Query 028059
Match_columns 214
No_of_seqs 116 out of 357
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 08:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028059.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028059hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 35.2 10 0.00076 25.6 2.4 32 124-155 49-80 (90)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 13.4 1.7E+02 0.013 19.1 6.7 15 140-154 75-89 (100)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 12.6 1.9E+02 0.014 19.2 6.9 13 140-152 81-93 (107)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 12.0 50 0.0037 21.8 2.0 13 140-152 66-78 (91)
5 d2fm9a1 a.257.1.1 (A:49-263) C 7.9 54 0.0039 25.5 0.8 12 171-182 195-206 (215)
6 d2exna1 b.165.1.1 (A:1-128) Hy 7.3 39 0.0028 23.7 -0.3 13 68-80 7-19 (128)
7 d2ckca1 d.76.2.1 (A:2563-2622) 6.6 1.7E+02 0.012 18.2 2.7 17 4-20 22-38 (60)
8 d1prtd_ b.40.2.1 (D:) Pertussi 5.6 76 0.0055 21.5 0.5 26 1-26 57-82 (110)
9 d2ckaa1 d.76.2.1 (A:2028-2085) 4.6 2.6E+02 0.019 17.1 2.7 17 4-20 24-40 (58)
10 d1ekra_ d.58.21.1 (A:) Molybde 3.6 1.6E+02 0.011 21.5 1.0 20 186-205 98-118 (146)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=35.18 E-value=10 Score=25.60 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=17.3
Q ss_pred ccccccccccccccchhhhHHHHHHHHHhCCC
Q 028059 124 NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPS 155 (214)
Q Consensus 124 ~~k~Tyd~~~Dtf~~~~liip~~vLali~~p~ 155 (214)
++++.+-.+.++.-....++|+++|..+--|+
T Consensus 49 ~~~~~~~~~~~~lEiiWTiiP~lILi~ia~PS 80 (90)
T d1v54b2 49 KLTHTSTMDAQEVETIWTILPAIILILIALPS 80 (90)
T ss_dssp SCCCCSCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 33333333333444456777777777666554
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.35 E-value=1.7e+02 Score=19.06 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHhCC
Q 028059 140 YVVVPCAVLALLIHP 154 (214)
Q Consensus 140 ~liip~~vLali~~p 154 (214)
..++|++++..+.-|
T Consensus 75 WTviP~lILi~l~~p 89 (100)
T d3dtub2 75 WTIVPIVILVAIGAF 89 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666555443
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=12.58 E-value=1.9e+02 Score=19.17 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHh
Q 028059 140 YVVVPCAVLALLI 152 (214)
Q Consensus 140 ~liip~~vLali~ 152 (214)
..++|+++|..+.
T Consensus 81 WTviP~lIL~~la 93 (107)
T d3ehbb2 81 WTLVPVLILVAIG 93 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=12.02 E-value=50 Score=21.83 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHh
Q 028059 140 YVVVPCAVLALLI 152 (214)
Q Consensus 140 ~liip~~vLali~ 152 (214)
..++|++++..+.
T Consensus 66 WtiIP~iil~~ia 78 (91)
T d1fftb2 66 VWTVPILIIIFLA 78 (91)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5556766655553
No 5
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.89 E-value=54 Score=25.52 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.2
Q ss_pred HHHHhhhhhHHH
Q 028059 171 YLEAVSVLPQLR 182 (214)
Q Consensus 171 yLEsvAILPQL~ 182 (214)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999985
No 6
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=7.30 E-value=39 Score=23.69 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=10.1
Q ss_pred hhccccccccchh
Q 028059 68 MKEKTCAGLSLKS 80 (214)
Q Consensus 68 ~~~kS~~GlSlkT 80 (214)
+-=|||.|+|+..
T Consensus 7 ~PIKsc~g~~~~~ 19 (128)
T d2exna1 7 QPIAECGATTQSE 19 (128)
T ss_dssp EEETTTEEECCGG
T ss_pred ecccccCCccccc
Confidence 4459999999854
No 7
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.61 E-value=1.7e+02 Score=18.21 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=13.0
Q ss_pred CCChHHHHHHHHHhCCC
Q 028059 4 PKRPIHAVSTWVRRQPP 20 (214)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (214)
.-+.+..+.+||++|+.
T Consensus 22 ~AP~~~~L~~WL~~hP~ 38 (60)
T d2ckca1 22 DAPKNKDLVEWLKLHPT 38 (60)
T ss_dssp SSCBHHHHHHHHHHCTT
T ss_pred CCcCHHHHHHHHHHCCC
Confidence 33466779999999975
No 8
>d1prtd_ b.40.2.1 (D:) Pertussis toxin S4 subunit {Bordetella pertussis [TaxId: 520]}
Probab=5.57 E-value=76 Score=21.54 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=17.5
Q ss_pred CCCCCChHHHHHHHHHhCCCceehHH
Q 028059 1 MRAPKRPIHAVSTWVRRQPPKVKAFL 26 (214)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (214)
++.+++|+|...+.+--|+...+.++
T Consensus 57 krpgsspmevmlravfmqqrplrmfl 82 (110)
T d1prtd_ 57 KRPGSSPMEVMLRAVFMQQRPLRMFL 82 (110)
T ss_dssp TSCSCCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHhhcchhhhc
Confidence 35677899997776665555555544
No 9
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.64 E-value=2.6e+02 Score=17.10 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=13.0
Q ss_pred CCChHHHHHHHHHhCCC
Q 028059 4 PKRPIHAVSTWVRRQPP 20 (214)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (214)
.-+.+..+..||..|+.
T Consensus 24 ~AP~~~~L~~WL~~nP~ 40 (58)
T d2ckaa1 24 DAPRRAELEMWLQGHPE 40 (58)
T ss_dssp SSCBHHHHHHHHHHCTT
T ss_pred CCcCHHHHHHHHHHCCC
Confidence 33467779999999976
No 10
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=3.56 E-value=1.6e+02 Score=21.46 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=16.9
Q ss_pred hcC-CccchHHHHHHHHHHHH
Q 028059 186 NTK-IVEPFTAHYVFALGVAR 205 (214)
Q Consensus 186 k~g-~vE~lTshYv~~LG~yR 205 (214)
||| |-|.+|+--+++|.+|=
T Consensus 98 kTGVEMEALtavsva~LTiYD 118 (146)
T d1ekra_ 98 KTGVEMEALTAASVAALTIYD 118 (146)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCceehHHHHHHHHHHHHHHH
Confidence 566 88999999999998874
Done!