Query 028059
Match_columns 214
No_of_seqs 116 out of 357
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 8.9E-69 1.9E-73 453.3 11.4 167 45-214 1-168 (212)
2 COG5196 ERD2 ER lumen protein 100.0 4.1E-59 8.9E-64 389.5 13.1 167 45-214 1-169 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 7.8E-56 1.7E-60 362.8 12.7 142 72-214 1-145 (147)
4 KOG3211 Predicted endoplasmic 96.3 0.091 2E-06 46.2 12.3 140 63-208 49-191 (230)
5 TIGR00951 2A43 Lysosomal Cysti 96.3 0.091 2E-06 45.8 12.4 138 56-195 15-172 (220)
6 PF04193 PQ-loop: PQ loop repe 94.8 0.12 2.7E-06 35.4 6.0 52 162-213 2-53 (61)
7 PF04193 PQ-loop: PQ loop repe 93.3 0.16 3.5E-06 34.8 4.2 46 48-93 5-50 (61)
8 smart00679 CTNS Repeated motif 85.7 0.64 1.4E-05 27.9 1.9 22 64-85 7-28 (32)
9 PHA02246 hypothetical protein 85.6 16 0.00035 31.2 10.7 133 59-206 19-153 (192)
10 smart00679 CTNS Repeated motif 70.5 3.8 8.3E-05 24.4 2.0 27 175-201 1-27 (32)
11 COG4095 Uncharacterized conser 55.8 53 0.0011 25.3 6.2 44 168-211 11-54 (89)
12 COG4095 Uncharacterized conser 41.4 1.3E+02 0.0028 23.1 6.4 38 51-88 11-48 (89)
13 PF02790 COX2_TM: Cytochrome C 41.4 29 0.00064 24.7 2.8 45 110-154 35-80 (84)
14 PTZ00154 40S ribosomal protein 29.5 39 0.00085 27.8 1.9 27 49-82 49-75 (134)
15 KOG2489 Transmembrane protein 25.2 22 0.00048 35.3 -0.2 54 138-191 440-498 (592)
16 PF04612 T2SM: Type II secreti 25.1 24 0.00052 28.2 0.0 36 8-43 1-36 (160)
17 PF09586 YfhO: Bacterial membr 25.1 7.3E+02 0.016 25.1 11.9 60 13-74 109-169 (843)
18 PF06363 Picorna_P3A: Picornav 23.0 1.4E+02 0.003 23.4 3.8 27 44-70 68-94 (100)
19 KOG1623 Multitransmembrane pro 21.8 5.5E+02 0.012 23.1 7.9 36 48-83 6-47 (243)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-69 Score=453.26 Aligned_cols=167 Identities=46% Similarity=0.758 Sum_probs=162.3
Q ss_pred chHHHHHhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhhhcccce-echhHHHHHHHHHHHHHHHHHHHHhc
Q 028059 45 HDNLFVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFV-MEYDIHTLLDLATLATTLWVIYMIRF 123 (214)
Q Consensus 45 ~~~~~llgdl~hl~s~~iLl~KI~~~kS~~GlSlkTQ~Ly~lVf~~R~~~~~~-~~y~~~t~~k~~~l~~s~~iiyli~~ 123 (214)
+|.||++||++|++|+++|++||+|+|||+|||+|||+||++||++||+|+|. .++++|++||+++++++.+++|+|++
T Consensus 1 mn~fr~~gd~~H~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~ 80 (212)
T KOG3106|consen 1 MNNFRFAGDLSHLAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRF 80 (212)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999987 56778999999999999999999999
Q ss_pred ccccccccccccccchhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHHH
Q 028059 124 NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGV 203 (214)
Q Consensus 124 ~~k~Tyd~~~Dtf~~~~liip~~vLali~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~~LG~ 203 (214)
|+|+|||+|+|||+++|+++||+++|+++||+.+ +.|++||||+|||||||||||+|+||+||+|++|+||++|||+
T Consensus 81 k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~t---~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~ 157 (212)
T KOG3106|consen 81 KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSFT---ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGL 157 (212)
T ss_pred HHHHHHhcccCceeEEEEehhheeeeeeecCCcc---HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHH
Confidence 9999999999999999999999999999999854 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 028059 204 ARFWIVVDTCW 214 (214)
Q Consensus 204 yR~ly~inWi~ 214 (214)
||++|++||||
T Consensus 158 yR~ly~~~WI~ 168 (212)
T KOG3106|consen 158 YRALYIANWIY 168 (212)
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.1e-59 Score=389.47 Aligned_cols=167 Identities=29% Similarity=0.558 Sum_probs=158.4
Q ss_pred chHHHHHhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhhhcccceec--hhHHHHHHHHHHHHHHHHHHHHh
Q 028059 45 HDNLFVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVME--YDIHTLLDLATLATTLWVIYMIR 122 (214)
Q Consensus 45 ~~~~~llgdl~hl~s~~iLl~KI~~~kS~~GlSlkTQ~Ly~lVf~~R~~~~~~~~--y~~~t~~k~~~l~~s~~iiyli~ 122 (214)
.|.||++||++|++|+.+|+.||.++|+|+|+|+|||.||++||++||+|.+... .-+|.+||+++++++.+++++|+
T Consensus 1 m~~Fr~lGD~~Hlasi~vLih~ik~tr~csGlSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~ 80 (214)
T COG5196 1 MDTFRFLGDFLHLASIAVLIHKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMR 80 (214)
T ss_pred CcHHHHHhHHHHHHHHHHHHHHhhhcceecceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999887332 22579999999999999999999
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHH
Q 028059 123 FNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALG 202 (214)
Q Consensus 123 ~~~k~Tyd~~~Dtf~~~~liip~~vLali~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~~LG 202 (214)
.++++||||..|||+++++++||+++|+++|.+ ..+.+++||||+|||||||+|||+|+||.||-|++|+||++++|
T Consensus 81 ~~~r~tYdk~lDtF~i~~ll~gsav~slff~~~---~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamg 157 (214)
T COG5196 81 FKYRSTYDKKLDTFNILTLLVGSAVFSLFFTRG---GTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMG 157 (214)
T ss_pred hcccchHHHhhhhhhhhhhhhhhhhheeeecCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHH
Confidence 999999999999999999999999999999865 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 028059 203 VARFWIVVDTCW 214 (214)
Q Consensus 203 ~yR~ly~inWi~ 214 (214)
+||++|++||||
T Consensus 158 LYRalYip~wI~ 169 (214)
T COG5196 158 LYRALYIPYWIL 169 (214)
T ss_pred HHHHhhhhHHHH
Confidence 999999999996
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=7.8e-56 Score=362.77 Aligned_cols=142 Identities=40% Similarity=0.732 Sum_probs=134.6
Q ss_pred ccccccchhhHHHHHHHhhhhcccceec---hhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhHHHHHH
Q 028059 72 TCAGLSLKSQELTAIFLAVRLYCSFVME---YDIHTLLDLATLATTLWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVL 148 (214)
Q Consensus 72 S~~GlSlkTQ~Ly~lVf~~R~~~~~~~~---y~~~t~~k~~~l~~s~~iiyli~~~~k~Tyd~~~Dtf~~~~liip~~vL 148 (214)
||+|+|+|||+||++|+++||+|+...+ ..+|++||++++++|++++|+|+.|||+|||+++|+|+..++++||++|
T Consensus 1 S~~GlSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~~~~~Ty~~~~D~f~~~~li~p~~vL 80 (147)
T PF00810_consen 1 SCSGLSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFFKYKSTYDKEIDTFRLEYLIVPCFVL 80 (147)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhheeehhhhhccccchhhhHHHHHHHHH
Confidence 8999999999999999999999993322 2257999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHHHHHHHHHhhhcC
Q 028059 149 ALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFWIVVDTCW 214 (214)
Q Consensus 149 ali~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~~LG~yR~ly~inWi~ 214 (214)
|+++|| .+++++.|++||||+|||||||+|||+|+||+||+|++|+||+++||+||++|++|||+
T Consensus 81 a~i~~p-~~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~ 145 (147)
T PF00810_consen 81 ALIFHP-LNSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWIY 145 (147)
T ss_pred HHHHhc-cccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 67899999999999999999999999999999999999999999999999999999985
No 4
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=96.35 E-value=0.091 Score=46.18 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=85.7
Q ss_pred HHHHHhhccccccccchhhHHHHHHHhhhhcccceechhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh
Q 028059 63 LIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDLATLATTLWVIYMIRFNLRSSYMEDKDNFAIYYVV 142 (214)
Q Consensus 63 Ll~KI~~~kS~~GlSlkTQ~Ly~lVf~~R~~~~~~~~y~~~t~~k~~~l~~s~~iiyli~~~~k~Tyd~~~Dtf~~~~li 142 (214)
=+.||..+||+.|+|..+|+|=++-++.-+--.+.+.|+.-+.+|..++..+..++-++.+.|+-.- -..|.+--.+.+
T Consensus 49 QI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~gE~~fLl~Q~vili~~if~f~~~~-~~~v~~l~~~~~ 127 (230)
T KOG3211|consen 49 QIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSYGEYPFLLLQAVILILCIFHFSGQT-VTVVQFLGYIAL 127 (230)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhHHHHHHHHHHHHHHHHHHHHhccce-eehhhHHHHHHH
Confidence 3589999999999999999988887764432122333444577899999999988888888877111 112333333333
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhc---CCccchHHHHHHHHHHHHHHH
Q 028059 143 VPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNT---KIVEPFTAHYVFALGVARFWI 208 (214)
Q Consensus 143 ip~~vLali~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~---g~vE~lTshYv~~LG~yR~ly 208 (214)
++....+ +.. ..++.+..=+-.+-.-.++=+||..-..|+ |...-+|.---+.=.+.|.++
T Consensus 128 v~~~~~s----k~~-p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARift 191 (230)
T KOG3211|consen 128 VVSVLAS----KAL-PLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFT 191 (230)
T ss_pred HHHHHHH----hhh-hHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHH
Confidence 3322222 211 122333333333334457889999988886 566666655555555666665
No 5
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.35 E-value=0.091 Score=45.77 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHhhh-------hccc-ceechh---HHHHHHHHHH-----HHHHHHHH
Q 028059 56 HSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR-------LYCS-FVMEYD---IHTLLDLATL-----ATTLWVIY 119 (214)
Q Consensus 56 hl~s~~iLl~KI~~~kS~~GlSlkTQ~Ly~lVf~~R-------~~~~-~~~~y~---~~t~~k~~~l-----~~s~~iiy 119 (214)
...+++-=+.|++|+||++|+|+..-.+-.+.+++- +++. ...+|. +....|-+++ +.++.+++
T Consensus 15 ~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~~~ 94 (220)
T TIGR00951 15 WSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIVLH 94 (220)
T ss_pred HHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 556667778999999999999999988655555433 2211 111121 1111122222 22232323
Q ss_pred HHhccccccccccccccc----chhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHH
Q 028059 120 MIRFNLRSSYMEDKDNFA----IYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTA 195 (214)
Q Consensus 120 li~~~~k~Tyd~~~Dtf~----~~~liip~~vLali~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTs 195 (214)
.+. ++.+..++...+.. ..++.+.+..+..+..+ .....+.+.++...+-+-.++-+||..+-.|.|..+.+..
T Consensus 95 q~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi 172 (220)
T TIGR00951 95 QCG-DYERGWQRVSNPWILRILVALLACFATLLVALLSP-ITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSI 172 (220)
T ss_pred HHh-hccccccccchhHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCH
Confidence 221 22111111111111 01222222222233332 2224567777778888888899999999999875554433
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=94.76 E-value=0.12 Score=35.39 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHHHHHHHHHhhhc
Q 028059 162 NRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFWIVVDTC 213 (214)
Q Consensus 162 ~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~~LG~yR~ly~inWi 213 (214)
.+++...+.-+++++-+||+....|++++|.+.--++.......++.+++.+
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~ 53 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI 53 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999988888888877754
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=93.31 E-value=0.16 Score=34.82 Aligned_cols=46 Identities=26% Similarity=0.101 Sum_probs=36.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhhhc
Q 028059 48 LFVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLY 93 (214)
Q Consensus 48 ~~llgdl~hl~s~~iLl~KI~~~kS~~GlSlkTQ~Ly~lVf~~R~~ 93 (214)
+-..+-..-+.+.+-=++|.+|+||+.|+|..+..+..+..+.+..
T Consensus 5 ~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~ 50 (61)
T PF04193_consen 5 LGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVL 50 (61)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 3345556666777777899999999999999999988887776643
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=85.66 E-value=0.64 Score=27.88 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=18.4
Q ss_pred HHHHhhccccccccchhhHHHH
Q 028059 64 IYKLMKEKTCAGLSLKSQELTA 85 (214)
Q Consensus 64 l~KI~~~kS~~GlSlkTQ~Ly~ 85 (214)
+.|++|+||+.|+|.-+..+-.
T Consensus 7 i~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 7 IIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred HHHHHHcCCcCcCCHHHHHHHH
Confidence 6899999999999987776544
No 9
>PHA02246 hypothetical protein
Probab=85.58 E-value=16 Score=31.15 Aligned_cols=133 Identities=18% Similarity=0.263 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHhhhh--cccceechhHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Q 028059 59 GISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRL--YCSFVMEYDIHTLLDLATLATTLWVIYMIRFNLRSSYMEDKDNF 136 (214)
Q Consensus 59 s~~iLl~KI~~~kS~~GlSlkTQ~Ly~lVf~~R~--~~~~~~~y~~~t~~k~~~l~~s~~iiyli~~~~k~Tyd~~~Dtf 136 (214)
|..--+..+.+.||..|+| .-.-|++++.... ......+..-.++..+ -+-..+.++.+.-..| |.+|-|
T Consensus 19 gYipgL~slvk~~nv~GvS--~~FWYLi~~tvgiSfyNlL~T~~~~fqi~sv-g~nl~lgivcLlv~~~-----rkkd~f 90 (192)
T PHA02246 19 GYIPGLVALVKAESVKGVS--NYFWYLIVATVGISFYNLLLTDASVFQIVSV-GLNLTLGIVCLLVASY-----RKKDYF 90 (192)
T ss_pred hhhhhHHHHhhhcccccHH--HHHHHHHHHHHHHHHHHHHhcCCceEEEeee-ehhhhhhhhheeeehh-----hccccc
Confidence 3344457788999999998 4566777775542 1111111000011000 0011111222222222 346767
Q ss_pred cchhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHHHHHH
Q 028059 137 AIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARF 206 (214)
Q Consensus 137 ~~~~liip~~vLali~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~~LG~yR~ 206 (214)
...++++-++.+-.+- + ..|+.-+.+.----.|-.||...+.|++..|....-.-..+|..=+
T Consensus 91 ~~~fiiifSLllfll~----~---~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~ 153 (192)
T PHA02246 91 SIPFIIVFSLLLFLLS----D---FTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLA 153 (192)
T ss_pred cchHHHHHHHHHHHHh----h---hHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHH
Confidence 6666665444433321 1 2344444444444568899999999999888776655444554433
No 10
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=70.55 E-value=3.8 Score=24.39 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHhcCCccchHHHHHHHH
Q 028059 175 VSVLPQLRVMQNTKIVEPFTAHYVFAL 201 (214)
Q Consensus 175 vAILPQL~mlqk~g~vE~lTshYv~~L 201 (214)
++.+||.....|++.++.+..-+++..
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~ 27 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLW 27 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHH
Confidence 367899999999999999877776643
No 11
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=55.78 E-value=53 Score=25.26 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHHHHHHHHHhh
Q 028059 168 FCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFWIVVD 211 (214)
Q Consensus 168 FSiyLEsvAILPQL~mlqk~g~vE~lTshYv~~LG~yR~ly~in 211 (214)
.+--+-.+|.+||+...-|+++-.+++--....+..++.+.+++
T Consensus 11 ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliy 54 (89)
T COG4095 11 IAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIY 54 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHH
Confidence 34445678999999999999999999888888888888887664
No 12
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=41.43 E-value=1.3e+02 Score=23.14 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=29.9
Q ss_pred HhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Q 028059 51 AAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFL 88 (214)
Q Consensus 51 lgdl~hl~s~~iLl~KI~~~kS~~GlSlkTQ~Ly~lVf 88 (214)
.|...-.++++.=+.|+.|+||.+++|+-+-....+..
T Consensus 11 ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~ 48 (89)
T COG4095 11 IAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIAL 48 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 45666778888889999999999999987766444443
No 13
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=41.42 E-value=29 Score=24.68 Aligned_cols=45 Identities=16% Similarity=0.494 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhc-ccccccccccccccchhhhHHHHHHHHHhCC
Q 028059 110 TLATTLWVIYMIRF-NLRSSYMEDKDNFAIYYVVVPCAVLALLIHP 154 (214)
Q Consensus 110 ~l~~s~~iiyli~~-~~k~Tyd~~~Dtf~~~~liip~~vLali~~p 154 (214)
+.......+|.+.. +..+.+..+.++.-....++|++++..+.-|
T Consensus 35 ~~~V~~~l~~~~~~~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 35 FVFVFYFLIYFLFNSKFPNKFFNHNNKLEIIWTIIPAIILLFLAFP 80 (84)
T ss_dssp HHHHHHHHHHHHHHSSSS--S---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEeeecccccccccccccccccchhhhhhhhHHHHHHHHHHHhh
Confidence 33334444554444 3333333333344445778888877766544
No 14
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=29.45 E-value=39 Score=27.80 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=20.5
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccccccccchhhH
Q 028059 49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (214)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~kS~~GlSlkTQ~ 82 (214)
+++|...|+ .|-.+...+.|||+|.|+
T Consensus 49 rIAGYIThl-------mkri~~gpvrgis~klqe 75 (134)
T PTZ00154 49 KIAGFVTHL-------MKRIQKGPVRGISLKLQE 75 (134)
T ss_pred HHHHHHHHH-------HhhhccCCccccceehhH
Confidence 456666665 455567789999999998
No 15
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=25.20 E-value=22 Score=35.30 Aligned_cols=54 Identities=22% Similarity=0.213 Sum_probs=29.9
Q ss_pred chhhhHHHHHH----HHHhCCCCCcc-hhhHHHHHHHHHHHHhhhhhHHHHHHhcCCcc
Q 028059 138 IYYVVVPCAVL----ALLIHPSTSHN-ILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVE 191 (214)
Q Consensus 138 ~~~liip~~vL----ali~~p~~~~~-~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE 191 (214)
+.|++.|-++- +++-.|..+.+ |.++.+..+=.----.-++||||.-+|-+.|-
T Consensus 440 Ls~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVA 498 (592)
T KOG2489|consen 440 LSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVA 498 (592)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhh
Confidence 45777774433 34443332211 44455544433333456899999999876554
No 16
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=25.13 E-value=24 Score=28.22 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCceehHHHHHHHHHHHHHHHHHHh
Q 028059 8 IHAVSTWVRRQPPKVKAFLAVVSGMAALVLLRFIVH 43 (214)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (214)
+++++.|....+++.+..+.+..++++++++|.+.-
T Consensus 1 m~~l~~~w~~ls~REr~ll~~~~~~l~~~l~~~~~~ 36 (160)
T PF04612_consen 1 MQQLKQWWQSLSPRERRLLLVLGVVLLLALLYLLLW 36 (160)
T ss_dssp ------------------------------------
T ss_pred ChHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998888887777777543
No 17
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=25.12 E-value=7.3e+02 Score=25.14 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=27.4
Q ss_pred HHHHhCCCceehHHHHHHHHHHHHHHHHHHhcchHHHHHhhHHHHHHHH-HHHHHHhhccccc
Q 028059 13 TWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSIGIS-VLIYKLMKEKTCA 74 (214)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~llgdl~hl~s~~-iLl~KI~~~kS~~ 74 (214)
-++|+..++..-+..++.+++=..-.|.+...++..+ .|..=.+..+ +-+-|+.++|...
T Consensus 109 ~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~f--ld~~i~lPL~llgie~~~~~~k~~ 169 (843)
T PF09586_consen 109 LYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMF--LDAMILLPLLLLGIERLLKEKKWW 169 (843)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4566665543223333333222212444554555555 3433333333 4457777777643
No 18
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=22.98 E-value=1.4e+02 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=18.0
Q ss_pred cchHHHHHhhHHHHHHHHHHHHHHhhc
Q 028059 44 DHDNLFVAAEAVHSIGISVLIYKLMKE 70 (214)
Q Consensus 44 d~~~~~llgdl~hl~s~~iLl~KI~~~ 70 (214)
+-.-+-+.+-++..+||+.|.+|+.|.
T Consensus 68 Nk~W~T~~S~~tS~isIL~LV~~~~KK 94 (100)
T PF06363_consen 68 NKAWFTVVSAVTSFISILLLVTKIFKK 94 (100)
T ss_pred cchHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 333344455666778888888888764
No 19
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=21.81 E-value=5.5e+02 Score=23.08 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHHhhHHHHHHHH------HHHHHHhhccccccccchhhHH
Q 028059 48 LFVAAEAVHSIGIS------VLIYKLMKEKTCAGLSLKSQEL 83 (214)
Q Consensus 48 ~~llgdl~hl~s~~------iLl~KI~~~kS~~GlSlkTQ~L 83 (214)
..++|......++. ....+|+|+||.+|.|.-=-++
T Consensus 6 ~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~ 47 (243)
T KOG1623|consen 6 LFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLM 47 (243)
T ss_pred HHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHH
Confidence 34566666665543 4568999999999999655443
Done!