MATSRETLEISYRN 207
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 7 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 66
S+ ++ EN +++ LAD Q P ++ I C++SRV + +PGE F+ RNVAN V
Sbjct: 13 SWAQRMKEENSTYFKELADHQTPHYLWIGCSNSRVPAEKLTNLEPGELFVHRNVANQVIH 72
Query: 67 CESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNA 126
+ + +++AV+ +K+E+I++ GH+ CGGIHA M+ ++D I +W+L ++
Sbjct: 73 TDFNCL---SVVQYAVDVLKIEHIIICGHTNCGGIHAAMA---DKDLGLINNWLLHIRDI 126
Query: 127 RLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEK-VRAGALSLHGGYYNFVDC 185
LS + + K +V + NL ++ R LSLHG Y+ D
Sbjct: 127 WFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186
Query: 186 TFEKWTLDYDGSNLKESKEVAFRN 209
+ + +E+ E+++RN
Sbjct: 187 FLVDQGV---MATSRETLEISYRN 207
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 5/164 (3%)
Query: 19 HYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAAL 78
++ +A QAP+++ I CADSRV P+ + PGE F+ RNV N+V + + L
Sbjct: 30 YFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLV---SNKDLNCMSCL 86
Query: 79 EFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLS 138
E+ V+ +K+++ILV GH CG A + + + W+ + R A LS
Sbjct: 87 EYTVDHLKIKHILVCGHYNCGACKAGL-VWHPKTAGVTNLWISDVREVRDKNAAKLHGLS 145
Query: 139 FDHQCSHCEKESVNCSLLNLLTYPWIEEK-VRAGALSLHGGYYN 181
D + +V + N+ P ++ R LS+HG Y
Sbjct: 146 ADDAWDKMVELNVEAQVFNVCASPIVQAAWARGQPLSVHGIVYT 189
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 14/191 (7%)
Query: 20 YQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALE 79
++ LA Q P+F+ I C+DSRV + G +PGE F+ RNVAN+V + + ++
Sbjct: 29 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD---LNCLSVVQ 85
Query: 80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEEDP--SFIRSWVLVGKNARLNTKAAASSL 137
+AV+ ++VE+I++ GHS CGGI A + E+P I +W+L ++ L + +
Sbjct: 86 YAVDVLEVEHIIICGHSGCGGIKAAV-----ENPELGLINNWLLHIRDIWLKHSSLLGKM 140
Query: 138 SFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGA-LSLHGGYYNFVDCTFEKWTLDYDG 196
+ + + +V + NL ++ + G +++HG Y+ D LD
Sbjct: 141 PEEQRLDALYELNVMEQVYNLGHSTIMQSAWKRGQNVTIHGWAYSINDGLLRD--LDVTA 198
Query: 197 SNLKESKEVAF 207
+N +E+ E +
Sbjct: 199 TN-RETLENGY 208
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 24 ADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVN 83
A GQ+P + I C+DSR N LG PGE F +NVAN+ C S A LEFA+
Sbjct: 40 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANI---CHSEDLTLKATLEFAII 95
Query: 84 SVKVENILVIGHSRCGGIHALMSMQDEEDP--------SFIRSWVLVGKNARLNTKAAAS 135
+KV +++ GH+ CGGI ++ Q E P ++ + N +
Sbjct: 96 CLKVNKVIICGHTDCGGIKTCLTNQREALPKVNCSHLYKYLDDIDTMYHEESQNLIHLKT 155
Query: 136 SLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVD 184
H SHC +V ++ P ++ V+ G L ++G YN D
Sbjct: 156 QREKSHYLSHC---NVKRQFNRIIENPTVQTAVQNGELQVYGLLYNVED 201
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 20 YQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALE 79
++ LA Q P+F+ I C+DSRV + G +PGE F+ RNVAN+V + + ++
Sbjct: 26 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLN---CLSVVQ 82
Query: 80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEEDP--SFIRSWVLVGKNARLNTKAAASSL 137
+AV+ ++VE+I++ GH CGG+ A + E+P I +W+L ++ + +
Sbjct: 83 YAVDVLEVEHIIICGHYGCGGVQAAV-----ENPELGLINNWLLHIRDIWFKHSSLLGEM 137
Query: 138 ----SFDHQCSHCEKESV-NCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTL 192
D C E V N ++ W R +++HG Y D L
Sbjct: 138 PQERRLDTLCELNVMEQVYNLGHSTIMQSAW----KRGQKVTIHGWAYGIHDGLLRD--L 191
Query: 193 DYDGSNLKESKEVAFRN 209
D +N +E+ E +R+
Sbjct: 192 DVTATN-RETLEQRYRH 207
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 15 ENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSET 74
E E GQAP F+ I CADSRV I+ +PG+ F+ RNVAN P + +
Sbjct: 47 EEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPEDDS---S 103
Query: 75 NAALEFAVNSVKVENILVIGHSRCGGIHALMS--MQDEEDPSFIRSWVLVGKNARLNTKA 132
A L +A+ +V V +++V+GH+ CGG A + EE+P + RL
Sbjct: 104 QALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTEENPGGTPLVRYLEPIIRLK--- 160
Query: 133 AASSLSFDHQCSHCEKESVNCSLLNLLTYPWIE---EKVRAGALS---LHGGYYNF 182
SL + KE+V ++ N++ P I+ E+ R G +HG Y+
Sbjct: 161 --HSLPEGSDVNDLIKENVKMAVKNVVNSPTIQGAWEQARKGEFREVFVHGWLYDL 214
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 15 ENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSET 74
E E GQAP F+ I CADSRV I+ +PG+ F+ RNVAN P + +
Sbjct: 51 EEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPED---DSS 107
Query: 75 NAALEFAVNSVKVENILVIGHSRCGGIHALMS--MQDEEDPSFIRSWVLVGKNARLNTKA 132
A L +A+ +V V +++V+GH+ CGG A + EE+P + RL
Sbjct: 108 QALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTEENPGGTPLVRYLEPIIRLK--- 164
Query: 133 AASSLSFDHQCSHCEKESVNCSLLNLLTYPWIE---EKVRAGALS---LHGGYYNF 182
SL + KE+V ++ N++ P I+ E+ R G +HG Y+
Sbjct: 165 --HSLPEGSDVNDLIKENVKMAVKNVVNSPTIQGAWEQARKGEFREVFVHGWLYDL 218
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 10/104 (9%)
Query: 20 YQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALE 79
++ LA Q P+F+ I C+DSRV + G +PGE F+ RNVAN+V + + ++
Sbjct: 26 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLN---CLSVVQ 82
Query: 80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEEDP--SFIRSWVL 121
+AV+ ++VE+I++ GH CGG+ A + E+P I +W+L
Sbjct: 83 YAVDVLEVEHIIICGHYGCGGVQAAV-----ENPELGLINNWLL 121
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Query: 7 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 66
+++++ ++ E + LA+GQ+P+++ I CADSRV + +L GE F+ RN+AN
Sbjct: 45 AWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQ--- 101
Query: 67 CESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNA 126
C + L++AV +KV++ILV GH CGG A + + I +W+ ++
Sbjct: 102 CIHSDISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALG---DSRLGLIDNWLRHIRDV 158
Query: 127 -RLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGA-LSLHGGYYNFVD 184
R+N K D + + + +V + N+ +++ AG L++ G Y D
Sbjct: 159 RRMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGD 218
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 7 SFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPP 66
+++++ ++ + + NLA Q P+ + I CADSRV + I+ GE F+ RN+AN
Sbjct: 299 NWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQ--- 355
Query: 67 CESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNA 126
C + L++AV +KV+ ++V GH CGG A + + I +W+ ++
Sbjct: 356 CIHSDMSFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALG---DSRLGLIDNWLRHIRDV 412
Query: 127 RLNTKAAASSLS 138
R + +A S ++
Sbjct: 413 RRHNQAELSRIT 424
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 4 RFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANM 63
RF++ + Q ++++H LA GQ P ++ CADSRV I G+ F+VR ++
Sbjct: 25 RFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHV 84
Query: 64 VPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIH-ALMSMQDEEDP-SFIRSWV- 120
+ S ++E+AV + V I+V+GH CG ++ AL ++ D P ++R V
Sbjct: 85 I------DSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVE 138
Query: 121 LVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTY-PWIEEKVRAGALSLHGGY 179
V + L + S + E+ V+ ++ L+ I E++ G+L++ G
Sbjct: 139 RVAPSVLLGRRDGLS------RVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVT 192
Query: 180 YNFVD 184
Y D
Sbjct: 193 YQLDD 197
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 4 RFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANM 63
RF++ + Q ++++H LA GQ P ++ CADSRV I G+ F+VR ++
Sbjct: 27 RFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHV 86
Query: 64 VPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIH-ALMSMQDEEDP-SFIRSWV- 120
+ S ++E+AV + V I+V+GH CG ++ AL ++ D P ++R V
Sbjct: 87 I------DSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVE 140
Query: 121 LVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTY-PWIEEKVRAGALSLHGGY 179
V + L + S + E+ V+ ++ L+ I E++ G+L++ G
Sbjct: 141 RVAPSVLLGRRDGLS------RVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVT 194
Query: 180 YNFVD 184
Y D
Sbjct: 195 YQLDD 199
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 10 KQKFMENLE-HYQNLAD-GQAPKFMVIACADSRVCP--SNILGFQPGEAFIVRNVANMVP 65
K EN + +++L+D +PK +I C DSR+ LG G+A +++N N+V
Sbjct: 4 KDILRENQDFRFRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIV- 62
Query: 66 PCESGPSETNAALEFAVNSVKVENILVIGHSRCG 99
+ G + A +A+ I+++GH+ CG
Sbjct: 63 --DDGVIRSAAVAIYALGD---NEIIIVGHTDCG 91
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase
pdb|3VRK|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase / Thiocyanate Complex
Length = 219
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 30 KFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVEN 89
+ V+AC D+R+ ++LG Q GEA I+RN ++ + L + + +
Sbjct: 38 RVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVI------NEDAIRCLIISHHLLNTHE 91
Query: 90 ILVIGHSRCG 99
I+++ H+RCG
Sbjct: 92 IILVHHTRCG 101
>pdb|3TEO|A Chain A, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|B Chain B, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|C Chain C, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|D Chain D, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|E Chain E, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|F Chain F, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|G Chain G, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|H Chain H, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|I Chain I, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|J Chain J, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|K Chain K, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|L Chain L, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|M Chain M, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|N Chain N, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|O Chain O, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|P Chain P, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
Length = 204
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 30 KFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFA---VNSVK 86
+ V+ C D RV LG QP +A I RN +V T+ A+ A N
Sbjct: 29 RLWVLTCXDERVHIEQSLGIQPDDAHIYRNAGGIV---------TDDAIRSASLTTNFFG 79
Query: 87 VENILVIGHSRCGGI 101
+ I+V+ H+ CG +
Sbjct: 80 TKEIIVVTHTDCGXL 94
>pdb|3TEN|A Chain A, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|B Chain B, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|C Chain C, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|D Chain D, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|E Chain E, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|F Chain F, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|G Chain G, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|H Chain H, Holo Form Of Carbon Disulfide Hydrolase
Length = 204
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 30 KFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFA---VNSVK 86
+ V+ C D RV LG QP +A I RN +V T+ A+ A N
Sbjct: 29 RLWVLTCMDERVHIEQSLGIQPDDAHIYRNAGGIV---------TDDAIRSASLTTNFFG 79
Query: 87 VENILVIGHSRCG 99
+ I+V+ H+ CG
Sbjct: 80 TKEIIVVTHTDCG 92
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 33 VIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILV 92
++AC D+R+ +LG + GEA ++RN +V + +L + + I++
Sbjct: 41 IVACMDARLDVYRMLGIKEGEAHVIRNAGCVV------TDDVIRSLAISQRLLGTREIIL 94
Query: 93 IGHSRCGGIHALMSMQDEE 111
+ H+ CG +++ D++
Sbjct: 95 LHHTDCG----MLTFTDDD 109
>pdb|3LAS|A Chain A, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
pdb|3LAS|B Chain B, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
Length = 166
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 30 KFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVEN 89
+ ++ C DSR+ + LG G+A I+RN V + +L + +
Sbjct: 32 RVAIVTCMDSRLHVAPALGLALGDAHILRNAGGRV------TDDVIRSLVISEQQLGTSE 85
Query: 90 ILVIGHSRCGG 100
I+V+ H+ CG
Sbjct: 86 IVVLHHTDCGA 96
>pdb|3BDW|B Chain B, Human Cd94NKG2A
pdb|3BDW|D Chain D, Human Cd94NKG2A
pdb|3CDG|K Chain K, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|F Chain F, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CII|H Chain H, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|J Chain J, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 120
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 103 ALMSMQDEEDPSFIR-----SWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLN 157
+L+S+ +EE+ F+ SW+ V +N+ + + L+F H+ + +NC++L
Sbjct: 41 SLLSIDNEEEMKFLSIISPSSWIGVFRNSSHHPWVTMNGLAFKHEIKDSDNAELNCAVLQ 100
Query: 158 L 158
+
Sbjct: 101 V 101
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 65 PPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDP 113
PP E SE L ++V ++ +G C G++A++ Q+EE+P
Sbjct: 153 PPPEEVYSEWEVGLILEDAGIRVGRVVEVG-KYCFGVYAMIVKQEEENP 200
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 147 EKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFV 183
E S CS L + + +EE+V+AG S GGY FV
Sbjct: 401 EASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFV 437
>pdb|2LC3|A Chain A, Solution Nmr Structure Of A Helical Bundle Domain From
Human E3 Ligase Hectd1. Northeast Structural Genomics
Consortium (Nesg) Target Ht6305a
Length = 88
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 107 MQDEEDPSFIRSWVLVGKNARLNTKAAASSL--SFDHQCSHCEKESVN 152
+Q D +F+R W L G N + S L ++ C H K +N
Sbjct: 39 LQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEHGTKSGLN 86
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVR-- 58
+K ++ ++ + N++H ++LA P + ++ DS N+L +A + +
Sbjct: 148 IKSVTITLAQEAYSANVDHLRDLAPSDFPIGVAVSNTDS--ATYNLLTNSREQAVVKKHF 205
Query: 59 ------NVANM--VPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE 110
N+ M + P E + TNA + V+ N+ V GH AL+ D
Sbjct: 206 NHLTAGNIMKMSYMQPTEGNFNFTNA--DAFVDWATENNMTVHGH-------ALVWHSDY 256
Query: 111 EDPSFIRSW 119
+ P+F+++W
Sbjct: 257 QVPNFMKNW 265
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVR-- 58
+K ++ ++ + N++H ++LA P + ++ DS N+L +A + +
Sbjct: 148 IKSVTITLAQEAYSANVDHLRDLAPSDFPIGVAVSNTDS--ATYNLLTNSREQAVVKKHF 205
Query: 59 ------NVANM--VPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE 110
N+ M + P E + TNA + V+ N+ V GH AL+ D
Sbjct: 206 NHLTAGNIMKMSYMQPTEGNFNFTNA--DAFVDWATENNMTVHGH-------ALVWHSDY 256
Query: 111 EDPSFIRSW 119
+ P+F+++W
Sbjct: 257 QVPNFMKNW 265
>pdb|1AOR|A Chain A, Structure Of A Hyperthermophilic Tungstopterin Enzyme,
Aldehyde Ferredoxin Oxidoreductase
pdb|1AOR|B Chain B, Structure Of A Hyperthermophilic Tungstopterin Enzyme,
Aldehyde Ferredoxin Oxidoreductase
Length = 605
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 98 CGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCS 154
CG ++ L ++ + E P + W L A L AS + +H C ++++
Sbjct: 295 CGRVNRLPTVGETEGPEYESVWAL---GANLGINDLASIIEANHMCDELGLDTISTG 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,321,875
Number of Sequences: 62578
Number of extensions: 233283
Number of successful extensions: 507
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 33
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)