Query 028055
Match_columns 214
No_of_seqs 239 out of 1414
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 8.9E-37 3E-41 231.3 10.0 105 11-116 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.7E-36 1.6E-40 228.6 10.0 102 14-116 1-102 (107)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 4E-36 1.4E-40 235.5 9.6 112 3-115 16-127 (128)
4 3osg_A MYB21; transcription-DN 100.0 1.7E-35 5.9E-40 231.7 10.5 107 8-116 5-111 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 2.3E-35 7.8E-40 232.3 10.2 103 13-116 1-103 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 8.3E-34 2.8E-38 229.7 8.0 110 6-116 50-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 8.2E-32 2.8E-36 218.0 6.4 103 11-114 3-106 (159)
8 2dim_A Cell division cycle 5-l 99.9 8.1E-24 2.8E-28 149.5 2.5 66 9-75 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.9 4.4E-22 1.5E-26 155.5 6.3 74 40-114 1-75 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 3.3E-20 1.1E-24 158.2 8.3 105 10-115 4-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.8 6.9E-20 2.4E-24 130.7 5.1 59 53-112 9-67 (73)
12 2juh_A Telomere binding protei 99.8 3.2E-19 1.1E-23 138.6 4.2 82 9-91 12-103 (121)
13 2d9a_A B-MYB, MYB-related prot 99.7 6.6E-19 2.3E-23 120.6 4.3 57 9-66 3-59 (60)
14 2din_A Cell division cycle 5-l 99.7 2.4E-18 8.3E-23 120.0 6.8 57 60-117 2-58 (66)
15 1gvd_A MYB proto-oncogene prot 99.7 7.4E-19 2.5E-23 117.0 3.5 52 12-64 1-52 (52)
16 2roh_A RTBP1, telomere binding 99.7 3.1E-18 1.1E-22 133.2 5.3 79 9-88 26-114 (122)
17 1ity_A TRF1; helix-turn-helix, 99.7 2.6E-18 9E-23 120.8 4.2 62 9-71 5-68 (69)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 1.6E-18 5.6E-23 115.3 2.9 52 12-64 1-52 (52)
19 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-17 3.6E-22 118.7 7.1 56 61-116 3-58 (72)
20 2d9a_A B-MYB, MYB-related prot 99.7 2.3E-17 7.8E-22 112.9 6.2 54 62-115 3-57 (60)
21 3sjm_A Telomeric repeat-bindin 99.7 9.6E-18 3.3E-22 116.7 3.0 56 11-66 8-64 (64)
22 1guu_A C-MYB, MYB proto-oncoge 99.7 4.3E-17 1.5E-21 108.4 5.9 50 65-114 1-51 (52)
23 1x41_A Transcriptional adaptor 99.7 2.6E-17 9.1E-22 112.8 4.1 55 10-65 4-58 (60)
24 1gvd_A MYB proto-oncogene prot 99.7 8.8E-17 3E-21 106.9 5.7 50 65-114 1-51 (52)
25 1w0t_A Telomeric repeat bindin 99.7 1.4E-16 4.9E-21 106.4 6.2 49 66-114 1-52 (53)
26 1x41_A Transcriptional adaptor 99.6 2E-16 7E-21 108.3 6.3 53 62-114 3-56 (60)
27 1ity_A TRF1; helix-turn-helix, 99.6 3.8E-16 1.3E-20 109.7 7.2 57 60-116 3-62 (69)
28 2din_A Cell division cycle 5-l 99.6 2.4E-17 8.2E-22 114.9 1.0 60 7-69 2-61 (66)
29 1w0t_A Telomeric repeat bindin 99.6 8E-17 2.7E-21 107.7 2.9 49 13-62 1-51 (53)
30 2dim_A Cell division cycle 5-l 99.6 3.4E-16 1.2E-20 110.2 6.2 55 62-116 4-59 (70)
31 2yum_A ZZZ3 protein, zinc fing 99.6 1.1E-16 3.7E-21 114.1 2.7 60 9-69 3-67 (75)
32 2elk_A SPCC24B10.08C protein; 99.6 2.1E-16 7E-21 107.7 3.5 52 10-61 5-56 (58)
33 2yum_A ZZZ3 protein, zinc fing 99.6 9.5E-16 3.3E-20 109.2 5.6 55 62-116 3-63 (75)
34 3sjm_A Telomeric repeat-bindin 99.6 1.4E-15 4.6E-20 105.8 5.9 51 65-115 9-62 (64)
35 2elk_A SPCC24B10.08C protein; 99.6 2E-15 7E-20 102.8 6.6 51 62-112 4-56 (58)
36 2ltp_A Nuclear receptor corepr 99.4 9.8E-17 3.4E-21 118.4 0.0 58 59-116 8-65 (89)
37 2cu7_A KIAA1915 protein; nucle 99.6 7.1E-16 2.4E-20 109.2 2.8 58 8-67 3-60 (72)
38 2llk_A Cyclin-D-binding MYB-li 99.5 3.5E-15 1.2E-19 106.3 4.0 62 2-67 11-72 (73)
39 2cqr_A RSGI RUH-043, DNAJ homo 99.5 1.7E-14 5.7E-19 102.8 6.1 52 62-113 13-68 (73)
40 3zqc_A MYB3; transcription-DNA 99.5 3.7E-15 1.3E-19 116.7 1.7 85 6-96 46-130 (131)
41 2ckx_A NGTRF1, telomere bindin 99.5 2.7E-14 9.3E-19 104.1 5.2 69 15-84 1-79 (83)
42 2aje_A Telomere repeat-binding 99.5 2.4E-14 8.3E-19 108.6 4.0 79 8-87 7-95 (105)
43 2yus_A SWI/SNF-related matrix- 99.5 3.8E-14 1.3E-18 102.3 4.5 54 5-60 9-62 (79)
44 2yus_A SWI/SNF-related matrix- 99.4 7.8E-14 2.7E-18 100.7 5.1 49 63-111 14-62 (79)
45 1x58_A Hypothetical protein 49 99.4 1.6E-13 5.3E-18 94.4 5.8 50 65-114 6-58 (62)
46 2ckx_A NGTRF1, telomere bindin 99.4 3.6E-13 1.2E-17 98.1 6.7 49 68-116 1-54 (83)
47 3osg_A MYB21; transcription-DN 99.4 3E-13 1E-17 105.1 6.6 53 62-114 6-58 (126)
48 1gv2_A C-MYB, MYB proto-oncoge 99.4 3.6E-13 1.2E-17 101.2 6.5 50 64-113 1-51 (105)
49 2ltp_A Nuclear receptor corepr 99.1 3.1E-14 1.1E-18 104.9 0.0 54 8-63 10-63 (89)
50 2juh_A Telomere binding protei 99.4 5E-13 1.7E-17 103.7 6.4 55 60-114 10-69 (121)
51 1ign_A Protein (RAP1); RAP1,ye 99.4 2.7E-13 9.2E-18 115.7 4.8 54 63-116 4-63 (246)
52 2aje_A Telomere repeat-binding 99.4 7.8E-13 2.7E-17 100.3 6.7 54 62-115 8-66 (105)
53 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.4E-13 4.6E-18 98.1 2.0 55 7-62 11-68 (73)
54 2cjj_A Radialis; plant develop 99.3 2.2E-12 7.6E-17 95.8 7.0 50 66-115 7-60 (93)
55 2k9n_A MYB24; R2R3 domain, DNA 99.3 1.5E-13 5.1E-18 104.0 0.4 57 6-64 45-101 (107)
56 2roh_A RTBP1, telomere binding 99.3 3.9E-12 1.3E-16 98.8 6.7 54 62-115 26-84 (122)
57 3hm5_A DNA methyltransferase 1 99.2 5.8E-11 2E-15 88.0 7.6 66 49-118 16-86 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 1.4E-10 4.9E-15 79.4 6.3 48 66-113 11-58 (61)
59 2cjj_A Radialis; plant develop 99.1 2.7E-11 9.4E-16 89.9 2.0 48 13-61 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 99.0 9.2E-10 3.2E-14 77.9 6.2 50 64-114 5-58 (72)
61 2iw5_B Protein corest, REST co 98.9 3.2E-09 1.1E-13 89.9 6.7 49 66-114 132-180 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 1.6E-09 5.4E-14 74.2 3.3 51 8-60 6-56 (61)
63 1x58_A Hypothetical protein 49 98.8 1.2E-09 4.1E-14 75.0 2.4 49 12-62 6-57 (62)
64 1wgx_A KIAA1903 protein; MYB D 98.7 2.9E-08 1E-12 70.4 6.2 48 67-114 8-59 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.7 6.7E-09 2.3E-13 73.5 2.3 50 11-62 5-57 (72)
66 1fex_A TRF2-interacting telome 98.6 6.2E-08 2.1E-12 65.9 5.3 47 67-113 2-58 (59)
67 1fex_A TRF2-interacting telome 98.6 1.4E-08 4.7E-13 69.2 1.9 48 14-62 2-58 (59)
68 2xag_B REST corepressor 1; ami 98.6 4.4E-08 1.5E-12 91.2 5.1 47 68-114 381-427 (482)
69 1wgx_A KIAA1903 protein; MYB D 98.4 8.4E-08 2.9E-12 68.0 2.5 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.4 1.4E-07 4.9E-12 79.8 3.7 50 11-62 130-179 (235)
71 1ug2_A 2610100B20RIK gene prod 98.3 6.3E-07 2.1E-11 65.7 5.7 46 68-113 34-82 (95)
72 1ofc_X ISWI protein; nuclear p 98.3 2.1E-06 7.2E-11 75.8 8.2 101 15-116 111-277 (304)
73 2yqk_A Arginine-glutamic acid 98.2 3.2E-06 1.1E-10 57.9 6.8 50 62-111 4-54 (63)
74 2lr8_A CAsp8-associated protei 97.5 1.5E-07 5.1E-12 65.5 0.0 44 69-113 16-62 (70)
75 4iej_A DNA methyltransferase 1 98.2 5.5E-06 1.9E-10 61.1 7.7 60 54-117 21-85 (93)
76 4eef_G F-HB80.4, designed hema 98.2 3.6E-07 1.2E-11 64.6 1.1 43 67-109 20-66 (74)
77 4eef_G F-HB80.4, designed hema 98.0 1.4E-06 4.9E-11 61.5 1.1 44 14-58 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.8 1.2E-05 4.2E-10 55.0 3.2 48 9-58 4-52 (63)
79 4a69_C Nuclear receptor corepr 97.8 4.5E-05 1.5E-09 56.3 6.1 45 67-111 43-87 (94)
80 2crg_A Metastasis associated p 97.7 7.8E-05 2.7E-09 52.0 6.4 44 67-110 8-52 (70)
81 2xag_B REST corepressor 1; ami 97.6 3E-05 1E-09 72.2 3.6 48 12-61 378-425 (482)
82 3hm5_A DNA methyltransferase 1 97.4 6.4E-05 2.2E-09 55.4 2.7 49 12-61 28-80 (93)
83 2ebi_A DNA binding protein GT- 97.3 0.00021 7.2E-09 51.3 3.9 48 67-114 4-65 (86)
84 2crg_A Metastasis associated p 97.2 0.00015 5.3E-09 50.5 2.6 44 13-58 7-51 (70)
85 2y9y_A Imitation switch protei 97.2 0.001 3.5E-08 60.1 8.4 100 15-115 124-292 (374)
86 4a69_C Nuclear receptor corepr 97.2 0.00015 5.1E-09 53.4 2.5 43 14-58 43-85 (94)
87 4b4c_A Chromodomain-helicase-D 97.0 0.0041 1.4E-07 51.1 9.8 46 69-114 136-196 (211)
88 2ebi_A DNA binding protein GT- 96.8 0.00019 6.5E-09 51.5 0.2 49 13-61 3-63 (86)
89 2lr8_A CAsp8-associated protei 95.7 0.00028 9.7E-09 49.0 0.0 46 14-61 14-61 (70)
90 1ug2_A 2610100B20RIK gene prod 96.6 0.0012 4.3E-08 48.2 3.1 46 13-59 32-79 (95)
91 1irz_A ARR10-B; helix-turn-hel 95.3 0.051 1.8E-06 37.1 6.2 47 65-111 5-56 (64)
92 4b4c_A Chromodomain-helicase-D 95.1 0.019 6.4E-07 47.1 4.4 40 4-43 124-163 (211)
93 4iej_A DNA methyltransferase 1 94.7 0.017 5.9E-07 42.4 2.7 49 12-61 28-80 (93)
94 1ofc_X ISWI protein; nuclear p 94.2 0.077 2.6E-06 46.7 6.3 47 67-113 110-157 (304)
95 2xb0_X Chromo domain-containin 88.8 0.39 1.3E-05 41.5 4.3 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 86.3 0.64 2.2E-05 31.6 3.4 48 12-60 5-56 (64)
97 2xb0_X Chromo domain-containin 84.3 3.7 0.00013 35.3 8.1 48 67-114 3-55 (270)
98 2o8x_A Probable RNA polymerase 78.9 4.4 0.00015 26.0 5.3 41 73-114 18-58 (70)
99 1ku3_A Sigma factor SIGA; heli 75.1 6.4 0.00022 25.9 5.3 40 74-114 14-57 (73)
100 2p7v_B Sigma-70, RNA polymeras 73.3 6.3 0.00021 25.6 4.9 40 74-114 9-52 (68)
101 3hug_A RNA polymerase sigma fa 70.5 15 0.00051 25.2 6.6 40 74-114 41-80 (92)
102 2li6_A SWI/SNF chromatin-remod 66.9 4.7 0.00016 29.9 3.4 37 78-114 54-98 (116)
103 2lm1_A Lysine-specific demethy 64.0 12 0.0004 27.1 5.0 38 77-114 48-97 (107)
104 1kkx_A Transcription regulator 63.1 7.4 0.00025 29.3 3.9 37 78-114 53-97 (123)
105 2jrz_A Histone demethylase jar 63.0 10 0.00036 28.1 4.7 38 77-114 44-93 (117)
106 1x3u_A Transcriptional regulat 62.2 21 0.00073 23.3 5.8 42 70-114 17-58 (79)
107 1tty_A Sigma-A, RNA polymerase 57.8 21 0.00073 24.3 5.3 40 74-114 22-65 (87)
108 2eqy_A RBP2 like, jumonji, at 57.6 15 0.00051 27.4 4.8 38 77-114 46-95 (122)
109 2cxy_A BAF250B subunit, HBAF25 57.6 15 0.00051 27.5 4.8 38 77-114 55-104 (125)
110 3c57_A Two component transcrip 57.5 20 0.00069 24.9 5.2 43 69-114 27-69 (95)
111 1or7_A Sigma-24, RNA polymeras 57.3 23 0.00078 26.9 6.0 31 83-114 153-183 (194)
112 1je8_A Nitrate/nitrite respons 57.3 20 0.0007 24.2 5.1 43 69-114 21-63 (82)
113 2y9y_A Imitation switch protei 57.0 19 0.00064 32.3 6.0 42 68-109 124-167 (374)
114 1fse_A GERE; helix-turn-helix 54.8 26 0.00087 22.4 5.1 44 68-114 10-53 (74)
115 3ulq_B Transcriptional regulat 54.7 30 0.001 24.0 5.8 46 66-114 26-71 (90)
116 2li6_A SWI/SNF chromatin-remod 53.3 4.7 0.00016 29.9 1.2 39 24-63 53-98 (116)
117 1xsv_A Hypothetical UPF0122 pr 52.5 35 0.0012 24.6 6.0 40 74-114 29-68 (113)
118 2yqf_A Ankyrin-1; death domain 52.1 23 0.00078 25.7 4.9 37 69-106 12-48 (111)
119 3mzy_A RNA polymerase sigma-H 52.0 41 0.0014 24.4 6.5 30 84-114 122-151 (164)
120 2jpc_A SSRB; DNA binding prote 50.8 28 0.00095 21.5 4.6 38 75-114 3-40 (61)
121 2of5_H Leucine-rich repeat and 49.7 21 0.00072 26.3 4.4 31 75-106 13-43 (118)
122 2o71_A Death domain-containing 49.5 22 0.00076 26.3 4.5 39 64-106 16-54 (115)
123 2of5_A Death domain-containing 49.2 21 0.00072 26.4 4.3 41 62-106 14-54 (114)
124 3cz6_A DNA-binding protein RAP 48.6 14 0.00046 29.6 3.3 17 63-79 110-126 (168)
125 2kk0_A AT-rich interactive dom 48.1 25 0.00087 27.0 4.8 38 77-114 68-118 (145)
126 1c20_A DEAD ringer protein; DN 47.7 23 0.0008 26.4 4.4 38 77-114 56-106 (128)
127 2rq5_A Protein jumonji; develo 47.0 25 0.00084 26.4 4.4 76 12-113 5-95 (121)
128 2rq5_A Protein jumonji; develo 46.7 9.3 0.00032 28.8 2.0 57 24-83 46-113 (121)
129 1rp3_A RNA polymerase sigma fa 46.1 53 0.0018 25.5 6.6 38 76-114 193-230 (239)
130 2jxj_A Histone demethylase jar 45.7 11 0.00038 26.7 2.2 36 78-113 41-88 (96)
131 2q1z_A RPOE, ECF SIGE; ECF sig 45.7 15 0.00051 27.8 3.1 30 84-114 149-178 (184)
132 3i4p_A Transcriptional regulat 45.4 28 0.00096 26.5 4.7 43 73-116 3-46 (162)
133 1ig6_A MRF-2, modulator recogn 43.8 17 0.00058 26.3 3.0 38 77-114 37-87 (107)
134 2rnj_A Response regulator prot 43.3 27 0.00091 23.9 3.9 42 70-114 30-71 (91)
135 1k78_A Paired box protein PAX5 39.1 1.1E+02 0.0038 22.3 8.3 78 14-96 30-118 (149)
136 3cz6_A DNA-binding protein RAP 38.6 20 0.00069 28.6 2.9 24 10-33 110-141 (168)
137 3e7l_A Transcriptional regulat 38.6 52 0.0018 21.0 4.6 34 73-107 19-52 (63)
138 1s7o_A Hypothetical UPF0122 pr 37.4 1E+02 0.0036 22.1 6.6 40 74-114 26-65 (113)
139 1wxp_A THO complex subunit 1; 37.0 37 0.0013 24.5 4.0 30 76-106 19-48 (110)
140 2dbb_A Putative HTH-type trans 36.7 80 0.0028 23.2 6.0 43 73-116 9-52 (151)
141 1p4w_A RCSB; solution structur 35.9 98 0.0033 21.8 6.1 45 67-114 32-76 (99)
142 1hlv_A CENP-B, major centromer 35.6 33 0.0011 24.7 3.5 35 12-46 3-37 (131)
143 2k27_A Paired box protein PAX- 35.5 1.3E+02 0.0046 22.2 9.3 78 14-96 23-111 (159)
144 1ntc_A Protein (nitrogen regul 34.5 66 0.0022 22.1 4.8 34 73-107 51-84 (91)
145 2e1c_A Putative HTH-type trans 30.2 75 0.0026 24.4 5.0 42 73-115 27-69 (171)
146 1u78_A TC3 transposase, transp 30.0 1.5E+02 0.005 21.0 9.6 88 15-108 5-100 (141)
147 3clo_A Transcriptional regulat 29.9 76 0.0026 25.8 5.2 43 69-114 197-239 (258)
148 2cyy_A Putative HTH-type trans 29.2 97 0.0033 22.9 5.4 42 73-115 7-49 (151)
149 2kk0_A AT-rich interactive dom 29.1 36 0.0012 26.0 2.9 54 24-77 68-134 (145)
150 1qgp_A Protein (double strande 28.0 76 0.0026 21.3 4.1 42 71-113 12-57 (77)
151 1fad_A Protein (FADD protein); 27.8 37 0.0013 23.8 2.6 31 75-106 14-44 (99)
152 3i4p_A Transcriptional regulat 27.8 22 0.00075 27.1 1.4 42 20-63 3-44 (162)
153 1tc3_C Protein (TC3 transposas 25.6 94 0.0032 17.3 5.6 38 69-108 5-42 (51)
154 2lfw_A PHYR sigma-like domain; 25.4 49 0.0017 24.6 3.0 40 74-114 97-136 (157)
155 1k78_A Paired box protein PAX5 24.9 1.8E+02 0.0061 21.1 6.2 38 68-107 31-68 (149)
156 3t72_q RNA polymerase sigma fa 24.9 1.2E+02 0.0042 21.3 5.0 39 75-114 24-66 (99)
157 2ib1_A Death domain containing 24.8 26 0.00087 24.8 1.2 33 72-106 5-37 (91)
158 1qbj_A Protein (double-strande 23.8 1.4E+02 0.0049 20.3 5.0 40 72-112 9-52 (81)
159 1dw9_A Cyanate lyase; cyanate 23.3 77 0.0026 24.9 3.8 30 76-106 16-45 (156)
160 1ngr_A P75 low affinity neurot 23.3 45 0.0015 23.1 2.2 29 72-106 12-40 (85)
161 2cg4_A Regulatory protein ASNC 23.0 1.4E+02 0.0049 21.9 5.3 41 74-115 9-50 (152)
162 3ezq_B Protein FADD; apoptosis 22.8 99 0.0034 22.9 4.2 28 78-106 9-36 (122)
163 1umq_A Photosynthetic apparatu 22.6 94 0.0032 21.4 3.8 35 72-107 40-74 (81)
164 2p5v_A Transcriptional regulat 21.5 1.4E+02 0.0048 22.2 5.0 42 73-115 10-52 (162)
165 2jvw_A Uncharacterized protein 21.4 52 0.0018 23.4 2.2 45 22-79 18-69 (88)
166 1i1g_A Transcriptional regulat 21.3 1.5E+02 0.0051 21.2 5.0 42 74-116 5-47 (141)
167 3eyi_A Z-DNA-binding protein 1 21.3 61 0.0021 22.2 2.5 37 16-53 6-42 (72)
168 1l0o_C Sigma factor; bergerat 21.1 20 0.00069 28.0 0.0 33 80-113 208-240 (243)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=8.9e-37 Score=231.33 Aligned_cols=105 Identities=46% Similarity=0.870 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCCcHH
Q 028055 11 GLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWS 90 (214)
Q Consensus 11 ~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~ 90 (214)
++++|+||+|||++|+++|.+||..+|..||+.+++ |+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999987 9999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 91 AIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 91 ~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
.||+.|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998753
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=4.7e-36 Score=228.61 Aligned_cols=102 Identities=29% Similarity=0.533 Sum_probs=98.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 028055 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIA 93 (214)
Q Consensus 14 kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA 93 (214)
||+||+|||++|+++|..||..+|..||..+++ |+++||++||.++|+|.+++++||.|||.+|++++.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999997 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhHHHH
Q 028055 94 GRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 94 ~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
+.|||||+++|++||+.++++..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHhhHH
Confidence 99999999999999999988754
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=4e-36 Score=235.50 Aligned_cols=112 Identities=44% Similarity=0.825 Sum_probs=103.0
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHH
Q 028055 3 RAPCCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLH 82 (214)
Q Consensus 3 r~~~~~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~ 82 (214)
|+....+|++++|+||+|||++|+++|++||..+|..||+.+++ |++.||++||.++|+|.+++++||+|||++|++++
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 94 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 45556689999999999999999999999998899999999987 99999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHHH
Q 028055 83 DMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 83 ~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk~ 115 (214)
.+||++|+.||+.|||||+++|++||+.+++++
T Consensus 95 ~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 95 KRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999875
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=1.7e-35 Score=231.67 Aligned_cols=107 Identities=36% Similarity=0.648 Sum_probs=101.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCC
Q 028055 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGN 87 (214)
Q Consensus 8 ~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~ 87 (214)
.+.++++|+||+|||++|+++|.+||. +|..||+.+++ |+++||++||.++|+|.+++++||.|||++|++++.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999995 99999999987 9999999999999999999999999999999999999999
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 88 RWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 88 kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
+|+.||+.|||||+++||+||..++++..
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999887643
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.3e-35 Score=232.28 Aligned_cols=103 Identities=40% Similarity=0.725 Sum_probs=100.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 028055 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAI 92 (214)
Q Consensus 13 ~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~I 92 (214)
.||+||+|||++|+.+|..||..+|..||..+++ |+++||++||.++|+|.+++|+||.|||++|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3799999999999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 93 AGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 93 A~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
|.+|||||+++|++||+.++++++
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998876
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=8.3e-34 Score=229.69 Aligned_cols=110 Identities=44% Similarity=0.809 Sum_probs=104.0
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhc
Q 028055 6 CCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDML 85 (214)
Q Consensus 6 ~~~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~ 85 (214)
....|++++|+||+|||++|+.+|..||..+|..||+.+++ |++.||+.||.++|+|.+++++||+|||.+|++++.+|
T Consensus 50 ~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 128 (159)
T 1h89_C 50 KVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 128 (159)
T ss_dssp TTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred HccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence 34578999999999999999999999998789999999987 99999999999999999999999999999999999999
Q ss_pred CCcHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 86 GNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 86 G~kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
|++|+.||+.|||||+++|||||+.++++++
T Consensus 129 g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 129 GNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999998753
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=8.2e-32 Score=217.95 Aligned_cols=103 Identities=34% Similarity=0.711 Sum_probs=60.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCC-cH
Q 028055 11 GLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGN-RW 89 (214)
Q Consensus 11 ~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~-kW 89 (214)
++++++||+|||++|+++|.+||..+|..||+.+++ |+++||++||.++|+|.+++++||.|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 478999999999999999999998899999999987 9999999999999999999999999999999999999996 69
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 90 SAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 90 ~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..||..|||||+.||++||+.+|.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 9999999999999999999988754
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.1e-24 Score=149.52 Aligned_cols=66 Identities=29% Similarity=0.587 Sum_probs=63.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHH
Q 028055 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEE 75 (214)
Q Consensus 9 k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED 75 (214)
.+++++|+||+|||++|+++|.+||..+|..||+.|++ |+++||++||.++|+|.+++++||.|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 57899999999999999999999998899999999997 9999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.85 E-value=4.4e-22 Score=155.51 Aligned_cols=74 Identities=32% Similarity=0.705 Sum_probs=50.5
Q ss_pred hchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCC-cHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 40 LPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 40 Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~-kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
||+.+++ |++.||+.||.++|+|.+++++||+|||++|+++|++||. +|..||..|||||..||++||+.+|.+
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 7888887 9999999999999999999999999999999999999996 699999999999999999999988754
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.81 E-value=3.3e-20 Score=158.24 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=91.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC-----CcchhchhhCCCCCccccchhhhhcccCCCC------------------
Q 028055 10 MGLKKGPWTPEEDRILIVHIKKHGHP-----NWRALPKQAGLLRCGKSCRLRWINYLRPDIK------------------ 66 (214)
Q Consensus 10 ~~l~kg~WT~EED~~L~~~v~~~g~~-----nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~------------------ 66 (214)
..+++++||+|||++|+++|+++|.. .|..||+.|++ ||+.|||.||+.+|++.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 46889999999999999999999754 39999999998 9999999999999999997
Q ss_pred -----------CCCCCHHHHHHHHHHHHh-c--------------------------------CC---------------
Q 028055 67 -----------RGNFSKEEEETIINLHDM-L--------------------------------GN--------------- 87 (214)
Q Consensus 67 -----------kg~WT~EED~~Ll~l~~~-~--------------------------------G~--------------- 87 (214)
+..||.+||-.|...+++ | |.
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 899999999999998876 1 11
Q ss_pred ----------cHHHHHhhCCCCCHHHHHHHHHHHhHHH
Q 028055 88 ----------RWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 88 ----------kW~~IA~~lpgRt~~~~knrw~~~lkk~ 115 (214)
.|.+||+.+|+||.+++|+||+.+|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988765
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-20 Score=130.75 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=47.4
Q ss_pred cchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHh
Q 028055 53 CRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHL 112 (214)
Q Consensus 53 cr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~l 112 (214)
.--||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 999999999998654
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.75 E-value=3.2e-19 Score=138.56 Aligned_cols=82 Identities=16% Similarity=0.342 Sum_probs=77.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhh----CCCCCccccchhhhhccc-----CCCCCC-CCCHHHHHHH
Q 028055 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQA----GLLRCGKSCRLRWINYLR-----PDIKRG-NFSKEEEETI 78 (214)
Q Consensus 9 k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~----~~~Rt~~qcr~Rw~~~L~-----p~i~kg-~WT~EED~~L 78 (214)
+...++++||+|||+.|+.+|++||..+|..|++.+ ++ ||+.+|++||+++++ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 467899999999999999999999988999999985 55 999999999999999 999999 9999999999
Q ss_pred HHHHHhcCCcHHH
Q 028055 79 INLHDMLGNRWSA 91 (214)
Q Consensus 79 l~l~~~~G~kW~~ 91 (214)
+.++..+|++|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999976
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=6.6e-19 Score=120.56 Aligned_cols=57 Identities=26% Similarity=0.521 Sum_probs=54.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCC
Q 028055 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIK 66 (214)
Q Consensus 9 k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~ 66 (214)
.+.+++++||+|||++|+++|.+||..+|..||+.+++ |++.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 46899999999999999999999998899999999998 9999999999999999875
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=119.96 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=54.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHHHHH
Q 028055 60 YLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKAA 117 (214)
Q Consensus 60 ~L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk~~~ 117 (214)
+|+|.+++++||.|||++|++++++||++|..||. ++|||+.|||+||+.+|++.+.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhc
Confidence 79999999999999999999999999999999999 8899999999999999988763
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.74 E-value=7.4e-19 Score=117.02 Aligned_cols=52 Identities=48% Similarity=0.874 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCC
Q 028055 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64 (214)
Q Consensus 12 l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~ 64 (214)
|++|+||+|||++|+++|.+||..+|..||+.+++ |+++||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 68999999999999999999997799999999987 99999999999999985
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.72 E-value=3.1e-18 Score=133.18 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=72.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhh----CCCCCccccchhhhhcc-----cCCCCCCCCCHHH-HHHH
Q 028055 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQA----GLLRCGKSCRLRWINYL-----RPDIKRGNFSKEE-EETI 78 (214)
Q Consensus 9 k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~----~~~Rt~~qcr~Rw~~~L-----~p~i~kg~WT~EE-D~~L 78 (214)
+...++++||+|||+.|+++|++||.++|..|++.. ++ ||+.||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 345789999999999999999999988999999975 44 99999999999999 8999999999999 8999
Q ss_pred HHHHHhcCCc
Q 028055 79 INLHDMLGNR 88 (214)
Q Consensus 79 l~l~~~~G~k 88 (214)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.72 E-value=2.6e-18 Score=120.83 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=58.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhC--CCCCccccchhhhhcccCCCCCCCCC
Q 028055 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFS 71 (214)
Q Consensus 9 k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~--~~Rt~~qcr~Rw~~~L~p~i~kg~WT 71 (214)
++..++++||+|||++|+.+|.+||..+|..||+.++ + |++.||++||.++|+|.+.+++.+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5678999999999999999999999889999999998 6 999999999999999999998754
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.72 E-value=1.6e-18 Score=115.26 Aligned_cols=52 Identities=31% Similarity=0.653 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCC
Q 028055 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64 (214)
Q Consensus 12 l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~ 64 (214)
+++++||+|||++|+++|.+||..+|..||+.+++ |++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999997799999999997 99999999999999985
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=1.1e-17 Score=118.72 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=53.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 61 LRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 61 L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
++|.+++++||.|||++|++++.+||++|..||.+|||||++|||+||+.++++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999998765
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.3e-17 Score=112.86 Aligned_cols=54 Identities=24% Similarity=0.476 Sum_probs=50.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~ 115 (214)
+|.+++++||+|||++|+++|.+|| ++|..||.+|||||+.||++||+.+|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5789999999999999999999999 69999999999999999999999998754
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.68 E-value=9.6e-18 Score=116.70 Aligned_cols=56 Identities=29% Similarity=0.425 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhC-CCCCccccchhhhhcccCCCC
Q 028055 11 GLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG-LLRCGKSCRLRWINYLRPDIK 66 (214)
Q Consensus 11 ~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~-~~Rt~~qcr~Rw~~~L~p~i~ 66 (214)
..+|++||+|||++|+++|++||..+|..||+.++ .+||+.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999889999999876 239999999999999999875
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.68 E-value=4.3e-17 Score=108.36 Aligned_cols=50 Identities=30% Similarity=0.628 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC-cHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 65 IKRGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 65 i~kg~WT~EED~~Ll~l~~~~G~-kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
+++++||.|||++|+++|.+||. +|..||..|||||+.||++||+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 999999999999999999999998864
No 23
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=2.6e-17 Score=112.79 Aligned_cols=55 Identities=18% Similarity=0.437 Sum_probs=51.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCC
Q 028055 10 MGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDI 65 (214)
Q Consensus 10 ~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i 65 (214)
+.+.+++||+|||++|+++|.+||..+|..||+.+++ |+++||+.||.++|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCCC
Confidence 5789999999999999999999998899999999998 999999999999998753
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=8.8e-17 Score=106.90 Aligned_cols=50 Identities=38% Similarity=0.792 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC-cHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 65 IKRGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 65 i~kg~WT~EED~~Ll~l~~~~G~-kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||..+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998853
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.65 E-value=1.4e-16 Score=106.42 Aligned_cols=49 Identities=29% Similarity=0.384 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHH
Q 028055 66 KRGNFSKEEEETIINLHDMLG-NRWSAIAGRLP--GRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 66 ~kg~WT~EED~~Ll~l~~~~G-~kW~~IA~~lp--gRt~~~~knrw~~~lkk 114 (214)
++++||+|||++|+++|.+|| ++|+.||..|| |||+.||++||++++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999875
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2e-16 Score=108.34 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=49.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.|.+.+++||+|||++|+++|++|| ++|..||++|||||..||++||+.+|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999988753
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=3.8e-16 Score=109.71 Aligned_cols=57 Identities=26% Similarity=0.296 Sum_probs=52.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhcC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHHHH
Q 028055 60 YLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLP--GRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 60 ~L~p~i~kg~WT~EED~~Ll~l~~~~G-~kW~~IA~~lp--gRt~~~~knrw~~~lkk~~ 116 (214)
...|..++++||.|||++|+++|.+|| ++|+.||..|+ |||+.||++||+.+|++.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence 456778899999999999999999999 69999999999 9999999999999998754
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-17 Score=114.89 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=54.8
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCC
Q 028055 7 CEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 69 (214)
Q Consensus 7 ~~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~ 69 (214)
+..|.+++++||+|||++|+++|+.|| .+|..||+ +++ ||++||+.||.++|+|.+++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 467899999999999999999999999 49999999 776 9999999999999999877653
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=8e-17 Score=107.65 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcchhchhhC--CCCCccccchhhhhccc
Q 028055 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG--LLRCGKSCRLRWINYLR 62 (214)
Q Consensus 13 ~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~--~~Rt~~qcr~Rw~~~L~ 62 (214)
++++||+|||++|+++|.+||..+|..||+.++ + ||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 6 999999999999875
No 30
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=110.21 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=51.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
.|.+++++||.|||++|+++|.+|| ++|..||.+|+|||..||++||+.+|++.+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 799999999999999999999999987644
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=114.13 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=55.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcchhchhhCCCCCccccchhhhhcccCCCCCCC
Q 028055 9 KMGLKKGPWTPEEDRILIVHIKKHGH-----PNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 69 (214)
Q Consensus 9 k~~l~kg~WT~EED~~L~~~v~~~g~-----~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~ 69 (214)
++++.+++||+|||++|+++|.+||. .+|..||+.|++ ||+.||+.||++||.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999997 789999999998 9999999999999998877653
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.61 E-value=2.1e-16 Score=107.73 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=47.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcc
Q 028055 10 MGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61 (214)
Q Consensus 10 ~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L 61 (214)
..+.+++||+|||++|+++|++||..+|..||+.++++||++||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4577899999999999999999999999999999993399999999999876
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.5e-16 Score=109.20 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=51.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcC------CcHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLG------NRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G------~kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
+|.+.+++||.|||++|++++.+|| ++|..||.+|+|||..||++||+.+|++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999 789999999999999999999998887644
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=1.4e-15 Score=105.79 Aligned_cols=51 Identities=29% Similarity=0.462 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHHH
Q 028055 65 IKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLP--GRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 65 i~kg~WT~EED~~Ll~l~~~~G-~kW~~IA~~lp--gRt~~~~knrw~~~lkk~ 115 (214)
.++++||+|||++|+++|.+|| ++|+.||+.+| |||+.||++||++++|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4689999999999999999999 58999999866 999999999999998764
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.59 E-value=2e-15 Score=102.76 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=46.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcC-CcHHHHHhhCC-CCCHHHHHHHHHHHh
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLP-GRTDNEIKNVWHTHL 112 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G-~kW~~IA~~lp-gRt~~~~knrw~~~l 112 (214)
...+.+++||+|||++|++++++|| ++|..||++|+ |||+.||++||..++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3457789999999999999999999 89999999999 999999999998764
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.37 E-value=9.8e-17 Score=118.35 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=54.1
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 59 NYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 59 ~~L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
..+.|.+++++||.|||++|++++.+||++|+.||.+|||||++||++||+.++++..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3578899999999999999999999999999999999999999999999999987643
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.57 E-value=7.1e-16 Score=109.23 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=54.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCC
Q 028055 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKR 67 (214)
Q Consensus 8 ~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k 67 (214)
..|.+++++||+|||++|+++|..|| .+|..||+.+++ ||+.||+.||.++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999 599999999998 99999999999999887665
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-15 Score=106.34 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCcccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCC
Q 028055 2 GRAPCCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKR 67 (214)
Q Consensus 2 ~r~~~~~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k 67 (214)
+|+-....|.+++|+||+|||++|+++|++|| ..|..||+.+ + ||+.||+.||.. |....+.
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 46667789999999999999999999999999 5699999999 5 999999999984 5544443
No 39
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.51 E-value=1.7e-14 Score=102.81 Aligned_cols=52 Identities=10% Similarity=0.244 Sum_probs=48.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcC----CcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G----~kW~~IA~~lpgRt~~~~knrw~~~lk 113 (214)
.+.+.+++||.|||++|++++.+|| ++|..||++|||||..+|++||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999 789999999999999999999998864
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.50 E-value=3.7e-15 Score=116.68 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=63.2
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhc
Q 028055 6 CCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDML 85 (214)
Q Consensus 6 ~~~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~ 85 (214)
....|.+++|+||+|||++|+.+|..|| .+|..||+.+++ |++.||+.||.++|++.+..++|+.+- +......
T Consensus 46 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~k 119 (131)
T 3zqc_A 46 NHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSK 119 (131)
T ss_dssp HHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-
T ss_pred hccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhh
Confidence 3457899999999999999999999999 799999999997 999999999999999999999987652 1112233
Q ss_pred CCcHHHHHhhC
Q 028055 86 GNRWSAIAGRL 96 (214)
Q Consensus 86 G~kW~~IA~~l 96 (214)
+.+|+.|++.|
T Consensus 120 k~~~~~i~k~~ 130 (131)
T 3zqc_A 120 KRKAADVPKKL 130 (131)
T ss_dssp -----------
T ss_pred hhhhhhcchhc
Confidence 45688887765
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.48 E-value=2.7e-14 Score=104.07 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchh----hCCCCCccccchhhhhcc-----cCCCCCC-CCCHHHHHHHHHHHHh
Q 028055 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQ----AGLLRCGKSCRLRWINYL-----RPDIKRG-NFSKEEEETIINLHDM 84 (214)
Q Consensus 15 g~WT~EED~~L~~~v~~~g~~nW~~Ia~~----~~~~Rt~~qcr~Rw~~~L-----~p~i~kg-~WT~EED~~Ll~l~~~ 84 (214)
++||+|||+.|+.+|++||.++|..|++. +++ ||+.+|++||++++ .|.+++| +...+...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999998899999996 665 99999999999988 6877765 6778888889888764
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.46 E-value=2.4e-14 Score=108.58 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=67.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhh----CCCCCccccchhhhhcc-----cCCCCCCCCCHHHHHH-
Q 028055 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQA----GLLRCGKSCRLRWINYL-----RPDIKRGNFSKEEEET- 77 (214)
Q Consensus 8 ~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~----~~~Rt~~qcr~Rw~~~L-----~p~i~kg~WT~EED~~- 77 (214)
.+...++++||+|||+.|+.+|++||..+|..|++.+ ++ ||+.+|++||++++ +|.+++|.-++.|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 3567899999999999999999999988999999975 44 99999999999999 6999999888877665
Q ss_pred HHHHHHhcCC
Q 028055 78 IINLHDMLGN 87 (214)
Q Consensus 78 Ll~l~~~~G~ 87 (214)
+++++..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.46 E-value=3.8e-14 Score=102.34 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=50.2
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhc
Q 028055 5 PCCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINY 60 (214)
Q Consensus 5 ~~~~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~ 60 (214)
..+.+....+++||+|||++|+++|++|| .+|..||+++++ ||+.||+.||.++
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 9 LAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred cCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 34567778899999999999999999999 999999999998 9999999999998
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.44 E-value=7.8e-14 Score=100.73 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=45.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 028055 63 PDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTH 111 (214)
Q Consensus 63 p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~ 111 (214)
+...+++||.|||++|++++++||++|..||++|+|||..||++||..+
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3456899999999999999999999999999999999999999999654
No 45
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.6e-13 Score=94.43 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcHHHHH---hhCCCCCHHHHHHHHHHHhHH
Q 028055 65 IKRGNFSKEEEETIINLHDMLGNRWSAIA---GRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 65 i~kg~WT~EED~~Ll~l~~~~G~kW~~IA---~~lpgRt~~~~knrw~~~lkk 114 (214)
-++.+||+|||+.|++.|++||.+|+.|+ ..++|||..+||+||+++.|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 567999999999999998765
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.41 E-value=3.6e-13 Score=98.09 Aligned_cols=49 Identities=29% Similarity=0.522 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHhcCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHHHH
Q 028055 68 GNFSKEEEETIINLHDMLGN-RWSAIAGR----LPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 68 g~WT~EED~~Ll~l~~~~G~-kW~~IA~~----lpgRt~~~~knrw~~~lkk~~ 116 (214)
.+||.|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999997 99999996 899999999999999987643
No 47
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.40 E-value=3e-13 Score=105.15 Aligned_cols=53 Identities=25% Similarity=0.501 Sum_probs=49.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+..++++||+|||++|+++|.+||.+|..||..|||||..||+.||+.+|..
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 58 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAP 58 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTST
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccc
Confidence 45788999999999999999999999999999999999999999999988754
No 48
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.40 E-value=3.6e-13 Score=101.23 Aligned_cols=50 Identities=38% Similarity=0.816 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-cHHHHHhhCCCCCHHHHHHHHHHHhH
Q 028055 64 DIKRGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 64 ~i~kg~WT~EED~~Ll~l~~~~G~-kW~~IA~~lpgRt~~~~knrw~~~lk 113 (214)
++++|+||+|||++|+++|.+||. +|..||..|||||..||+.||+.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence 368999999999999999999996 69999999999999999999998874
No 49
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-14 Score=104.91 Aligned_cols=54 Identities=26% Similarity=0.467 Sum_probs=50.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccC
Q 028055 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRP 63 (214)
Q Consensus 8 ~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p 63 (214)
.-+++.+|+||+|||++|+++|..|| .+|..||+.+++ ||+.||+.||.++|+.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 46789999999999999999999999 589999999998 9999999999999864
No 50
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.38 E-value=5e-13 Score=103.66 Aligned_cols=55 Identities=29% Similarity=0.466 Sum_probs=50.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhcCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHH
Q 028055 60 YLRPDIKRGNFSKEEEETIINLHDMLGN-RWSAIAGR----LPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 60 ~L~p~i~kg~WT~EED~~Ll~l~~~~G~-kW~~IA~~----lpgRt~~~~knrw~~~lkk 114 (214)
-+.+..++++||.|||+.|+++|++||. +|+.|+.. |+|||+++||+||+++++.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3566788999999999999999999997 99999998 4999999999999999975
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.37 E-value=2.7e-13 Score=115.71 Aligned_cols=54 Identities=26% Similarity=0.489 Sum_probs=48.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCc------HHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 63 PDIKRGNFSKEEEETIINLHDMLGNR------WSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 63 p~i~kg~WT~EED~~Ll~l~~~~G~k------W~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
+.+++++||+|||++|+++|++||++ |..||+.|||||+++||+||+.+|++++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhc
Confidence 46789999999999999999999986 9999999999999999999999998875
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.37 E-value=7.8e-13 Score=100.27 Aligned_cols=54 Identities=26% Similarity=0.410 Sum_probs=48.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCC-cHHHHHhhC----CCCCHHHHHHHHHHHhHHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLGN-RWSAIAGRL----PGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G~-kW~~IA~~l----pgRt~~~~knrw~~~lkk~ 115 (214)
.+..++++||.|||+.|+++|++||. +|+.|+..+ +|||+++||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34678899999999999999999997 999999965 8999999999999998753
No 53
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=1.4e-13 Score=98.07 Aligned_cols=55 Identities=15% Similarity=0.391 Sum_probs=49.8
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhC---CCCcchhchhhCCCCCccccchhhhhccc
Q 028055 7 CEKMGLKKGPWTPEEDRILIVHIKKHG---HPNWRALPKQAGLLRCGKSCRLRWINYLR 62 (214)
Q Consensus 7 ~~k~~l~kg~WT~EED~~L~~~v~~~g---~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~ 62 (214)
-+++...+++||++||++|+.+++.|| ..+|..||+.+|+ ||+.||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 356778999999999999999999999 3589999999998 999999999998764
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.33 E-value=2.2e-12 Score=95.80 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcC----CcHHHHHhhCCCCCHHHHHHHHHHHhHHH
Q 028055 66 KRGNFSKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 66 ~kg~WT~EED~~Ll~l~~~~G----~kW~~IA~~lpgRt~~~~knrw~~~lkk~ 115 (214)
.+++||.|||++|++++.+|| ++|..||+.|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 78999999999999999999999988664
No 55
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.32 E-value=1.5e-13 Score=103.97 Aligned_cols=57 Identities=30% Similarity=0.570 Sum_probs=51.8
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCC
Q 028055 6 CCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64 (214)
Q Consensus 6 ~~~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~ 64 (214)
....|++++|+||+|||++|+.+|..|| .+|..||+.+++ |++.||+.||..+++..
T Consensus 45 ~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 45 NYINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKN-RSDNNIRNRWMMIARHR 101 (107)
T ss_dssp HHSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSS-SCHHHHHHHHHHHHHHH
T ss_pred HHHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCC-CCHHHHHHHHHHHHhhH
Confidence 3457899999999999999999999999 699999999988 99999999999877653
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.29 E-value=3.9e-12 Score=98.78 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=48.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLGN-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G~-kW~~IA~~----lpgRt~~~~knrw~~~lkk~ 115 (214)
....++++||.|||+.|+++|++||. +|+.|+.. |+|||..+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999996 99999996 48999999999999998764
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.17 E-value=5.8e-11 Score=87.99 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=59.7
Q ss_pred CccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhC-----CCCCHHHHHHHHHHHhHHHHHH
Q 028055 49 CGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRL-----PGRTDNEIKNVWHTHLKKKAAA 118 (214)
Q Consensus 49 t~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~l-----pgRt~~~~knrw~~~lkk~~~~ 118 (214)
.+.-+.++|.++|.| ++||.||+..|++|+++||.+|..|+.++ ++||..+||+||..+.++.+..
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 356789999999987 89999999999999999999999999999 5899999999999998876643
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.4e-10 Score=79.37 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 028055 66 KRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 66 ~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lk 113 (214)
..++||+||++++++++.+||.+|..||..|||||..+|..+|....|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.08 E-value=2.7e-11 Score=89.89 Aligned_cols=48 Identities=10% Similarity=0.297 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcchhchhhCCCCCccccchhhhhcc
Q 028055 13 KKGPWTPEEDRILIVHIKKHG---HPNWRALPKQAGLLRCGKSCRLRWINYL 61 (214)
Q Consensus 13 ~kg~WT~EED~~L~~~v~~~g---~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L 61 (214)
.+++||+|||++|..++..|| ...|..||+.+|+ ||+.||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 467999999999999999997 4679999999998 99999999998864
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.97 E-value=9.2e-10 Score=77.95 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcC----CcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 64 DIKRGNFSKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 64 ~i~kg~WT~EED~~Ll~l~~~~G----~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..+.+.||.||+++|.+++.+|+ ++|..||+.+ |||..+|++||..+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 6899999998 99999999999877543
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.86 E-value=3.2e-09 Score=89.94 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 66 KRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 66 ~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..++||.||++++++++.+||++|..||+.+++||..|||++|+.+.|+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999988765
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=74.16 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=45.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhc
Q 028055 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINY 60 (214)
Q Consensus 8 ~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~ 60 (214)
++..-..++||+||++++.+++.+|| .+|..||+.+++ |+..||..+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 44456678999999999999999999 799999999998 9999999998654
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.82 E-value=1.2e-09 Score=75.00 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhch---hhCCCCCccccchhhhhccc
Q 028055 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPK---QAGLLRCGKSCRLRWINYLR 62 (214)
Q Consensus 12 l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~---~~~~~Rt~~qcr~Rw~~~L~ 62 (214)
-.+++||+|||+.|++.|++||. +|..|+. .+.+ ||...+++||++..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 47889999999999999999995 9999994 4555 999999999998664
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.69 E-value=2.9e-08 Score=70.35 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 67 RGNFSKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~G----~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..+||.+|+++|.++...|+ .+|..||..+||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999998 4799999999999999999999877543
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.67 E-value=6.7e-09 Score=73.49 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---CCCcchhchhhCCCCCccccchhhhhccc
Q 028055 11 GLKKGPWTPEEDRILIVHIKKHG---HPNWRALPKQAGLLRCGKSCRLRWINYLR 62 (214)
Q Consensus 11 ~l~kg~WT~EED~~L~~~v~~~g---~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~ 62 (214)
..+.+.||.|||++|.+++.+|+ ...|..||+.+ + |+..+|+.||.....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHH
Confidence 45678999999999999999998 35799999998 4 999999999987654
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.59 E-value=6.2e-08 Score=65.93 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhc--------CCc-HHHHHh-hCCCCCHHHHHHHHHHHhH
Q 028055 67 RGNFSKEEEETIINLHDML--------GNR-WSAIAG-RLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~--------G~k-W~~IA~-~lpgRt~~~~knrw~~~lk 113 (214)
+.+||.|||.+|++.|.++ |++ |.++++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999987664
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.59 E-value=1.4e-08 Score=69.18 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcchhch-hhCCCCCccccchhhhhccc
Q 028055 14 KGPWTPEEDRILIVHIKKH--------GHPNWRALPK-QAGLLRCGKSCRLRWINYLR 62 (214)
Q Consensus 14 kg~WT~EED~~L~~~v~~~--------g~~nW~~Ia~-~~~~~Rt~~qcr~Rw~~~L~ 62 (214)
|.+||+|||++|+.+|..| |..-|..+++ .++. +|-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 5789999999999999999 5446999999 6876 999999999999875
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.56 E-value=4.4e-08 Score=91.17 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 68 GNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 68 g~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+||.||-+++++++.+||..|..||..++.||..|||+.|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999865543
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=8.4e-08 Score=67.98 Aligned_cols=48 Identities=17% Similarity=0.377 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcchhchhhCCCCCccccchhhhhccc
Q 028055 14 KGPWTPEEDRILIVHIKKHGH---PNWRALPKQAGLLRCGKSCRLRWINYLR 62 (214)
Q Consensus 14 kg~WT~EED~~L~~~v~~~g~---~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~ 62 (214)
...||.+|+++|..++..|+. .+|..||..+|+ |+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 458999999999999999975 479999999998 999999999987654
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.40 E-value=1.4e-07 Score=79.84 Aligned_cols=50 Identities=24% Similarity=0.421 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhccc
Q 028055 11 GLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLR 62 (214)
Q Consensus 11 ~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~ 62 (214)
.....+||+||++++++++.+|| .+|..||+.+++ ||..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34577999999999999999999 899999999998 999999999998764
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.35 E-value=6.3e-07 Score=65.66 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHhcCC---cHHHHHhhCCCCCHHHHHHHHHHHhH
Q 028055 68 GNFSKEEEETIINLHDMLGN---RWSAIAGRLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 68 g~WT~EED~~Ll~l~~~~G~---kW~~IA~~lpgRt~~~~knrw~~~lk 113 (214)
--||.|||..||...++-|. .|+.||..|.+|+.+||++||+.+++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 35999999999999999996 79999999999999999999998874
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.26 E-value=2.1e-06 Score=75.80 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhh-------------------------------------
Q 028055 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRW------------------------------------- 57 (214)
Q Consensus 15 g~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw------------------------------------- 57 (214)
+.||..+...++.++.+||..+|..||..+++ ++...++..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999986 8877774322
Q ss_pred -------------hhcccCCCCCCCCCHHHHHHHHHHHHhcCC----cHHHHHh------------hCCCCCHHHHHHHH
Q 028055 58 -------------INYLRPDIKRGNFSKEEEETIINLHDMLGN----RWSAIAG------------RLPGRTDNEIKNVW 108 (214)
Q Consensus 58 -------------~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~----kW~~IA~------------~lpgRt~~~~knrw 108 (214)
.+...+..+...||++||..|+-++.+||- .|..|.. .+..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 000012334568999999999999999994 6999962 45679999999999
Q ss_pred HHHhHHHH
Q 028055 109 HTHLKKKA 116 (214)
Q Consensus 109 ~~~lkk~~ 116 (214)
.++++-..
T Consensus 270 ~tLi~~ie 277 (304)
T 1ofc_X 270 NTLITLIE 277 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99986544
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=3.2e-06 Score=57.93 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=45.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHh-hCCCCCHHHHHHHHHHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLGNRWSAIAG-RLPGRTDNEIKNVWHTH 111 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~-~lpgRt~~~~knrw~~~ 111 (214)
.|.+...+||+||-++..+++.+||..|..|++ .||+||..+|...|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 477888999999999999999999999999999 58999999999887643
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.54 E-value=1.5e-07 Score=65.46 Aligned_cols=44 Identities=14% Similarity=0.365 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---cHHHHHhhCCCCCHHHHHHHHHHHhH
Q 028055 69 NFSKEEEETIINLHDMLGN---RWSAIAGRLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 69 ~WT~EED~~Ll~l~~~~G~---kW~~IA~~lpgRt~~~~knrw~~~lk 113 (214)
-||.|||..|+..+++-|. .|+.||..| |||.+||++||+.+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999997 799999999 9999999999998874
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.19 E-value=5.5e-06 Score=61.11 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=51.8
Q ss_pred chhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCC-----CCCHHHHHHHHHHHhHHHHH
Q 028055 54 RLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLP-----GRTDNEIKNVWHTHLKKKAA 117 (214)
Q Consensus 54 r~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lp-----gRt~~~~knrw~~~lkk~~~ 117 (214)
.+.|..+|.. ..||.||-..|++|+++|+-+|..|+.++. +||..++|.||..+.++.+.
T Consensus 21 ~eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 21 EQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp HHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556667653 689999999999999999999999999873 79999999999999877664
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.18 E-value=3.6e-07 Score=64.57 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----cHHHHHhhCCCCCHHHHHHHHH
Q 028055 67 RGNFSKEEEETIINLHDMLGN----RWSAIAGRLPGRTDNEIKNVWH 109 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~G~----kW~~IA~~lpgRt~~~~knrw~ 109 (214)
.++||.+|+++|.++..+|+. +|.+||+.+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999874
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.98 E-value=1.4e-06 Score=61.48 Aligned_cols=44 Identities=11% Similarity=0.304 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CcchhchhhCCCCCccccchhhh
Q 028055 14 KGPWTPEEDRILIVHIKKHGHP---NWRALPKQAGLLRCGKSCRLRWI 58 (214)
Q Consensus 14 kg~WT~EED~~L~~~v~~~g~~---nW~~Ia~~~~~~Rt~~qcr~Rw~ 58 (214)
.+.||.+|+++|..++..|+.. .|.+||..+|+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4589999999999999999753 79999999998 99999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1.2e-05 Score=55.01 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=42.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchh-hCCCCCccccchhhh
Q 028055 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQ-AGLLRCGKSCRLRWI 58 (214)
Q Consensus 9 k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~-~~~~Rt~~qcr~Rw~ 58 (214)
.|.+....||+||-++..+++.+|| .+|..|++. ++. |+..+|..-|.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPN-KETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTT-SCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CcHHHHHHHHh
Confidence 4677888999999999999999999 799999994 887 99999987764
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.77 E-value=4.5e-05 Score=56.26 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 028055 67 RGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTH 111 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~ 111 (214)
...||+||.++..++...||.+|..||..||+||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988644
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.72 E-value=7.8e-05 Score=52.03 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 028055 67 RGNFSKEEEETIINLHDMLGNRWSAIAG-RLPGRTDNEIKNVWHT 110 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~G~kW~~IA~-~lpgRt~~~~knrw~~ 110 (214)
..+||+||-++..+++.+||..|..|++ .||+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5999999999998863
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.60 E-value=3e-05 Score=72.22 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcc
Q 028055 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61 (214)
Q Consensus 12 l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L 61 (214)
....+||.+|-++++.++.+|| .+|..||+.+++ |+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4568999999999999999999 799999999998 99999999987653
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.42 E-value=6.4e-05 Score=55.44 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhC----CCCCccccchhhhhcc
Q 028055 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG----LLRCGKSCRLRWINYL 61 (214)
Q Consensus 12 l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~----~~Rt~~qcr~Rw~~~L 61 (214)
|...+||.||++.|..++++|+ ..|..|+.... ..|+..+++.||....
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999999 89999999983 2399999999996643
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.27 E-value=0.00021 Score=51.28 Aligned_cols=48 Identities=17% Similarity=0.473 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC----------CcHHHHHhhCC----CCCHHHHHHHHHHHhHH
Q 028055 67 RGNFSKEEEETIINLHDMLG----------NRWSAIAGRLP----GRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~G----------~kW~~IA~~lp----gRt~~~~knrw~~~lkk 114 (214)
...||.+|-.+||+++..+. ..|..||..|. .||..||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999987632 14999999862 79999999999887654
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.22 E-value=0.00015 Score=50.51 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcchhch-hhCCCCCccccchhhh
Q 028055 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPK-QAGLLRCGKSCRLRWI 58 (214)
Q Consensus 13 ~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~-~~~~~Rt~~qcr~Rw~ 58 (214)
....||+||-++..+++.+|| .+|..|++ .+++ |+..+|..-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CCHHHHHHHHH
Confidence 345899999999999999999 79999999 5887 99999987774
No 85
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.20 E-value=0.001 Score=60.14 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhh-------------------------------------
Q 028055 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRW------------------------------------- 57 (214)
Q Consensus 15 g~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw------------------------------------- 57 (214)
+.||.-+=..++.++.+||-.+-..||..++++++...++ +|
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999888999999997337776665 22
Q ss_pred -----hhc------c----cCC-CCCCCCCHHHHHHHHHHHHhcC----CcHHHHHhh------------CCCCCHHHHH
Q 028055 58 -----INY------L----RPD-IKRGNFSKEEEETIINLHDMLG----NRWSAIAGR------------LPGRTDNEIK 105 (214)
Q Consensus 58 -----~~~------L----~p~-i~kg~WT~EED~~Ll~l~~~~G----~kW~~IA~~------------lpgRt~~~~k 105 (214)
..| | .+. .+...||.+||..||-++.+|| +.|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 000 1 111 1345799999999999999999 469998433 4679999999
Q ss_pred HHHHHHhHHH
Q 028055 106 NVWHTHLKKK 115 (214)
Q Consensus 106 nrw~~~lkk~ 115 (214)
.|..+|++-.
T Consensus 283 rRc~tLi~~I 292 (374)
T 2y9y_A 283 RRGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998653
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.20 E-value=0.00015 Score=53.43 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhh
Q 028055 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWI 58 (214)
Q Consensus 14 kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~ 58 (214)
...||+||.++..++...|| .+|..|++.++. |+..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHh
Confidence 46899999999999999999 799999999988 99999988774
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.01 E-value=0.0041 Score=51.12 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcC-CcHHHHHh--hC------------CCCCHHHHHHHHHHHhHH
Q 028055 69 NFSKEEEETIINLHDMLG-NRWSAIAG--RL------------PGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 69 ~WT~EED~~Ll~l~~~~G-~kW~~IA~--~l------------pgRt~~~~knrw~~~lkk 114 (214)
.||.+||..|+..+.+|| ++|.+|-. .| ..++...|..|...+|+-
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 599999999999999999 89999966 21 124567899998877764
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.83 E-value=0.00019 Score=51.52 Aligned_cols=49 Identities=22% Similarity=0.506 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCcchhchhhC---CCCCccccchhhhhcc
Q 028055 13 KKGPWTPEEDRILIVHIKKHGH---------PNWRALPKQAG---LLRCGKSCRLRWINYL 61 (214)
Q Consensus 13 ~kg~WT~EED~~L~~~v~~~g~---------~nW~~Ia~~~~---~~Rt~~qcr~Rw~~~L 61 (214)
+...||.+|-..|+++...... .-|..||..|. ..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999876421 15999999853 4599999999997653
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.69 E-value=0.00028 Score=48.95 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC--CcchhchhhCCCCCccccchhhhhcc
Q 028055 14 KGPWTPEEDRILIVHIKKHGHP--NWRALPKQAGLLRCGKSCRLRWINYL 61 (214)
Q Consensus 14 kg~WT~EED~~L~~~v~~~g~~--nW~~Ia~~~~~~Rt~~qcr~Rw~~~L 61 (214)
--.||.|||..|+..+++-|.. .|..||+.+ + |++.|+..|++..+
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLM 61 (70)
Confidence 3479999999999999999953 799999988 4 99999999998754
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.60 E-value=0.0012 Score=48.20 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCcchhchhhCCCCCccccchhhhh
Q 028055 13 KKGPWTPEEDRILIVHIKKHGH--PNWRALPKQAGLLRCGKSCRLRWIN 59 (214)
Q Consensus 13 ~kg~WT~EED~~L~~~v~~~g~--~nW~~Ia~~~~~~Rt~~qcr~Rw~~ 59 (214)
+--.||.|||..|+...++-|. ..|..||+.+++ |++.|+++|++.
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 3447999999999999999985 379999999987 999999999976
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.28 E-value=0.051 Score=37.14 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCc---HHHHHhhC--CCCCHHHHHHHHHHH
Q 028055 65 IKRGNFSKEEEETIINLHDMLGNR---WSAIAGRL--PGRTDNEIKNVWHTH 111 (214)
Q Consensus 65 i~kg~WT~EED~~Ll~l~~~~G~k---W~~IA~~l--pgRt~~~~knrw~~~ 111 (214)
-.+-.||.|..+..++++.++|.. +..|.+.| +|.|..+|+++.+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345689999999999999999954 78998875 799999999987544
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.14 E-value=0.019 Score=47.13 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=33.1
Q ss_pred CcccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhchh
Q 028055 4 APCCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQ 43 (214)
Q Consensus 4 ~~~~~k~~l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~ 43 (214)
-|++.++......||.+||..|+..|.+||.++|..|-..
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3555666666678999999999999999999999998553
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.73 E-value=0.017 Score=42.36 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhC----CCCCccccchhhhhcc
Q 028055 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG----LLRCGKSCRLRWINYL 61 (214)
Q Consensus 12 l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~----~~Rt~~qcr~Rw~~~L 61 (214)
|+...||.||...|..++++|. ..|..|+.... ..|+..+.++||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999 89999998864 2388888888886543
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.24 E-value=0.077 Score=46.65 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-cHHHHHhhCCCCCHHHHHHHHHHHhH
Q 028055 67 RGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~G~-kW~~IA~~lpgRt~~~~knrw~~~lk 113 (214)
-+.||..+....+.+..+||. .|..||..|+|+|..+|+..+.....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 357999999999999999994 79999999999999999877665554
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.82 E-value=0.39 Score=41.47 Aligned_cols=28 Identities=32% Similarity=0.655 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhch
Q 028055 15 GPWTPEEDRILIVHIKKHGHPNWRALPK 42 (214)
Q Consensus 15 g~WT~EED~~L~~~v~~~g~~nW~~Ia~ 42 (214)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3699999999999999999999999954
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=86.35 E-value=0.64 Score=31.62 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=35.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC---cchhchhhCC-CCCccccchhhhhc
Q 028055 12 LKKGPWTPEEDRILIVHIKKHGHPN---WRALPKQAGL-LRCGKSCRLRWINY 60 (214)
Q Consensus 12 l~kg~WT~EED~~L~~~v~~~g~~n---W~~Ia~~~~~-~Rt~~qcr~Rw~~~ 60 (214)
..+-.||+|..++.+.+|...| .+ +..|.+.|+. +.|..++.-|.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999 44 5677776653 25667776665544
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.33 E-value=3.7 Score=35.30 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CcHHHHHh--hCCCCCHHHHHHHHHHHhHH
Q 028055 67 RGNFSKEEEETIINLHDMLG---NRWSAIAG--RLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~G---~kW~~IA~--~lpgRt~~~~knrw~~~lkk 114 (214)
+++||.-|-..|++.+.+|| .+|..|+. .|+.++...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 57999999999999887754
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=78.92 E-value=4.4 Score=26.04 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 73 EEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 73 EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
+.+..++.++-..|-.+.+||..+ |-+...|+.+.+..+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666777778899999999999 99999999987666544
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=75.06 E-value=6.4 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh----cCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 74 EEETIINLHDM----LGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 74 ED~~Ll~l~~~----~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+..++.+.-- .|-.+.+||..+ |-|...|+.+.+..+++
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 44455555554 678899999999 99999999987666544
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=73.25 E-value=6.3 Score=25.61 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=30.2
Q ss_pred HHHHHHHHHH----hcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 74 EEETIINLHD----MLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 74 ED~~Ll~l~~----~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+..++.+.- ..|-.+.+||..+ |-|...|+.+.+..+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4445555554 3578899999999 99999999987766544
No 101
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=70.49 E-value=15 Score=25.25 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 74 EEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 74 ED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+..++.++...|-.-.+||..| |-+...|+.+.+..+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45566777777788899999999 99999999998776654
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=66.85 E-value=4.7 Score=29.91 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=28.8
Q ss_pred HHHHHHhcCC--------cHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 78 IINLHDMLGN--------RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 78 Ll~l~~~~G~--------kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
|..+|...|+ .|..||..|.--....+|..|..+|-.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 7777777774 799999988444478999999888744
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=64.04 E-value=12 Score=27.12 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=26.4
Q ss_pred HHHHHHHhcCC--------cHHHHHhhCCCCC----HHHHHHHHHHHhHH
Q 028055 77 TIINLHDMLGN--------RWSAIAGRLPGRT----DNEIKNVWHTHLKK 114 (214)
Q Consensus 77 ~Ll~l~~~~G~--------kW~~IA~~lpgRt----~~~~knrw~~~lkk 114 (214)
.|..+|...|+ .|..||..|.--. ...+|..|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 36666777773 7999999983322 46788888777643
No 104
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=63.10 E-value=7.4 Score=29.31 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=28.2
Q ss_pred HHHHHHhcCC--------cHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 78 IINLHDMLGN--------RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 78 Ll~l~~~~G~--------kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
|..+|.+.|+ .|..||..|.--....+|..|..+|-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 6667777774 699999988444488999999887754
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=63.04 E-value=10 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHHHHhcCC--------cHHHHHhhCCCCC----HHHHHHHHHHHhHH
Q 028055 77 TIINLHDMLGN--------RWSAIAGRLPGRT----DNEIKNVWHTHLKK 114 (214)
Q Consensus 77 ~Ll~l~~~~G~--------kW~~IA~~lpgRt----~~~~knrw~~~lkk 114 (214)
.|..+|...|+ +|..||..|.--. ...+|..|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 37777777774 7999999983222 56889999888754
No 106
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=62.16 E-value=21 Score=23.27 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 70 FSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 70 WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.|+.| ..++.++ ..|-.-.+||..+ |-+...|+.+.+..+++
T Consensus 17 L~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34444 4444555 6788889999999 89999999987766544
No 107
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=57.77 E-value=21 Score=24.26 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh----cCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 74 EEETIINLHDM----LGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 74 ED~~Ll~l~~~----~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+..++.+.-- .|-.+.+||..+ |-|...|+.+-+..+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 44555555554 577899999999 99999999987665544
No 108
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.63 E-value=15 Score=27.40 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=26.7
Q ss_pred HHHHHHHhcCC--------cHHHHHhhCCCCC----HHHHHHHHHHHhHH
Q 028055 77 TIINLHDMLGN--------RWSAIAGRLPGRT----DNEIKNVWHTHLKK 114 (214)
Q Consensus 77 ~Ll~l~~~~G~--------kW~~IA~~lpgRt----~~~~knrw~~~lkk 114 (214)
.|..+|...|+ +|..||..|.-.+ ...+|..|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 36677777774 7999999983222 35788888777644
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=57.61 E-value=15 Score=27.45 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHHHhcCC--------cHHHHHhhCCCCC----HHHHHHHHHHHhHH
Q 028055 77 TIINLHDMLGN--------RWSAIAGRLPGRT----DNEIKNVWHTHLKK 114 (214)
Q Consensus 77 ~Ll~l~~~~G~--------kW~~IA~~lpgRt----~~~~knrw~~~lkk 114 (214)
.|..+|..+|+ .|.+||..|.--+ ...+|..|..+|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 36677777774 7999999983322 45788888877754
No 110
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.49 E-value=20 Score=24.93 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 69 ~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..|+.|-+.|. ++ ..|-.-.+||..+ |-+...|+.+.+..+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666655554 44 7788889999999 99999999987666544
No 111
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=57.30 E-value=23 Score=26.91 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=25.2
Q ss_pred HhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 83 DMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 83 ~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
...|-...+||..+ |-+...|+++.+..+++
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34577899999999 99999999988766654
No 112
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=57.30 E-value=20 Score=24.17 Aligned_cols=43 Identities=28% Similarity=0.277 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 69 ~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..|+.|-+.|. ++ ..|-.-.+||..+ |-+...|+++.+..+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666655544 44 6788889999999 99999999987766544
No 113
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=57.00 E-value=19 Score=32.33 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHhcCC-cHHHHHhhCC-CCCHHHHHHHHH
Q 028055 68 GNFSKEEEETIINLHDMLGN-RWSAIAGRLP-GRTDNEIKNVWH 109 (214)
Q Consensus 68 g~WT~EED~~Ll~l~~~~G~-kW~~IA~~lp-gRt~~~~knrw~ 109 (214)
+.||.-+=..++.+..+||. .-..||..|. |.|..+|+....
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~ 167 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAK 167 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHH
Confidence 57999999999999999995 5899999997 999999995433
No 114
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.78 E-value=26 Score=22.42 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 68 GNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 68 g~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
...|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+.+...++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567766665554 4 6677889999999 89999999887765543
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.67 E-value=30 Score=23.96 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 66 KRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 66 ~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.....|..|-+.|.-++ .|..-.+||..| |-+...|+++...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34567887777665554 788889999999 99999999998777654
No 116
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.27 E-value=4.7 Score=29.92 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------CCcchhchhhCCCCCccccchhhhhcccC
Q 028055 24 ILIVHIKKHGH-------PNWRALPKQAGLLRCGKSCRLRWINYLRP 63 (214)
Q Consensus 24 ~L~~~v~~~g~-------~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p 63 (214)
+|..+|.+.|- ..|..||..++. -.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 46667777762 269999999987 4478888999888875
No 117
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=52.51 E-value=35 Score=24.64 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 74 EEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 74 ED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+..++.++...|-...+||..+ |-+...|+.+.+..+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45556667777788899999999 99999999987766544
No 118
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=52.05 E-value=23 Score=25.70 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 69 ~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
.=|..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 12 ~~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 12 SGTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SCSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred chHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3366677888889999999999999999 888877755
No 119
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=51.97 E-value=41 Score=24.37 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=24.9
Q ss_pred hcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 84 MLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 84 ~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..|-...+||..+ |-|...|+++.+..+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567899999999 99999999998776544
No 120
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=50.81 E-value=28 Score=21.52 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 75 EETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 75 D~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
+..++.+ -..|-.-.+||..+ |-+...|+.+.+...++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3445555 35577778999999 99999999987766654
No 121
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=49.75 E-value=21 Score=26.29 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 75 EETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 75 D~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
|..|..+.+..|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 888877755
No 122
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=49.49 E-value=22 Score=26.27 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=28.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 64 DIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 64 ~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
.+-...=|.+ .|..++...|..|..+|+.| |=+..+|..
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred hhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3333344444 46666888999999999999 888877754
No 123
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=49.22 E-value=21 Score=26.35 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=28.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 62 RPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 62 ~p~i~kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
.+.+-...=|.+ .|..++...|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp --CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred CchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 334444444555 46666889999999999999 888877754
No 124
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=48.59 E-value=14 Score=29.58 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=14.9
Q ss_pred CCCCCCCCCHHHHHHHH
Q 028055 63 PDIKRGNFSKEEEETII 79 (214)
Q Consensus 63 p~i~kg~WT~EED~~Ll 79 (214)
|....|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56788999999999886
No 125
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=48.13 E-value=25 Score=26.96 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHhcCC--------cHHHHHhhCC--CC---CHHHHHHHHHHHhHH
Q 028055 77 TIINLHDMLGN--------RWSAIAGRLP--GR---TDNEIKNVWHTHLKK 114 (214)
Q Consensus 77 ~Ll~l~~~~G~--------kW~~IA~~lp--gR---t~~~~knrw~~~lkk 114 (214)
.|..+|...|+ .|.+||..|. .. ....+|..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 36677777774 6999999882 22 256889999887743
No 126
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.67 E-value=23 Score=26.44 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHhcCC--------cHHHHHhhCC--CC---CHHHHHHHHHHHhHH
Q 028055 77 TIINLHDMLGN--------RWSAIAGRLP--GR---TDNEIKNVWHTHLKK 114 (214)
Q Consensus 77 ~Ll~l~~~~G~--------kW~~IA~~lp--gR---t~~~~knrw~~~lkk 114 (214)
.|..+|...|+ .|..||..|. .. ....+|..|..+|-.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777774 7999999982 22 257889999888754
No 127
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.97 E-value=25 Score=26.37 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=49.0
Q ss_pred CCCCCCCHHHH--HHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCCCCCCCCHHHHHHHHHHHHhcCC--
Q 028055 12 LKKGPWTPEED--RILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGN-- 87 (214)
Q Consensus 12 l~kg~WT~EED--~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~~~G~-- 87 (214)
.-+..|.+.+. +.|.++....| .....++. +++ |.-. =-.|..+|.+.|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rG-tpl~~~P~-i~g-k~lD-----------------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQG-ITMDELPL-IGG-CELD-----------------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTT-CCCSSCCE-ETT-EECC-----------------------HHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcC-CCCCCCCc-CCC-Eecc-----------------------HHHHHHHHHHcCcHH
Confidence 34568998876 56778888888 34444443 222 2211 1237777888884
Q ss_pred ------cHHHHHhhC--CCC---CHHHHHHHHHHHhH
Q 028055 88 ------RWSAIAGRL--PGR---TDNEIKNVWHTHLK 113 (214)
Q Consensus 88 ------kW~~IA~~l--pgR---t~~~~knrw~~~lk 113 (214)
.|..||..| |.- ....+|+.|..+|-
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 799999998 321 24688999987773
No 128
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.66 E-value=9.3 Score=28.76 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHHhCC-------CCcchhchhhCCCCCc----cccchhhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 028055 24 ILIVHIKKHGH-------PNWRALPKQAGLLRCG----KSCRLRWINYLRPDIKRGNFSKEEEETIINLHD 83 (214)
Q Consensus 24 ~L~~~v~~~g~-------~nW~~Ia~~~~~~Rt~----~qcr~Rw~~~L~p~i~kg~WT~EED~~Ll~l~~ 83 (214)
+|..+|.+.|- ..|..||..++...+. ...+..|.++|.|-- ..+.+|-..|.+-+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 57788888873 3699999999764432 346788999987632 377788888776554
No 129
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=46.12 E-value=53 Score=25.47 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 76 ETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 76 ~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..++.++-..|-...+||..+ |-|...|+.+.+..+++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 334444445577899999999 99999999987666544
No 130
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=45.74 E-value=11 Score=26.68 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=24.6
Q ss_pred HHHHHHhcC--------CcHHHHHhhCCCC----CHHHHHHHHHHHhH
Q 028055 78 IINLHDMLG--------NRWSAIAGRLPGR----TDNEIKNVWHTHLK 113 (214)
Q Consensus 78 Ll~l~~~~G--------~kW~~IA~~lpgR----t~~~~knrw~~~lk 113 (214)
|..+|...| +.|.+||..|.-- ....+|+.|..+|-
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 666666666 3799999987221 14678888876653
No 131
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.65 E-value=15 Score=27.80 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=24.5
Q ss_pred hcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 84 MLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 84 ~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..|-...+||..+ |-|...|+++.+..+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999998776654
No 132
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=45.37 E-value=28 Score=26.52 Aligned_cols=43 Identities=7% Similarity=0.026 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 73 EEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 73 EED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
+-|..|+.+.++.| -.+.+||+.+ |-|...|+.|...+.+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45778888888777 4799999999 9999999999877665443
No 133
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=43.78 E-value=17 Score=26.27 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=27.0
Q ss_pred HHHHHHHhcC--------CcHHHHHhhCCC--C---CHHHHHHHHHHHhHH
Q 028055 77 TIINLHDMLG--------NRWSAIAGRLPG--R---TDNEIKNVWHTHLKK 114 (214)
Q Consensus 77 ~Ll~l~~~~G--------~kW~~IA~~lpg--R---t~~~~knrw~~~lkk 114 (214)
.|..+|...| +.|.+||..|.- . ....+|..|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3667777777 379999998732 1 236789999888744
No 134
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=43.34 E-value=27 Score=23.89 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 70 FSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 70 WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.|+.|-+.| .++ ..|-.-.+||..| |-+...|+++.+..+++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555444 444 5677788999999 99999999987766544
No 135
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.12 E-value=1.1e+02 Score=22.28 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhc------ccCCCC----CCCCCHHHHHHHHHHHH
Q 028055 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINY------LRPDIK----RGNFSKEEEETIINLHD 83 (214)
Q Consensus 14 kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~------L~p~i~----kg~WT~EED~~Ll~l~~ 83 (214)
....|.++-..++.++. .| ..-.+||+.++. + ...-.||.+. +.+... ....+.+..+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lgi--s-~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLRV--S-HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHTC--C-HHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--C-HHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45789888888887774 56 567889999874 3 3334455432 223222 23478888888888887
Q ss_pred hcC-CcHHHHHhhC
Q 028055 84 MLG-NRWSAIAGRL 96 (214)
Q Consensus 84 ~~G-~kW~~IA~~l 96 (214)
+.+ -.-.+|+..+
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 653 2234566554
No 136
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=38.65 E-value=20 Score=28.57 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=18.7
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 028055 10 MGLKKGPWTPEEDRILI--------VHIKKHG 33 (214)
Q Consensus 10 ~~l~kg~WT~EED~~L~--------~~v~~~g 33 (214)
|.-.+|-||+|.|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 34578999999999875 4677776
No 137
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=38.59 E-value=52 Score=20.99 Aligned_cols=34 Identities=12% Similarity=-0.050 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHH
Q 028055 73 EEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNV 107 (214)
Q Consensus 73 EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knr 107 (214)
-|.+.|.++...+|++.++.|+.+ |=+...+..+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 467788899999999999999998 7666555443
No 138
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=37.37 E-value=1e+02 Score=22.11 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 74 EEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 74 ED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+..++.++...|-.-.+||..+ |-|...|+.+.+...++
T Consensus 26 ~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 26 KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556667667788899999999 99999999988766543
No 139
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=37.02 E-value=37 Score=24.53 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 76 ETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 76 ~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
..|-.+....|..|..+|++| |=+..+|..
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 445566778899999999999 878777755
No 140
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=36.73 E-value=80 Score=23.22 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 73 EEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 73 EED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
+-|..|+.+....| -.+.+||+.+ |-+...|..+...+.+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34566777777666 5799999999 8999999999877765433
No 141
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.91 E-value=98 Score=21.76 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 67 RGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 67 kg~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4567887777665433 687889999999 89999999987766654
No 142
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=35.58 E-value=33 Score=24.70 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=26.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhchhhCC
Q 028055 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGL 46 (214)
Q Consensus 12 l~kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~ 46 (214)
.++..+|.|.-..++.++...|...=..||+.++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gv 37 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNI 37 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTC
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCC
Confidence 35778999999988888876673333378888875
No 143
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=35.47 E-value=1.3e+02 Score=22.17 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcc------cCCCC----CCCCCHHHHHHHHHHHH
Q 028055 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYL------RPDIK----RGNFSKEEEETIINLHD 83 (214)
Q Consensus 14 kg~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L------~p~i~----kg~WT~EED~~Ll~l~~ 83 (214)
..+.|.++-..++.++. .| ..-..||+.++. + .+.-.||.+.. .+... ....|.++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s-~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--S-HGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--C-SHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--C-HHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34788888888887774 56 577889999874 3 33344554432 22211 23477777888888876
Q ss_pred hcC-CcHHHHHhhC
Q 028055 84 MLG-NRWSAIAGRL 96 (214)
Q Consensus 84 ~~G-~kW~~IA~~l 96 (214)
+.. -.-.+|+..+
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 543 2234455544
No 144
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=34.52 E-value=66 Score=22.13 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHH
Q 028055 73 EEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNV 107 (214)
Q Consensus 73 EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knr 107 (214)
-|...|.++...+|++-++.|+.| |=+...+..+
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 467788899999998889999999 8777666544
No 145
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=30.22 E-value=75 Score=24.43 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHH
Q 028055 73 EEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 73 EED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~ 115 (214)
+-|..|+.+....| -.+.+||+.+ |-+...|+.|...+.+..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 45667777777766 4799999999 899999999987665443
No 146
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.96 E-value=1.5e+02 Score=20.96 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCC------CCCCCCCHHHHHHHHHHHHhcCCc
Q 028055 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD------IKRGNFSKEEEETIINLHDMLGNR 88 (214)
Q Consensus 15 g~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~------i~kg~WT~EED~~Ll~l~~~~G~k 88 (214)
...|.++-..++.++ .-| ..-..||+.++. +.. .-.||.+..... ......|.+++..|+.+...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~-~~G-~s~~~ia~~lgi--s~~-Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLN-VSLHEMSRKISR--SRH-CIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTT-CCHHHHHHHHTC--CHH-HHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHH-HcC-CCHHHHHHHHCc--CHH-HHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 357888877777766 346 567889998874 333 334454332211 112347888888888874332234
Q ss_pred HHHHHhhCCC--CCHHHHHHHH
Q 028055 89 WSAIAGRLPG--RTDNEIKNVW 108 (214)
Q Consensus 89 W~~IA~~lpg--Rt~~~~knrw 108 (214)
=.+|+..+ | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 57899888 5 5666666544
No 147
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.92 E-value=76 Score=25.77 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 69 ~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
..++.|=+ ++.++ ..|-.-.+||..+ |.+...|+.|-+..+++
T Consensus 197 ~L~~~ere-vl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREKE-ILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHHH-HHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45554444 44555 5788899999999 99999999998766644
No 148
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=29.24 E-value=97 Score=22.86 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHH
Q 028055 73 EEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 73 EED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~ 115 (214)
+-|..|+.+....| -.+.+||+.+ |-+...|..|...+.+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 49 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 34566777777666 4799999999 899999999987765543
No 149
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.08 E-value=36 Score=26.05 Aligned_cols=54 Identities=28% Similarity=0.451 Sum_probs=33.4
Q ss_pred HHHHHHHHhCC-------CCcchhchhhCCCCC----ccccchhhhhcccC--CCCCCCCCHHHHHH
Q 028055 24 ILIVHIKKHGH-------PNWRALPKQAGLLRC----GKSCRLRWINYLRP--DIKRGNFSKEEEET 77 (214)
Q Consensus 24 ~L~~~v~~~g~-------~nW~~Ia~~~~~~Rt----~~qcr~Rw~~~L~p--~i~kg~WT~EED~~ 77 (214)
+|..+|.+.|- ..|..|+..++...+ +.+.+..|.++|.| ...+|.=.++|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~ 134 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQA 134 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 45666666652 259999999876332 34578888888877 22334444444433
No 150
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=27.99 E-value=76 Score=21.28 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhcC----CcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 028055 71 SKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 71 T~EED~~Ll~l~~~~G----~kW~~IA~~lpgRt~~~~knrw~~~lk 113 (214)
|.+-|..|+.+....| -.=.+||+.+ |-+...|..+-..+.+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 5566788889988888 2568999999 7888777776554443
No 151
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=27.81 E-value=37 Score=23.79 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 75 EETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 75 D~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
+..+..++...|..|..+|++| |=+..+|..
T Consensus 14 ~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 14 QVAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3455667788899999999999 888877755
No 152
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=27.77 E-value=22 Score=27.13 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccC
Q 028055 20 EEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRP 63 (214)
Q Consensus 20 EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p 63 (214)
+-|.+|+.+.+..|...+.+||+.++ -+...|+.|..+...-
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 45788899999999889999999998 5677788887655433
No 153
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.56 E-value=94 Score=17.32 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHH
Q 028055 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVW 108 (214)
Q Consensus 69 ~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw 108 (214)
..+.++-..++.++ .-|-...+||+.+ |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666666665 4577889999999 88888877643
No 154
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=25.40 E-value=49 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 74 EEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 74 ED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
.+..++.+....|-.-.+||..+ |-+...|+++.+..+++
T Consensus 97 ~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 97 LSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAE 136 (157)
T ss_dssp THHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44555556666677889999999 99999999987665443
No 155
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.93 E-value=1.8e+02 Score=21.06 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHH
Q 028055 68 GNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNV 107 (214)
Q Consensus 68 g~WT~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knr 107 (214)
...|.++-..++.++. -|..-.+||+.+ |.+...|...
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw 68 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKI 68 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHH
Confidence 4688888888888885 588889999999 8888877654
No 156
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=24.91 E-value=1.2e+02 Score=21.35 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=28.2
Q ss_pred HHHHHHHHHh----cCCcHHHHHhhCCCCCHHHHHHHHHHHhHH
Q 028055 75 EETIINLHDM----LGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (214)
Q Consensus 75 D~~Ll~l~~~----~G~kW~~IA~~lpgRt~~~~knrw~~~lkk 114 (214)
+..++.+.-- .|-...+||..+ |-|...|+++-+.-+++
T Consensus 24 eR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 24 EAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 66 (99)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4445555332 346799999999 99999999987766654
No 157
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=24.77 E-value=26 Score=24.82 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 72 ~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
.+|-..|+. ....|..|..+|++| |=+...|..
T Consensus 5 r~~v~~ll~-~~~~G~dW~~LA~~L-g~~~~~I~~ 37 (91)
T 2ib1_A 5 QEEVQRLLM-MGEPAKGWQELAGHL-GYQAEAVET 37 (91)
T ss_dssp HHTTHHHHT-TTCCSSTHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHhc-CCCCCccHHHHHHHc-CCCHHHHHH
Confidence 456667777 466699999999999 878877766
No 158
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.75 E-value=1.4e+02 Score=20.26 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcC----CcHHHHHhhCCCCCHHHHHHHHHHHh
Q 028055 72 KEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHL 112 (214)
Q Consensus 72 ~EED~~Ll~l~~~~G----~kW~~IA~~lpgRt~~~~knrw~~~l 112 (214)
.+-|+.|+++....| -.=.+||+.| |-+...|+.+-..+.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 455778889998988 3578999999 788888877655443
No 159
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=23.26 E-value=77 Score=24.85 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 76 ETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 76 ~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
+.|+++-..-|-.|.+||+.+ |+|..-+-.
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~i-G~S~v~vta 45 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGT-GLAEAFVTA 45 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTS-SSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHh-CcCHHHHHH
Confidence 567788888899999999999 899875543
No 160
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=23.25 E-value=45 Score=23.14 Aligned_cols=29 Identities=38% Similarity=0.803 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 72 ~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
.+|-..|+. |..|..+|++| |=+...|.+
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~L-g~~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGEL-GYQPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHc-CCCHHHHHH
Confidence 345555555 99999999999 777766665
No 161
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.03 E-value=1.4e+02 Score=21.86 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHH
Q 028055 74 EEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 74 ED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~ 115 (214)
-|..|+.+....| -.+.+||+.+ |-+...|..|...+.+..
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 50 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAG 50 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcC
Confidence 4567777777766 4799999999 899999999987765543
No 162
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=22.81 E-value=99 Score=22.91 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=21.2
Q ss_pred HHHHHHhcCCcHHHHHhhCCCCCHHHHHH
Q 028055 78 IINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (214)
Q Consensus 78 Ll~l~~~~G~kW~~IA~~lpgRt~~~~kn 106 (214)
+-.+....|..|..+|+.| |=+..+|..
T Consensus 9 f~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 36 (122)
T 3ezq_B 9 FNVICDNVGKDWRRLARQL-KVSDTKIDS 36 (122)
T ss_dssp HHHHHTTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHh-CCCHHHHHH
Confidence 3345567899999999999 777766654
No 163
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=22.65 E-value=94 Score=21.35 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHhhCCCCCHHHHHHH
Q 028055 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNV 107 (214)
Q Consensus 72 ~EED~~Ll~l~~~~G~kW~~IA~~lpgRt~~~~knr 107 (214)
.-|.+.|.++...++++.++.|+.| |=+...+..+
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyrK 74 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHH
Confidence 4466778889999999999999998 7776666543
No 164
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.52 E-value=1.4e+02 Score=22.21 Aligned_cols=42 Identities=7% Similarity=0.016 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHH
Q 028055 73 EEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (214)
Q Consensus 73 EED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~ 115 (214)
+-|..|+.+....| -.+.+||+.+ |-+...|..|...+.+..
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 52 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAG 52 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 34556777776666 5799999999 899999999987765543
No 165
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=21.40 E-value=52 Score=23.38 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCcchhchhhCCCCCccccchhhhhcccCCC-------CCCCCCHHHHHHHH
Q 028055 22 DRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDI-------KRGNFSKEEEETII 79 (214)
Q Consensus 22 D~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i-------~kg~WT~EED~~Ll 79 (214)
+.+|.++|..|| |..++..+.. ||= ..+|++ ++.+|-.+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I-~CF---------~~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNI-NCF---------KKDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTS-SST---------TSSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhccc-ccC---------CCCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578899999998 9999887764 432 235553 45688887766554
No 166
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.32 E-value=1.5e+02 Score=21.24 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcC-CcHHHHHhhCCCCCHHHHHHHHHHHhHHHH
Q 028055 74 EEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (214)
Q Consensus 74 ED~~Ll~l~~~~G-~kW~~IA~~lpgRt~~~~knrw~~~lkk~~ 116 (214)
-|..|+.+....| -.+.+||+.+ |-+...|..+...+.+..+
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~ 47 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGI 47 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 3556676666655 4799999999 9999999998877655433
No 167
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=21.31 E-value=61 Score=22.19 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcchhchhhCCCCCcccc
Q 028055 16 PWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSC 53 (214)
Q Consensus 16 ~WT~EED~~L~~~v~~~g~~nW~~Ia~~~~~~Rt~~qc 53 (214)
..|...++++..+....|...=-.||+.+|. |+++++
T Consensus 6 qls~~~ee~I~~fL~~~Gp~~AL~IAK~LGl-ktAK~V 42 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGPQRALVIAQALGM-RTAKDV 42 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHTTC-CSGGGT
T ss_pred hhhhhhHHHHHHHHHHcCCchHHHHHHHhCc-chhhhc
Confidence 3455556777789999998777789999998 999987
No 168
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.12 E-value=20 Score=27.96 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHhcCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 028055 80 NLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLK 113 (214)
Q Consensus 80 ~l~~~~G~kW~~IA~~lpgRt~~~~knrw~~~lk 113 (214)
.++...|-...+||+.| |-|...|+.+.+..++
T Consensus 208 ~l~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 208 YLRYYKDQTQSEVASRL-GISQVQMSRLEKKILQ 240 (243)
T ss_dssp ----------------------------------
T ss_pred HHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 33333456688999999 8888888887665543
Done!