Query 028057
Match_columns 214
No_of_seqs 59 out of 61
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 08:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j01_J 50S ribosomal protein L 82.7 0.48 1.6E-05 37.6 1.7 24 159-182 109-132 (173)
2 1zav_A 50S ribosomal protein L 79.0 0.56 1.9E-05 37.5 0.9 26 157-182 114-139 (180)
3 3sgf_H 50S ribosomal protein L 61.0 0.55 1.9E-05 37.3 -2.9 23 160-182 111-133 (165)
4 1tv8_A MOAA, molybdenum cofact 47.4 25 0.00086 28.9 4.8 61 59-122 71-135 (340)
5 3rjz_A N-type ATP pyrophosphat 29.9 1.1E+02 0.0037 25.6 6.1 62 56-117 90-153 (237)
6 3ixl_A Amdase, arylmalonate de 29.0 64 0.0022 26.2 4.4 48 71-118 106-155 (240)
7 2x4i_A CAG38848, uncharacteriz 26.6 23 0.0008 27.8 1.3 57 110-177 41-102 (114)
8 1p16_A GTP--RNA, mRNA capping 26.2 60 0.0021 28.4 4.0 34 166-201 303-343 (395)
9 2j85_A STIV B116; viral protei 25.6 24 0.00083 28.0 1.3 57 110-177 45-106 (122)
10 2j13_A Polysaccharide deacetyl 24.7 51 0.0018 26.7 3.1 50 64-113 119-178 (247)
11 3fy1_A Amcase, TSA1902, acidic 22.3 42 0.0014 29.1 2.2 25 171-195 55-79 (395)
12 3vus_A Poly-beta-1,6-N-acetyl- 22.0 72 0.0025 26.2 3.5 36 84-119 205-240 (268)
13 2obb_A Hypothetical protein; s 21.2 33 0.0011 26.4 1.2 35 95-130 30-67 (142)
14 1vhy_A Hypothetical protein HI 20.5 80 0.0027 26.3 3.5 35 80-114 189-223 (257)
15 3t7v_A Methylornithine synthas 20.5 3.1E+02 0.011 22.5 7.1 81 72-152 153-252 (350)
16 1v6z_A Hypothetical protein TT 20.4 71 0.0024 26.1 3.1 35 80-114 173-207 (228)
17 2dgd_A 223AA long hypothetical 20.4 1.4E+02 0.0048 23.2 4.7 49 70-118 96-146 (223)
No 1
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=82.67 E-value=0.48 Score=37.62 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=21.5
Q ss_pred EEEEeceecCHHHHHHHHcCCCCC
Q 028057 159 VWIIEAKVLSKSELQFLALLPTLR 182 (214)
Q Consensus 159 LWiiEG~VLS~~EL~~L~~Lp~~e 182 (214)
-=++||++||.+|++.|++||++|
T Consensus 109 gg~~eg~~~~~~~v~~la~LPs~e 132 (173)
T 2j01_J 109 SGLLQGQILTAKDVEALAELPTMD 132 (173)
T ss_pred EEEECCEEcCHHHHHHHhcCCCHH
Confidence 346899999999999999999875
No 2
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=79.05 E-value=0.56 Score=37.45 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.3
Q ss_pred eEEEEEeceecCHHHHHHHHcCCCCC
Q 028057 157 LVVWIIEAKVLSKSELQFLALLPTLR 182 (214)
Q Consensus 157 LVLWiiEG~VLS~~EL~~L~~Lp~~e 182 (214)
+.-=.+||++||.+|++.|++||++|
T Consensus 114 ikgg~~eg~~~~~~~v~~la~LPs~e 139 (180)
T 1zav_A 114 LKGGFLEGKKFTAEEVENIAKLPSKE 139 (180)
T ss_dssp EEEEEETTEEEEHHHHHHHHTCCCHH
T ss_pred EEEEEECCEEcCHHHHHHHhcCCCHH
Confidence 33457899999999999999999865
No 3
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=61.00 E-value=0.55 Score=37.29 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEeceecCHHHHHHHHcCCCCC
Q 028057 160 WIIEAKVLSKSELQFLALLPTLR 182 (214)
Q Consensus 160 WiiEG~VLS~~EL~~L~~Lp~~e 182 (214)
=++||++||.+|++.|++||++|
T Consensus 111 g~~eg~~~~~~~v~~la~LPs~e 133 (165)
T 3sgf_H 111 AAFEGELIPASQIDRLATLPTYE 133 (165)
T ss_dssp TTCCCCTTTTCCCCCCCTTTTTT
T ss_pred EEEcCEEeCHHHHHHHHcCCCHH
Confidence 36899999999999999999887
No 4
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=47.37 E-value=25 Score=28.87 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=44.4
Q ss_pred ccccCc-ccCcchhhHHHHHHhcc---eeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhh
Q 028057 59 DFIGGD-LLKPDLGRWLSDVEKHK---AIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETT 122 (214)
Q Consensus 59 d~iggd-l~~~d~~~FirDLEk~G---aLAvyaPlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeay 122 (214)
.|.||+ |+..|+.++++.+.+.+ -+.|.+ -|=.-.++..+|+.+|-..+.+|--|+ |++.|
T Consensus 71 ~~tGGEPll~~~l~~li~~~~~~~~~~~i~i~T--NG~ll~~~~~~L~~~g~~~v~iSld~~-~~~~~ 135 (340)
T 1tv8_A 71 RITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTT--NGLLLKKHGQKLYDAGLRRINVSLDAI-DDTLF 135 (340)
T ss_dssp EEESSCGGGSTTHHHHHHHHTTCTTCCEEEEEE--CSTTHHHHHHHHHHHTCCEEEEECCCS-SHHHH
T ss_pred EEeCCCccchhhHHHHHHHHHhCCCCCeEEEEe--CccchHHHHHHHHHCCCCEEEEecCCC-CHHHH
Confidence 356776 56789999999998875 455544 233335688999999999999998885 45543
No 5
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=29.87 E-value=1.1e+02 Score=25.64 Aligned_cols=62 Identities=24% Similarity=0.433 Sum_probs=47.2
Q ss_pred cccccccCcccCcchhhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEecc--CCCC
Q 028057 56 EIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSA--RGLG 117 (214)
Q Consensus 56 ~~~d~iggdl~~~d~~~FirDLEk~GaLAvyaPlEGG~EGRy~RRLRaaGY~t~~~SA--RGLG 117 (214)
|+--.+=||+.--+...++.++=+.=-|-.+.||-+=-..-|++.+-+.|+.+..++. .||+
T Consensus 90 ~i~~vv~Gdi~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~gL~ 153 (237)
T 3rjz_A 90 KIQGIVAGALASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAYGLD 153 (237)
T ss_dssp CCSEEECC---CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEESTTCC
T ss_pred CCcEEEECCcchHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEecCCCC
Confidence 5566678899888877777776544447889999999999999999999999998875 6663
No 6
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=29.03 E-value=64 Score=26.24 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=36.1
Q ss_pred hhHHHHHHhcce--eEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCC
Q 028057 71 GRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGD 118 (214)
Q Consensus 71 ~~FirDLEk~Ga--LAvyaPlEGG~EGRy~RRLRaaGY~t~~~SARGLGD 118 (214)
+-....+.+.|+ +||-+|-.-=...+|.++|+++|+.......-|+.|
T Consensus 106 ~A~~~al~~~g~~rvglltpy~~~~~~~~~~~l~~~Giev~~~~~~~~~~ 155 (240)
T 3ixl_A 106 TAVLNGLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITG 155 (240)
T ss_dssp HHHHHHHHHTTCSEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCC
T ss_pred HHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHHCCCEEeccccCCCCC
Confidence 556677776664 999999433334799999999999988877776654
No 7
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=26.63 E-value=23 Score=27.75 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=36.8
Q ss_pred EeccCCCCChhhhhhhcCCCCC-CceeEEeeCcchhhhhhcCCCCCcceEEEE----EeceecCHHHHHHHHc
Q 028057 110 DLSARGLGDPETTLTKVYPVCP-QPIARWYFPPEVDYRLAALPPSAKGLVVWI----IEAKVLSKSELQFLAL 177 (214)
Q Consensus 110 ~~SARGLGDpeayLt~vHGVRP-q~i~v~~vpP~v~yqL~~LPp~~KgLVLWi----iEG~VLS~~EL~~L~~ 177 (214)
.+||=|==|-+..|...-|+.- .|---..+- +++|.+|+=+ =||+|||.+||+-+-.
T Consensus 41 ~iSaIGH~sTA~lls~Llg~~ip~NR~~i~~~-----------~GD~alv~~L~~Rl~EG~vl~~eEi~k~~e 102 (114)
T 2x4i_A 41 IINSIGHDSTIQLINSLCGTTFQKNRVEIKLE-----------KEDKLYVVQISQRLEEGKILTLEEILKLYE 102 (114)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCCCBC-----------TTCEEEEEEEC-------CCCHHHHHHHHH
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEec-----------CCCEEEEEEecccCCCCccCCHHHHHHHHH
Confidence 5678888889999999999875 222111122 3677777653 3899999999998754
No 8
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=26.19 E-value=60 Score=28.45 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=26.0
Q ss_pred ecCHHHHHHHHcCCCCCCCeEEEEEe-------CCeeeeeecc
Q 028057 166 VLSKSELQFLALLPTLRPKVRVIAEC-------GNWRKFMWKP 201 (214)
Q Consensus 166 VLS~~EL~~L~~Lp~~ePrvKVVvEm-------GG~R~frWqP 201 (214)
-||++|++.|..+.+..+. -|||| |.||-.||-.
T Consensus 303 ~ltd~e~~~l~~~~~~~~~--~IvEc~~~~~~~g~wr~~R~R~ 343 (395)
T 1p16_A 303 DLSDDDWERLKALEQPLQG--RIAECRQSTTKKGYWEMLRFRN 343 (395)
T ss_dssp CCCHHHHHHHHHSSSCCTT--CEEEEEECSSSTTEEEEEEECT
T ss_pred EeCHHHHHHhHhhcccCCC--EEEEEEeecCCCCccEEEEEeC
Confidence 4899999999887765553 36898 5678888865
No 9
>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, STI archaea, crenarchaea, sulfolobus turreted icosa virus; 2.39A {Sulfolobus turreted icosahedral virus} SCOP: d.321.1.1
Probab=25.61 E-value=24 Score=28.00 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=39.0
Q ss_pred EeccCCCCChhhhhhhcCCCCC-CceeEEeeCcchhhhhhcCCCCCcceEEEE----EeceecCHHHHHHHHc
Q 028057 110 DLSARGLGDPETTLTKVYPVCP-QPIARWYFPPEVDYRLAALPPSAKGLVVWI----IEAKVLSKSELQFLAL 177 (214)
Q Consensus 110 ~~SARGLGDpeayLt~vHGVRP-q~i~v~~vpP~v~yqL~~LPp~~KgLVLWi----iEG~VLS~~EL~~L~~ 177 (214)
.+||=|==|-+..|...=|++- .|---. .++ +++|.+|+=| =||+|||.+||+-+-.
T Consensus 45 ~vsaIGH~sTAqlls~Llg~~ip~NRi~i--------~~~---~GD~alv~~L~~Rl~EG~vl~~eEi~kiye 106 (122)
T 2j85_A 45 LINAIGHDSTINLVNTLCGTQLQKNRVEV--------KMN---EGDEALIIMISQRLEEGKVLSDKEIKDMYR 106 (122)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCC--------CBC---TTCEEEEEEESSCCCSSCCCCHHHHHHHHH
T ss_pred eEEeeccHHHHHHHHHHhCCCcCccceeE--------Eec---CCCEEEEEEecccCCCCccCCHHHHHHHHH
Confidence 4677788888899999988875 221111 122 4677766653 2899999999998743
No 10
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=24.74 E-value=51 Score=26.71 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=39.1
Q ss_pred cccCcchhhHHHHHHhc--------ce--eEEecCCCCCchhhhhhHhhhcCceEEEecc
Q 028057 64 DLLKPDLGRWLSDVEKH--------KA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSA 113 (214)
Q Consensus 64 dl~~~d~~~FirDLEk~--------Ga--LAvyaPlEGG~EGRy~RRLRaaGY~t~~~SA 113 (214)
++-..+..++.+|+++. |. .-.|.|+-|-+-.+.++-|+..||.+...|.
T Consensus 119 ~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~wsv 178 (247)
T 2j13_A 119 DFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVFWSL 178 (247)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCGGGEECHHHHHHHHHTTCEEECCSE
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHCCCEEEecCc
Confidence 45566777777777653 43 4578999999999999999999999987664
No 11
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure, crystallography, asthma,inhibitor, chitin degradation, methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A* 2ybt_A* 2ybu_A*
Probab=22.27 E-value=42 Score=29.07 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.9
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCee
Q 028057 171 ELQFLALLPTLRPKVRVIAECGNWR 195 (214)
Q Consensus 171 EL~~L~~Lp~~ePrvKVVvEmGG~R 195 (214)
-+..+..|-++.|.+||++-+|||-
T Consensus 55 ~~~~~~~lK~~~p~lKvllSiGGw~ 79 (395)
T 3fy1_A 55 LYQAFNGLKNKNSQLKTLLAIGGWN 79 (395)
T ss_dssp HHHHHHHGGGSCTTCEEEEEEECGG
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 4567888999999999999999984
No 12
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=22.00 E-value=72 Score=26.25 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=32.9
Q ss_pred EEecCCCCCchhhhhhHhhhcCceEEEeccCCCCCh
Q 028057 84 AIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDP 119 (214)
Q Consensus 84 AvyaPlEGG~EGRy~RRLRaaGY~t~~~SARGLGDp 119 (214)
-.|+|+-|-|-.+.++-++.+||.+..++.+|.-++
T Consensus 205 ~~fr~PyG~~n~~~~~~~~~~Gy~~a~t~~~g~~~~ 240 (268)
T 3vus_A 205 HVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANA 240 (268)
T ss_dssp CEEECGGGCCCHHHHHHHHHTTCCEEECCCSSCEET
T ss_pred CEEEeCCCcCCHHHHHHHHHCCCcEEEEecCCcCCC
Confidence 589999999999999999999999999999998554
No 13
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=21.18 E-value=33 Score=26.45 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=26.7
Q ss_pred hhhhhHhhhcCceEEEeccCC---CCChhhhhhhcCCCC
Q 028057 95 GRYLNRLRYLGYYFLDLSARG---LGDPETTLTKVYPVC 130 (214)
Q Consensus 95 GRy~RRLRaaGY~t~~~SARG---LGDpeayLt~vHGVR 130 (214)
-..+++|+++||.....|+|. +-....|| +.||+.
T Consensus 30 ~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l-~~~gi~ 67 (142)
T 2obb_A 30 VETLKLLQQEKHRLILWSVREGELLDEAIEWC-RARGLE 67 (142)
T ss_dssp HHHHHHHHHTTCEEEECCSCCHHHHHHHHHHH-HTTTCC
T ss_pred HHHHHHHHHCCCEEEEEeCCCcccHHHHHHHH-HHcCCC
Confidence 467899999999999999996 44555553 457763
No 14
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=20.55 E-value=80 Score=26.34 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=30.1
Q ss_pred cceeEEecCCCCCchhhhhhHhhhcCceEEEeccC
Q 028057 80 HKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (214)
Q Consensus 80 ~GaLAvyaPlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (214)
.+.++|..=+||||.-.=...++++|+..+.+--|
T Consensus 189 ~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~r 223 (257)
T 1vhy_A 189 AGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKR 223 (257)
T ss_dssp TTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCC
Confidence 35789999999999999999999999988876444
No 15
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=20.47 E-value=3.1e+02 Score=22.54 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=48.5
Q ss_pred hHHHHHHhcceeEEecCCCCCchhhh---------------hhHhhhcCceEEEeccCCCCC----hhhhhhhcCCCCCC
Q 028057 72 RWLSDVEKHKAIAIYTPHEGGYEGRY---------------LNRLRYLGYYFLDLSARGLGD----PETTLTKVYPVCPQ 132 (214)
Q Consensus 72 ~FirDLEk~GaLAvyaPlEGG~EGRy---------------~RRLRaaGY~t~~~SARGLGD----peayLt~vHGVRPq 132 (214)
..++.|.++|+=.+..-+|.+.+--| .++++.+|+.+-..---|+|| ....+..+....|+
T Consensus 153 e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~~~ 232 (350)
T 3t7v_A 153 ATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTNDPD 232 (350)
T ss_dssp HHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhCCCC
Confidence 45666777776666666666533221 245566777765555567775 22334444445567
Q ss_pred ceeEEeeCcchhhhhhcCCC
Q 028057 133 PIARWYFPPEVDYRLAALPP 152 (214)
Q Consensus 133 ~i~v~~vpP~v~yqL~~LPp 152 (214)
.+.++.+.|.-+..|...|+
T Consensus 233 ~v~~~~f~p~~gT~l~~~~~ 252 (350)
T 3t7v_A 233 MVRVMTFLPQEGTPLEGFRD 252 (350)
T ss_dssp EEEEEECCCCTTSTTTTCCC
T ss_pred EEEecceeeCCCCcCccCCC
Confidence 78888888866666665543
No 16
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=20.40 E-value=71 Score=26.10 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=30.1
Q ss_pred cceeEEecCCCCCchhhhhhHhhhcCceEEEeccC
Q 028057 80 HKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (214)
Q Consensus 80 ~GaLAvyaPlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (214)
.+.+.|..=+||||.-.=...++++|+..+.+--|
T Consensus 173 ~~~~~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~r 207 (228)
T 1v6z_A 173 EKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRR 207 (228)
T ss_dssp TSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSS
T ss_pred CCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCC
Confidence 36789999999999999999999999988876444
No 17
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=20.35 E-value=1.4e+02 Score=23.18 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=38.6
Q ss_pred hhhHHHHHHhcc--eeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCC
Q 028057 70 LGRWLSDVEKHK--AIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGD 118 (214)
Q Consensus 70 ~~~FirDLEk~G--aLAvyaPlEGG~EGRy~RRLRaaGY~t~~~SARGLGD 118 (214)
.+...+.+...| -+||.+|..-=...+|.++|++.|+......+-++-|
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~ 146 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGTPYIKERTLEEVEWWRNKGFEIVGYDGLGKIR 146 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHHHTTTCEEEEEEECCCCS
T ss_pred HHHHHHHHHHcCCCeEEEEeCCchHHHHHHHHHHHhCCcEEecccCCCCCC
Confidence 677778887655 6999998775446799999999999988877777653
Done!