BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028058
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 33/133 (24%)
Query: 40 NGSVRNGNLQYAMCT-----FKPPSKNQELFDEL----------------GFKDKFSVNS 78
+GSV G +QY C+ F PPS+ Q L D L GF+ FS S
Sbjct: 526 DGSV--GGVQYFSCSPRYGIFAPPSRVQRLSDSLDTLSEISSNKQNHSYPGFRRSFSTTS 583
Query: 79 A---EENSREIAEVKEE---KREEEKDGSDGSSE-KVKLRRGRQVMRRSNLLAKQVISIQ 131
A +E +R A K + +R + G E VKL G QV+ S + ++ +++
Sbjct: 584 ASSQKEINRRNAFAKTKTTLRRSWSSSTTAGGLEGTVKLHEGSQVLLTS---SNEMATVR 640
Query: 132 SAMSLGFVSQLWV 144
F S +W+
Sbjct: 641 YVGPTDFASGIWL 653
>sp|A3PA95|SYA_PROM0 Alanine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9301)
GN=alaS PE=3 SV=1
Length = 886
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 63 ELFDELGFKDKFSVNSAEENSREIAEVK--EEKREEEKDGSDGSSEKVKLRRGRQVMRRS 120
EL+D GF + +V AEENS + +VK EE+ +K+ + +S + L + R
Sbjct: 392 ELYDTYGFPLELTVEIAEENSISV-DVKGFEEEMNAQKERAKAASSNIDLTLEGSLEREI 450
Query: 121 NLLAKQVIS-IQSAMSLGFVSQLWVDTT 147
+L K V + S +S + +++D+T
Sbjct: 451 DLFNKTVFNGYNSLLSEAEIKGIFLDST 478
>sp|Q7MUH6|UPPP_PORGI Undecaprenyl-diphosphatase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=uppP PE=3 SV=1
Length = 280
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 112 RGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVD---TTSWVVLVV 154
+G++ M R +L K +I++ A+ LGF+ + WVD + WVV VV
Sbjct: 79 KGKEFMSRFDLYWKLLIALVPAVILGFLFEDWVDRMLGSVWVVAVV 124
>sp|B2RI95|UPPP_PORG3 Undecaprenyl-diphosphatase OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=uppP PE=3 SV=1
Length = 280
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 112 RGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVD---TTSWVVLVV 154
+G++ M R +L K +I++ A+ LGF+ + WVD + WVV VV
Sbjct: 79 KGKEFMSRFDLYWKLLIALVPAVILGFLFEDWVDRMLGSVWVVAVV 124
>sp|A1WXV1|IF2_HALHL Translation initiation factor IF-2 OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=infB PE=3 SV=1
Length = 890
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 68 LGFKDKFSVNSAEENSREIAEVKE--EKREEEKDGSDGSSEKVKLRR 112
LG +D + SAE+ + +A +++ ++EEE GSDGS +K+ L+R
Sbjct: 29 LGRRDDGAALSAEDKATLLAHLRQGSPEQEEEGGGSDGSPKKITLKR 75
>sp|Q31DD9|SYA_PROM9 Alanine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9312)
GN=alaS PE=3 SV=1
Length = 886
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 63 ELFDELGFKDKFSVNSAEENSREIAEVK--EEKREEEKDGSDGSSEKVKLRRGRQVMRRS 120
EL+D GF + +V AEENS + +VK EE+ +K+ + +S + L + R
Sbjct: 392 ELYDTYGFPLELTVEIAEENSISV-DVKGFEEEMNAQKERAKAASSNIDLTLEGSLEREI 450
Query: 121 NLLAKQVIS 129
+L K V +
Sbjct: 451 DLFNKTVFN 459
>sp|Q54MC0|PIGW_DICDI Phosphatidylinositol-glycan biosynthesis class W protein
OS=Dictyostelium discoideum GN=pigw PE=3 SV=2
Length = 492
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 78 SAEENSREIAEVKEEKREEEKDGSDGSSEKVKL---------RRGRQVMRRSNLLAKQVI 128
S + S I + +++KREEE+D +D ++ ++ +QV+ RS+L+ QV
Sbjct: 177 SRQSRSSLIEKQQKKKREEEEDDNDKINKTSSSSSSSSSALKQQQQQVLSRSSLMWHQVK 236
Query: 129 SIQSAMSLGFVSQLWVDTTSW 149
+ M LGFV + + ++
Sbjct: 237 AQAPLMILGFVRMILTKSINY 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,963,457
Number of Sequences: 539616
Number of extensions: 2954533
Number of successful extensions: 17071
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 16796
Number of HSP's gapped (non-prelim): 233
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)