Query 028054
Match_columns 214
No_of_seqs 115 out of 827
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 95.3 0.02 6.8E-07 39.8 4.2 31 41-71 11-41 (88)
2 2xtc_A F-box-like/WD repeat-co 95.2 0.022 7.6E-07 39.8 4.2 34 37-70 2-35 (90)
3 2nxp_A Transcription initiatio 87.0 1.4 4.8E-05 33.5 6.1 80 95-178 33-113 (156)
4 1vyh_C Platelet-activating fac 83.7 0.22 7.4E-06 42.8 0.0 54 40-99 8-61 (410)
5 2d68_A FOP, FGFR1OP; alpha hel 79.4 3.9 0.00013 27.8 5.1 30 41-70 19-48 (82)
6 2j4b_A TAF5, transcription ini 75.9 5.2 0.00018 29.7 5.5 63 95-162 14-77 (138)
7 2j49_A Transcription initiatio 72.1 2.4 8.4E-05 32.0 2.8 62 96-162 17-79 (148)
8 2y4t_A DNAJ homolog subfamily 68.2 50 0.0017 27.3 12.1 59 84-143 264-322 (450)
9 2xz2_A CSTF-50, isoform B; RNA 60.0 12 0.00041 24.2 3.8 33 39-71 15-47 (66)
10 3mkr_A Coatomer subunit epsilo 46.8 1.1E+02 0.0037 24.4 11.0 88 42-142 66-156 (291)
11 3ieg_A DNAJ homolog subfamily 46.0 1E+02 0.0036 23.9 13.6 17 127-143 283-299 (359)
12 3q15_A PSP28, response regulat 45.1 68 0.0023 26.2 7.5 27 40-66 9-37 (378)
13 3u4t_A TPR repeat-containing p 44.2 1E+02 0.0034 23.2 9.9 113 27-145 24-137 (272)
14 3dwc_A TCMCP-1, metallocarboxy 43.9 1.8E+02 0.0062 26.1 10.4 90 15-104 323-466 (505)
15 2xpi_A Anaphase-promoting comp 40.3 1.8E+02 0.006 25.0 11.7 63 81-143 154-227 (597)
16 2xcb_A PCRH, regulatory protei 38.2 95 0.0032 21.3 10.3 89 47-143 24-113 (142)
17 2v5f_A Prolyl 4-hydroxylase su 35.3 96 0.0033 20.4 6.9 58 86-143 14-73 (104)
18 3ct5_A Morphogenesis protein 1 33.7 53 0.0018 24.6 4.5 43 19-72 4-51 (159)
19 2dna_A Unnamed protein product 33.1 19 0.00066 23.3 1.6 17 89-105 44-60 (67)
20 1whc_A RSGI RUH-027, UBA/UBX 3 32.9 49 0.0017 20.9 3.6 17 90-106 35-51 (64)
21 3sxm_A Transcriptional regulat 31.8 57 0.0019 22.8 4.3 31 75-105 97-127 (140)
22 1oyi_A Double-stranded RNA-bin 31.6 36 0.0012 22.9 2.8 47 39-93 14-60 (82)
23 2xpi_A Anaphase-promoting comp 31.1 2.5E+02 0.0085 24.0 13.0 71 29-102 396-466 (597)
24 2cp9_A EF-TS, EF-TSMT, elongat 30.6 26 0.00089 22.5 1.9 15 89-103 34-48 (64)
25 2vq2_A PILW, putative fimbrial 30.4 1.5E+02 0.0051 21.2 13.1 13 129-141 160-172 (225)
26 2vgx_A Chaperone SYCD; alterna 29.2 1.5E+02 0.005 20.7 11.8 89 47-143 27-116 (148)
27 1xmk_A Double-stranded RNA-spe 29.0 37 0.0013 22.5 2.5 47 41-94 10-57 (79)
28 2ho1_A Type 4 fimbrial biogene 28.8 1.8E+02 0.006 21.5 14.0 110 27-143 58-168 (252)
29 2jpq_A UPF0352 protein VP2129; 28.7 71 0.0024 21.4 3.8 23 179-201 50-72 (83)
30 3vtx_A MAMA; tetratricopeptide 28.4 1.5E+02 0.0053 20.7 10.4 14 128-141 153-166 (184)
31 3us6_A Histidine-containing ph 26.6 1.9E+02 0.0065 21.2 8.2 94 8-103 7-119 (153)
32 1k8k_G P16, ARP2/3 complex 16 25.9 76 0.0026 23.8 4.0 26 81-106 39-64 (151)
33 2eap_A Lymphocyte cytosolic pr 25.1 57 0.0019 22.3 2.9 24 45-69 25-48 (90)
34 2voi_B BH3-interacting domain 25.1 41 0.0014 18.8 1.8 13 7-19 11-23 (34)
35 3iko_C Nucleoporin NUP84; NPC, 25.1 67 0.0023 28.5 4.2 27 77-103 177-203 (460)
36 2knz_A Ubiquilin-4; cytoplasm, 24.4 81 0.0028 18.9 3.4 16 89-104 36-51 (53)
37 3dwl_G Actin-related protein 2 23.7 41 0.0014 25.4 2.2 25 81-105 40-64 (152)
38 4a18_Q RPL36, 60S ribosomal pr 23.5 1.1E+02 0.0037 21.5 4.2 31 118-148 53-86 (104)
39 2kbw_B BH3-interacting domain 23.2 47 0.0016 18.6 1.8 13 7-19 15-27 (35)
40 3ej9_B Beta-subunit of trans-3 22.9 54 0.0019 21.3 2.3 27 179-205 12-38 (70)
41 2jr2_A UPF0352 protein CPS_261 22.9 73 0.0025 21.0 3.0 20 179-198 49-68 (76)
42 2ekk_A UBA domain from E3 ubiq 22.5 61 0.0021 18.8 2.4 16 88-103 31-46 (47)
43 2jrx_A UPF0352 protein YEJL; h 22.4 76 0.0026 21.3 3.0 22 179-200 50-71 (83)
44 1a17_A Serine/threonine protei 22.1 1.9E+02 0.0064 19.5 12.3 14 88-101 92-105 (166)
45 2juw_A UPF0352 protein SO_2176 22.1 74 0.0025 21.2 2.9 20 179-198 50-69 (80)
46 2y4t_A DNAJ homolog subfamily 21.3 3.3E+02 0.011 22.1 12.2 70 31-103 51-120 (450)
47 3t5x_A PCI domain-containing p 21.2 1.6E+02 0.0055 22.7 5.4 92 27-128 35-131 (203)
48 3qwp_A SET and MYND domain-con 21.2 3.9E+02 0.013 22.8 12.6 95 49-144 295-399 (429)
49 4g26_A Pentatricopeptide repea 20.7 4.2E+02 0.015 23.1 9.2 91 28-123 126-220 (501)
50 3u3w_A Transcriptional activat 20.4 3E+02 0.01 21.2 10.8 87 57-144 46-143 (293)
51 3qwp_A SET and MYND domain-con 20.4 4E+02 0.014 22.7 8.6 81 82-162 292-379 (429)
52 4gcn_A Protein STI-1; structur 20.2 2E+02 0.007 19.2 10.8 106 47-158 14-123 (127)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.31 E-value=0.02 Score=39.83 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028054 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (214)
Q Consensus 41 ~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~ 71 (214)
++|++.|++||..+||.+++.+|.+|+++..
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~ 41 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDM 41 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence 5689999999999999999999999998763
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.17 E-value=0.022 Score=39.77 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028054 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (214)
Q Consensus 37 ~~~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~ 70 (214)
.++.+++|.+|.-||...||..||-+|.+|+++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 4677888999999999999999999999999875
No 3
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=87.03 E-value=1.4 Score=33.54 Aligned_cols=80 Identities=16% Similarity=0.068 Sum_probs=53.6
Q ss_pred HHHHHHHhhChhhhh-cCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHhHhhccCCCCCc
Q 028054 95 DAIEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCP 173 (214)
Q Consensus 95 ~Al~~~~~~~~~L~~-~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~~~~sp 173 (214)
.-.+|++.. ++..+ .=+.+.|=+.++-|++||.+|...+|-+|.+++-.-+...+ .++++.+.++..-....+.+
T Consensus 33 ~L~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~---~~~i~~L~~i~~~~~l~~n~ 108 (156)
T 2nxp_A 33 GLKHFIECS-LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLTKKEHMKGNE 108 (156)
T ss_dssp HHHHHHHTS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCCSHHHHTTCG
T ss_pred HHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHH---HHHHHHHhcCCCHHHHhhcH
Confidence 346777764 33322 23678999999999999999999999999998766665433 57777776654433333334
Q ss_pred hhhhc
Q 028054 174 VGDLL 178 (214)
Q Consensus 174 ~~~l~ 178 (214)
+...+
T Consensus 109 ~~~~f 113 (156)
T 2nxp_A 109 TMLDF 113 (156)
T ss_dssp GGGGG
T ss_pred HHHHH
Confidence 33333
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=83.67 E-value=0.22 Score=42.83 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHH
Q 028054 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 99 (214)
Q Consensus 40 ~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~ 99 (214)
+++++++|++||..+||.+++.+|.+|.+++..... ......+.++.|+..+..
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEEL------DKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcch------hhhhhchhhhhhhheeeH
Confidence 467899999999999999999999999987532211 123344566777666553
No 5
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=79.45 E-value=3.9 Score=27.77 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028054 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (214)
Q Consensus 41 ~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~ 70 (214)
..++.||.+||-..||.=|...|..|+|..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 457899999999999999999999999986
No 6
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=75.93 E-value=5.2 Score=29.71 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=43.5
Q ss_pred HHHHHHHhhChhhhh-cCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHh
Q 028054 95 DAIEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 162 (214)
Q Consensus 95 ~Al~~~~~~~~~L~~-~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~ 162 (214)
.-.+|++.. +++.+ .=+.+.|=+.++-|++||.+|...+|-+|..++-.-+.. . .++++.+.+
T Consensus 14 ~L~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~---~-~~~i~~L~~ 77 (138)
T 2j4b_A 14 SLKTWIEDS-LDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYN---K-SEEIKQFES 77 (138)
T ss_dssp HHHHHHHHS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----C-HHHHHHHTT
T ss_pred HHHHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhh---H-HHHHHHHhc
Confidence 335677764 33332 236789999999999999999999999998876555432 1 455655554
No 7
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=72.06 E-value=2.4 Score=31.96 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=42.0
Q ss_pred HHHHHHhhChhhhh-cCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHh
Q 028054 96 AIEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 162 (214)
Q Consensus 96 Al~~~~~~~~~L~~-~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~ 162 (214)
-.+|++.. +++.+ .=+.+.|=+.++-|++||.+| ..+|-+|..++-.-+.. .+.++++.+.+
T Consensus 17 Lr~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~---~~~~~i~~L~~ 79 (148)
T 2j49_A 17 LKNWVDSS-LEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKD---FHGSEINRLFS 79 (148)
T ss_dssp HHHHHHTS-CTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHH---HHHHHHHTTTT
T ss_pred HHHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHH---HHHHHHHHHhc
Confidence 35677654 22222 225689999999999999999 99999998876655542 23455555444
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=68.19 E-value=50 Score=27.28 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028054 84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (214)
Q Consensus 84 I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l 143 (214)
.......|++++|++++++.-. +...++.....++...-.-+.+.|+..+|+++.++-+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445677888888877765321 1111111112222222222345566677776666543
No 9
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=59.95 E-value=12 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028054 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (214)
Q Consensus 39 ~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~ 71 (214)
+++.|-+||..-|..-||...|..|.+..+..+
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 357789999999999999999999999988654
No 10
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.75 E-value=1.1e+02 Score=24.37 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCHHHH-HHHHHHHh--CCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHhh
Q 028054 42 DMNKLVMNFLVTEGYVDA-AEKFRMES--GTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL 118 (214)
Q Consensus 42 ~l~~lI~~yL~~~Gy~et-a~~f~~E~--~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~L 118 (214)
..-..+++|+...|-.+. ...|.+-. +..|.. ....- ..=.-....|++++|++++++ | .......
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~-~~~~~--~la~~~~~~g~~~~Al~~l~~--~------~~~~~~~ 134 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN-TTFLL--MAASIYFYDQNPDAALRTLHQ--G------DSLECMA 134 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-HHHHH--HHHHHHHHTTCHHHHHHHHTT--C------CSHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-HHHHH--HHHHHHHHCCCHHHHHHHHhC--C------CCHHHHH
Confidence 345677788888775444 44444322 222322 11111 111223577888888888776 2 1111111
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHh
Q 028054 119 QQQRLIELIRNGKVEEALEFAQEE 142 (214)
Q Consensus 119 ~~q~fIeli~~~~~~~Ai~yar~~ 142 (214)
..-.-+.+.|+..+|++..++-
T Consensus 135 --~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 135 --MTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHCCCHHHHHHHHHHH
Confidence 1111244567777777766654
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=45.96 E-value=1e+02 Score=23.95 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=9.7
Q ss_pred HHcCChHHHHHHHHHhc
Q 028054 127 IRNGKVEEALEFAQEEL 143 (214)
Q Consensus 127 i~~~~~~~Ai~yar~~l 143 (214)
...|+..+|+++.++-+
T Consensus 283 ~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 34566666666666543
No 12
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=45.14 E-value=68 Score=26.23 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHH--HhhCHHHHHHHHHHH
Q 028054 40 KEDMNKLVMNFL--VTEGYVDAAEKFRME 66 (214)
Q Consensus 40 ~~~l~~lI~~yL--~~~Gy~eta~~f~~E 66 (214)
.+.+..+|-++. ++.+..+.|..+.++
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~ 37 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAE 37 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 344455555554 555555555555554
No 13
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=44.15 E-value=1e+02 Score=23.23 Aligned_cols=113 Identities=12% Similarity=-0.017 Sum_probs=56.5
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhCH-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhCh
Q 028054 27 EEWEKKLNDVKIRKEDMNKLVMNFLVTEGY-VDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNP 105 (214)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy-~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~ 105 (214)
..+.+.+..-+.+......+.. .+...|- .++...|.+-....+..+.....-...-.-....|+++.|++.+++...
T Consensus 24 ~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 24 EVFNKLEAKKYNSPYIYNRRAV-CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHHHHHHTTCCCSTTHHHHHH-HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3444555444444444444444 4444444 4455555544442211111111112223334678899999988875421
Q ss_pred hhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCc
Q 028054 106 EILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAP 145 (214)
Q Consensus 106 ~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~ 145 (214)
+...+.. .+...-.-+...|+..+|+++.++-+.-
T Consensus 103 -~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 103 -RDTTRLD----MYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp -HSTTCTH----HHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred -cCcccHH----HHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 2122222 2222222345678899999999887654
No 14
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi}
Probab=43.86 E-value=1.8e+02 Score=26.14 Aligned_cols=90 Identities=11% Similarity=0.155 Sum_probs=54.3
Q ss_pred HHhhhcccCCCHHHHHHHHhccCCCHHHHH--------HHHHHHHHhhCHHH----------HHHH-HHHHhCCCCC-cc
Q 028054 15 EAMAMSKKVITREEWEKKLNDVKIRKEDMN--------KLVMNFLVTEGYVD----------AAEK-FRMESGTEPD-ID 74 (214)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~lI~~yL~~~Gy~e----------ta~~-f~~E~~~~~~-~~ 74 (214)
.+.+...+.++.+++-+.++.+..+--++. .+|+-|=+..+.++ +=.. ..+=.|+.|. .|
T Consensus 323 ~~~f~~~~~~s~e~~y~~~n~V~pslIRveADEvTY~lHIilRyEiEk~Li~G~l~v~DLP~~Wn~km~eyLGi~p~~nd 402 (505)
T 3dwc_A 323 VEYFGDQPAFTSSNMKRVIQRVSPGLIRIDADELCYPLHVMLRYEIERDLMDGNIEAEEVPRVWNEKMKSYLGLETLGND 402 (505)
T ss_dssp HHHHCCCTTCSHHHHHHHHTCCCCCSCGGGCCTTTHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHSCCCTTCC
T ss_pred HHHcCCCCCCCHHHHHHHhcccCCCceeeehhhhhhhhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHhcCCCCCCCC
Confidence 344444578999999999999875543332 66777766655443 1122 2233577654 22
Q ss_pred H----------------------------HHHH---H-HHH--HHHHHHCCCHHHHHHHHHhhC
Q 028054 75 L----------------------------ATIT---D-RMA--VKKAVQCGNVEDAIEKVNDLN 104 (214)
Q Consensus 75 ~----------------------------~~~~---~-r~~--I~~~I~~g~i~~Al~~~~~~~ 104 (214)
. ..+. . .-. +...|.+||+.+..+|+++|-
T Consensus 403 ~~G~LQDiHWs~G~fGYFPsY~LG~~yAAQl~~a~~~~~pd~~~~~~i~~Gdf~~i~~WL~e~I 466 (505)
T 3dwc_A 403 KEGCLQDVHWSGGMFGYFPTYSLGAMVAAQLMSCVRRELGEEVVDDCIRKGDLGKILAKQNEKI 466 (505)
T ss_dssp TTTTTSCSTTTTTCCSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHCCCccHHHHHHcCChHHHHHHHHHHH
Confidence 0 1111 1 114 777888899999999988763
No 15
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=40.26 E-value=1.8e+02 Score=24.97 Aligned_cols=63 Identities=19% Similarity=0.070 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHhhChhhh-----------hcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028054 81 RMAVKKAVQCGNVEDAIEKVNDLNPEIL-----------DTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (214)
Q Consensus 81 r~~I~~~I~~g~i~~Al~~~~~~~~~L~-----------~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l 143 (214)
...+.-....|++++|++.+++..|.-. ..........+...-.-+.+.|+..+|+++.++-+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566788999999988886544320 00001112222222333556789999998888754
No 16
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=38.24 E-value=95 Score=21.26 Aligned_cols=89 Identities=15% Similarity=-0.014 Sum_probs=47.8
Q ss_pred HHHHHHhhCHHH-HHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHhhHHHHHHH
Q 028054 47 VMNFLVTEGYVD-AAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE 125 (214)
Q Consensus 47 I~~yL~~~Gy~e-ta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~L~~q~fIe 125 (214)
.+..+...|-++ +...|.+-....|. +......+ =.-....|+++.|+++++.-- .+...++...+.+ =.-
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l--g~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l----g~~ 95 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGL--GACRQSLGLYEQALQSYSYGA-LMDINEPRFPFHA----AEC 95 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH--HHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHH----HHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHH--HHHHHHHhhHHHHHHHHHHHH-hcCCCCcHHHHHH----HHH
Confidence 344555666554 44455544444442 22222222 222457899999999987531 2222233333222 122
Q ss_pred HHHcCChHHHHHHHHHhc
Q 028054 126 LIRNGKVEEALEFAQEEL 143 (214)
Q Consensus 126 li~~~~~~~Ai~yar~~l 143 (214)
+...|+..+|+++.++-+
T Consensus 96 ~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 446789999999888754
No 17
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=35.29 E-value=96 Score=20.45 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=34.5
Q ss_pred HHHHCCCHHHHHHHHHhhChhhhhcC--CchhHhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028054 86 KAVQCGNVEDAIEKVNDLNPEILDTN--PQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (214)
Q Consensus 86 ~~I~~g~i~~Al~~~~~~~~~L~~~~--s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l 143 (214)
.+...|++..|+.|.++-........ ..-.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34688999999999986533222111 11112222222233457899999999988754
No 18
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=33.72 E-value=53 Score=24.62 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=33.6
Q ss_pred hcccCCCHHHHHHHHhccCCCHHHHHHHHHHHHHhhCHHHHHHH-----HHHHhCCCCC
Q 028054 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEK-----FRMESGTEPD 72 (214)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~-----f~~E~~~~~~ 72 (214)
.+++++|.++-.+. .+-|.+||...|+.+.+.+ +..|+|+.|.
T Consensus 4 ~~~~~~t~~~~~~~-----------a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 4 VSNKYLTMSEMKVN-----------AQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp CSSSCCCHHHHHHH-----------HHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred ecCCCCCHHHHHHH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 35667777777553 6889999999999876655 8889998774
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.11 E-value=19 Score=23.30 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.2
Q ss_pred HCCCHHHHHHHHHhhCh
Q 028054 89 QCGNVEDAIEKVNDLNP 105 (214)
Q Consensus 89 ~~g~i~~Al~~~~~~~~ 105 (214)
..||++.|++|+-.+.+
T Consensus 44 t~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 44 TDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp TTSCHHHHHHHHHHCCS
T ss_pred cCCCHHHHHHHHHhCCC
Confidence 46899999999987755
No 20
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.86 E-value=49 Score=20.86 Aligned_cols=17 Identities=12% Similarity=0.226 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHhhChh
Q 028054 90 CGNVEDAIEKVNDLNPE 106 (214)
Q Consensus 90 ~g~i~~Al~~~~~~~~~ 106 (214)
.++++.|++|+-+|.+.
T Consensus 35 ~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 35 NQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp SCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhCCCC
Confidence 57999999999887653
No 21
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=31.85 E-value=57 Score=22.79 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhhCh
Q 028054 75 LATITDRMAVKKAVQCGNVEDAIEKVNDLNP 105 (214)
Q Consensus 75 ~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~ 105 (214)
.....+-..|.++|.+||.+.|.+.+..|..
T Consensus 97 ~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~ 127 (140)
T 3sxm_A 97 VVSNREHKELIERIISGDKEGAIEKLKEHLK 127 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777888999999999999888877643
No 22
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=31.59 E-value=36 Score=22.87 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCH
Q 028054 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNV 93 (214)
Q Consensus 39 ~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i 93 (214)
+...+.+-|+++|.++| -++..++++.|+.. -.-++++..+-.+|-+
T Consensus 14 ~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk------~aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEK------REVNKALYDLQRSAMV 60 (82)
T ss_dssp CSHHHHHHHHHHHSSST--EEHHHHHHHSSSCH------HHHHHHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHcC--CCHHHHHHHHCcCH------HHHHHHHHHHHHCCCE
Confidence 44556777889999999 89999999999852 2345666666666644
No 23
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=31.10 E-value=2.5e+02 Score=23.98 Aligned_cols=71 Identities=11% Similarity=-0.016 Sum_probs=30.6
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Q 028054 29 WEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (214)
Q Consensus 29 ~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~ 102 (214)
+.+.+...+.+....+.++.-|....-+.++...|.+-....|... .. ......-....|++++|++..++
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~--~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-LP--YLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-HH--HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-HH--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333334444445444444433334444444444333333211 11 11223334556677777666654
No 24
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=30.57 E-value=26 Score=22.46 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=12.9
Q ss_pred HCCCHHHHHHHHHhh
Q 028054 89 QCGNVEDAIEKVNDL 103 (214)
Q Consensus 89 ~~g~i~~Al~~~~~~ 103 (214)
.+||++.|+.|+.+.
T Consensus 34 ~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 34 CGGDLKQAEIWLHKE 48 (64)
T ss_dssp HTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 479999999999864
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=30.35 E-value=1.5e+02 Score=21.16 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=6.5
Q ss_pred cCChHHHHHHHHH
Q 028054 129 NGKVEEALEFAQE 141 (214)
Q Consensus 129 ~~~~~~Ai~yar~ 141 (214)
.|+..+|+++.++
T Consensus 160 ~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 160 AGQLGDADYYFKK 172 (225)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4455555555544
No 26
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=29.16 E-value=1.5e+02 Score=20.71 Aligned_cols=89 Identities=16% Similarity=-0.014 Sum_probs=49.6
Q ss_pred HHHHHHhhCHH-HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHhhHHHHHHH
Q 028054 47 VMNFLVTEGYV-DAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE 125 (214)
Q Consensus 47 I~~yL~~~Gy~-eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~L~~q~fIe 125 (214)
.+.-+...|-+ ++...|.+-..+.|.. .+....+ =.-....|++++|++.+++-- .+...++...+.+ =.-
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l--g~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~l----g~~ 98 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDHYD-SRFFLGL--GACRQAMGQYDLAIHSYSYGA-VMDIXEPRFPFHA----AEC 98 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH--HHHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHH----HHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCccc-HHHHHHH--HHHHHHHhhHHHHHHHHHHHH-hcCCCCchHHHHH----HHH
Confidence 34555556654 5555555544544432 2222222 223467899999999987541 2222333333332 222
Q ss_pred HHHcCChHHHHHHHHHhc
Q 028054 126 LIRNGKVEEALEFAQEEL 143 (214)
Q Consensus 126 li~~~~~~~Ai~yar~~l 143 (214)
+...|+..+|+++.++-+
T Consensus 99 ~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 456799999999998754
No 27
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=29.00 E-value=37 Score=22.54 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHH-HHHHHHHHHHHCCCHH
Q 028054 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATI-TDRMAVKKAVQCGNVE 94 (214)
Q Consensus 41 ~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~-~~r~~I~~~I~~g~i~ 94 (214)
.....-|++||.++|= -||..++++.|+.+ . .-|+++..+-.+|.+.
T Consensus 10 ~~~~~~IL~~Lk~~g~-~ta~eiA~~Lgit~------~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSD-SSALNLAKNIGLTK------ARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHHTCC-EEHHHHHHHHCGGG------HHHHHHHHHHHHHTTSEE
T ss_pred hhHHHHHHHHHHHcCC-cCHHHHHHHcCCCc------HHHHHHHHHHHHHCCCEE
Confidence 4567889999999994 57899999999853 3 4567777777777665
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=28.77 E-value=1.8e+02 Score=21.49 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=51.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhCHHH-HHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhCh
Q 028054 27 EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVD-AAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNP 105 (214)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~e-ta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~ 105 (214)
..+.+.+...+.+... ...++..+...|-.+ +...|.+-....+. +... ......-....|++++|++++++...
T Consensus 58 ~~~~~al~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 58 VPLRKALEIDPSSADA-HAALAVVFQTEMEPKLADEEYRKALASDSR-NARV--LNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH--HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCChHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHH--HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3344444433334333 334444445555444 44444443333322 1221 12223334678888888888876543
Q ss_pred hhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028054 106 EILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (214)
Q Consensus 106 ~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l 143 (214)
....+. ....+...-.-+...|+..+|+++.++-+
T Consensus 134 --~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 134 --DTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp --CTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001111 11111111222345678888888877644
No 29
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=28.72 E-value=71 Score=21.42 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCC
Q 028054 179 DISQRLKTASEVNAAILTSQSHE 201 (214)
Q Consensus 179 ~~~~r~~la~~~n~~iL~~~g~~ 201 (214)
.+.+|+.+|+.|.+|+.++..-+
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~~ 72 (83)
T 2jpq_A 50 AASQRKLIAEKFAQALMSSLETP 72 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999998664
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=28.38 E-value=1.5e+02 Score=20.73 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=7.0
Q ss_pred HcCChHHHHHHHHH
Q 028054 128 RNGKVEEALEFAQE 141 (214)
Q Consensus 128 ~~~~~~~Ai~yar~ 141 (214)
+.|+..+|+++.++
T Consensus 153 ~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 153 GKGLRDEAVKYFKK 166 (184)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 34455555555544
No 31
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=26.58 E-value=1.9e+02 Score=21.20 Aligned_cols=94 Identities=9% Similarity=0.029 Sum_probs=54.5
Q ss_pred HHhHHHHHHhhhcccCCCHHHHHHHHhcc--CCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHhCCCC-------------
Q 028054 8 IRQLAEIEAMAMSKKVITREEWEKKLNDV--KIRKEDMNKLVMNFLVTEG-YVDAAEKFRMESGTEP------------- 71 (214)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~lI~~yL~~~G-y~eta~~f~~E~~~~~------------- 71 (214)
-||+++.-.+...-+.+| ++|.+ +..+ +.+++.+..+|..|+-... ..+........-+.+.
T Consensus 7 ~~~~~~~~~~l~~~g~LD-~~f~q-L~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGs 84 (153)
T 3us6_A 7 RRQWVDYIKSMFMEGFLD-GQFLQ-LQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGS 84 (153)
T ss_dssp HHHHHHHHHHHHHTTSCC-HHHHH-HHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchH-HHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 478888888899999999 66654 3333 3567788888888876541 1111111111000000
Q ss_pred ---CccHHHHHHHHHHHHHHHCCCHHHHHHHHHhh
Q 028054 72 ---DIDLATITDRMAVKKAVQCGNVEDAIEKVNDL 103 (214)
Q Consensus 72 ---~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~ 103 (214)
.--.........+....+.|+.+.+...+.+.
T Consensus 85 s~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l 119 (153)
T 3us6_A 85 SASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQV 119 (153)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00123555667777777888887766655444
No 32
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=25.87 E-value=76 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHhhChh
Q 028054 81 RMAVKKAVQCGNVEDAIEKVNDLNPE 106 (214)
Q Consensus 81 r~~I~~~I~~g~i~~Al~~~~~~~~~ 106 (214)
-.+|+++|..|+..+|++.+-++-|-
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP~ 64 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPPI 64 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 47899999999999999999888653
No 33
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.13 E-value=57 Score=22.31 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHhCC
Q 028054 45 KLVMNFLVTEGYVDAAEKFRMESGT 69 (214)
Q Consensus 45 ~lI~~yL~~~Gy~eta~~f~~E~~~ 69 (214)
.-|++||-+.||.+ ++.|++...+
T Consensus 25 ~~VadWLkk~g~~~-cd~lv~Kh~I 48 (90)
T 2eap_A 25 DSLADYFKKLNYKD-CEKAVKKYHI 48 (90)
T ss_dssp TTHHHHHHHTTCHH-HHHHHHHTTC
T ss_pred HHHHHHHHHcCCch-HHHHHHHhcc
Confidence 35889999999999 8999877655
No 34
>2voi_B BH3-interacting domain death agonist P13; protein-protein complex, BCL-2, membrane, apoptosis, Pro-surviVal, mitochondrion, phosphoprotein; 2.1A {Mus musculus}
Probab=25.12 E-value=41 Score=18.76 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=10.6
Q ss_pred HHHhHHHHHHhhh
Q 028054 7 VIRQLAEIEAMAM 19 (214)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (214)
+.||||.||...|
T Consensus 11 ia~~la~igd~~d 23 (34)
T 2voi_B 11 IARHLAQIGDEMD 23 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHccchhhhhh
Confidence 5789999998755
No 35
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=25.09 E-value=67 Score=28.47 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhh
Q 028054 77 TITDRMAVKKAVQCGNVEDAIEKVNDL 103 (214)
Q Consensus 77 ~~~~r~~I~~~I~~g~i~~Al~~~~~~ 103 (214)
.....+.|-..|+.|++++|++||.+.
T Consensus 177 e~~l~~~i~~liR~G~~~eA~~lc~~~ 203 (460)
T 3iko_C 177 DHIFFKYIYELILAGAIDEALEEAKLS 203 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 455668899999999999999999864
No 36
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=24.43 E-value=81 Score=18.92 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.0
Q ss_pred HCCCHHHHHHHHHhhC
Q 028054 89 QCGNVEDAIEKVNDLN 104 (214)
Q Consensus 89 ~~g~i~~Al~~~~~~~ 104 (214)
..||++.|++|+-.+.
T Consensus 36 t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 36 TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HTSCHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHcC
Confidence 5689999999987653
No 37
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=23.67 E-value=41 Score=25.37 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHhhCh
Q 028054 81 RMAVKKAVQCGNVEDAIEKVNDLNP 105 (214)
Q Consensus 81 r~~I~~~I~~g~i~~Al~~~~~~~~ 105 (214)
-.+|++++..||..+|++.+-++-|
T Consensus 40 ~~qvr~lL~~g~~~~ALk~aL~~pP 64 (152)
T 3dwl_G 40 IPQARSAIQTGNALQGLKTLLSYVP 64 (152)
T ss_dssp HHHHHHHHHHSCCHHHHHHHTSSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 3789999999999999999988855
No 38
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=23.49 E-value=1.1e+02 Score=21.48 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHcCC---hHHHHHHHHHhcCcccc
Q 028054 118 LQQQRLIELIRNGK---VEEALEFAQEELAPRGE 148 (214)
Q Consensus 118 L~~q~fIeli~~~~---~~~Ai~yar~~l~~~~~ 148 (214)
=+-...+||++.+. -..|+.|+++.+..+..
T Consensus 53 PYErR~mELLKvsk~~~dKRAlKf~KKRlGth~R 86 (104)
T 4a18_Q 53 PYEKRIIELIKAGSAKDSKKATKIARKRLGTHRR 86 (104)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHH
T ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHH
Confidence 34557889999998 78999999999877653
No 39
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=23.20 E-value=47 Score=18.64 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.6
Q ss_pred HHHhHHHHHHhhh
Q 028054 7 VIRQLAEIEAMAM 19 (214)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (214)
+.||||.|+...|
T Consensus 15 ia~qla~igd~~d 27 (35)
T 2kbw_B 15 IARHLAQVGDSMD 27 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHccchhhhhh
Confidence 5789999998765
No 40
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=22.92 E-value=54 Score=21.32 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=24.0
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCCCCCC
Q 028054 179 DISQRLKTASEVNAAILTSQSHEKDFS 205 (214)
Q Consensus 179 ~~~~r~~la~~~n~~iL~~~g~~~~~~ 205 (214)
+.++.+++...+.+++.+++|.|.++-
T Consensus 12 T~EQK~~lI~~VT~a~~eslgap~esV 38 (70)
T 3ej9_B 12 SVARKQQLIRDVIDVTNKSIGSDPKII 38 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCChHHE
Confidence 578899999999999999999987754
No 41
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=22.92 E-value=73 Score=20.99 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.8
Q ss_pred ChhhHHHHHHHHHHHHHhhC
Q 028054 179 DISQRLKTASEVNAAILTSQ 198 (214)
Q Consensus 179 ~~~~r~~la~~~n~~iL~~~ 198 (214)
.+.+|+.+|+.|.+++.++.
T Consensus 49 ~~~qR~~iAe~Fa~AL~~Sv 68 (76)
T 2jr2_A 49 PESKRVAVVDNFTKALKQSV 68 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999998874
No 42
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.48 E-value=61 Score=18.83 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=12.4
Q ss_pred HHCCCHHHHHHHHHhh
Q 028054 88 VQCGNVEDAIEKVNDL 103 (214)
Q Consensus 88 I~~g~i~~Al~~~~~~ 103 (214)
...|+++.|++|+-.|
T Consensus 31 ~~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 31 LNTSTMEQATEYLLTH 46 (47)
T ss_dssp HHSCSHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHcC
Confidence 3457999999998654
No 43
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=22.37 E-value=76 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.7
Q ss_pred ChhhHHHHHHHHHHHHHhhCCC
Q 028054 179 DISQRLKTASEVNAAILTSQSH 200 (214)
Q Consensus 179 ~~~~r~~la~~~n~~iL~~~g~ 200 (214)
.+.+|+.+|+.|.+++.++..-
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~ 71 (83)
T 2jrx_A 50 APAQRQAIANSFARALQSSINE 71 (83)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999765
No 44
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=22.11 E-value=1.9e+02 Score=19.50 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=7.9
Q ss_pred HHCCCHHHHHHHHH
Q 028054 88 VQCGNVEDAIEKVN 101 (214)
Q Consensus 88 I~~g~i~~Al~~~~ 101 (214)
...|+++.|+++++
T Consensus 92 ~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 92 MALGKFRAALRDYE 105 (166)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHH
Confidence 34566666665554
No 45
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=22.08 E-value=74 Score=21.20 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=17.7
Q ss_pred ChhhHHHHHHHHHHHHHhhC
Q 028054 179 DISQRLKTASEVNAAILTSQ 198 (214)
Q Consensus 179 ~~~~r~~la~~~n~~iL~~~ 198 (214)
.+.+|+.+|+.|.+|+.++.
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Sv 69 (80)
T 2juw_A 50 PSESRQAVAEQFAKALAQSV 69 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999998874
No 46
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=21.31 E-value=3.3e+02 Score=22.05 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=33.7
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhh
Q 028054 31 KKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDL 103 (214)
Q Consensus 31 ~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~ 103 (214)
+.+...+.+......+..-|+...-+.++...|.+-....|.. .. .......-....|++++|++.+++.
T Consensus 51 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-TA--ARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HH--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333334444444444444444434444444454443333321 11 1222334456788899888887643
No 47
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=21.23 E-value=1.6e+02 Score=22.68 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHH----HhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Q 028054 27 EEWEKKLNDVKIRKEDMNKLVMNFL----VTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (214)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~lI~~yL----~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~ 102 (214)
+.+..++.+.+.+...=.+.|+-|| +-.|...+...|.+ .+.. .-..+.++++.||+..--+++++
T Consensus 35 ~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~-~~~~---------~y~~L~~Avr~Gdl~~f~~~l~~ 104 (203)
T 3t5x_A 35 EYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKK-YHLM---------QFAEVTRAVSEGNLLLLHEALAK 104 (203)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHH-TTCG---------GGHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhh-Cchh---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445566666655555567778888 45566555555532 2221 12468999999999999999998
Q ss_pred hChhhhhcCCch-hHhhHHHHHHHHHH
Q 028054 103 LNPEILDTNPQL-FFHLQQQRLIELIR 128 (214)
Q Consensus 103 ~~~~L~~~~s~L-~F~L~~q~fIeli~ 128 (214)
+...+.+.+-.+ .-.++..-+..+++
T Consensus 105 ~~~~f~~~~~~lll~rlr~~v~r~l~r 131 (203)
T 3t5x_A 105 HEAFFIRCGIFLILEKLKIITYRNLFK 131 (203)
T ss_dssp THHHHHHHTCHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 876666654322 22333333444554
No 48
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=21.17 E-value=3.9e+02 Score=22.83 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=54.6
Q ss_pred HHHHhhCHHHHHHHHHHHh-CCC----CCccHHHHHHHHHHHHH-HHCCCHHHHHHHHHhhChhhhh----cCCchhHhh
Q 028054 49 NFLVTEGYVDAAEKFRMES-GTE----PDIDLATITDRMAVKKA-VQCGNVEDAIEKVNDLNPEILD----TNPQLFFHL 118 (214)
Q Consensus 49 ~yL~~~Gy~eta~~f~~E~-~~~----~~~~~~~~~~r~~I~~~-I~~g~i~~Al~~~~~~~~~L~~----~~s~L~F~L 118 (214)
+-+..+|-++.|..+.+.+ .+. .............+-.. ...|++++|+...++.-....+ .|+.+-..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455777777776666543 321 22233444444444443 5689999999998865433222 344444444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcC
Q 028054 119 QQQRLIELIRNGKVEEALEFAQEELA 144 (214)
Q Consensus 119 ~~q~fIeli~~~~~~~Ai~yar~~l~ 144 (214)
...--+ +...|+..+|+.+.++-+.
T Consensus 375 ~nLa~~-~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKL-QLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHH
Confidence 443333 3356888888888776543
No 49
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.66 E-value=4.2e+02 Score=23.07 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCHHHHH-HHHHHHHHhhCHHHHHHHHHHH---hCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhh
Q 028054 28 EWEKKLNDVKIRKEDMN-KLVMNFLVTEGYVDAAEKFRME---SGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDL 103 (214)
Q Consensus 28 ~~~~~~~~~~~~~~~l~-~lI~~yL~~~Gy~eta~~f~~E---~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~ 103 (214)
++-+.|....+.++... ..++.-+.+.|..+.|..+-++ .|+.| +...--.-|......|+++.|.+.+++.
T Consensus 126 ~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----d~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP----EEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q ss_pred ChhhhhcCCchhHhhHHHHH
Q 028054 104 NPEILDTNPQLFFHLQQQRL 123 (214)
Q Consensus 104 ~~~L~~~~s~L~F~L~~q~f 123 (214)
+...... +...|.+...-|
T Consensus 202 r~~g~~p-s~~T~~~l~~~F 220 (501)
T 4g26_A 202 RDLVRQV-SKSTFDMIEEWF 220 (501)
T ss_dssp HHHTSSB-CHHHHHHHHHHH
T ss_pred HHhCCCc-CHHHHHHHHHHH
No 50
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=20.43 E-value=3e+02 Score=21.25 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCC--------CccHHHHH-HHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHhhHHHHHHH--
Q 028054 57 VDAAEKFRMESGTEP--------DIDLATIT-DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE-- 125 (214)
Q Consensus 57 ~eta~~f~~E~~~~~--------~~~~~~~~-~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~L~~q~fIe-- 125 (214)
.++...+++..|+++ ..+.+... ....+...+..|+++.|++.+++.-.. ....+.....+.....+-
T Consensus 46 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~ 124 (293)
T 3u3w_A 46 MDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHH
Confidence 456666677777653 11223333 334588889999999999998764221 111112111111111111
Q ss_pred HHHcCChHHHHHHHHHhcC
Q 028054 126 LIRNGKVEEALEFAQEELA 144 (214)
Q Consensus 126 li~~~~~~~Ai~yar~~l~ 144 (214)
....++..+|+++.++-+.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHH
Confidence 2345688999999998664
No 51
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=20.36 E-value=4e+02 Score=22.72 Aligned_cols=81 Identities=12% Similarity=0.066 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHhhC---hhhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCcc----ccccHHHH
Q 028054 82 MAVKKAVQCGNVEDAIEKVNDLN---PEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPR----GEENQSFL 154 (214)
Q Consensus 82 ~~I~~~I~~g~i~~Al~~~~~~~---~~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~----~~~~~~~~ 154 (214)
..+...-..|++++|++.+++.- ..++..+....-...-.-..-+...|+.++|+.+.++-+..+ +..||+.-
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34555567899999999886432 122222222222222222333456799999999999876543 34566544
Q ss_pred HHHHHHHh
Q 028054 155 EELERTVA 162 (214)
Q Consensus 155 ~~i~~l~~ 162 (214)
..+..+..
T Consensus 372 ~~l~nLa~ 379 (429)
T 3qwp_A 372 VQVMKVGK 379 (429)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 52
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=20.20 E-value=2e+02 Score=19.23 Aligned_cols=106 Identities=8% Similarity=0.103 Sum_probs=54.6
Q ss_pred HHHHHHhhCHH-HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHh---hHHHH
Q 028054 47 VMNFLVTEGYV-DAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFH---LQQQR 122 (214)
Q Consensus 47 I~~yL~~~Gy~-eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~---L~~q~ 122 (214)
+.+-++..|-+ ++...|.+-..+.|. +...+..+-.+ ....|++++|++.+++-- .+...+...... .+...
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~--~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAV--YFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH--HHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHH--HHHhhhHHHHHHHHHHHH-HhCcccchhhHHHHHHHHHH
Confidence 44555566654 455556555555443 23333333322 467899999999987532 122222111111 11111
Q ss_pred HHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHH
Q 028054 123 LIELIRNGKVEEALEFAQEELAPRGEENQSFLEELE 158 (214)
Q Consensus 123 fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~ 158 (214)
=.-+...|+..+|+++-++-+.... .|+..+.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~--~~~~~~~l~ 123 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR--DPELVKKVK 123 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC--CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc--CHHHHHHHH
Confidence 1113457899999999988664322 244444443
Done!