BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028055
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 71
L KGPWT EED+ +I +KK+G W + K R GK CR RW N+L P++K+ +++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
+EE+ I H +LGNRW+ IA LPGRTDN +KN W++ +K+K
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 71
L KGPWT EED+ +I H++K+G W + K R GK CR RW N+L P++K+ +++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
+EE+ I H LGNRW+ IA LPGRTDN +KN W++ +++K
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 48 RCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKN 106
R C+ RW L P++ +G ++KEE++ +I G RWS IA L GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 VWHTHL 112
WH HL
Sbjct: 68 RWHNHL 73
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 71
L KGPWT EED+ +I ++K+G W + K R GK CR RW N+L P++K+ +++
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
+EE+ I H LGNRW+ IA LPGRTDN IKN W++ +++K
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLL--RCGKSCRLRWINYLRPDIKRGN 69
L K WT EED L ++++G +W+ + A L R C+ RW L P++ +G
Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPELIKGP 60
Query: 70 FSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHL 112
++KEE++ +I L G RWS IA L GR + + WH HL
Sbjct: 61 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 71
L KGPWT EED+ +I ++K+G W + K R GK CR RW N+L P++K+ +++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
+EE+ I H LGNRW+ IA LPGRTDN IKN W++ +++K
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 71
L KGPWT EED+ +I ++K+G W + K R GK CR RW N+L P++K+ +++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
+EE+ I H LGNRW+ IA LPGRTDN IKN W++ +++K
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLL--RCGKSCRLRWINYLRPDIKRGNFS 71
KGP+T ED ++ ++K++G NW P+ L R K CR RW N+L P + + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAA 118
EE+ETI + LG++WS IA +PGRTDN IKN W++ + K+ +
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIST 105
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 11 GLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLL--RCGKSCRLRWINYLRPDIKRG 68
KK +TPEED +L + +HG +W+ + A R + CR RW NYL P I
Sbjct: 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMI---AATFPNRNARQCRDRWKNYLAPSISHT 63
Query: 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHT 110
++ EE+ ++ G +W+ IA PGRTD IKN W T
Sbjct: 64 PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 66 KRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHL 112
K+ F+ EE+E + G+ W IA P R + ++ W +L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 65 IKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
+K+ ++++EE+ I H LGNRW+ IA LPGRTDN IKN W++ +++K
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 64 DIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
++K+ ++++EE+ + H LGNRW+ IA LPGRTDN IKN W++ +++K
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKE 73
K +T EED L + ++G +W + Q + R + CR RW NY+ P ++ +S E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
E+ + + G +W+ I+ L R+DN I+N W + +A
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 11 GLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWI 58
L+ PW+PEED +L ++G P W + K R + R RW+
Sbjct: 50 ALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLK-NRSDNNIRNRWM 95
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
L KGPWT EED+ LI ++K+G W + K R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHL 112
+G ++KEE++ +I L G RWS IA L GR + + WH HL
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
L KGPWT EED+ +I ++K+G W + K R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHL 112
+G ++KEE++ +I L G RWS IA L GR + + WH HL
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
L KGPWT EED+ +I ++K+G W + K R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHL 112
+G ++KEE++ +I L G RWS IA L GR + + WH HL
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 17 WTPEEDRILIVHIKKHGHPNWRALPKQAGLL--RCGKSCRLRWINYLRPDIKRGNFS 71
W ED IL + K+G W + A LL + K C+ RW +L P IK+ +S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 27.7 bits (60), Expect = 4.5, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61
K WT EED L +++ G +W+ L R + C+ RW+ L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVL 54
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 56 RWINYLRPDIKRGNFSKEEEE-TIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114
RW+ R D +K ++ ++ H ++ + G PG+ EIK + T+ +K
Sbjct: 189 RWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMMATYKEK 248
Query: 115 KAAA 118
KA+A
Sbjct: 249 KASA 252
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 RGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHL 112
+ +++EE+E + L + G + W IA LP RTD + ++ W L
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 RGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHL 112
+ +++EE+E + L + G + W IA LP RTD + ++ W L
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 66
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 66 KRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116
K+ +S+EEEE +++L ++ +W IA + GRT + + L K A
Sbjct: 8 KKTEWSREEEEKLLHLAKLMPTQWRTIA-PIIGRTAAQCLEHYEFLLDKAA 57
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPK 42
KK WT EE + ++K+G NW A+ K
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK 39
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 26.9 bits (58), Expect = 8.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPK 42
KK WT EE + ++K+G NW A+ K
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISK 38
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 26.9 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPK 42
KK WT EE + ++K+G NW A+ K
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISK 42
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 26.9 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPK 42
KK WT EE + ++K+G NW A+ K
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,743,961
Number of Sequences: 62578
Number of extensions: 256263
Number of successful extensions: 551
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 40
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)