Query 028060
Match_columns 214
No_of_seqs 208 out of 677
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.5 1.6E-14 3.4E-19 99.3 4.1 51 61-111 2-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.5 4.1E-14 8.9E-19 97.3 5.2 55 60-114 4-59 (60)
3 smart00353 HLH helix loop heli 99.4 2.8E-13 6E-18 91.7 6.3 51 65-115 1-52 (53)
4 KOG1318 Helix loop helix trans 99.4 1.1E-12 2.4E-17 123.3 8.8 84 60-143 233-321 (411)
5 KOG1319 bHLHZip transcription 99.2 1.2E-10 2.5E-15 100.5 8.3 80 60-139 62-146 (229)
6 KOG2483 Upstream transcription 99.0 1.6E-09 3.4E-14 95.7 10.8 84 56-139 55-139 (232)
7 KOG4304 Transcriptional repres 98.5 6.3E-08 1.4E-12 86.3 3.3 59 58-116 30-94 (250)
8 KOG3561 Aryl-hydrocarbon recep 98.3 5E-07 1.1E-11 91.4 5.2 52 61-113 21-75 (803)
9 KOG2588 Predicted DNA-binding 98.3 5.7E-07 1.2E-11 91.8 5.1 77 48-126 265-341 (953)
10 KOG0561 bHLH transcription fac 98.3 6.4E-07 1.4E-11 82.3 3.9 70 61-130 61-130 (373)
11 KOG3960 Myogenic helix-loop-he 97.8 5.9E-05 1.3E-09 67.9 6.8 62 57-118 115-176 (284)
12 KOG4029 Transcription factor H 97.6 7.8E-05 1.7E-09 64.8 4.5 60 59-118 108-169 (228)
13 PLN03217 transcription factor 97.6 0.00019 4.1E-09 55.3 5.8 55 72-126 19-77 (93)
14 PF06005 DUF904: Protein of un 97.4 0.0021 4.6E-08 47.6 9.3 55 104-158 3-57 (72)
15 PRK15422 septal ring assembly 97.3 0.0024 5.3E-08 48.3 9.2 60 100-159 13-72 (79)
16 COG3074 Uncharacterized protei 97.2 0.0053 1.2E-07 45.9 9.2 60 100-159 13-72 (79)
17 PF06005 DUF904: Protein of un 96.9 0.015 3.2E-07 43.1 9.9 57 100-156 13-69 (72)
18 TIGR02894 DNA_bind_RsfA transc 96.8 0.011 2.3E-07 50.2 9.2 60 100-159 82-144 (161)
19 PRK15422 septal ring assembly 96.4 0.035 7.7E-07 42.1 8.7 56 104-159 3-65 (79)
20 KOG3910 Helix loop helix trans 96.1 0.0037 8.1E-08 61.1 2.9 57 60-116 526-584 (632)
21 smart00338 BRLZ basic region l 96.0 0.03 6.4E-07 39.6 6.2 38 105-142 26-63 (65)
22 KOG4005 Transcription factor X 95.9 0.073 1.6E-06 48.2 9.6 88 61-156 60-148 (292)
23 PRK13729 conjugal transfer pil 95.8 0.11 2.4E-06 50.6 11.1 54 106-159 70-123 (475)
24 PF00170 bZIP_1: bZIP transcri 95.7 0.05 1.1E-06 38.4 6.5 37 105-141 26-62 (64)
25 PF06156 DUF972: Protein of un 95.7 0.082 1.8E-06 41.9 8.3 53 109-161 5-57 (107)
26 KOG2264 Exostosin EXT1L [Signa 95.5 0.14 3E-06 51.5 10.8 60 100-159 88-147 (907)
27 TIGR03752 conj_TIGR03752 integ 95.3 0.14 3E-06 50.0 10.0 61 99-159 60-142 (472)
28 PRK04406 hypothetical protein; 95.2 0.33 7.2E-06 36.1 9.7 54 107-160 6-59 (75)
29 PRK13169 DNA replication intia 95.2 0.15 3.3E-06 40.7 8.3 51 109-159 5-55 (110)
30 PRK00846 hypothetical protein; 95.1 0.34 7.3E-06 36.5 9.5 52 109-160 10-61 (77)
31 PRK02119 hypothetical protein; 95.1 0.41 9E-06 35.4 9.7 54 107-160 4-57 (73)
32 COG3074 Uncharacterized protei 95.1 0.25 5.5E-06 37.1 8.5 52 104-155 3-54 (79)
33 KOG4447 Transcription factor T 95.0 0.017 3.6E-07 49.1 2.3 53 60-112 78-130 (173)
34 PF06156 DUF972: Protein of un 94.9 0.23 4.9E-06 39.4 8.5 50 105-154 8-57 (107)
35 PF07106 TBPIP: Tat binding pr 94.9 0.12 2.5E-06 42.9 7.2 55 107-161 81-137 (169)
36 PRK11637 AmiB activator; Provi 94.8 0.43 9.3E-06 44.9 11.6 59 100-158 70-128 (428)
37 PF12325 TMF_TATA_bd: TATA ele 94.6 0.33 7.2E-06 39.2 9.0 42 105-146 16-57 (120)
38 PF04102 SlyX: SlyX; InterPro 94.6 0.24 5.3E-06 35.9 7.5 52 109-160 1-52 (69)
39 PRK02793 phi X174 lysis protei 94.6 0.61 1.3E-05 34.3 9.6 52 109-160 5-56 (72)
40 PRK00295 hypothetical protein; 94.5 0.59 1.3E-05 34.1 9.3 51 110-160 3-53 (68)
41 PRK10884 SH3 domain-containing 94.4 0.32 6.9E-06 42.5 9.0 78 69-156 92-169 (206)
42 COG4026 Uncharacterized protei 94.3 0.4 8.6E-06 43.3 9.4 53 106-158 136-188 (290)
43 KOG3560 Aryl-hydrocarbon recep 94.2 0.032 7E-07 55.4 2.7 60 49-108 10-75 (712)
44 PF08317 Spc7: Spc7 kinetochor 94.2 0.91 2E-05 41.6 11.9 16 71-86 185-200 (325)
45 PRK00736 hypothetical protein; 94.0 0.87 1.9E-05 33.2 9.3 51 110-160 3-53 (68)
46 TIGR02449 conserved hypothetic 94.0 0.65 1.4E-05 34.0 8.5 53 107-159 9-61 (65)
47 COG3883 Uncharacterized protei 93.6 0.62 1.4E-05 42.4 9.6 60 98-157 38-97 (265)
48 PF12329 TMF_DNA_bd: TATA elem 93.6 0.8 1.7E-05 33.8 8.6 56 104-159 11-66 (74)
49 PRK04325 hypothetical protein; 93.5 1.1 2.5E-05 33.1 9.3 53 108-160 5-57 (74)
50 PRK10884 SH3 domain-containing 93.5 1.8 3.8E-05 37.9 11.9 25 131-155 130-154 (206)
51 PRK13729 conjugal transfer pil 93.4 0.67 1.4E-05 45.4 10.0 59 99-157 70-128 (475)
52 COG3883 Uncharacterized protei 93.3 0.48 1E-05 43.2 8.4 61 100-160 33-93 (265)
53 TIGR02449 conserved hypothetic 93.3 1.5 3.2E-05 32.1 9.4 53 107-159 2-54 (65)
54 PRK13169 DNA replication intia 93.3 0.77 1.7E-05 36.7 8.6 50 105-154 8-57 (110)
55 PF08614 ATG16: Autophagy prot 93.2 0.91 2E-05 38.6 9.5 82 70-158 88-169 (194)
56 smart00787 Spc7 Spc7 kinetocho 93.2 1.5 3.2E-05 40.5 11.5 81 70-153 179-259 (312)
57 PF12325 TMF_TATA_bd: TATA ele 93.1 1.3 2.8E-05 35.8 9.7 66 94-159 12-80 (120)
58 PF10211 Ax_dynein_light: Axon 93.0 1.4 3E-05 37.8 10.4 17 70-86 59-75 (189)
59 PF04111 APG6: Autophagy prote 92.8 0.55 1.2E-05 43.2 8.2 19 140-158 113-131 (314)
60 PF13870 DUF4201: Domain of un 92.8 1.6 3.5E-05 36.3 10.3 63 100-162 72-134 (177)
61 PF02183 HALZ: Homeobox associ 92.6 0.53 1.1E-05 31.9 5.8 36 119-154 5-40 (45)
62 PF04880 NUDE_C: NUDE protein, 92.6 0.21 4.6E-06 42.5 4.7 14 101-114 10-23 (166)
63 PRK11637 AmiB activator; Provi 92.6 1 2.2E-05 42.5 9.8 39 120-158 83-121 (428)
64 PF00170 bZIP_1: bZIP transcri 92.5 1.4 3E-05 31.0 8.2 36 121-156 28-63 (64)
65 TIGR02894 DNA_bind_RsfA transc 92.4 0.97 2.1E-05 38.5 8.5 54 104-157 96-149 (161)
66 PHA02562 46 endonuclease subun 92.4 1.3 2.8E-05 42.3 10.5 76 71-153 331-406 (562)
67 KOG2391 Vacuolar sorting prote 92.4 0.73 1.6E-05 43.6 8.4 44 117-160 223-266 (365)
68 KOG0996 Structural maintenance 92.0 2.3 5E-05 45.8 12.3 83 75-159 804-897 (1293)
69 COG5570 Uncharacterized small 92.0 0.52 1.1E-05 33.5 5.3 46 110-155 3-55 (57)
70 PF14197 Cep57_CLD_2: Centroso 91.9 2 4.4E-05 31.5 8.6 52 107-158 7-65 (69)
71 KOG1962 B-cell receptor-associ 91.9 2.4 5.2E-05 37.7 10.6 62 97-158 150-211 (216)
72 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.8 1.5 3.3E-05 35.2 8.7 59 101-159 55-117 (132)
73 PF08317 Spc7: Spc7 kinetochor 91.7 1.2 2.6E-05 40.8 8.9 14 104-117 183-196 (325)
74 PF11932 DUF3450: Protein of u 91.7 1.2 2.5E-05 39.2 8.6 6 193-198 214-219 (251)
75 PF05529 Bap31: B-cell recepto 91.6 1.3 2.7E-05 37.4 8.4 30 125-154 160-189 (192)
76 PF13815 Dzip-like_N: Iguana/D 91.6 1.6 3.5E-05 34.4 8.5 55 99-156 63-117 (118)
77 TIGR02209 ftsL_broad cell divi 91.5 3.3 7.1E-05 30.1 9.4 46 110-156 22-67 (85)
78 PF14197 Cep57_CLD_2: Centroso 91.3 2 4.4E-05 31.5 8.1 52 102-153 16-67 (69)
79 PF08172 CASP_C: CASP C termin 91.3 1 2.2E-05 40.4 7.9 53 108-160 82-134 (248)
80 KOG4196 bZIP transcription fac 91.3 1.8 3.9E-05 35.9 8.5 42 115-156 77-118 (135)
81 smart00338 BRLZ basic region l 91.2 2.7 5.8E-05 29.6 8.5 34 122-155 29-62 (65)
82 PF10473 CENP-F_leu_zip: Leuci 91.2 2.5 5.4E-05 35.1 9.5 43 117-159 50-92 (140)
83 PF04728 LPP: Lipoprotein leuc 91.0 2.5 5.4E-05 30.2 8.0 47 107-153 5-51 (56)
84 COG0216 PrfA Protein chain rel 91.0 2.9 6.3E-05 39.7 10.7 90 73-162 10-105 (363)
85 PF13851 GAS: Growth-arrest sp 90.9 2.3 5.1E-05 36.7 9.5 59 99-157 21-79 (201)
86 PF07106 TBPIP: Tat binding pr 90.9 1 2.2E-05 37.2 7.0 52 107-158 74-127 (169)
87 TIGR02231 conserved hypothetic 90.8 2.1 4.5E-05 41.4 10.0 86 71-160 72-172 (525)
88 KOG3582 Mlx interactors and re 90.7 0.11 2.3E-06 53.0 1.2 79 59-138 650-732 (856)
89 PF07716 bZIP_2: Basic region 90.7 0.77 1.7E-05 31.5 5.2 30 125-154 24-53 (54)
90 PF02183 HALZ: Homeobox associ 90.7 1.1 2.3E-05 30.5 5.7 34 125-158 4-37 (45)
91 PF14662 CCDC155: Coiled-coil 90.7 2.1 4.5E-05 37.5 8.9 49 112-160 81-129 (193)
92 PF07798 DUF1640: Protein of u 90.7 3.2 6.9E-05 34.9 9.9 22 136-157 76-97 (177)
93 PF07200 Mod_r: Modifier of ru 90.6 2.4 5.2E-05 34.2 8.8 63 100-162 29-91 (150)
94 TIGR00219 mreC rod shape-deter 90.4 1.9 4.2E-05 39.0 8.8 43 114-159 68-110 (283)
95 COG2433 Uncharacterized conser 90.3 1.8 3.9E-05 43.7 9.2 44 102-145 419-462 (652)
96 PF11559 ADIP: Afadin- and alp 90.3 6.1 0.00013 32.0 10.9 53 101-153 34-86 (151)
97 PF10234 Cluap1: Clusterin-ass 90.3 1.4 3E-05 40.2 7.8 56 111-167 168-224 (267)
98 PF12808 Mto2_bdg: Micro-tubul 90.2 1.1 2.4E-05 31.5 5.6 47 107-153 3-49 (52)
99 COG4467 Regulator of replicati 90.1 2 4.4E-05 34.6 7.7 49 110-158 6-54 (114)
100 PF11932 DUF3450: Protein of u 89.9 3.2 6.9E-05 36.5 9.6 16 143-158 80-95 (251)
101 PRK09039 hypothetical protein; 89.8 2.4 5.3E-05 39.4 9.2 54 99-152 131-184 (343)
102 PF04977 DivIC: Septum formati 89.7 2.8 6E-05 29.7 7.6 42 116-157 21-62 (80)
103 PF10146 zf-C4H2: Zinc finger- 89.6 3.5 7.6E-05 36.7 9.7 27 104-130 31-57 (230)
104 PF08172 CASP_C: CASP C termin 89.5 2.6 5.7E-05 37.8 8.9 61 94-154 75-135 (248)
105 PF10805 DUF2730: Protein of u 89.4 2.4 5.1E-05 33.2 7.5 48 109-156 46-95 (106)
106 KOG3119 Basic region leucine z 89.2 2.1 4.5E-05 38.7 8.0 54 105-158 194-247 (269)
107 PF07989 Microtub_assoc: Micro 89.0 3.7 7.9E-05 30.6 7.9 26 108-133 3-28 (75)
108 KOG0250 DNA repair protein RAD 89.0 2.4 5.1E-05 45.2 9.3 51 109-159 405-455 (1074)
109 PF11180 DUF2968: Protein of u 89.0 5 0.00011 35.1 9.9 60 105-164 126-185 (192)
110 PTZ00454 26S protease regulato 89.0 1.9 4.2E-05 40.8 8.0 53 104-163 14-66 (398)
111 PF10224 DUF2205: Predicted co 88.7 7 0.00015 29.6 9.4 42 117-158 21-62 (80)
112 PRK13922 rod shape-determining 88.7 2.5 5.5E-05 37.3 8.2 39 116-158 73-111 (276)
113 KOG3558 Hypoxia-inducible fact 88.6 0.32 6.9E-06 49.6 2.7 51 61-112 47-99 (768)
114 PF02403 Seryl_tRNA_N: Seryl-t 88.6 3.8 8.3E-05 31.2 8.2 62 97-158 25-92 (108)
115 PF03962 Mnd1: Mnd1 family; I 88.6 6.6 0.00014 33.6 10.4 76 82-158 36-128 (188)
116 PF04111 APG6: Autophagy prote 88.6 4.3 9.4E-05 37.3 9.9 32 106-137 51-82 (314)
117 KOG3898 Transcription factor N 88.6 0.35 7.6E-06 43.3 2.7 53 60-112 72-125 (254)
118 PF05266 DUF724: Protein of un 88.5 4 8.7E-05 35.2 9.0 14 146-159 172-185 (190)
119 PF10234 Cluap1: Clusterin-ass 88.5 4.7 0.0001 36.8 9.8 59 101-159 172-237 (267)
120 PF09789 DUF2353: Uncharacteri 88.4 7.2 0.00016 36.5 11.2 66 71-137 38-111 (319)
121 KOG3119 Basic region leucine z 88.2 11 0.00023 34.1 11.9 33 108-140 218-250 (269)
122 PRK13922 rod shape-determining 88.0 4.3 9.3E-05 35.9 9.2 27 102-128 66-92 (276)
123 PF08826 DMPK_coil: DMPK coile 88.0 8.2 0.00018 27.9 9.4 54 100-153 6-59 (61)
124 PF06785 UPF0242: Uncharacteri 87.8 3.2 6.9E-05 39.5 8.4 71 99-171 121-194 (401)
125 PF15070 GOLGA2L5: Putative go 87.7 3.7 8E-05 41.4 9.5 45 115-159 18-62 (617)
126 PF04977 DivIC: Septum formati 87.6 3.1 6.7E-05 29.5 6.6 32 107-138 19-50 (80)
127 COG0497 RecN ATPase involved i 87.3 9.1 0.0002 38.4 11.8 92 69-168 296-396 (557)
128 PF05667 DUF812: Protein of un 87.3 4.2 9.2E-05 40.8 9.6 59 100-158 323-381 (594)
129 KOG4797 Transcriptional regula 87.2 3.4 7.4E-05 33.5 7.2 31 117-147 65-95 (123)
130 PF10186 Atg14: UV radiation r 87.2 6 0.00013 34.3 9.5 13 146-158 132-144 (302)
131 COG1256 FlgK Flagellar hook-as 87.1 5.2 0.00011 39.8 10.0 81 71-152 109-189 (552)
132 COG1579 Zn-ribbon protein, pos 87.1 6.7 0.00014 35.3 9.8 46 107-152 91-136 (239)
133 KOG4343 bZIP transcription fac 87.0 0.84 1.8E-05 45.6 4.4 60 97-156 277-339 (655)
134 PRK09039 hypothetical protein; 86.9 5.2 0.00011 37.2 9.4 49 110-158 135-183 (343)
135 PF10018 Med4: Vitamin-D-recep 86.8 11 0.00025 31.8 10.8 41 105-145 22-62 (188)
136 PF14282 FlxA: FlxA-like prote 86.8 4.5 9.7E-05 31.6 7.6 55 104-158 18-76 (106)
137 PF15458 NTR2: Nineteen comple 86.6 8.2 0.00018 34.5 10.2 20 62-81 141-160 (254)
138 PF00038 Filament: Intermediat 86.6 5 0.00011 35.7 8.8 24 102-125 213-236 (312)
139 PF10211 Ax_dynein_light: Axon 86.5 16 0.00035 31.2 11.5 68 60-133 73-148 (189)
140 PRK00888 ftsB cell division pr 86.5 3 6.4E-05 32.7 6.5 32 108-139 30-61 (105)
141 PF04156 IncA: IncA protein; 86.4 7 0.00015 32.4 9.1 50 108-157 126-182 (191)
142 PTZ00454 26S protease regulato 86.2 2.4 5.2E-05 40.1 6.9 43 104-146 21-63 (398)
143 PF05008 V-SNARE: Vesicle tran 86.2 4.8 0.0001 29.0 7.1 58 94-157 21-78 (79)
144 PF09304 Cortex-I_coil: Cortex 86.2 7.2 0.00016 31.3 8.5 34 109-142 41-74 (107)
145 TIGR02492 flgK_ends flagellar 86.1 8.4 0.00018 35.2 10.2 78 73-152 107-185 (322)
146 PF11559 ADIP: Afadin- and alp 86.0 11 0.00023 30.5 9.8 21 66-86 48-68 (151)
147 PHA02562 46 endonuclease subun 86.0 5.2 0.00011 38.2 9.1 16 71-86 307-322 (562)
148 smart00787 Spc7 Spc7 kinetocho 85.9 5.5 0.00012 36.8 8.9 18 101-118 175-192 (312)
149 PF05103 DivIVA: DivIVA protei 85.9 0.65 1.4E-05 36.2 2.5 50 101-150 21-70 (131)
150 PF04156 IncA: IncA protein; 85.8 8.5 0.00018 31.9 9.3 45 112-156 123-167 (191)
151 PF10805 DUF2730: Protein of u 85.8 8 0.00017 30.2 8.6 54 107-160 37-92 (106)
152 COG2433 Uncharacterized conser 85.7 3.6 7.8E-05 41.6 8.1 37 103-139 427-463 (652)
153 PF09304 Cortex-I_coil: Cortex 85.7 5.8 0.00013 31.8 7.8 27 117-143 42-68 (107)
154 PF14662 CCDC155: Coiled-coil 85.6 7.9 0.00017 33.9 9.2 61 99-159 54-114 (193)
155 PF10224 DUF2205: Predicted co 85.5 7.1 0.00015 29.6 7.8 48 107-154 18-65 (80)
156 PRK10803 tol-pal system protei 85.5 7.1 0.00015 34.9 9.2 48 107-154 56-103 (263)
157 PF06632 XRCC4: DNA double-str 85.5 5.3 0.00011 37.6 8.7 45 99-143 131-175 (342)
158 PF15035 Rootletin: Ciliary ro 85.4 8.7 0.00019 33.0 9.3 60 98-157 60-119 (182)
159 KOG2264 Exostosin EXT1L [Signa 85.3 5.4 0.00012 40.6 9.0 42 110-151 105-146 (907)
160 PF07716 bZIP_2: Basic region 85.1 9.8 0.00021 26.0 8.5 29 105-133 25-53 (54)
161 KOG0249 LAR-interacting protei 85.1 4.7 0.0001 41.8 8.6 47 114-160 211-257 (916)
162 TIGR03752 conj_TIGR03752 integ 85.1 4.9 0.00011 39.5 8.5 36 105-140 59-94 (472)
163 COG4026 Uncharacterized protei 85.1 16 0.00034 33.3 11.1 89 62-151 100-188 (290)
164 KOG3650 Predicted coiled-coil 85.0 4.7 0.0001 32.3 6.9 41 112-152 63-103 (120)
165 COG4942 Membrane-bound metallo 84.7 16 0.00034 35.6 11.6 17 69-85 111-127 (420)
166 PF10473 CENP-F_leu_zip: Leuci 84.7 12 0.00026 31.1 9.5 14 73-86 20-33 (140)
167 PF15397 DUF4618: Domain of un 84.7 5.1 0.00011 36.4 7.9 83 73-157 141-224 (258)
168 PF14282 FlxA: FlxA-like prote 84.7 3.8 8.3E-05 32.0 6.3 59 97-155 18-80 (106)
169 COG3937 Uncharacterized conser 84.5 7.7 0.00017 31.1 8.0 58 100-157 41-107 (108)
170 PF08614 ATG16: Autophagy prot 84.5 15 0.00032 31.2 10.3 48 107-154 132-179 (194)
171 PF06637 PV-1: PV-1 protein (P 84.5 14 0.00029 35.9 10.9 24 134-157 350-373 (442)
172 PF14988 DUF4515: Domain of un 84.4 9.1 0.0002 33.4 9.1 58 96-155 142-199 (206)
173 PRK03992 proteasome-activating 84.3 4.3 9.3E-05 38.0 7.6 48 109-163 5-52 (389)
174 TIGR00219 mreC rod shape-deter 84.3 4.4 9.6E-05 36.7 7.4 45 102-149 63-107 (283)
175 PF06632 XRCC4: DNA double-str 84.3 8.7 0.00019 36.1 9.5 38 105-142 144-181 (342)
176 PF07200 Mod_r: Modifier of ru 84.3 7.1 0.00015 31.4 8.0 52 107-158 29-80 (150)
177 PF12718 Tropomyosin_1: Tropom 84.3 12 0.00025 30.9 9.2 27 105-131 14-40 (143)
178 PF04880 NUDE_C: NUDE protein, 84.2 1.2 2.6E-05 38.0 3.5 46 107-156 2-47 (166)
179 PF13094 CENP-Q: CENP-Q, a CEN 84.2 15 0.00032 30.1 9.9 64 95-158 17-80 (160)
180 KOG3559 Transcriptional regula 84.1 1.1 2.4E-05 43.6 3.7 46 66-112 7-54 (598)
181 PF04102 SlyX: SlyX; InterPro 84.0 7.4 0.00016 28.1 7.2 48 106-153 5-52 (69)
182 PRK00888 ftsB cell division pr 84.0 5 0.00011 31.4 6.7 46 113-158 28-73 (105)
183 TIGR00606 rad50 rad50. This fa 84.0 8.6 0.00019 41.5 10.5 82 69-154 849-930 (1311)
184 COG1340 Uncharacterized archae 83.9 9.7 0.00021 35.3 9.5 53 105-157 48-100 (294)
185 KOG1924 RhoA GTPase effector D 83.8 5 0.00011 42.1 8.2 28 73-101 382-409 (1102)
186 PF09726 Macoilin: Transmembra 83.7 19 0.0004 37.0 12.3 18 69-86 544-561 (697)
187 KOG0250 DNA repair protein RAD 83.7 13 0.00028 39.9 11.4 88 69-159 371-462 (1074)
188 KOG4196 bZIP transcription fac 83.5 11 0.00025 31.2 8.8 38 122-159 77-114 (135)
189 COG2919 Septum formation initi 83.4 8.5 0.00018 30.5 7.9 34 108-141 53-86 (117)
190 PRK07739 flgK flagellar hook-a 83.4 12 0.00027 36.3 10.5 77 74-152 120-197 (507)
191 PF15070 GOLGA2L5: Putative go 83.3 7 0.00015 39.5 9.0 55 105-159 15-69 (617)
192 PF05266 DUF724: Protein of un 83.3 11 0.00024 32.5 9.2 17 141-157 160-176 (190)
193 COG2900 SlyX Uncharacterized p 83.2 17 0.00037 27.2 9.3 52 108-159 4-55 (72)
194 KOG0946 ER-Golgi vesicle-tethe 83.0 7.5 0.00016 40.8 9.1 61 99-159 658-718 (970)
195 TIGR02209 ftsL_broad cell divi 82.8 4.8 0.0001 29.2 5.9 33 108-140 27-59 (85)
196 TIGR01069 mutS2 MutS2 family p 82.8 8.8 0.00019 39.5 9.6 10 99-108 498-507 (771)
197 KOG4395 Transcription factor A 82.8 2 4.4E-05 39.3 4.6 52 60-111 174-226 (285)
198 PF12718 Tropomyosin_1: Tropom 82.8 9.3 0.0002 31.4 8.1 42 117-158 19-60 (143)
199 PF09744 Jnk-SapK_ap_N: JNK_SA 82.7 12 0.00026 31.6 8.9 48 106-153 90-137 (158)
200 PF04728 LPP: Lipoprotein leuc 82.7 13 0.00029 26.5 7.8 47 112-158 3-49 (56)
201 PRK10803 tol-pal system protei 82.6 8 0.00017 34.6 8.3 44 116-159 58-101 (263)
202 PF01166 TSC22: TSC-22/dip/bun 82.6 2.1 4.6E-05 30.9 3.7 29 126-154 14-42 (59)
203 PF04999 FtsL: Cell division p 82.6 18 0.00039 27.1 9.2 36 110-145 33-68 (97)
204 PF07889 DUF1664: Protein of u 82.6 9.5 0.00021 31.2 8.0 50 109-158 65-114 (126)
205 PRK02224 chromosome segregatio 82.5 15 0.00033 37.4 11.2 50 107-156 351-400 (880)
206 PRK07521 flgK flagellar hook-a 82.5 11 0.00024 36.4 9.8 77 74-152 103-180 (483)
207 PRK04406 hypothetical protein; 82.4 10 0.00023 28.1 7.5 47 105-151 11-57 (75)
208 PRK05771 V-type ATP synthase s 82.1 5.1 0.00011 39.9 7.5 80 69-154 49-128 (646)
209 PRK07191 flgK flagellar hook-a 82.0 13 0.00028 35.7 10.0 77 75-152 109-185 (456)
210 PF04012 PspA_IM30: PspA/IM30 82.0 14 0.00031 31.4 9.4 54 99-152 85-138 (221)
211 PF11544 Spc42p: Spindle pole 81.9 12 0.00027 28.2 7.8 50 104-153 4-53 (76)
212 PRK14127 cell division protein 81.8 9.8 0.00021 30.4 7.6 29 130-158 41-69 (109)
213 PHA03011 hypothetical protein; 81.8 17 0.00038 29.2 8.9 58 100-157 59-116 (120)
214 PRK03992 proteasome-activating 81.8 6.1 0.00013 36.9 7.5 44 104-147 7-50 (389)
215 PRK00409 recombination and DNA 81.8 7.9 0.00017 39.9 8.9 7 188-194 668-674 (782)
216 KOG4571 Activating transcripti 81.6 19 0.00042 33.4 10.5 49 102-157 238-286 (294)
217 PRK05683 flgK flagellar hook-a 81.5 12 0.00026 38.1 10.0 78 74-152 108-185 (676)
218 PRK06665 flgK flagellar hook-a 81.5 14 0.0003 37.1 10.4 76 75-152 121-197 (627)
219 PF10458 Val_tRNA-synt_C: Valy 81.5 14 0.00031 26.2 7.8 50 110-159 2-65 (66)
220 PF05837 CENP-H: Centromere pr 81.3 15 0.00032 28.7 8.4 53 105-158 17-69 (106)
221 TIGR01554 major_cap_HK97 phage 81.2 7.6 0.00017 35.8 7.9 59 72-134 5-63 (378)
222 KOG0977 Nuclear envelope prote 81.1 11 0.00024 37.6 9.4 9 77-85 120-128 (546)
223 PF07334 IFP_35_N: Interferon- 81.1 2.3 5.1E-05 32.1 3.6 24 136-159 3-26 (76)
224 KOG0995 Centromere-associated 81.1 15 0.00033 36.9 10.3 29 129-157 335-363 (581)
225 PRK15396 murein lipoprotein; P 81.0 13 0.00028 28.0 7.7 47 106-152 26-72 (78)
226 PF10883 DUF2681: Protein of u 80.9 11 0.00024 29.1 7.4 35 102-136 20-54 (87)
227 PF12329 TMF_DNA_bd: TATA elem 80.9 20 0.00043 26.4 9.3 54 104-157 18-71 (74)
228 PF00769 ERM: Ezrin/radixin/mo 80.8 9.2 0.0002 34.0 8.0 56 103-158 59-114 (246)
229 PF02403 Seryl_tRNA_N: Seryl-t 80.8 12 0.00026 28.5 7.6 57 103-159 41-100 (108)
230 PF05565 Sipho_Gp157: Siphovir 80.8 31 0.00068 28.6 11.6 81 74-158 5-86 (162)
231 KOG4360 Uncharacterized coiled 80.8 10 0.00023 37.9 8.9 49 94-142 211-263 (596)
232 PRK04325 hypothetical protein; 80.4 11 0.00024 27.8 7.0 49 105-153 9-57 (74)
233 PF13851 GAS: Growth-arrest sp 80.1 20 0.00043 31.0 9.6 41 99-139 87-127 (201)
234 KOG0977 Nuclear envelope prote 80.0 9.1 0.0002 38.3 8.3 37 123-159 152-188 (546)
235 PF13815 Dzip-like_N: Iguana/D 80.0 23 0.00051 27.8 9.3 96 61-159 14-113 (118)
236 PF08826 DMPK_coil: DMPK coile 79.9 12 0.00026 27.0 6.8 41 118-158 17-57 (61)
237 PF07798 DUF1640: Protein of u 79.9 19 0.0004 30.2 9.1 12 75-86 56-67 (177)
238 PF12709 Kinetocho_Slk19: Cent 79.7 9.4 0.0002 29.5 6.6 48 94-143 33-80 (87)
239 PRK05771 V-type ATP synthase s 79.6 15 0.00032 36.6 9.8 37 123-159 90-126 (646)
240 PF15294 Leu_zip: Leucine zipp 79.5 7.6 0.00017 35.7 7.1 47 108-154 128-174 (278)
241 PF05008 V-SNARE: Vesicle tran 79.4 20 0.00043 25.7 8.1 18 100-117 34-51 (79)
242 PRK02224 chromosome segregatio 79.3 23 0.0005 36.1 11.2 17 102-118 534-550 (880)
243 PF07888 CALCOCO1: Calcium bin 79.3 11 0.00023 37.8 8.5 8 96-103 137-144 (546)
244 KOG0995 Centromere-associated 79.2 9.6 0.00021 38.3 8.2 44 103-146 278-321 (581)
245 PRK10869 recombination and rep 79.2 25 0.00054 34.8 11.1 90 70-166 296-393 (553)
246 PRK08147 flgK flagellar hook-a 79.1 20 0.00043 35.1 10.4 77 74-152 109-186 (547)
247 TIGR03185 DNA_S_dndD DNA sulfu 79.1 25 0.00054 35.1 11.2 41 100-140 423-463 (650)
248 PF10146 zf-C4H2: Zinc finger- 78.9 24 0.00052 31.4 9.9 61 98-158 32-99 (230)
249 KOG1962 B-cell receptor-associ 78.9 9 0.00019 34.1 7.2 38 113-150 173-210 (216)
250 PF09738 DUF2051: Double stran 78.8 13 0.00029 34.4 8.5 62 93-158 104-165 (302)
251 TIGR03689 pup_AAA proteasome A 78.8 6.1 0.00013 39.0 6.7 45 109-167 5-49 (512)
252 TIGR01834 PHA_synth_III_E poly 78.7 14 0.0003 34.7 8.7 57 98-154 256-317 (320)
253 PF02388 FemAB: FemAB family; 78.7 15 0.00033 34.6 9.1 77 77-157 218-297 (406)
254 TIGR01069 mutS2 MutS2 family p 78.6 12 0.00025 38.7 8.9 6 188-193 656-661 (771)
255 PRK08471 flgK flagellar hook-a 78.4 20 0.00042 36.1 10.2 77 74-152 113-190 (613)
256 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.4 30 0.00065 27.7 9.5 27 131-157 103-129 (132)
257 PF05377 FlaC_arch: Flagella a 78.4 11 0.00025 26.8 6.2 29 123-151 11-39 (55)
258 PF00038 Filament: Intermediat 78.3 25 0.00055 31.2 10.0 29 125-153 215-243 (312)
259 KOG1029 Endocytic adaptor prot 78.2 16 0.00035 38.5 9.6 49 113-161 473-521 (1118)
260 KOG3433 Protein involved in me 78.1 16 0.00035 32.1 8.3 51 81-132 47-108 (203)
261 PRK14127 cell division protein 77.9 6.2 0.00013 31.5 5.4 39 105-143 30-68 (109)
262 PF00769 ERM: Ezrin/radixin/mo 77.8 12 0.00026 33.2 7.8 50 110-159 80-129 (246)
263 PF13870 DUF4201: Domain of un 77.8 27 0.00059 29.0 9.5 68 95-162 74-141 (177)
264 PF04325 DUF465: Protein of un 77.7 10 0.00023 25.5 5.8 21 134-154 28-48 (49)
265 PF10498 IFT57: Intra-flagella 77.6 16 0.00035 34.5 8.9 30 129-158 290-319 (359)
266 PF09726 Macoilin: Transmembra 77.6 36 0.00077 35.0 11.9 35 106-140 546-580 (697)
267 PF06103 DUF948: Bacterial pro 77.2 27 0.00058 25.8 9.7 34 107-140 21-54 (90)
268 TIGR00606 rad50 rad50. This fa 77.1 22 0.00048 38.5 10.8 85 71-159 992-1087(1311)
269 KOG3156 Uncharacterized membra 77.0 20 0.00043 32.1 8.7 25 134-158 117-141 (220)
270 PRK05431 seryl-tRNA synthetase 76.9 14 0.00031 35.2 8.5 51 108-158 38-98 (425)
271 PF12711 Kinesin-relat_1: Kine 76.8 20 0.00044 27.6 7.7 9 78-86 4-12 (86)
272 PRK04778 septation ring format 76.6 42 0.0009 33.2 11.8 64 99-162 377-440 (569)
273 KOG2391 Vacuolar sorting prote 76.6 11 0.00024 35.8 7.5 32 121-152 241-272 (365)
274 COG1730 GIM5 Predicted prefold 76.6 14 0.0003 30.9 7.3 45 100-147 92-136 (145)
275 PRK14011 prefoldin subunit alp 76.5 19 0.00041 29.9 8.1 52 100-157 86-137 (144)
276 PF06103 DUF948: Bacterial pro 76.4 28 0.00061 25.7 9.8 42 102-143 23-64 (90)
277 KOG4005 Transcription factor X 76.3 14 0.0003 33.8 7.7 76 61-150 74-149 (292)
278 PF08961 DUF1875: Domain of un 76.2 0.84 1.8E-05 40.9 0.0 40 98-137 122-161 (243)
279 PF14389 Lzipper-MIP1: Leucine 76.1 28 0.00061 26.4 8.3 26 134-159 55-80 (88)
280 PF05377 FlaC_arch: Flagella a 76.0 25 0.00054 25.1 7.4 34 124-157 5-38 (55)
281 PRK00409 recombination and DNA 76.0 18 0.0004 37.3 9.5 10 149-158 586-595 (782)
282 PF13747 DUF4164: Domain of un 76.0 19 0.00042 27.4 7.4 11 108-118 11-21 (89)
283 TIGR00414 serS seryl-tRNA synt 75.9 12 0.00026 35.7 7.6 51 108-158 40-101 (418)
284 KOG0982 Centrosomal protein Nu 75.8 37 0.0008 33.5 10.9 37 120-156 298-334 (502)
285 PF04012 PspA_IM30: PspA/IM30 75.8 32 0.00068 29.3 9.6 56 102-157 95-150 (221)
286 PRK06799 flgK flagellar hook-a 75.6 31 0.00066 33.0 10.3 75 75-151 114-189 (431)
287 PRK06945 flgK flagellar hook-a 75.5 23 0.00049 35.9 9.8 77 75-152 110-186 (651)
288 PF09789 DUF2353: Uncharacteri 75.4 16 0.00035 34.2 8.2 55 101-159 126-180 (319)
289 PRK04654 sec-independent trans 75.3 30 0.00065 30.8 9.4 15 105-119 34-48 (214)
290 PRK12714 flgK flagellar hook-a 75.3 25 0.00054 35.4 10.0 77 74-151 108-184 (624)
291 PF06120 Phage_HK97_TLTM: Tail 75.2 20 0.00042 33.4 8.6 17 102-118 49-65 (301)
292 PF05529 Bap31: B-cell recepto 75.1 34 0.00073 28.7 9.4 61 99-159 116-187 (192)
293 PF04849 HAP1_N: HAP1 N-termin 75.0 19 0.00041 33.6 8.4 53 106-158 214-266 (306)
294 TIGR02169 SMC_prok_A chromosom 74.9 22 0.00048 36.6 9.8 12 147-158 483-494 (1164)
295 PRK00295 hypothetical protein; 74.8 19 0.00042 26.1 6.9 48 106-153 6-53 (68)
296 KOG3647 Predicted coiled-coil 74.7 14 0.0003 34.5 7.3 37 123-159 123-159 (338)
297 PRK00846 hypothetical protein; 74.6 28 0.00061 26.2 7.8 50 104-153 12-61 (77)
298 TIGR02977 phageshock_pspA phag 74.5 33 0.00072 29.7 9.4 51 105-155 99-149 (219)
299 PF09730 BicD: Microtubule-ass 74.4 18 0.0004 37.3 8.9 84 71-154 28-118 (717)
300 PF10392 COG5: Golgi transport 74.4 32 0.00069 27.5 8.7 78 74-154 37-114 (132)
301 PF03962 Mnd1: Mnd1 family; I 74.3 25 0.00054 30.1 8.5 17 9-25 39-57 (188)
302 COG2919 Septum formation initi 74.3 19 0.00042 28.4 7.4 44 105-155 43-86 (117)
303 PF04999 FtsL: Cell division p 74.2 21 0.00046 26.7 7.2 31 122-152 38-68 (97)
304 KOG3584 cAMP response element 74.1 3.3 7.2E-05 38.7 3.3 29 105-133 312-340 (348)
305 PF12709 Kinetocho_Slk19: Cent 73.8 40 0.00086 26.1 8.7 44 111-154 33-77 (87)
306 COG3879 Uncharacterized protei 73.7 16 0.00035 33.1 7.5 43 109-151 54-96 (247)
307 KOG0982 Centrosomal protein Nu 73.7 18 0.0004 35.5 8.3 52 107-158 299-350 (502)
308 PF12777 MT: Microtubule-bindi 73.6 29 0.00064 32.0 9.4 43 100-142 230-272 (344)
309 KOG4447 Transcription factor T 73.5 8.2 0.00018 33.0 5.2 47 67-113 29-75 (173)
310 PF13863 DUF4200: Domain of un 73.4 39 0.00085 26.1 8.8 30 129-158 77-106 (126)
311 PF09787 Golgin_A5: Golgin sub 73.4 13 0.00028 36.3 7.3 24 63-86 207-230 (511)
312 TIGR01242 26Sp45 26S proteasom 73.3 10 0.00022 34.7 6.3 27 136-162 16-42 (364)
313 PF14257 DUF4349: Domain of un 73.2 25 0.00054 30.9 8.5 49 109-157 136-193 (262)
314 PF11544 Spc42p: Spindle pole 73.1 38 0.00082 25.7 8.2 51 109-159 2-52 (76)
315 TIGR02338 gimC_beta prefoldin, 73.1 41 0.00089 26.0 9.9 17 142-158 90-106 (110)
316 KOG0614 cGMP-dependent protein 72.8 27 0.00059 35.5 9.4 45 107-158 26-70 (732)
317 COG1340 Uncharacterized archae 72.7 31 0.00067 32.1 9.2 12 147-158 83-94 (294)
318 PHA03247 large tegument protei 72.6 29 0.00064 40.9 10.5 92 77-168 917-1030(3151)
319 PRK08871 flgK flagellar hook-a 72.6 28 0.0006 35.2 9.6 77 74-151 111-187 (626)
320 PF02996 Prefoldin: Prefoldin 72.4 19 0.00042 27.5 6.8 38 100-140 75-112 (120)
321 PF12999 PRKCSH-like: Glucosid 72.4 22 0.00049 30.6 7.7 26 129-154 149-174 (176)
322 PF06698 DUF1192: Protein of u 72.3 6.8 0.00015 28.2 3.9 24 135-158 23-46 (59)
323 PF14988 DUF4515: Domain of un 72.3 27 0.00059 30.4 8.4 50 104-153 155-204 (206)
324 KOG4603 TBP-1 interacting prot 72.1 24 0.00051 30.9 7.8 51 109-159 90-142 (201)
325 TIGR01242 26Sp45 26S proteasom 72.1 9.5 0.00021 35.0 5.8 37 109-145 3-39 (364)
326 PF00261 Tropomyosin: Tropomyo 72.0 50 0.0011 28.9 10.0 12 125-136 175-186 (237)
327 KOG2751 Beclin-like protein [S 71.9 17 0.00038 35.5 7.6 20 68-87 112-131 (447)
328 PF12777 MT: Microtubule-bindi 71.8 28 0.0006 32.1 8.8 38 119-156 242-279 (344)
329 PF10168 Nup88: Nuclear pore c 71.8 32 0.00069 35.4 9.9 49 98-146 539-599 (717)
330 PF15290 Syntaphilin: Golgi-lo 71.7 27 0.00058 32.6 8.5 19 147-165 156-174 (305)
331 PF13600 DUF4140: N-terminal d 71.6 10 0.00022 28.7 5.0 29 123-151 74-102 (104)
332 PF10883 DUF2681: Protein of u 71.6 44 0.00096 25.8 8.7 41 100-140 11-51 (87)
333 PF03961 DUF342: Protein of un 71.6 29 0.00063 33.0 9.1 34 126-159 375-408 (451)
334 PF15369 KIAA1328: Uncharacter 71.5 30 0.00065 32.6 8.9 10 75-84 10-19 (328)
335 PRK10698 phage shock protein P 71.5 42 0.00091 29.4 9.4 51 104-154 98-148 (222)
336 PRK03947 prefoldin subunit alp 71.5 22 0.00047 28.4 7.1 45 100-147 92-136 (140)
337 PRK04863 mukB cell division pr 71.4 24 0.00052 39.2 9.5 88 69-157 948-1037(1486)
338 PF11068 YlqD: YlqD protein; 71.4 55 0.0012 26.8 10.2 66 94-159 16-86 (131)
339 PRK02793 phi X174 lysis protei 71.4 31 0.00067 25.3 7.3 49 105-153 8-56 (72)
340 cd00632 Prefoldin_beta Prefold 71.3 23 0.00049 27.1 6.9 44 97-140 55-98 (105)
341 KOG0964 Structural maintenance 71.0 34 0.00073 36.9 10.0 61 97-157 257-317 (1200)
342 PRK11415 hypothetical protein; 70.9 26 0.00056 25.8 6.8 40 113-152 18-65 (74)
343 KOG0946 ER-Golgi vesicle-tethe 70.8 34 0.00074 36.1 9.8 68 94-161 639-713 (970)
344 PF01166 TSC22: TSC-22/dip/bun 70.7 6.2 0.00013 28.5 3.3 29 120-148 15-43 (59)
345 KOG4571 Activating transcripti 70.6 16 0.00036 33.9 6.9 69 64-140 222-290 (294)
346 KOG4643 Uncharacterized coiled 70.6 29 0.00063 37.4 9.4 62 98-159 495-556 (1195)
347 PF04899 MbeD_MobD: MbeD/MobD 70.6 41 0.00088 24.9 8.9 54 109-162 7-64 (70)
348 TIGR02338 gimC_beta prefoldin, 70.6 29 0.00062 26.9 7.4 47 96-142 58-104 (110)
349 PF03961 DUF342: Protein of un 70.3 36 0.00078 32.5 9.4 21 131-151 387-407 (451)
350 PF03954 Lectin_N: Hepatic lec 70.2 12 0.00027 31.1 5.5 51 108-158 58-112 (138)
351 PF14257 DUF4349: Domain of un 70.1 34 0.00074 30.0 8.7 52 109-160 129-189 (262)
352 PRK03947 prefoldin subunit alp 69.9 23 0.0005 28.2 6.9 36 105-140 6-41 (140)
353 PF12252 SidE: Dot/Icm substra 69.9 29 0.00064 37.7 9.3 80 79-159 1079-1172(1439)
354 PLN02678 seryl-tRNA synthetase 69.9 35 0.00075 33.2 9.3 29 130-158 75-103 (448)
355 PF05600 DUF773: Protein of un 69.6 25 0.00055 34.6 8.4 48 105-152 432-479 (507)
356 KOG0804 Cytoplasmic Zn-finger 69.4 30 0.00066 34.1 8.7 17 143-159 431-447 (493)
357 PF09432 THP2: Tho complex sub 69.3 33 0.00072 28.5 7.7 53 94-146 52-105 (132)
358 PRK12715 flgK flagellar hook-a 68.9 37 0.00079 34.5 9.6 75 73-149 107-182 (649)
359 PF09755 DUF2046: Uncharacteri 68.8 34 0.00074 32.0 8.6 61 106-166 136-211 (310)
360 PF08286 Spc24: Spc24 subunit 68.7 1.7 3.7E-05 34.3 0.2 42 117-158 4-45 (118)
361 KOG1854 Mitochondrial inner me 68.7 61 0.0013 33.3 10.9 49 64-118 281-338 (657)
362 KOG1853 LIS1-interacting prote 68.7 36 0.00078 31.6 8.6 54 100-153 54-111 (333)
363 PF01920 Prefoldin_2: Prefoldi 68.7 19 0.00042 26.6 5.9 68 74-142 30-99 (106)
364 PF10779 XhlA: Haemolysin XhlA 68.5 42 0.0009 24.2 7.6 25 109-133 3-27 (71)
365 KOG4643 Uncharacterized coiled 68.4 35 0.00076 36.9 9.5 62 97-158 393-454 (1195)
366 TIGR00634 recN DNA repair prot 68.4 63 0.0014 31.8 10.9 91 69-166 300-398 (563)
367 KOG0161 Myosin class II heavy 68.3 30 0.00066 39.5 9.5 55 104-158 1483-1537(1930)
368 PF04420 CHD5: CHD5-like prote 68.0 12 0.00027 31.1 5.2 22 101-122 36-57 (161)
369 PF10205 KLRAQ: Predicted coil 68.0 60 0.0013 25.8 9.3 43 116-158 30-72 (102)
370 TIGR00634 recN DNA repair prot 68.0 19 0.00042 35.3 7.3 50 96-146 146-195 (563)
371 PF05701 WEMBL: Weak chloropla 68.0 38 0.00083 33.2 9.3 43 116-158 306-355 (522)
372 PF05600 DUF773: Protein of un 67.9 43 0.00093 33.0 9.6 59 100-158 434-492 (507)
373 PRK15396 murein lipoprotein; P 67.9 42 0.0009 25.3 7.5 47 112-158 25-71 (78)
374 PF05701 WEMBL: Weak chloropla 67.9 38 0.00083 33.2 9.3 48 110-157 286-333 (522)
375 TIGR01843 type_I_hlyD type I s 67.9 95 0.0021 28.1 12.0 31 137-167 250-282 (423)
376 PF05384 DegS: Sensor protein 67.8 60 0.0013 27.5 9.2 56 99-157 3-58 (159)
377 PF13118 DUF3972: Protein of u 67.6 65 0.0014 26.5 9.1 62 98-159 63-125 (126)
378 KOG3650 Predicted coiled-coil 67.4 17 0.00038 29.1 5.6 65 103-167 47-111 (120)
379 COG5509 Uncharacterized small 67.3 9.8 0.00021 27.8 3.8 21 137-157 29-49 (65)
380 KOG1937 Uncharacterized conser 67.3 58 0.0013 32.3 10.2 29 100-128 288-316 (521)
381 PF03993 DUF349: Domain of Unk 67.2 24 0.00052 24.8 5.9 68 74-159 2-69 (77)
382 PF10498 IFT57: Intra-flagella 67.1 51 0.0011 31.2 9.6 7 20-26 116-122 (359)
383 KOG3192 Mitochondrial J-type c 67.0 8.4 0.00018 33.1 4.0 61 73-149 59-121 (168)
384 PF10267 Tmemb_cc2: Predicted 66.9 48 0.001 31.9 9.5 22 65-86 204-225 (395)
385 PRK02119 hypothetical protein; 66.9 48 0.001 24.4 8.8 51 103-153 7-57 (73)
386 COG4467 Regulator of replicati 66.9 36 0.00078 27.6 7.3 54 94-151 1-54 (114)
387 PF14523 Syntaxin_2: Syntaxin- 66.9 46 0.001 24.6 7.7 13 74-86 7-19 (102)
388 KOG2185 Predicted RNA-processi 66.8 47 0.001 32.6 9.4 74 47-120 352-435 (486)
389 KOG0971 Microtubule-associated 66.8 30 0.00064 37.2 8.5 13 107-119 370-382 (1243)
390 PF06216 RTBV_P46: Rice tungro 66.7 38 0.00082 31.5 8.3 60 94-153 53-112 (389)
391 PF05164 ZapA: Cell division p 66.7 46 0.00099 24.0 7.6 37 72-112 27-63 (89)
392 KOG1029 Endocytic adaptor prot 66.7 60 0.0013 34.5 10.6 59 94-152 527-589 (1118)
393 PF07047 OPA3: Optic atrophy 3 66.4 48 0.001 26.8 8.2 12 62-73 41-52 (134)
394 KOG2751 Beclin-like protein [S 66.4 18 0.00038 35.4 6.5 50 107-156 178-227 (447)
395 PF01763 Herpes_UL6: Herpesvir 66.3 21 0.00045 35.9 7.1 44 98-141 363-406 (557)
396 PF15458 NTR2: Nineteen comple 66.1 30 0.00065 31.0 7.5 48 99-156 205-252 (254)
397 TIGR02977 phageshock_pspA phag 66.0 64 0.0014 27.9 9.4 60 99-158 86-145 (219)
398 TIGR03185 DNA_S_dndD DNA sulfu 66.0 28 0.00062 34.7 8.1 9 96-104 167-175 (650)
399 PF05700 BCAS2: Breast carcino 65.9 78 0.0017 27.5 9.9 29 130-158 179-207 (221)
400 COG5185 HEC1 Protein involved 65.7 31 0.00067 34.5 8.0 60 98-160 482-546 (622)
401 PRK09973 putative outer membra 65.6 42 0.00092 25.8 7.2 45 106-150 25-69 (85)
402 COG1792 MreC Cell shape-determ 65.5 41 0.00088 30.6 8.4 25 134-158 84-108 (284)
403 PF06785 UPF0242: Uncharacteri 65.3 52 0.0011 31.6 9.1 27 130-156 131-157 (401)
404 KOG0804 Cytoplasmic Zn-finger 65.0 1.1E+02 0.0024 30.4 11.5 9 143-151 438-446 (493)
405 PF07412 Geminin: Geminin; In 64.6 23 0.0005 31.2 6.3 47 105-151 107-157 (200)
406 COG1792 MreC Cell shape-determ 64.4 28 0.00061 31.7 7.1 20 132-151 89-108 (284)
407 PF08781 DP: Transcription fac 64.4 30 0.00064 28.9 6.7 44 113-156 2-45 (142)
408 PF03980 Nnf1: Nnf1 ; InterPr 64.4 17 0.00036 28.0 4.9 20 63-86 24-43 (109)
409 KOG0979 Structural maintenance 64.3 49 0.0011 35.6 9.6 84 65-162 624-707 (1072)
410 PLN02320 seryl-tRNA synthetase 64.2 1E+02 0.0023 30.6 11.4 51 108-158 103-162 (502)
411 PLN03188 kinesin-12 family pro 63.8 45 0.00098 36.7 9.4 59 95-153 1145-1238(1320)
412 TIGR02680 conserved hypothetic 63.7 52 0.0011 36.1 10.1 22 97-118 222-243 (1353)
413 PF08286 Spc24: Spc24 subunit 63.6 2.5 5.4E-05 33.3 0.2 42 108-149 2-43 (118)
414 PF05103 DivIVA: DivIVA protei 63.5 4.2 9E-05 31.6 1.4 43 99-141 26-68 (131)
415 PRK14160 heat shock protein Gr 63.3 39 0.00085 29.9 7.6 7 205-211 198-204 (211)
416 PF14193 DUF4315: Domain of un 63.3 44 0.00096 25.4 6.9 34 107-140 3-36 (83)
417 PF00261 Tropomyosin: Tropomyo 63.1 95 0.0021 27.1 10.0 8 149-156 178-185 (237)
418 KOG4673 Transcription factor T 63.1 38 0.00081 35.4 8.3 53 106-158 867-922 (961)
419 PF08912 Rho_Binding: Rho Bind 63.0 46 0.001 24.7 6.7 32 111-142 2-33 (69)
420 PF10482 CtIP_N: Tumour-suppre 63.0 83 0.0018 25.7 9.4 76 63-149 44-119 (120)
421 PRK09343 prefoldin subunit bet 63.0 76 0.0016 25.2 9.8 37 123-159 75-111 (121)
422 PRK14148 heat shock protein Gr 62.8 24 0.00053 30.7 6.2 32 121-152 42-73 (195)
423 KOG4370 Ral-GTPase effector RL 62.8 27 0.00059 34.4 7.0 45 109-153 410-454 (514)
424 TIGR00293 prefoldin, archaeal 62.8 28 0.0006 27.1 6.0 34 108-141 2-35 (126)
425 PF10168 Nup88: Nuclear pore c 62.6 46 0.00099 34.3 8.9 54 99-152 537-591 (717)
426 COG4238 Murein lipoprotein [Ce 62.6 67 0.0014 24.4 7.6 46 107-152 27-72 (78)
427 PRK04863 mukB cell division pr 62.5 51 0.0011 36.8 9.8 16 71-86 308-323 (1486)
428 PF06160 EzrA: Septation ring 62.5 1.3E+02 0.0027 29.9 11.8 94 62-162 338-436 (560)
429 COG1196 Smc Chromosome segrega 62.5 51 0.0011 35.4 9.6 9 99-107 797-805 (1163)
430 PRK10947 global DNA-binding tr 62.4 61 0.0013 26.7 8.1 43 102-146 6-48 (135)
431 PF10481 CENP-F_N: Cenp-F N-te 62.4 33 0.00072 31.9 7.1 33 96-128 9-41 (307)
432 PF14645 Chibby: Chibby family 62.4 30 0.00065 27.7 6.2 35 108-142 74-108 (116)
433 KOG3540 Beta amyloid precursor 62.3 1.2E+02 0.0026 30.6 11.3 58 63-120 254-311 (615)
434 COG1842 PspA Phage shock prote 62.3 77 0.0017 28.1 9.3 56 97-152 84-139 (225)
435 KOG0243 Kinesin-like protein [ 62.3 21 0.00045 38.4 6.5 27 92-118 398-424 (1041)
436 PF11853 DUF3373: Protein of u 62.2 7.9 0.00017 38.2 3.3 27 127-153 32-58 (489)
437 PF03233 Cauli_AT: Aphid trans 62.1 81 0.0018 27.1 9.0 63 75-140 85-156 (163)
438 PF07334 IFP_35_N: Interferon- 62.1 17 0.00037 27.5 4.4 22 116-137 4-25 (76)
439 KOG4343 bZIP transcription fac 62.1 38 0.00083 34.3 8.0 42 105-146 302-343 (655)
440 TIGR03007 pepcterm_ChnLen poly 62.0 50 0.0011 31.4 8.7 10 189-198 453-462 (498)
441 PF13600 DUF4140: N-terminal d 62.0 14 0.0003 28.0 4.0 23 130-152 74-96 (104)
442 TIGR01843 type_I_hlyD type I s 61.8 52 0.0011 29.8 8.4 6 81-86 99-104 (423)
443 smart00340 HALZ homeobox assoc 61.8 35 0.00075 23.3 5.4 22 129-150 8-29 (44)
444 PLN02678 seryl-tRNA synthetase 61.7 1E+02 0.0022 30.1 10.7 30 123-152 75-104 (448)
445 KOG4360 Uncharacterized coiled 61.3 1E+02 0.0023 31.1 10.8 82 74-159 209-301 (596)
446 PRK09343 prefoldin subunit bet 61.3 43 0.00094 26.6 6.9 33 105-137 71-103 (121)
447 TIGR00020 prfB peptide chain r 61.2 97 0.0021 29.5 10.3 81 73-153 26-112 (364)
448 PRK00736 hypothetical protein; 61.0 61 0.0013 23.5 8.3 50 105-154 5-54 (68)
449 PF04871 Uso1_p115_C: Uso1 / p 61.0 72 0.0016 26.0 8.3 6 146-151 83-88 (136)
450 cd07666 BAR_SNX7 The Bin/Amphi 60.9 68 0.0015 28.8 8.8 36 123-158 160-195 (243)
451 TIGR00019 prfA peptide chain r 60.9 1.6E+02 0.0034 28.1 11.9 25 136-160 78-102 (360)
452 PRK01156 chromosome segregatio 60.7 65 0.0014 33.1 9.7 25 130-154 215-239 (895)
453 PF07412 Geminin: Geminin; In 60.7 31 0.00067 30.4 6.4 50 99-152 119-168 (200)
454 KOG0837 Transcriptional activa 60.6 21 0.00045 32.9 5.5 40 120-159 228-267 (279)
455 KOG4603 TBP-1 interacting prot 60.6 60 0.0013 28.5 8.0 26 121-146 118-143 (201)
456 PF10482 CtIP_N: Tumour-suppre 60.5 48 0.001 27.1 7.0 23 135-157 98-120 (120)
457 PF06705 SF-assemblin: SF-asse 60.4 91 0.002 27.3 9.4 28 101-128 81-108 (247)
458 PF13514 AAA_27: AAA domain 60.3 70 0.0015 34.1 10.1 61 94-154 146-209 (1111)
459 cd00890 Prefoldin Prefoldin is 60.2 44 0.00095 25.6 6.7 34 108-141 90-123 (129)
460 PF02996 Prefoldin: Prefoldin 60.2 34 0.00075 26.0 6.0 45 110-154 75-119 (120)
461 PLN02320 seryl-tRNA synthetase 60.1 62 0.0013 32.2 9.1 31 123-153 134-164 (502)
462 PF15058 Speriolin_N: Sperioli 60.1 43 0.00094 29.6 7.2 19 110-128 10-28 (200)
463 cd00632 Prefoldin_beta Prefold 60.0 75 0.0016 24.2 10.0 47 106-152 57-103 (105)
464 PF01486 K-box: K-box region; 60.0 42 0.00092 25.4 6.4 31 120-150 69-99 (100)
465 PF04859 DUF641: Plant protein 59.9 98 0.0021 25.5 9.0 75 64-145 49-127 (131)
466 PF15619 Lebercilin: Ciliary p 59.8 1E+02 0.0023 26.6 9.5 48 99-146 62-109 (194)
467 PRK10865 protein disaggregatio 59.6 1.2E+02 0.0027 31.6 11.6 25 95-119 407-431 (857)
468 PF07352 Phage_Mu_Gam: Bacteri 59.6 86 0.0019 25.5 8.6 54 100-159 5-58 (149)
469 PRK05431 seryl-tRNA synthetase 59.2 55 0.0012 31.3 8.4 30 123-152 70-99 (425)
470 PRK14161 heat shock protein Gr 59.2 49 0.0011 28.3 7.3 42 97-138 11-52 (178)
471 KOG0249 LAR-interacting protei 59.1 66 0.0014 33.8 9.2 55 99-153 203-257 (916)
472 COG1345 FliD Flagellar capping 59.0 49 0.0011 32.6 8.2 90 67-160 373-481 (483)
473 KOG0976 Rho/Rac1-interacting s 59.0 1.1E+02 0.0024 32.8 10.8 47 111-157 91-137 (1265)
474 KOG2629 Peroxisomal membrane a 58.8 74 0.0016 29.8 8.8 57 99-158 130-186 (300)
475 PF06548 Kinesin-related: Kine 58.8 1E+02 0.0022 30.6 10.1 60 95-154 375-469 (488)
476 PF14645 Chibby: Chibby family 58.6 50 0.0011 26.4 6.8 47 110-156 69-115 (116)
477 PF08898 DUF1843: Domain of un 58.4 30 0.00064 24.6 4.8 23 132-154 30-52 (53)
478 cd00890 Prefoldin Prefoldin is 58.3 54 0.0012 25.1 6.9 29 128-156 96-124 (129)
479 PF08657 DASH_Spc34: DASH comp 58.2 84 0.0018 28.5 9.0 38 123-160 177-214 (259)
480 smart00340 HALZ homeobox assoc 58.0 25 0.00053 24.0 4.2 26 115-140 8-33 (44)
481 PF04420 CHD5: CHD5-like prote 57.9 16 0.00035 30.4 4.1 43 116-158 37-91 (161)
482 PF08700 Vps51: Vps51/Vps67; 57.9 68 0.0015 23.1 8.6 22 100-121 21-42 (87)
483 PRK00578 prfB peptide chain re 57.8 1.3E+02 0.0028 28.7 10.5 17 137-153 96-112 (367)
484 PF10549 ORF11CD3: ORF11CD3 do 57.6 67 0.0015 22.9 7.0 27 131-157 25-51 (57)
485 PF09738 DUF2051: Double stran 57.6 65 0.0014 29.9 8.3 59 97-158 114-172 (302)
486 PRK10361 DNA recombination pro 57.6 97 0.0021 30.6 9.9 65 96-160 44-119 (475)
487 cd07627 BAR_Vps5p The Bin/Amph 57.5 1.2E+02 0.0025 26.1 9.5 58 101-158 111-175 (216)
488 PF05557 MAD: Mitotic checkpoi 57.4 69 0.0015 32.5 9.2 55 105-159 503-585 (722)
489 PRK10328 DNA binding protein, 57.3 82 0.0018 25.9 8.0 58 99-159 4-61 (134)
490 PF10212 TTKRSYEDQ: Predicted 57.3 1.5E+02 0.0033 29.7 11.2 86 68-160 407-500 (518)
491 PF02344 Myc-LZ: Myc leucine z 57.3 36 0.00079 21.8 4.6 28 112-139 1-28 (32)
492 PF09731 Mitofilin: Mitochondr 57.1 1.5E+02 0.0033 28.9 11.2 86 73-158 226-314 (582)
493 PRK09413 IS2 repressor TnpA; R 57.0 28 0.00061 27.2 5.1 32 119-150 71-102 (121)
494 PF06320 GCN5L1: GCN5-like pro 57.0 1E+02 0.0022 24.7 9.7 63 97-159 25-87 (121)
495 PF10018 Med4: Vitamin-D-recep 57.0 1.2E+02 0.0026 25.6 9.8 61 98-159 2-62 (188)
496 PF15397 DUF4618: Domain of un 57.0 73 0.0016 29.1 8.4 52 108-159 70-132 (258)
497 PRK11020 hypothetical protein; 57.0 72 0.0016 26.0 7.4 46 110-155 3-53 (118)
498 TIGR01005 eps_transp_fam exopo 56.9 1.6E+02 0.0035 29.7 11.6 78 69-160 294-372 (754)
499 PF10046 BLOC1_2: Biogenesis o 56.8 80 0.0017 24.2 7.5 58 95-152 42-99 (99)
500 COG1730 GIM5 Predicted prefold 56.8 50 0.0011 27.6 6.8 41 107-147 8-48 (145)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.50 E-value=1.6e-14 Score=99.33 Aligned_cols=51 Identities=33% Similarity=0.483 Sum_probs=47.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCCC---CCCCCChhhHHHHHHHHHHHHH
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCILEPG---RPARTDKPAILDDAIRVLNQLR 111 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslLPP~---~~~K~DKasIL~dAI~yIk~Lr 111 (214)
+.+|+.+||+||++||++|.+|+.+||+. ...|.||++||..||+||++|+
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 46799999999999999999999999885 4579999999999999999996
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.49 E-value=4.1e-14 Score=97.33 Aligned_cols=55 Identities=31% Similarity=0.442 Sum_probs=49.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCChhhHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGR-PARTDKPAILDDAIRVLNQLRTES 114 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~-~~K~DKasIL~dAI~yIk~Lr~~v 114 (214)
++.+|+.+||+||++||++|.+|+++||+.. ..|.||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999997752 469999999999999999999875
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.44 E-value=2.8e-13 Score=91.73 Aligned_cols=51 Identities=31% Similarity=0.444 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCChhhHHHHHHHHHHHHHHHHH
Q 028060 65 ACREKLRRERLNDRFLDLSCILEPGR-PARTDKPAILDDAIRVLNQLRTESQ 115 (214)
Q Consensus 65 ~~~ERkRRdkLN~~F~~LrslLPP~~-~~K~DKasIL~dAI~yIk~Lr~~vq 115 (214)
+.+||+||++||++|..|+++||+.. ..|.||++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999998653 5689999999999999999998875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.38 E-value=1.1e-12 Score=123.32 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=68.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGRP--ARTDKPAILDDAIRVLNQLRTESQELK---ETNEKLQEEIKSLKAE 134 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~--~K~DKasIL~dAI~yIk~Lr~~vq~L~---~~n~~L~~ei~eL~~e 134 (214)
+|.+|++.||+||++||++|.+|+.|||.+.. .|..|.+||..+++||+.|++..++.. ...+.|+..+++|..+
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~r 312 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALR 312 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHH
Confidence 57899999999999999999999999987532 367899999999999999999877443 3345666777777777
Q ss_pred HHHHHHHHH
Q 028060 135 KNELREEKL 143 (214)
Q Consensus 135 knELr~Ek~ 143 (214)
+.||..+..
T Consensus 313 ieeLk~~~~ 321 (411)
T KOG1318|consen 313 IEELKSEAG 321 (411)
T ss_pred HHHHHHHHH
Confidence 777776665
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.15 E-value=1.2e-10 Score=100.55 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGRP-----ARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~-----~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
|+.+|-.+|++|||.||..+..|..+||.+.+ .|++||.||.++|+||.+|..+..+-+++..+|+.++..|+.-
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iI 141 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKII 141 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999976543 3889999999999999999999999999999999999999888
Q ss_pred HHHHH
Q 028060 135 KNELR 139 (214)
Q Consensus 135 knELr 139 (214)
+++..
T Consensus 142 k~~YE 146 (229)
T KOG1319|consen 142 KVNYE 146 (229)
T ss_pred HHHHH
Confidence 88763
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=99.05 E-value=1.6e-09 Score=95.71 Aligned_cols=84 Identities=26% Similarity=0.292 Sum_probs=70.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 56 DSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTD-KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 56 ~~~~~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~D-KasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
...+.+.+||..||+||+.|.++|..|+..||.+...+.. -++||.+|++||+.|+.+........+.|..+-..|+++
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~r 134 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKAR 134 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999886654444 589999999999999998888887777777777777777
Q ss_pred HHHHH
Q 028060 135 KNELR 139 (214)
Q Consensus 135 knELr 139 (214)
+++|.
T Consensus 135 l~ql~ 139 (232)
T KOG2483|consen 135 LEQLS 139 (232)
T ss_pred HHHhc
Confidence 77664
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.51 E-value=6.3e-08 Score=86.29 Aligned_cols=59 Identities=29% Similarity=0.342 Sum_probs=51.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhhcCC------CCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 028060 58 CSRPGSKACREKLRRERLNDRFLDLSCILEP------GRPARTDKPAILDDAIRVLNQLRTESQE 116 (214)
Q Consensus 58 ~~~~~sH~~~ERkRRdkLN~~F~~LrslLPP------~~~~K~DKasIL~dAI~yIk~Lr~~vq~ 116 (214)
+.+++.|-..||+||++||+++.+|+.+|+. ...+|.+||-||.-|++|+++|+...+.
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 4578999999999999999999999999954 1237899999999999999999985433
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.34 E-value=5e-07 Score=91.42 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCILEPGRP---ARTDKPAILDDAIRVLNQLRTE 113 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~---~K~DKasIL~dAI~yIk~Lr~~ 113 (214)
+..|+..||+|||++|..+.||.++| |+.. .|+||-+||..||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mv-p~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMV-PTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhh-hcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999 4455 7999999999999999988875
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.32 E-value=5.7e-07 Score=91.77 Aligned_cols=77 Identities=26% Similarity=0.348 Sum_probs=68.3
Q ss_pred CCccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 48 NTRKRARSDSCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQE 126 (214)
Q Consensus 48 ~~~kR~r~~~~~~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ 126 (214)
.+.+|...+ ..+|..||..||+-|.-|||++.+|+.+||. ...|..|.+.|..||+||++|+...+.++.++..++.
T Consensus 265 ~Pi~rl~~G-~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g-~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~t 341 (953)
T KOG2588|consen 265 KPIKRLLPG-GEKRTAHNIIEKRYRSSINDKIIELKDLVPG-TEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLRT 341 (953)
T ss_pred CchhhcCCC-CcccchhhHHHHHhhcchhHHHHHHHHhcCc-cHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhhh
Confidence 456666655 5789999999999999999999999999954 6679999999999999999999999999999988773
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.27 E-value=6.4e-07 Score=82.29 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=58.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKS 130 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~e 130 (214)
+.--|+-||+|=.-||-.|..||++||-...-|.+||+||..+.+||.+|+.+.-+|-.+|.+|+..+.+
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E 130 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLE 130 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhh
Confidence 4456788999999999999999999987666799999999999999999999877777777666554433
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.78 E-value=5.9e-05 Score=67.94 Aligned_cols=62 Identities=29% Similarity=0.345 Sum_probs=50.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028060 57 SCSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 57 ~~~~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~ 118 (214)
..+|+..--++||+|=.|+|+.|..|...-=+.-....-|+.||-.||+||..|+.-++++.
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~ 176 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQD 176 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677778899999999999999999876633223579999999999999999987655543
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.59 E-value=7.8e-05 Score=64.81 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=50.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028060 59 SRPGSKACREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 59 ~~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~--~~K~DKasIL~dAI~yIk~Lr~~vq~L~ 118 (214)
..+..++.+||.|=..+|..|.+||..||..- ..|.+|+.+|--||.||+.|..-++.-.
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 35677888899999999999999999998644 3589999999999999999987655443
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.57 E-value=0.00019 Score=55.28 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhhcCCCCC-CCCChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 72 RERLNDRFLDLSCILEPGRP-ARTDKPA---ILDDAIRVLNQLRTESQELKETNEKLQE 126 (214)
Q Consensus 72 RdkLN~~F~~LrslLPP~~~-~K~DKas---IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ 126 (214)
-|.||+.+..|+.+||..+. ...+|++ +|.+|+.||+.|+.+|..|.+...+|.+
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999976433 2345554 9999999999999999999887777654
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.39 E-value=0.0021 Score=47.60 Aligned_cols=55 Identities=38% Similarity=0.460 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++.+.+|+.+++++-.....|+.++.+|+.+.++|.+++..|+.+.++|+++-.+
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777666666666666666666655444
No 15
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=97.34 E-value=0.0024 Score=48.33 Aligned_cols=60 Identities=28% Similarity=0.493 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+.-||+-|.=|+-++++|+++|..|.+++..++..+.+|++|+..||.|-...+.-|.++
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888899999999999999999999988889999999999998888777777654
No 16
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.0053 Score=45.91 Aligned_cols=60 Identities=27% Similarity=0.492 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+.-||+-|.-|+-++++|++.|.+|..+...+......|+.|+..||.|-...+.-++++
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999988877777664
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.94 E-value=0.015 Score=43.15 Aligned_cols=57 Identities=32% Similarity=0.492 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+..||+-|..|+.+++.|+.+|..|.++...|+.+...|++|....+.-+..|-..+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999988887777777777777766665555554444333
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.80 E-value=0.011 Score=50.25 Aligned_cols=60 Identities=30% Similarity=0.486 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 100 LDDAIRVLNQLRTE---SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 100 L~dAI~yIk~Lr~~---vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|.+.|.|+..|+.. .+.++.+|..|+.++.+|..+..+|..|+..|+.+..-++..++++
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999974 6677788888888888888888888888888888888777777664
No 19
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.39 E-value=0.035 Score=42.09 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI-------LKADKEKLEQQLKVM 159 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~-------Lk~e~e~L~~qlk~~ 159 (214)
.+.+.+|+.+|++.-+...-|+.+|++|+.+.+.|.+|... |..+.+.|+++...+
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999998888888766 666666666665554
No 20
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.14 E-value=0.0037 Score=61.15 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=43.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCC-C-CCCChhhHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGR-P-ARTDKPAILDDAIRVLNQLRTESQE 116 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~-~-~K~DKasIL~dAI~yIk~Lr~~vq~ 116 (214)
||+..+.|||.|=..||+.|.||..+.--.. . ....|..||..||..|-.|+++|.+
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 4666777777777889999999999872211 0 1246788999999999999988754
No 21
>smart00338 BRLZ basic region leucin zipper.
Probab=95.97 E-value=0.03 Score=39.65 Aligned_cols=38 Identities=29% Similarity=0.521 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
.||.+|+.+++.|+.+|..|..++..|..++..|++++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999988888888888888777776654
No 22
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.87 E-value=0.073 Score=48.18 Aligned_cols=88 Identities=27% Similarity=0.368 Sum_probs=66.6
Q ss_pred CCch-hHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 61 PGSK-ACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 61 ~~sH-~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
+.+| ..-||.-|.||+++..+=- ..-.|-+-..+-=..|++|.++.+.|..+|+.|++..+.|-.+.+||+
T Consensus 60 RL~HLS~EEK~~RrKLKNRVAAQt--------aRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~ 131 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLKNRVAAQT--------ARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD 131 (292)
T ss_pred hhcccCHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445 4567778888888765422 223344444444466899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 140 EEKLILKADKEKLEQQL 156 (214)
Q Consensus 140 ~Ek~~Lk~e~e~L~~ql 156 (214)
.+...+.+++-.|.+|-
T Consensus 132 ~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 132 SELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 99999999888886554
No 23
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.77 E-value=0.11 Score=50.60 Aligned_cols=54 Identities=15% Similarity=0.339 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-+.+-+.++.+|+++.+.|+.+.+.+.+...++..+...|++|+..|+.|+++.
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666666666666666666666677666777777777777777653
No 24
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=95.71 E-value=0.05 Score=38.45 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
.||.+|+.++..|+.+|..|..++..|+.+...|..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666666666666665555555555554443
No 25
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.70 E-value=0.082 Score=41.88 Aligned_cols=53 Identities=28% Similarity=0.410 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAM 161 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~ 161 (214)
+|=..+.+|++....|.+++.+|+..+.+|-+||+.|+-|.+.|...|.....
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666777777777777777788888888888888877777766543
No 26
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=95.49 E-value=0.14 Score=51.50 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+...-.-+.+|+.+.|+|.++.+++..+|++|++++-.-+.|...||.++|.-|.|++.+
T Consensus 88 ~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 333446688999999999999999999999999999999999999999999999999885
No 27
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=95.32 E-value=0.14 Score=49.96 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA----------------------EKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~----------------------eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.|..-|.-+++||.+++.|..+|+.|.+|.+.|++ +..+|.++.+.|+..+..|+.||
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888888888888888877777765 33444444455555555556666
Q ss_pred HHh
Q 028060 157 KVM 159 (214)
Q Consensus 157 k~~ 159 (214)
+.+
T Consensus 140 ~~~ 142 (472)
T TIGR03752 140 AGV 142 (472)
T ss_pred hhc
Confidence 544
No 28
>PRK04406 hypothetical protein; Provisional
Probab=95.23 E-value=0.33 Score=36.14 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+..|..++..|+....-++.-|++|...+.+...+...|+.++..|.++++.+.
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346778888888888888888888889999999889999999999999998864
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.18 E-value=0.15 Score=40.65 Aligned_cols=51 Identities=25% Similarity=0.398 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+|=..+.+|++....|..++.+|+..+.+|-+||+.|+.|.+.|..-|...
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667777777777777788888888888888888888887777765
No 30
>PRK00846 hypothetical protein; Provisional
Probab=95.11 E-value=0.34 Score=36.54 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
.|..++..|+....-...-|++|...+.+.......|+.++..|..+|+.+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777777888888888888888899999999999999874
No 31
>PRK02119 hypothetical protein; Provisional
Probab=95.06 E-value=0.41 Score=35.36 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+..+..++..|+....-.+.-|++|...+.+.+.+...|+.++..|.++++.+.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456778888888888888888888899999999999999999999999998874
No 32
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.25 Score=37.08 Aligned_cols=52 Identities=31% Similarity=0.415 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
.+.+.+|+.++++.-....-|+-+|++|+.+.|.|..|.+.++...|.|+.+
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999998888888777666666543
No 33
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.96 E-value=0.017 Score=49.07 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=45.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRT 112 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~ 112 (214)
.++-|+.+||+|=.-||+.|..||.++|---..|.+|.-.|.-|.+||-.|-.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 45779999999999999999999999964333578888899999999998743
No 34
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.91 E-value=0.23 Score=39.37 Aligned_cols=50 Identities=34% Similarity=0.419 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
+-|.+|+.++..|-.+...|+..+.+|-.|-++|+-||..|+..+..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888999999999999999999999999999999999988888876
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.91 E-value=0.12 Score=42.88 Aligned_cols=55 Identities=38% Similarity=0.527 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEK--NELREEKLILKADKEKLEQQLKVMAM 161 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~ek--nELr~Ek~~Lk~e~e~L~~qlk~~~~ 161 (214)
|.+|+.++..|+.++..|..++..|.... .||+++...|+.|++.|+..|..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888887766 57888889999999999988887643
No 36
>PRK11637 AmiB activator; Provisional
Probab=94.80 E-value=0.43 Score=44.93 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.++...|..|..++..+..+...++.++..+..+++++..+...++.+++.++.+|+.
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555566666666666666665555555555544
No 37
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.63 E-value=0.33 Score=39.20 Aligned_cols=42 Identities=36% Similarity=0.551 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
..|..|..++..++.+...|+.++..|..+++++++|...|-
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555444444433
No 38
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=94.62 E-value=0.24 Score=35.92 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+|+.++..|+....-+..-+++|...+.+...+...|+.++..|..+++.+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777788777777788888888888888888888888888888888875
No 39
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.58 E-value=0.61 Score=34.35 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
.+..++..|+....-.+.-|++|...+.+.+.+...|+.++..|..+|+.+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3667777777777777777888888888888888889899999988888864
No 40
>PRK00295 hypothetical protein; Provisional
Probab=94.53 E-value=0.59 Score=34.05 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+..++..|+....-++.-|++|...+.+...+...|+.++..|..+++.+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677666666777777778888888888888888888888888874
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.41 E-value=0.32 Score=42.49 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 69 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 148 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e 148 (214)
|.|=.++...+.+|++-|.- |-++.-....+|+.++++++.....|+++.++|+.+..+++.|+..|+++
T Consensus 92 ~~rlp~le~el~~l~~~l~~----------~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNN----------IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446778888888887721 11222344455555555555555555555555566666666666666666
Q ss_pred HHHHHHHH
Q 028060 149 KEKLEQQL 156 (214)
Q Consensus 149 ~e~L~~ql 156 (214)
.+.++...
T Consensus 162 ~~~~~~~~ 169 (206)
T PRK10884 162 LDDKQRTI 169 (206)
T ss_pred HHHHHHHH
Confidence 66655444
No 42
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.26 E-value=0.4 Score=43.34 Aligned_cols=53 Identities=30% Similarity=0.467 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
...+++.+.+.+.++++.|..+..+|..+.++++++..+|..|+.+|+..++.
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666777777888888888888888888888888888888777766665
No 43
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=94.18 E-value=0.032 Score=55.38 Aligned_cols=60 Identities=28% Similarity=0.344 Sum_probs=46.3
Q ss_pred CccCCCCCCCCC----CCchhHHHHHHHHHHHHHHHHHhhhcC--CCCCCCCChhhHHHHHHHHHH
Q 028060 49 TRKRARSDSCSR----PGSKACREKLRRERLNDRFLDLSCILE--PGRPARTDKPAILDDAIRVLN 108 (214)
Q Consensus 49 ~~kR~r~~~~~~----~~sH~~~ERkRRdkLN~~F~~LrslLP--P~~~~K~DKasIL~dAI~yIk 108 (214)
+|||.|....-+ -.++.---|+-||+||.-+..|.++|| ++.++|.||.|||-=++.|++
T Consensus 10 srkRrrp~qk~rpp~~a~tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 10 SRKRRRPLQKQRPPPKALTKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhhccCCccccCCCccccccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 455555543322 246666678899999999999999995 456789999999999999986
No 44
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.17 E-value=0.91 Score=41.58 Aligned_cols=16 Identities=19% Similarity=0.491 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhhc
Q 028060 71 RRERLNDRFLDLSCIL 86 (214)
Q Consensus 71 RRdkLN~~F~~LrslL 86 (214)
|...|...+..|+.+.
T Consensus 185 ~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 185 RKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555566666655
No 45
>PRK00736 hypothetical protein; Provisional
Probab=94.03 E-value=0.87 Score=33.17 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+..++..|+....-++.-|++|...+.+...+...|+.++..|..+++.+.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666666677777777777777888888888888888764
No 46
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.99 E-value=0.65 Score=34.02 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|.+|-...++|+.+|..|.++...+..|...|.+.+..-.+.+|.+=..|++|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444455555555555555555555555555555555555555555555544
No 47
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.60 E-value=0.62 Score=42.44 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.|..+-.-.+.++.+++.|..+.+.++.++++++.+.+++..+...|+.+|+.|+..+.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666666666666666666666666666666666655554443
No 48
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=93.59 E-value=0.8 Score=33.84 Aligned_cols=56 Identities=32% Similarity=0.416 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
=+-|.+|..+-+.|....-.+...|+.|++...++..+...|+..++.++.++..+
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999888877888888888888888887788877777777766654
No 49
>PRK04325 hypothetical protein; Provisional
Probab=93.51 E-value=1.1 Score=33.06 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
..+..++..|+....-++.-|++|...+.+...+...|+.++..|..+|+.+.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777777888888888888888888888888888888874
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.47 E-value=1.8 Score=37.87 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
+..+.++|+.|++.|+.|.+.++.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333333
No 51
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.41 E-value=0.67 Score=45.37 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
-|.+.=.-..+|+++++.|+.+.+.+..+.+++..++++|.+|+..|+.+.+-+-.+.-
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 34445556778888888888888878888888888999999999999999876655543
No 52
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=0.48 Score=43.16 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+...=.-|++|+.+.+.++.+.+.|..++.++..+.++++.+...+++++.+|+.+++.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888999999999999999999999999999999999999999999999988763
No 53
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.32 E-value=1.5 Score=32.13 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
++.|..++.+|-.....|+++-..|+.+...+..|...|....+--.+.+.+|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999988888888888876
No 54
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=93.31 E-value=0.77 Score=36.68 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
+-|.+|..++..+-.+...|+..+.+|-.|..+|+-||..|+..++++++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677888888888899999999999999999999999999888888744
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.21 E-value=0.91 Score=38.56 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 70 LRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 70 kRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
+.|..+..++..+-.-+-- +-..+..--.-|..|+.++..|+.....|.+++++...-...|+||...|+.+.
T Consensus 88 r~~~el~~~L~~~~~~l~~-------l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 88 RSKGELAQQLVELNDELQE-------LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccch-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555411 111223333445556666666666666666666666666666666666665555
Q ss_pred HHHHHHHHH
Q 028060 150 EKLEQQLKV 158 (214)
Q Consensus 150 e~L~~qlk~ 158 (214)
.-++..+..
T Consensus 161 ~~~e~k~~~ 169 (194)
T PF08614_consen 161 NMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 56
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.17 E-value=1.5 Score=40.54 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 70 LRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 70 kRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
.|...|+..+..|+.+...- ..-..+.|..+-+-|..+..++.....+...++.+..+++..+++..++++.+..+|
T Consensus 179 ~~~~~L~~e~~~L~~~~~e~---~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 179 DRKDALEEELRQLKQLEDEL---EDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHhHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665331 112244444444444444444444444444444444444444444444444444333
Q ss_pred HHHH
Q 028060 150 EKLE 153 (214)
Q Consensus 150 e~L~ 153 (214)
..++
T Consensus 256 ~~ae 259 (312)
T smart00787 256 AEAE 259 (312)
T ss_pred HHHH
Confidence 3333
No 57
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.05 E-value=1.3 Score=35.77 Aligned_cols=66 Identities=29% Similarity=0.345 Sum_probs=46.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL---KADKEKLEQQLKVM 159 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~L---k~e~e~L~~qlk~~ 159 (214)
..-++++..=-.-|+++..++..|+.++..|..+-+.+..|+-.|..++..+ ..++..|+.+++.+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEEL 80 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777888888888888888888888778877777776666444 34555555555543
No 58
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=92.99 E-value=1.4 Score=37.77 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhc
Q 028060 70 LRRERLNDRFLDLSCIL 86 (214)
Q Consensus 70 kRRdkLN~~F~~LrslL 86 (214)
-|++-.|.+|.+|-.=|
T Consensus 59 vr~~ly~~~F~ELIRQV 75 (189)
T PF10211_consen 59 VREELYSQCFDELIRQV 75 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667777888777666
No 59
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.82 E-value=0.55 Score=43.17 Aligned_cols=19 Identities=37% Similarity=0.286 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 140 EEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 140 ~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+|...++.+++...++|..
T Consensus 113 ~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555544
No 60
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.80 E-value=1.6 Score=36.34 Aligned_cols=63 Identities=27% Similarity=0.441 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
.+.++.-+..+++....+..++..+..++.........+|++...++.+.+++..+...+...
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888899999999999999999999999999999999999999887655
No 61
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.57 E-value=0.53 Score=31.93 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 119 ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 119 ~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
...+.|...-+.|+.+..-|..|+..|++|+..|..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444443
No 62
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=92.56 E-value=0.21 Score=42.55 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTES 114 (214)
Q Consensus 101 ~dAI~yIk~Lr~~v 114 (214)
..||+.---|+.++
T Consensus 10 N~AIERnalLE~EL 23 (166)
T PF04880_consen 10 NQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 34444444444444
No 63
>PRK11637 AmiB activator; Provisional
Probab=92.56 E-value=1 Score=42.45 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+...++.++..+..+++++..+...++.++..++.++..
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444443
No 64
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=92.47 E-value=1.4 Score=30.98 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
...|+.++..|..+...|+.+...|+.++..|..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555555555555555555555443
No 65
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.44 E-value=0.97 Score=38.49 Aligned_cols=54 Identities=26% Similarity=0.328 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.....|+.+.+.|+.++..|+.+++.|..++..|..+...++.+.+-|-.-+.
T Consensus 96 ~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 96 NPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888888888888888888877765553
No 66
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.43 E-value=1.3 Score=42.26 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 71 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 71 RRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
++..+..++.+|+..+. .+-+-|...++-+..|+.++++|+.....+.+++++|..+++++..++..+..++.
T Consensus 331 ~~~~~~~~i~el~~~i~-------~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 331 EFNEQSKKLLELKNKIS-------TNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666661 11222777888888999999999988888888888888888888888887776665
Q ss_pred HHH
Q 028060 151 KLE 153 (214)
Q Consensus 151 ~L~ 153 (214)
..+
T Consensus 404 ~~~ 406 (562)
T PHA02562 404 HRG 406 (562)
T ss_pred HHH
Confidence 543
No 67
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=0.73 Score=43.56 Aligned_cols=44 Identities=45% Similarity=0.453 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
.+++.+.++.+...|++...||+.-++.|+.++|+|+||+..++
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666666666666666543
No 68
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.02 E-value=2.3 Score=45.81 Aligned_cols=83 Identities=24% Similarity=0.341 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhcCCCCCCCCChhh-HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 75 LNDRFLDLSCILEPGRPARTDKPA-ILDDAIRVLNQLRTESQELKET----------NEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 75 LN~~F~~LrslLPP~~~~K~DKas-IL~dAI~yIk~Lr~~vq~L~~~----------n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
+++++.+||..+|.-. ....|.. =+.+.+..|..|..++.+++.. ...+++.|.+++.|++++.++..
T Consensus 804 ~ee~~~~lr~~~~~l~-~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~ 882 (1293)
T KOG0996|consen 804 LEERVRKLRERIPELE-NRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAA 882 (1293)
T ss_pred HHHHHHHHHHhhHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677777777774311 1122221 2345566677777777777643 24566778889999999885555
Q ss_pred HHHHHHHHHHHHHHHh
Q 028060 144 ILKADKEKLEQQLKVM 159 (214)
Q Consensus 144 ~Lk~e~e~L~~qlk~~ 159 (214)
. |++++.|+.++..+
T Consensus 883 K-k~~i~~lq~~i~~i 897 (1293)
T KOG0996|consen 883 K-KARIKELQNKIDEI 897 (1293)
T ss_pred H-HHHHHHHHHHHHHh
Confidence 5 78888888777654
No 69
>COG5570 Uncharacterized small protein [Function unknown]
Probab=91.99 E-value=0.52 Score=33.53 Aligned_cols=46 Identities=33% Similarity=0.451 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLK-------AEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~-------~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
+...+..|++....|.++|++-. ..+.+|.-.|.+||.|||+|..|
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556667777777777775543 25678888899999999999875
No 70
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.90 E-value=2 Score=31.50 Aligned_cols=52 Identities=29% Similarity=0.349 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAE-------KNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~e-------knELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
|..|+.....+...++..+.+.+.|..| +.....++..|+.|++.|.++++.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444444 445677777888888888887765
No 71
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.85 E-value=2.4 Score=37.67 Aligned_cols=62 Identities=26% Similarity=0.292 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.+=.....+=+..|++++++.+.+.+.++.+...|+.+..++.+|-.+|..|-++|+.|+..
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 33344555566777778888888888888888888888888888888888888888888764
No 72
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.85 E-value=1.5 Score=35.17 Aligned_cols=59 Identities=36% Similarity=0.463 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN----ELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ekn----ELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..+|.-|..|+.+.+.++.....|+.+....+..+. .+..++..|+.+++.++..+..+
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888777777766655444433 24445555555555555544444
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.72 E-value=1.2 Score=40.84 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQEL 117 (214)
Q Consensus 104 I~yIk~Lr~~vq~L 117 (214)
..+...|+.++..|
T Consensus 183 ~~~~~~L~~e~~~L 196 (325)
T PF08317_consen 183 RERKAELEEELENL 196 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344433333
No 74
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.71 E-value=1.2 Score=39.17 Aligned_cols=6 Identities=67% Similarity=1.769 Sum_probs=3.6
Q ss_pred ccccCC
Q 028060 193 WQYLPP 198 (214)
Q Consensus 193 wq~~pp 198 (214)
|+|+|.
T Consensus 214 W~~l~~ 219 (251)
T PF11932_consen 214 WQWLPD 219 (251)
T ss_pred CeECCH
Confidence 666654
No 75
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=91.64 E-value=1.3 Score=37.37 Aligned_cols=30 Identities=37% Similarity=0.423 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
.+|+++|+.|+.+...|...||.|.+.|+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444443
No 76
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=91.62 E-value=1.6 Score=34.44 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
++.=+|+|+-..++ .|...+..|+++++.+..+..+++.+...++.++..|..++
T Consensus 63 LaQl~ieYLl~~q~---~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 63 LAQLSIEYLLHCQE---YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55677888776655 34445556666666666666666666666666666665554
No 77
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=91.47 E-value=3.3 Score=30.13 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.+.....+..+...++.++++++.+.++|+.|...|.. .++++.--
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~A 67 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIA 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHH
Confidence 34445555555566666666666666666666665543 44444433
No 78
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.34 E-value=2 Score=31.49 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.+.+-+.--+.....|..+++.....+...-.+.++|++|+..|+.|++.+.
T Consensus 16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444555555556666666667777777777777777777766554
No 79
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.32 E-value=1 Score=40.37 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
.=+..+-+..+..|.+|++|...+..++..|+.|...|+++..+|...++-+.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777788888888888888888888888888888877663
No 80
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=91.27 E-value=1.8 Score=35.90 Aligned_cols=42 Identities=31% Similarity=0.458 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 115 QELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 115 q~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.+|+.++..|..+++.|+.|..+++.|...++.-.+.|+.-.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357777777888888888888888888888877777777643
No 81
>smart00338 BRLZ basic region leucin zipper.
Probab=91.22 E-value=2.7 Score=29.57 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
..|+.++..|..+..+|+.+...|..++..|.++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 82
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.21 E-value=2.5 Score=35.11 Aligned_cols=43 Identities=35% Similarity=0.467 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-+.++..|++++..|..+++.|..|...+..+++.|.++++.+
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666666666655543
No 83
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=91.00 E-value=2.5 Score=30.22 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
|.+|-.+|+.|.....+|..++..|+.+.....+|-.+-...++.+-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56677777777777777777777777776666666665555554443
No 84
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=90.97 E-value=2.9 Score=39.67 Aligned_cols=90 Identities=29% Similarity=0.418 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHH
Q 028060 73 ERLNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA----EKNE-LREEKLILK 146 (214)
Q Consensus 73 dkLN~~F~~LrslLP-P~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~----eknE-Lr~Ek~~Lk 146 (214)
+.|-++|.+|..+|- |...+..++..-|++-..+|..+-....++++..+.|..--.-|.. +..| ..+|...++
T Consensus 10 ~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~ 89 (363)
T COG0216 10 ESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELE 89 (363)
T ss_pred HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 457789999999983 2222445666666666666666666665555554444432222222 2223 477889999
Q ss_pred HHHHHHHHHHHHhcCC
Q 028060 147 ADKEKLEQQLKVMAMP 162 (214)
Q Consensus 147 ~e~e~L~~qlk~~~~~ 162 (214)
.+++.|+.+|+.+-.|
T Consensus 90 ~~~~~le~~L~~lLlP 105 (363)
T COG0216 90 AKIEELEEELKILLLP 105 (363)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999988433
No 85
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.92 E-value=2.3 Score=36.72 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|..+=+..|+.|+.++..++..-......+.++.+|...|.+-...+..+.+.|+.+|+
T Consensus 21 IT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 21 ITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55566777888888777777554444444444444444444444444444444444443
No 86
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.91 E-value=1 Score=37.22 Aligned_cols=52 Identities=37% Similarity=0.510 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK--LILKADKEKLEQQLKV 158 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek--~~Lk~e~e~L~~qlk~ 158 (214)
+..|..++..|++++..|..+.+.|+.+++.|..+- ..|..+++.|+.++..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE 127 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443332 3344444444444443
No 87
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=90.83 E-value=2.1 Score=41.39 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 71 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRT---------------ESQELKETNEKLQEEIKSLKAEK 135 (214)
Q Consensus 71 RRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~---------------~vq~L~~~n~~L~~ei~eL~~ek 135 (214)
+...|.+.+.+|...+-- -.++.+.+..-+.+|..+.. .+.++.+......+++.++..++
T Consensus 72 ~~~~l~~~l~~l~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 72 RLAELRKQIRELEAELRD----LEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777766621 24677777777788877764 23445566666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 136 NELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 136 nELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
.++..+...++.++++|+++|..++
T Consensus 148 ~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 148 REAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777778888888888777654
No 88
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=90.75 E-value=0.11 Score=52.97 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=60.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 59 SRPGSKACREKLRRERLNDRFLDLSCILEPGR----PARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 59 ~~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~----~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
.+.++|.-+|.+||..+.-+|..|-++. .+. .-|+.++.-+..++.||.-+..+...+.++--.|..++.+|++-
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~-Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~ 728 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLS-SNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAV 728 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhc-cCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHH
Confidence 4689999999999999999999998887 422 13677778899999999988777766666666666666666665
Q ss_pred HHHH
Q 028060 135 KNEL 138 (214)
Q Consensus 135 knEL 138 (214)
++-+
T Consensus 729 ~~~~ 732 (856)
T KOG3582|consen 729 ISAC 732 (856)
T ss_pred HHHh
Confidence 5543
No 89
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=90.73 E-value=0.77 Score=31.49 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
...+.+|..++.+|..++..|+.++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555566666666666666655554
No 90
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.72 E-value=1.1 Score=30.46 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+..-..|+...+.|..+...|+.|++.|..++..
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 91
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.69 E-value=2.1 Score=37.47 Aligned_cols=49 Identities=33% Similarity=0.408 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
++..+|..++..+..+...|..++..|.+|+-.|..+.+.|+.+.+.++
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 3333333444555566666667777777777777777777776666653
No 92
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.67 E-value=3.2 Score=34.85 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 136 NELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 136 nELr~Ek~~Lk~e~e~L~~qlk 157 (214)
++++.+...|+.|+++|.++|+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 93
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=90.64 E-value=2.4 Score=34.16 Aligned_cols=63 Identities=27% Similarity=0.347 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
+......+..|..+...|.+.|-.++.++.+++.++.++.++...|+.+...+.++++.++.+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~ 91 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSN 91 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334445566677777777777777788888888888888888899999999998888887443
No 94
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=90.37 E-value=1.9 Score=39.03 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 114 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..+|++||++|++++.+|+++.+.+ ...|++|.++|+..|...
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~---~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEIL---TQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCc
Confidence 3456667777777766664444432 223677777777766543
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=1.8 Score=43.72 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
.-.+-|+.|+..++.|+.+|..|+.++.+|+.++.+|+.+...+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777788888777777777777777766665544
No 96
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.31 E-value=6.1 Score=31.96 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
...|..|..|-...+.-....+.|..++..+..+...|.....+|+.+++.++
T Consensus 34 ~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELE 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445555444444444444444444444444444444333344433333333
No 97
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.29 E-value=1.4 Score=40.23 Aligned_cols=56 Identities=13% Similarity=0.318 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCC
Q 028060 111 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM-AMPTGGYM 167 (214)
Q Consensus 111 r~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~-~~~p~g~~ 167 (214)
+..++.+..+.++++..+..|..+...|.....+-++|.||.+..|+++ ++-|+ ||
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPA-fm 224 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPA-FM 224 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-HH
Confidence 3334444444444444444555555555555555566666666666665 34433 44
No 98
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=90.25 E-value=1.1 Score=31.54 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
|..|++-+.+|+.+.+.-..+......++.+|+.||..|++++++++
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677766654444556778888999999999998888775
No 99
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.06 E-value=2 Score=34.59 Aligned_cols=49 Identities=29% Similarity=0.353 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+=.++..|+.....|-.++..|++.+.+|-+||..|+-|.++|..-|-.
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4456677777888888889999999999999999999999999876643
No 100
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.94 E-value=3.2 Score=36.46 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028060 143 LILKADKEKLEQQLKV 158 (214)
Q Consensus 143 ~~Lk~e~e~L~~qlk~ 158 (214)
..++++++.|++|+..
T Consensus 80 ~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 80 ASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444445444444
No 101
>PRK09039 hypothetical protein; Validated
Probab=89.78 E-value=2.4 Score=39.40 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+.+++-.-|..|+.+++.|+.+...|+.++..++.+..+.+.....|+.+++.+
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777778888877777777777777766666666666665555544
No 102
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=89.71 E-value=2.8 Score=29.71 Aligned_cols=42 Identities=38% Similarity=0.518 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+++.+...|+.++++++.+..+|+.+...|+...+.++...+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333444444444444445555555555555444555554444
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.63 E-value=3.5 Score=36.68 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKS 130 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~e 130 (214)
-.+|.+++++.+.|..+.....++++.
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrq 57 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQ 57 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666665554444433333
No 104
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.49 E-value=2.6 Score=37.78 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=54.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
.+-.+||.=.+.-=...|.++.+|++++..++.++..|+.|++.|+.+|..|-..+--|+.
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667788888888888999999999999999999999999999999999999877777765
No 105
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.35 E-value=2.4 Score=33.17 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKL--QEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L--~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.+..+++.++.+.+.| ..++..|+.++.+++-+...+.++++-+.+++
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555555555555 44455555555555555555555555444443
No 106
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=89.18 E-value=2.1 Score=38.66 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+|....+.....++++..+-+....++...+.+|..||..|+.+++.|++++..
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444434444444444445555555555555555544444
No 107
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=89.01 E-value=3.7 Score=30.56 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKA 133 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~ 133 (214)
++....+..|+.+|=.|.=+|..|..
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee 28 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEE 28 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44555555555555544444444433
No 108
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.01 E-value=2.4 Score=45.22 Aligned_cols=51 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+|..+|++++..+..|.++.++++.+.-+-++|+...+.++..|...+...
T Consensus 405 ~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 405 QLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333334444444444444444433
No 109
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=88.97 E-value=5 Score=35.13 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTG 164 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~ 164 (214)
.....|+..++--...-......-++.+.|...|+.|+...+.++..|+.|+..+..+-.
T Consensus 126 ~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 126 ARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556665555555555555556667777777788888888888888888887755433
No 110
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.97 E-value=1.9 Score=40.78 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPT 163 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p 163 (214)
.--.+.|......++.++..|+.+.+.+..+.+ .++.|+++++.+++.+..+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 14 THTERDLYEKLKELEKELEFLDIQEEYIKEEQK-------NLKRELIRAKEEVKRIQSVP 66 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCC
Confidence 334444555555554455554444444444444 44455555555565555554
No 111
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.74 E-value=7 Score=29.64 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
|..+...||..+..|...+.+.++|+..|++|.+-|++=+..
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444455555555555444443
No 112
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.72 E-value=2.5 Score=37.32 Aligned_cols=39 Identities=33% Similarity=0.563 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++.++|+.|++|+.+|+.+..++ ..++.|.++|...|..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRLQEL----EQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 34444444444444444444433 1456677777776654
No 113
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=88.65 E-value=0.32 Score=49.55 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=41.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCC--CCCCCCChhhHHHHHHHHHHHHHH
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCILEP--GRPARTDKPAILDDAIRVLNQLRT 112 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslLPP--~~~~K~DKasIL~dAI~yIk~Lr~ 112 (214)
|.+-.-+-|-||.|=|+-|.+|..+||- +..+..|||||+-=||-|++ ||+
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk 99 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRK 99 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHH
Confidence 3334456788999999999999999962 33467999999999999998 554
No 114
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.64 E-value=3.8 Score=31.22 Aligned_cols=62 Identities=34% Similarity=0.466 Sum_probs=31.5
Q ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVL---NQLRTESQELKETNEKLQEEIKSLKA---EKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 97 asIL~dAI~yI---k~Lr~~vq~L~~~n~~L~~ei~eL~~---eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
...+.+.++.- ++|+.+++.|+.+...+..+|..++. +..+|..+...++.++..++.+++.
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 34445566666666666666555554 2344555555555555555444443
No 115
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.62 E-value=6.6 Score=33.64 Aligned_cols=76 Identities=29% Similarity=0.411 Sum_probs=41.4
Q ss_pred HhhhcCCCCCCCCChhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 028060 82 LSCILEPGRPARTDKPA-----------ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA------EKNELREEKLI 144 (214)
Q Consensus 82 LrslLPP~~~~K~DKas-----------IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~------eknELr~Ek~~ 144 (214)
|.+||.-|. -.++|.+ ....--.-+..|+.+++.++.....|+.++..++. +..++-.+...
T Consensus 36 lq~LvDDgl-V~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~ 114 (188)
T PF03962_consen 36 LQSLVDDGL-VHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEE 114 (188)
T ss_pred HHHHhcccc-chhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 444554444 3566654 22333444556666666666666666666655543 22334455556
Q ss_pred HHHHHHHHHHHHHH
Q 028060 145 LKADKEKLEQQLKV 158 (214)
Q Consensus 145 Lk~e~e~L~~qlk~ 158 (214)
|+.+++.|+.+|..
T Consensus 115 l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 115 LKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666664
No 116
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.61 E-value=4.3 Score=37.34 Aligned_cols=32 Identities=34% Similarity=0.450 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
-+..|+.+...|.++...|+.+..+|.+|+.+
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 117
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=88.58 E-value=0.35 Score=43.35 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=44.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRT 112 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~-~~~K~DKasIL~dAI~yIk~Lr~ 112 (214)
++..=|.+||.|=-.||+.|..||.+||.. ...|..|...|.-|-.||..|..
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 567778999999999999999999999732 34689999999888888887743
No 118
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.49 E-value=4 Score=35.22 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 028060 146 KADKEKLEQQLKVM 159 (214)
Q Consensus 146 k~e~e~L~~qlk~~ 159 (214)
+.+++..+.+++..
T Consensus 172 ~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 172 KEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444433
No 119
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=88.48 E-value=4.7 Score=36.81 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK-------ADKEKLEQQLKVM 159 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk-------~e~e~L~~qlk~~ 159 (214)
..+..-|.+++..+..+......|..+|+.-+.|+...+.+...|+ .|-|+|+.+|+.+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3444455566666666667777788888888888887777777776 6888888888774
No 120
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.38 E-value=7.2 Score=36.48 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhh--------cCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 71 RRERLNDRFLDLSCI--------LEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 71 RRdkLN~~F~~Lrsl--------LPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
|...++....+|--. ++|.. .+.+=+.+|.++-+-.+.|+.++..|+.....++.+++-|+...+.
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~-~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEK-ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 446666666555511 22221 2334455889999999999999888887766666666666654443
No 121
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=88.22 E-value=11 Score=34.12 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
.+++.++..|+.+|+.|+.++.+|+.|+.-|++
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777766655
No 122
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.04 E-value=4.3 Score=35.87 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei 128 (214)
+.+..+.+|+++.++|++++..|+.+.
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544
No 123
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.99 E-value=8.2 Score=27.87 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
|..=|+--..|+.++.+.+..|-.+...+++-.....+|..+...|+.+++.++
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455556667777777777777776666666666666666666666666554
No 124
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.77 E-value=3.2 Score=39.48 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCCCCCCCC
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL---EQQLKVMAMPTGGYMPTHP 171 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L---~~qlk~~~~~p~g~~p~~p 171 (214)
++.++=..+++|++-+..++++|..|+-+.+++.+|.+|..+|.+.|..|.... ++.|..-... -|.++|.
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQa--tf~eq~~ 194 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQA--TFVEQHS 194 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchh
Confidence 555666678889999999999999999999999999999999999997766553 3444332222 1666653
No 125
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.70 E-value=3.7 Score=41.38 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 115 QELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 115 q~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+.|+.+...++.++.+|..+++.|+.|+......+..|+.+|..+
T Consensus 18 ~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 18 QQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555554443
No 126
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.61 E-value=3.1 Score=29.47 Aligned_cols=32 Identities=38% Similarity=0.442 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
+.+++.+++.|+.+++.++.+.++|+.++..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666666666666655
No 127
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.35 E-value=9.1 Score=38.37 Aligned_cols=92 Identities=26% Similarity=0.436 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCChhhH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 69 KLRRERLNDRFLDLSCILEPGRPARTDKPAI-LDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslLPP~~~~K~DKasI-L~dAI~yIk~Lr~~vq~L~~---~n~~L~~ei~eL~~eknELr~Ek~~ 144 (214)
-.|=+++.+|+..|+.+- + |-.. +.+.++|..+++.+.+.|.. ..++|+.++..+..+..+.-...+.
T Consensus 296 p~~L~~ve~Rl~~L~~l~---R-----KY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~ 367 (557)
T COG0497 296 PNRLEEVEERLFALKSLA---R-----KYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367 (557)
T ss_pred HHHHHHHHHHHHHHHHHH---H-----HhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777776 2 3333 78999999999999999875 4678888888888888777666665
Q ss_pred HHHHH-----HHHHHHHHHhcCCCCCCCC
Q 028060 145 LKADK-----EKLEQQLKVMAMPTGGYMP 168 (214)
Q Consensus 145 Lk~e~-----e~L~~qlk~~~~~p~g~~p 168 (214)
.+... ..+.++|+.++...+-|.-
T Consensus 368 ~R~~~A~~L~~~v~~eL~~L~Me~a~F~v 396 (557)
T COG0497 368 IRKKAAKELEKEVTAELKALAMEKARFTV 396 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 54332 2356777777766655554
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.31 E-value=4.2 Score=40.79 Aligned_cols=59 Identities=34% Similarity=0.463 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
....-.-+.+|+.+++.|..+.+.+..+++.|+.+..++.+|....+.+.++|+++++-
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l 381 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL 381 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788899999999999999999999999999999999999999999999998875
No 129
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=87.21 E-value=3.4 Score=33.47 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKA 147 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~ 147 (214)
.+++.+.|+++|++|....+.|+.||..||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788888888888889999988874
No 130
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.17 E-value=6 Score=34.31 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 028060 146 KADKEKLEQQLKV 158 (214)
Q Consensus 146 k~e~e~L~~qlk~ 158 (214)
+.....++.++..
T Consensus 132 ~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 132 KQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 131
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=87.11 E-value=5.2 Score=39.81 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 71 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 71 RRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
=+..||+-|..|..+.-- -..-.-|.+||++|=..+.++...-..|+........+|...-.++|.|-.+...|..+|-
T Consensus 109 l~~~L~~ff~s~q~la~~-P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~ 187 (552)
T COG1256 109 LSTLLNDFFNSLQELASN-PSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIR 187 (552)
T ss_pred HHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888887721 1123677889999988888888888888877777777777777788877776666665555
Q ss_pred HH
Q 028060 151 KL 152 (214)
Q Consensus 151 ~L 152 (214)
+.
T Consensus 188 ~~ 189 (552)
T COG1256 188 KV 189 (552)
T ss_pred Hh
Confidence 43
No 132
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.07 E-value=6.7 Score=35.30 Aligned_cols=46 Identities=35% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+..|..+++.+++...+|..++.+|..++.+|.++...|+.++.++
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333333
No 133
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=87.01 E-value=0.84 Score=45.56 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELK---ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~---~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
..||.+--++|+--+...+.=+ +....|+..+++|.+|...||.|+..||.+++-|..+=
T Consensus 277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 3455554455554333322221 22345555555555555556666666665555555533
No 134
>PRK09039 hypothetical protein; Validated
Probab=86.95 E-value=5.2 Score=37.25 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.+.+|..|..+.+.|+.++..|..++.+...+....+.+++.|++.|..
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555666666666666666666666666666666666666654
No 135
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=86.84 E-value=11 Score=31.85 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
.-+.+++.+++.|+.+...|.++++.+-.++.+.+.+...+
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888888888888888888888777544
No 136
>PF14282 FlxA: FlxA-like protein
Probab=86.76 E-value=4.5 Score=31.60 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEE----IKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~e----i~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
-..|..|+.++..|.++...|... .++-......|..+...|.++|..|+.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888777777652 1333444445566666666666666555443
No 137
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=86.62 E-value=8.2 Score=34.53 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 028060 62 GSKACREKLRRERLNDRFLD 81 (214)
Q Consensus 62 ~sH~~~ERkRRdkLN~~F~~ 81 (214)
.......++||..|-+.+..
T Consensus 141 ka~~~~~~~rR~~i~e~I~~ 160 (254)
T PF15458_consen 141 KAEREQKRRRREEIEEAIND 160 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566677888888888877
No 138
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.58 E-value=5 Score=35.69 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQ 125 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~ 125 (214)
.+-.-+..++..++.|..+...|+
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~ 236 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLR 236 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccc
Confidence 333334444444444443333333
No 139
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.48 E-value=16 Score=31.24 Aligned_cols=68 Identities=22% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCCchhHHHHH-----HHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKL-----RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRV---LNQLRTESQELKETNEKLQEEIKSL 131 (214)
Q Consensus 60 ~~~sH~~~ERk-----RRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~y---Ik~Lr~~vq~L~~~n~~L~~ei~eL 131 (214)
|-+|=.|.||- =|+.+...|.+...+.. ...+-.+.+++.. ..+|+.++..|+.++..|..++.+|
T Consensus 73 RQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~------s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 73 RQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYE------SSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678873 36666666776666552 2222233333322 2344444444544444444444444
Q ss_pred HH
Q 028060 132 KA 133 (214)
Q Consensus 132 ~~ 133 (214)
+.
T Consensus 147 ~~ 148 (189)
T PF10211_consen 147 KN 148 (189)
T ss_pred HH
Confidence 33
No 140
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.47 E-value=3 Score=32.69 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
.+|+.+++.++.+++.|+.+.+.|+.+++.|+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555554444444444443
No 141
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.39 E-value=7 Score=32.44 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLK-------AEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~-------~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+..+.+++.++.....+.+++.++. .+..+++.+...++.+.+++++.++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444 4444444555555555555544444
No 142
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.25 E-value=2.4 Score=40.15 Aligned_cols=43 Identities=30% Similarity=0.302 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
..++..|+.+++.|+.++..|..+.+.++.++..+++|...|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778889999999999999999999998888877766664
No 143
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=86.23 E-value=4.8 Score=28.96 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=33.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
.+|-+.|.++-.+|.+....+.+++-+...+.. .+++.+.......++++.+|+.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466666666666666666666666555444321 4555555555566666666666654
No 144
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.18 E-value=7.2 Score=31.25 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
+|+..++.|+.++..+...+.+|.++++|++...
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555544433
No 145
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=86.11 E-value=8.4 Score=35.17 Aligned_cols=78 Identities=26% Similarity=0.356 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 73 ERLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 73 dkLN~~F~~LrslL-PP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
..||+-|..|.++- .|. ...-+.++|..|-..+..++.--.+|.........+|+..-.++|.|-++...|..+|..
T Consensus 107 ~~l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 107 TYLNNFFNALQELAKNPD--SEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665 121 235678889988888888888888888777777778877778888887777777766654
Q ss_pred H
Q 028060 152 L 152 (214)
Q Consensus 152 L 152 (214)
.
T Consensus 185 ~ 185 (322)
T TIGR02492 185 V 185 (322)
T ss_pred H
Confidence 3
No 146
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.03 E-value=11 Score=30.50 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 028060 66 CREKLRRERLNDRFLDLSCIL 86 (214)
Q Consensus 66 ~~ERkRRdkLN~~F~~LrslL 86 (214)
.++...|+.+++.+..|++-+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~ 68 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDI 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 346666777777777776655
No 147
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.97 E-value=5.2 Score=38.24 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhc
Q 028060 71 RRERLNDRFLDLSCIL 86 (214)
Q Consensus 71 RRdkLN~~F~~LrslL 86 (214)
.+..|+..+..|...+
T Consensus 307 ~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 307 KLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 148
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.88 E-value=5.5 Score=36.83 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELK 118 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~ 118 (214)
.+..++...|+.++..|+
T Consensus 175 ~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 175 PKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555444
No 149
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=85.87 E-value=0.65 Score=36.18 Aligned_cols=50 Identities=36% Similarity=0.478 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
.+.=.||..|...+..|..++..|+.++.+|..++.+++.+...|+..+.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 34558899999999999888888888888888888888777666665443
No 150
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.81 E-value=8.5 Score=31.94 Aligned_cols=45 Identities=29% Similarity=0.356 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+..+..++....+.+..+.+..+..+++++...++.+.+.+..++
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 167 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQL 167 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666666666633333334444443333
No 151
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.81 E-value=8 Score=30.19 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSL--KAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL--~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
|..|+.++...+.....++.+++.| +.+.++|+-+...++.++..+..+++.++
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555555566666677777777 66777777777777777777777777664
No 152
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.72 E-value=3.6 Score=41.65 Aligned_cols=37 Identities=32% Similarity=0.480 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
--+.|..|+.+++.|+.++++++.++..|+.++.+++
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666555555555555443
No 153
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.71 E-value=5.8 Score=31.76 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
|+..+..|+.+...+...++||+.+..
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444433333
No 154
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.56 E-value=7.9 Score=33.92 Aligned_cols=61 Identities=30% Similarity=0.386 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
++..|...=+-|.+++..|+.....|+++.+.|-++..++..|+..|-++++.|+.+-..+
T Consensus 54 s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 54 SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455555555566666666666666666666666666666666666666666666555443
No 155
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=85.49 E-value=7.1 Score=29.62 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
=..|..++..|+.....|-..++.++.|..-|+.||..|+.=|..|-.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999999999999999999999999998855
No 156
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.47 E-value=7.1 Score=34.92 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
+-+|+.+++.|+.+...|+-+++++.-+++++.++...+..+++++..
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666666666666666666544
No 157
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=85.46 E-value=5.3 Score=37.57 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
+|+-++.-+..|+.+++.|..+|+.|+.+...+..++.++-.+|.
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~ 175 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKE 175 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777778888888888887777777777666666555444
No 158
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.38 E-value=8.7 Score=32.96 Aligned_cols=60 Identities=27% Similarity=0.414 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
.=|.+++..+.+=+.+...|..-|.-|+++.+..+.....|.++..+|..+-+++..+|.
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666677777788888888888888888888888888888777766654
No 159
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.31 E-value=5.4 Score=40.63 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
|..+++++....++|+..|..-+.|+..|+-+....+.+.+.
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 444444444444444444444444444444444333333333
No 160
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=85.13 E-value=9.8 Score=25.96 Aligned_cols=29 Identities=41% Similarity=0.569 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKA 133 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ 133 (214)
.++.+|+.+++.|+.+|..|..++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666666555555544
No 161
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.08 E-value=4.7 Score=41.76 Aligned_cols=47 Identities=28% Similarity=0.437 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 114 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
..+-.+..+.|.++.+.++..+.+++.++.+|..++|+|.++++.+-
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334556678889999999999999999999999999998888763
No 162
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.06 E-value=4.9 Score=39.46 Aligned_cols=36 Identities=36% Similarity=0.460 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+-|+.|-.++.+++.+..+|..+-+.|+.|.++||.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555544
No 163
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.06 E-value=16 Score=33.31 Aligned_cols=89 Identities=21% Similarity=0.156 Sum_probs=43.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 62 GSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 62 ~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
+.|...|--|.+-=|-...+--..| .+.+.-+|=-.-+.+--+-+.+++++...|.++++.|+.+..++..++.+|+-|
T Consensus 100 vEhiD~elvrkEl~nAlvRAGLktL-~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 100 VEHIDVELVRKELKNALVRAGLKTL-QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666555544444443322222 111122343333333334455555666666666666666666666666666555
Q ss_pred HHHHHHHHHH
Q 028060 142 KLILKADKEK 151 (214)
Q Consensus 142 k~~Lk~e~e~ 151 (214)
++.|.....+
T Consensus 179 ~s~LeE~~~~ 188 (290)
T COG4026 179 NSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHh
Confidence 5555443333
No 164
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=84.97 E-value=4.7 Score=32.29 Aligned_cols=41 Identities=34% Similarity=0.448 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.+|-+|+...+.|-..++.++.|.=.||.|++.|-+=||.|
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34444555555555555555555555666666665555554
No 165
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.72 E-value=16 Score=35.57 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 028060 69 KLRRERLNDRFLDLSCI 85 (214)
Q Consensus 69 RkRRdkLN~~F~~Lrsl 85 (214)
|.||..|-..+..+.-.
T Consensus 111 r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 111 REQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67888888888877663
No 166
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.69 E-value=12 Score=31.07 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhc
Q 028060 73 ERLNDRFLDLSCIL 86 (214)
Q Consensus 73 dkLN~~F~~LrslL 86 (214)
+-|.+++..|-+-|
T Consensus 20 dsle~~v~~LEreL 33 (140)
T PF10473_consen 20 DSLEDHVESLEREL 33 (140)
T ss_pred hhHHHHHHHHHHHH
Confidence 44556666666655
No 167
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.68 E-value=5.1 Score=36.44 Aligned_cols=83 Identities=25% Similarity=0.289 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 73 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQ-LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 73 dkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~-Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
+.+++.+...+.-+.- . -...|-.||+.++.-+.. .+..+-+.-.+|..++.++..-+.++++|.++...|++|++.
T Consensus 141 del~e~~~~el~~l~~-~-~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASLSR-K-IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555521 1 134566788876655444 566666666788888888888888999999999999999998
Q ss_pred HHHHHH
Q 028060 152 LEQQLK 157 (214)
Q Consensus 152 L~~qlk 157 (214)
|+.+..
T Consensus 219 L~~~~~ 224 (258)
T PF15397_consen 219 LQAQAQ 224 (258)
T ss_pred HHHhhc
Confidence 888766
No 168
>PF14282 FlxA: FlxA-like protein
Probab=84.66 E-value=3.8 Score=31.99 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKE----TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~----~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
.+.+..--+-|..|+.++..|.. ..+.-+..++.|..++..|......|+.++..-..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666677778888888776 225556777777777777777777776666555443
No 169
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=84.52 E-value=7.7 Score=31.14 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETN-EKLQEEIKSLKAEKN--------ELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n-~~L~~ei~eL~~ekn--------ELr~Ek~~Lk~e~e~L~~qlk 157 (214)
...|-+|+.+|-.+++.-..+. +..+.+++.+....+ +|+.+...|+.++.+|+.+++
T Consensus 41 ~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 41 AEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888777544332 234555555554443 667777777777777777664
No 170
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.51 E-value=15 Score=31.18 Aligned_cols=48 Identities=29% Similarity=0.433 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
|++|..++..+...++.|+.|+..|..+.|-+.+....|+.|...|-+
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666777777777777777777777777666643
No 171
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=84.47 E-value=14 Score=35.87 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 134 EKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 134 eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
||+-||.|+..|..|.|..+.++.
T Consensus 350 EKaaLrkerd~L~keLeekkrele 373 (442)
T PF06637_consen 350 EKAALRKERDSLAKELEEKKRELE 373 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666555544443
No 172
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=84.39 E-value=9.1 Score=33.38 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 96 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 96 KasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
|+-.|.-|. ++.|-.-...+..+|..|+.++..|..+...|+..+..|..++..|.++
T Consensus 142 k~~ale~~A--~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 142 KAQALELAA--KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 3444555556666777777777777777777777777776666666554
No 173
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=84.30 E-value=4.3 Score=37.97 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPT 163 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p 163 (214)
.|++.+.+++.++++|++ .+.+|..+...++.++++++.+++.+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (389)
T PRK03992 5 ALEERNSELEEQIRQLEL-------KLRDLEAENEKLERELERLKSELEKLKSPP 52 (389)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 344444444444444444 444444444455555566666666555443
No 174
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=84.29 E-value=4.4 Score=36.70 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
+-+..+.+|+++.++|++++.+|..+. .....+++.||.+|+.-.
T Consensus 63 ~~~~~~~~l~~EN~~Lr~e~~~l~~~~---~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 63 ENLKDVNNLEYENYKLRQELLKKNQQL---EILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 334445567788888988887774443 334455777777776543
No 175
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=84.27 E-value=8.7 Score=36.13 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
.-+.+|..+.+.|+.+...+..+++++..+|.++..+.
T Consensus 144 ~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 144 AENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888888888888888876665
No 176
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=84.27 E-value=7.1 Score=31.40 Aligned_cols=52 Identities=33% Similarity=0.417 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++.++..++.+..+|..|-+..-.+..++.++|++...+..+...|+.++..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555443
No 177
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.26 E-value=12 Score=30.85 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSL 131 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL 131 (214)
.-+..|+.++..|+..+..+..+|..|
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL 40 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSL 40 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333
No 178
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=84.20 E-value=1.2 Score=37.97 Aligned_cols=46 Identities=35% Similarity=0.478 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
|.+++.+..+--+.|.-|++|+ .||..|+.+.++||-|+-+|.+++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777777777 556666666666666666666666
No 179
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=84.16 E-value=15 Score=30.07 Aligned_cols=64 Identities=19% Similarity=0.101 Sum_probs=41.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+...-...+++....|+.++.........|+++++........-......|+..+..++.+++.
T Consensus 17 ~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 17 EDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567778888888888887777777777777666555554444445555555555555544
No 180
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=84.12 E-value=1.1 Score=43.63 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 028060 66 CREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRT 112 (214)
Q Consensus 66 ~~ERkRRdkLN~~F~~LrslLPP~~--~~K~DKasIL~dAI~yIk~Lr~ 112 (214)
.+-|.||++=|--|.+|..+||-.. .+..||++|+-=|+.||| |+.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlK-mr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLK-MRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHH-HHH
Confidence 3468999999999999999997422 246999999999999998 443
No 181
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.01 E-value=7.4 Score=28.14 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.|.+|+.++.-++...++|...+-....++..|+.+...|...+..++
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555555555555555555555555555554
No 182
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.98 E-value=5 Score=31.43 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
...+++++.+.++.++++|+++..+|+.|...|+...+-++.....
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4555666666666666666666666666666666655555555544
No 183
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.97 E-value=8.6 Score=41.51 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 69 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 148 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e 148 (214)
...++++++.+..|...+.- . +..|.. |..++.-..+|+.++..|..++..+.+++++++.++..|..+...++++
T Consensus 849 ~~e~e~~~~eI~~Lq~ki~e-l--~~~klk-l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKTNE-L--KSEKLQ-IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH-H--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 44556667777777666621 1 223333 3337777788888888888888888888877777777777777766666
Q ss_pred HHHHHH
Q 028060 149 KEKLEQ 154 (214)
Q Consensus 149 ~e~L~~ 154 (214)
.+++..
T Consensus 925 ~~~~~~ 930 (1311)
T TIGR00606 925 KEELIS 930 (1311)
T ss_pred HHHHHH
Confidence 655543
No 184
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.87 E-value=9.7 Score=35.34 Aligned_cols=53 Identities=25% Similarity=0.497 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
.-++.|+.+++.|.++...+.+++.+|+.+.+++....+.|.++...+.....
T Consensus 48 ~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 48 AKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777777777777777777777777777776666666666655554443
No 185
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=83.83 E-value=5 Score=42.10 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChhhHHH
Q 028060 73 ERLNDRFLDLSCILEPGRPARTDKPAILD 101 (214)
Q Consensus 73 dkLN~~F~~LrslLPP~~~~K~DKasIL~ 101 (214)
|.+|++|.-|.+.+-. .....==.|||+
T Consensus 382 Dd~~~~f~lL~n~vkd-T~aE~yfLSILQ 409 (1102)
T KOG1924|consen 382 DDANEVFELLANTVKD-TGAEPYFLSILQ 409 (1102)
T ss_pred ccHHHHHHHHHHhhhh-ccccchHHHHHH
Confidence 5678888888888733 222333445554
No 186
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.70 E-value=19 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 028060 69 KLRRERLNDRFLDLSCIL 86 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslL 86 (214)
|.||..|..-+..|+.-|
T Consensus 544 r~r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 544 RQRRRQLESELKKLRREL 561 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555544
No 187
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.68 E-value=13 Score=39.87 Aligned_cols=88 Identities=24% Similarity=0.339 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 69 KLRRERLNDRFLDLSCILEPGR----PARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslLPP~~----~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~ 144 (214)
|.+.+.++..+..+..-+--.. ..--+|..-|...|+ .|+..+.+|.++...+.+++.....++...+.+...
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve---k~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE---KLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455566666666655551100 012345555555443 455677778877777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHh
Q 028060 145 LKADKEKLEQQLKVM 159 (214)
Q Consensus 145 Lk~e~e~L~~qlk~~ 159 (214)
|+..++....+|+.+
T Consensus 448 l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 448 LRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666666555553
No 188
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=83.46 E-value=11 Score=31.21 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+|+.+-.+|.+++..|+.|++.+..|.+-+...++++
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445544444444444444433
No 189
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=83.44 E-value=8.5 Score=30.51 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
..|..+++.++.+++.|..+...|+++++.|++.
T Consensus 53 ~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 53 LQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3355555566666666666555555555555554
No 190
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=83.40 E-value=12 Score=36.35 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 74 kLN~~F~~LrslLP-P~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|++-|..|..+-- |. ...-+..+|..|-.....++.-..+|+.....+..+|+..-.++|.|-.+...|..+|...
T Consensus 120 ~l~~ff~a~~~la~~P~--~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~ 197 (507)
T PRK07739 120 VLDQFWNSLQELSKNPE--NLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKV 197 (507)
T ss_pred HHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666551 21 2456788999998888888888888887777778888888888888888888887777553
No 191
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.31 E-value=7 Score=39.47 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.|..+|+.+...++..+..+.+++..|+.++.........|...+.+|+.|+...
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5999999999999999999999999999999999999999999999998887754
No 192
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.27 E-value=11 Score=32.50 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 141 EKLILKADKEKLEQQLK 157 (214)
Q Consensus 141 Ek~~Lk~e~e~L~~qlk 157 (214)
|..+|+++.+.+.+++.
T Consensus 160 ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444455444
No 193
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.18 E-value=17 Score=27.24 Aligned_cols=52 Identities=21% Similarity=0.129 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..|+.++..|+....--..-|.+|...+.|.+-...+++.+...|-..++.+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777766655555678888888888888888888888888888876
No 194
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.01 E-value=7.5 Score=40.77 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|..+=-..|+.|..+++.|++...+|+-+.++|..++.++-.+.+.|+.+.+.|+.||.-.
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444455566666666677777777777777777777777777888888888888888743
No 195
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=82.82 E-value=4.8 Score=29.21 Aligned_cols=33 Identities=39% Similarity=0.461 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
.++..+++.++.+.+.++.+..+|+.|.+.|.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345555555555555555555555555555433
No 196
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.81 E-value=8.8 Score=39.55 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 028060 99 ILDDAIRVLN 108 (214)
Q Consensus 99 IL~dAI~yIk 108 (214)
|+.+|-+++.
T Consensus 498 ii~~A~~~~~ 507 (771)
T TIGR01069 498 IIEQAKTFYG 507 (771)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 197
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=82.79 E-value=2 Score=39.27 Aligned_cols=52 Identities=25% Similarity=0.245 Sum_probs=43.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLR 111 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~-~~~K~DKasIL~dAI~yIk~Lr 111 (214)
++..-+.+||+|=..||..|..||..+|.+ ...|.+|-..|.-|-.||--|-
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~ 226 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALG 226 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhH
Confidence 566778999999999999999999999753 3357888889999988887663
No 198
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.78 E-value=9.3 Score=31.39 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++..+..|..+...+..++..|...+..|..++++++.+|+.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444443
No 199
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=82.72 E-value=12 Score=31.57 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
-.++|+.++++|+.+|..|....+.+......|.+....|+.+...+.
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 345566666666666666665555544444445444444444444443
No 200
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=82.69 E-value=13 Score=26.49 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.++.+|.....+|..++..|..+++-+|.+....|.|-.|--+-|..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888888888888888888888888888887776665543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.64 E-value=8 Score=34.61 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+|..+.+.|+.|+.+|+-++.++..+...++..--.+.++|..+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444555555554
No 202
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.60 E-value=2.1 Score=30.92 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 126 EEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 126 ~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
+|++.|+..+.||.+++..|+.|...|.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555544
No 203
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=82.59 E-value=18 Score=27.07 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
...+...+..+...++.+.+.|..|...|+-|.+.|
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444
No 204
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.56 E-value=9.5 Score=31.17 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+|..+++.|....++..+-++..+.+.++++......+.+++.+++-+..
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45566777777766666667777777777777777777777766655443
No 205
>PRK02224 chromosome segregation protein; Provisional
Probab=82.51 E-value=15 Score=37.37 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+..|...+..++.....+..++..+...++.++.+...++.+++.++.++
T Consensus 351 ~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444443
No 206
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=82.48 E-value=11 Score=36.36 Aligned_cols=77 Identities=21% Similarity=0.137 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 74 kLN~~F~~LrslLP-P~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|++-|..|.++-- |. ...-+..+|+.|-..+..++.-..+|+.....+..+|+..-.++|.+-++...|..+|-..
T Consensus 103 ~l~~ff~a~~~la~~P~--~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~ 180 (483)
T PRK07521 103 RLSDFQAALQTAASSPD--NTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVSG 180 (483)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666551 21 2355778999998888888888888888777788888888888888888777777776553
No 207
>PRK04406 hypothetical protein; Provisional
Probab=82.40 E-value=10 Score=28.11 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
..|.+|+.++.-++...+.|...+-+..+++..|+.+...|...+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777777777777766667777776666666544443
No 208
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=82.07 E-value=5.1 Score=39.87 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 69 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 148 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e 148 (214)
.++.+++++.+..|+...+... ..+.. ...+++. .+.+-.+..+...+++.+++.++..++++|++|...++.+
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~~~---~~~~~--~~~~~~~-~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPKLN---PLREE--KKKVSVK-SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred HHHHHHHHHHHHHHHHhccccc---cchhh--hcccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888888887774311 11000 0011111 0111122333344555555666666666666666666666
Q ss_pred HHHHHH
Q 028060 149 KEKLEQ 154 (214)
Q Consensus 149 ~e~L~~ 154 (214)
++.|+.
T Consensus 123 ~~~l~~ 128 (646)
T PRK05771 123 IERLEP 128 (646)
T ss_pred HHHhhh
Confidence 665553
No 209
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=82.05 E-value=13 Score=35.67 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 75 LNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 75 LN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
|++-|..|.++--. -....-+..+|..|-..+..++.-...|.+....+..+|...-.++|.+-++...|..+|.+.
T Consensus 109 l~~ff~a~~~la~~-P~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~ 185 (456)
T PRK07191 109 LNNFFSALSAATQL-PDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILKN 185 (456)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777776621 112456788999998888888888888887777777777777788888888777777777543
No 210
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.05 E-value=14 Score=31.43 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+--.|+.-+.+++.++..|+.....+...+..|+..+.+|......++.+.+-|
T Consensus 85 LAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 85 LAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666665555555555555555444444444444444444
No 211
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=81.93 E-value=12 Score=28.24 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
|+.-++|+.++...+++.+.|..-+..|+..+--.-+-+..|+.+...++
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444444444444444444444444444444444433
No 212
>PRK14127 cell division protein GpsB; Provisional
Probab=81.83 E-value=9.8 Score=30.38 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 130 SLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 130 eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.|..|+.+|++++..|+.+++.++.++..
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444555555555555555543
No 213
>PHA03011 hypothetical protein; Provisional
Probab=81.82 E-value=17 Score=29.21 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
...-++-+.+|+.+-..|-.+..-+..+++.+..-..+-.+|.--|.+|++||..++.
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 3444566777777777777777777778888877777777788888888888887664
No 214
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.80 E-value=6.1 Score=36.94 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 147 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~ 147 (214)
.++++.|+.++++|+..+..|..+.+.++.++.+++.++..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45677788899999999999998888888888888877766653
No 215
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=81.78 E-value=7.9 Score=39.90 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=3.6
Q ss_pred CCCCccc
Q 028060 188 GLMPMWQ 194 (214)
Q Consensus 188 ~~~~mwq 194 (214)
|+|-||-
T Consensus 668 g~~k~~v 674 (782)
T PRK00409 668 GIMKMKV 674 (782)
T ss_pred CCEEEEE
Confidence 4555653
No 216
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=81.63 E-value=19 Score=33.43 Aligned_cols=49 Identities=24% Similarity=0.343 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
-|++|=+.=|.+-+.| ..|++.|..+..+|++....|..||..|.|-+-
T Consensus 238 AAtRYRqKkRae~E~l-------~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEAL-------LGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667755444444333 334444444444555555555555555555443
No 217
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=81.51 E-value=12 Score=38.08 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|++-|..|.++.- .-..-.-+..+|+.|-..+.+++.-...|......+..+|+..-.++|.|-++...|..+|.+.
T Consensus 108 ~L~~Ff~alq~la~-~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 108 ALQRFFTALQTAAA-NPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555551 0112356788999998888888888888888888888888888888888888888887777653
No 218
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=81.48 E-value=14 Score=37.10 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 75 LNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 75 LN~~F~~LrslL-PP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
|++-|..|..+- .|. .-.-+.++|..|-....+++.-..+|+.....+..+|+..-.++|.|-++.+.|..+|-..
T Consensus 121 l~~ff~al~~ls~~P~--~~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~ 197 (627)
T PRK06665 121 LDDFWDSWQDLSNYPE--GLAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKS 197 (627)
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444454444 111 2356778999998888888888888887777777788777788888888777777777653
No 219
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=81.47 E-value=14 Score=26.20 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKN--------------ELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~ekn--------------ELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+..++.+|..+.+.++.++..+...++ .-+.....++.++++|+..|..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555554444333 23455567778888888777654
No 220
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=81.30 E-value=15 Score=28.70 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+-|..++.+.-.++..|.+|-.++.+|+.+....+. ...++.++++++..++.
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 444444555555555555555666555555554433 34456677777776665
No 221
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=81.17 E-value=7.6 Score=35.80 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 72 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 72 RdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
|++++..=.+.++++.. +..+..=+.+.-.-+++|+.+.++++.+.+.+..+++++...
T Consensus 5 ~~~~~~~~~~~r~l~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 63 (378)
T TIGR01554 5 KEQREEIVAEIRSLLDK----AEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKV 63 (378)
T ss_pred HHHHHHHHHHHHHHHhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777777777777731 111111122222234455555555555555555555444443
No 222
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.12 E-value=11 Score=37.65 Aligned_cols=9 Identities=11% Similarity=0.172 Sum_probs=3.4
Q ss_pred HHHHHHhhh
Q 028060 77 DRFLDLSCI 85 (214)
Q Consensus 77 ~~F~~Lrsl 85 (214)
+-+.+|+..
T Consensus 120 ~e~~elr~~ 128 (546)
T KOG0977|consen 120 EELKELRKK 128 (546)
T ss_pred HHHHHHHHH
Confidence 333333333
No 223
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=81.10 E-value=2.3 Score=32.07 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 136 NELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 136 nELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+|+.+|+..||.++.+|+.+|+.+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555554
No 224
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.05 E-value=15 Score=36.92 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 129 KSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.+..|+++|..+...++.++++|.+.+.
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666654443
No 225
>PRK15396 murein lipoprotein; Provisional
Probab=81.01 E-value=13 Score=28.05 Aligned_cols=47 Identities=11% Similarity=0.324 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
-|.+|..+|+.|..+.++|...+..++.....-.+|-.+-.+.++..
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667776666666666666666666665555555544444433
No 226
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=80.88 E-value=11 Score=29.06 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
-+.=-+++++.++++|.++|++|+.|+....++++
T Consensus 20 y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 20 YLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455666666666666666555544444443
No 227
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.85 E-value=20 Score=26.40 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
..--..|-....++...+..|+..+.++..++.+|......+..+++.|+..++
T Consensus 18 ~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 18 MEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445555555666666666666666666666666666666667777666554
No 228
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.83 E-value=9.2 Score=34.01 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
|-..+..|+.+......+...|..++.++..++..|.++...-..|.++|+.++..
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555566677777777777777777777777777777776655
No 229
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.80 E-value=12 Score=28.51 Aligned_cols=57 Identities=35% Similarity=0.474 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 103 AIRVLNQLRTESQELKETNEKLQE---EIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~---ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
++.-+..|+.+...+.++...+.. +..+|..+..++.++...+..+...++.++..+
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667776666666665554 467777888888888888888888888887764
No 230
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=80.80 E-value=31 Score=28.65 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVL-NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yI-k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|++.|..|-.++..+ . .....+.++++-| .++...+...-.-...++.+++.++.|...|.+.+.+.+..+++|
T Consensus 5 el~~~~~~l~~~~e~~---~-~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~L 80 (162)
T PF05565_consen 5 ELTDEYLELLELLEEG---D-LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRL 80 (162)
T ss_pred HHHHHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999988542 2 3345666777663 346666777777778888889999999999999998888888888
Q ss_pred HHHHHH
Q 028060 153 EQQLKV 158 (214)
Q Consensus 153 ~~qlk~ 158 (214)
.+-|..
T Consensus 81 k~yL~~ 86 (162)
T PF05565_consen 81 KEYLLD 86 (162)
T ss_pred HHHHHH
Confidence 776654
No 231
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.77 E-value=10 Score=37.87 Aligned_cols=49 Identities=27% Similarity=0.299 Sum_probs=31.0
Q ss_pred CChhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAIL----DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 94 ~DKasIL----~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
++++.++ ..-+.-+.+++++..+|..+...++.+++++..|++|+..-.
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4555555 233334445566666777777777888888888888764443
No 232
>PRK04325 hypothetical protein; Provisional
Probab=80.38 E-value=11 Score=27.78 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+.|.+|+.++.-++...+.|...+-+-..++.+|+.+...|...+..++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577777777777777777777777777777777766666655544443
No 233
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.06 E-value=20 Score=31.02 Aligned_cols=41 Identities=29% Similarity=0.419 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
.|..+-.-++.++.++..|+-+++.|......|..|+++|.
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666666666666655555555555554
No 234
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.02 E-value=9.1 Score=38.29 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.|+.++..++..+.-|.+|+..|++|+.+|..+|+.+
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4456666777777778888888888888887777664
No 235
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=79.98 E-value=23 Score=27.84 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=66.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCC---CCCCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCILEP---GRPARTDKPAILD-DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslLPP---~~~~K~DKasIL~-dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
..+-.-.+|..| +.=|..|...++. +.....+..-+.. ..+.+++=++-.++=|-...+.|...+..|..+..
T Consensus 14 ~i~~iDvd~i~~---~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~ 90 (118)
T PF13815_consen 14 LISAIDVDRIVR---ELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQ 90 (118)
T ss_pred HHhccCHHHHHh---ccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777 3445566666633 1111222222222 33577777788888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028060 137 ELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
++..+...|+....++..+++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888875
No 236
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.90 E-value=12 Score=27.03 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 118 KETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 118 ~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.++....++....+...+.+-...+..|..++++|+.++..
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555566666666666666666666644
No 237
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=79.87 E-value=19 Score=30.24 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhc
Q 028060 75 LNDRFLDLSCIL 86 (214)
Q Consensus 75 LN~~F~~LrslL 86 (214)
+...|.+|++-+
T Consensus 56 ~~a~~~eLr~el 67 (177)
T PF07798_consen 56 FKAAIAELRSEL 67 (177)
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
No 238
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=79.72 E-value=9.4 Score=29.52 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=21.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
-.|++.|-+. |=..-+.++.+|+.++..|..++..|+.+++--+.|+.
T Consensus 33 E~KV~~LKks--Ye~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 33 ETKVKALKKS--YEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555432 22334444444444444444444444444444444443
No 239
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=79.62 E-value=15 Score=36.62 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
....+..++..+.+++.++...|+++++++++++..+
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666666666666666666666666666654
No 240
>PF15294 Leu_zip: Leucine zipper
Probab=79.45 E-value=7.6 Score=35.72 Aligned_cols=47 Identities=36% Similarity=0.485 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
--|..++..|+.+|+.|++.+..+.......-+|+..|+.++..|+.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777777777777776666665
No 241
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=79.39 E-value=20 Score=25.69 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQEL 117 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L 117 (214)
|.+|-+.|+++.-+++.+
T Consensus 34 l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 34 LDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 334444444444444444
No 242
>PRK02224 chromosome segregation protein; Provisional
Probab=79.29 E-value=23 Score=36.09 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELK 118 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~ 118 (214)
++.+-+..|+.++..|+
T Consensus 534 ~~~~~~~~l~~e~~~l~ 550 (880)
T PRK02224 534 EKRERAEELRERAAELE 550 (880)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 243
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.28 E-value=11 Score=37.83 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.4
Q ss_pred hhhHHHHH
Q 028060 96 KPAILDDA 103 (214)
Q Consensus 96 KasIL~dA 103 (214)
|+.+|..-
T Consensus 137 ka~~lQ~q 144 (546)
T PF07888_consen 137 KAQLLQNQ 144 (546)
T ss_pred hHHHHHHH
Confidence 44444433
No 244
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.25 E-value=9.6 Score=38.34 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
...|+.++...-+.+....+.|.+++.+...|..-|+.++..||
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665555444444444444444444333333333333333
No 245
>PRK10869 recombination and repair protein; Provisional
Probab=79.17 E-value=25 Score=34.76 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 70 LRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 70 kRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~---~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.|=+.+++|+..|..+- + |-. .-+.+.+.|..+++.+.+.|.. ..+.|+.++..++.+..++..+.+..+
T Consensus 296 ~~l~~ie~Rl~~l~~L~---r--Kyg--~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R 368 (553)
T PRK10869 296 NRLAELEQRLSKQISLA---R--KHH--VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSR 368 (553)
T ss_pred HHHHHHHHHHHHHHHHH---H--HhC--CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888887777 2 222 1478889999999999988764 567888888888888888777766554
Q ss_pred HH-H----HHHHHHHHHhcCCCCCC
Q 028060 147 AD-K----EKLEQQLKVMAMPTGGY 166 (214)
Q Consensus 147 ~e-~----e~L~~qlk~~~~~p~g~ 166 (214)
.+ - +.+..+|+.++.+.+-|
T Consensus 369 ~~aA~~l~~~v~~~L~~L~m~~a~f 393 (553)
T PRK10869 369 QRYAKELAQLITESMHELSMPHGKF 393 (553)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcEE
Confidence 33 2 23456677777665533
No 246
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=79.13 E-value=20 Score=35.07 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 74 kLN~~F~~LrslLP-P~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|++-|..|..+.- |. ...-+..+|..|-..+..++.-..+|......+.++++..-.++|.|-++...|..+|-+.
T Consensus 109 ~l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~ 186 (547)
T PRK08147 109 TMQDFFTSLQTLVSNAE--DPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITRL 186 (547)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666666651 21 2356788999998888888888888888777778888888888888877777777776543
No 247
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.10 E-value=25 Score=35.08 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+..-.+.+..++.++.+++.+.+.++.++..++.++.+++.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555444444444433
No 248
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.89 E-value=24 Score=31.42 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETN-------EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n-------~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
-.|.+...-+..|..+-....++. ..|...|++++.+++..++...++..|..+|..++..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666555666655543333333 3344444444444444444444444444444444433
No 249
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.85 E-value=9 Score=34.08 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
+.+.++.....|+.+++.+..|.+.|-+|.+.|+.+++
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33334445566666666666666666666666666654
No 250
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.81 E-value=13 Score=34.39 Aligned_cols=62 Identities=26% Similarity=0.358 Sum_probs=40.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 93 RTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 93 K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
-++|.+.+- -|.-|+..+..|++.+..|+.++++...+..-++.....|+.+...|+.+|+.
T Consensus 104 DNek~~l~y----qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 104 DNEKSALMY----QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred chHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467776553 24556667777777777777776666666666666666666666666666665
No 251
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=78.77 E-value=6.1 Score=38.99 Aligned_cols=45 Identities=29% Similarity=0.399 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYM 167 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~ 167 (214)
+|+.++++|.+.|..|. ..+++.|+ |+++|..||..+..||.+|-
T Consensus 5 ~~~~~~~~~~~~~~~l~-------~~l~~~~~-------~~~~~~~~~~~~~~p~~~~~ 49 (512)
T TIGR03689 5 ELQATNSSLGARNAKLA-------ELLKAARD-------KLSKLKSQLEQLAQPPSTYG 49 (512)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHHHHHHhcCCCcceE
Confidence 34444555544444444 34444444 34444456666666777653
No 252
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=78.72 E-value=14 Score=34.65 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETN-EK----LQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n-~~----L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
.|.++.|+-.-+|+.+.+++-+.. .. .+.+++++-..+.|||.|..+|+.+++.|+.
T Consensus 256 k~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 256 KVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 377777777778887777765433 22 3688888888999998888888888887765
No 253
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=78.68 E-value=15 Score=34.61 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 77 DRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKS---LKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 77 ~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~e---L~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+-|..|-..++. .. +.==|.| +--+|+..|+.++++|+.+.++|.+++.+ .+..+.++.++..++..+++.++
T Consensus 218 ~Yf~~l~~~f~d-~a-~~~~A~l--~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 218 EYFENLYDAFGD-KA-KFFLAEL--NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHCCC-CE-EEEEEEE--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-Ce-EEEEEEE--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 457777777732 21 1000000 12367888888888888777777765433 34455667777777777777776
Q ss_pred HHHH
Q 028060 154 QQLK 157 (214)
Q Consensus 154 ~qlk 157 (214)
+-++
T Consensus 294 ~~~~ 297 (406)
T PF02388_consen 294 ELIA 297 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6444
No 254
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.58 E-value=12 Score=38.66 Aligned_cols=6 Identities=50% Similarity=0.357 Sum_probs=2.9
Q ss_pred CCCCcc
Q 028060 188 GLMPMW 193 (214)
Q Consensus 188 ~~~~mw 193 (214)
|+|-||
T Consensus 656 g~~k~~ 661 (771)
T TIGR01069 656 GGMRMK 661 (771)
T ss_pred CCEEEE
Confidence 345554
No 255
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=78.43 E-value=20 Score=36.08 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 74 kLN~~F~~LrslLP-P~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|++-|..|..+-- |. ...-+..+|..|-.....++.-..+|+.....+..+|...-.++|.|-++...|..+|.+.
T Consensus 113 ~l~~ff~al~~ls~~P~--~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~~ 190 (613)
T PRK08471 113 DLQDYFNAWNDFASNPK--DSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKEV 190 (613)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555555551 21 2345777888888888888777777777777777777777777777777777777666543
No 256
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.38 E-value=30 Score=27.67 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|..++.++......|..+..-|.+||.
T Consensus 103 le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333334444444443
No 257
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=78.35 E-value=11 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
.+...+..++.|..+++++...++.-+.+
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433333
No 258
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.30 E-value=25 Score=31.22 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
++++..++..++.|+.+...|+..+..|+
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 33333333333333333333333333333
No 259
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.21 E-value=16 Score=38.49 Aligned_cols=49 Identities=33% Similarity=0.414 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAM 161 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~ 161 (214)
+++.+....+....++.+|.+++.|+.+-+..|-.|+..|.+|+|.+.+
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 3344444455556778888888888888888888899999999987643
No 260
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=78.12 E-value=16 Score=32.13 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHhhhcCCCCCCCCChhhHH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 81 DLSCILEPGRPARTDKPAIL-------DDAI----RVLNQLRTESQELKETNEKLQEEIKSLK 132 (214)
Q Consensus 81 ~LrslLPP~~~~K~DKasIL-------~dAI----~yIk~Lr~~vq~L~~~n~~L~~ei~eL~ 132 (214)
.|.++|..+. ...+|..+- ++|| -|.+.|.++.+...+...+|.+.+...+
T Consensus 47 vLQsLvDD~l-V~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K 108 (203)
T KOG3433|consen 47 VLQSLVDDGL-VIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIENRK 108 (203)
T ss_pred HHHHHhccch-HHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 4566665443 234444333 3333 3556666666666655555555544333
No 261
>PRK14127 cell division protein GpsB; Provisional
Probab=77.87 E-value=6.2 Score=31.51 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
+|+.++-...+.|..++..|++++..|+.++.+++.+..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555555555555555555555555544333
No 262
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.77 E-value=12 Score=33.25 Aligned_cols=50 Identities=28% Similarity=0.348 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|..++..+......|.+++..-..|..+|+.+....+...++-...|..+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555666665555555555555555443
No 263
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.76 E-value=27 Score=28.98 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=47.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
...-+|+..=+=+..+..+...++.+.....+.+..++.+...+..+...++.+..+|..+...+..|
T Consensus 74 ~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 74 KTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 34556776667777777777777777777777777777777777777777777777777666555433
No 264
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=77.73 E-value=10 Score=25.50 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 134 EKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 134 eknELr~Ek~~Lk~e~e~L~~ 154 (214)
++.+|+.++..||-+|.++..
T Consensus 28 ~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 28 ELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 334455555555555555543
No 265
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.61 E-value=16 Score=34.48 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 129 KSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+++...++++..+.+.+..++|+..+++..
T Consensus 290 ~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 290 KQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444443
No 266
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.59 E-value=36 Score=34.99 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
..++|+.++.+|+.+....++++..|..+..+||.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777766666666666666666654
No 267
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=77.15 E-value=27 Score=25.81 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
++.|++.++++.+..+.+++++..+..|.+++-+
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~ 54 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLH 54 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333
No 268
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.11 E-value=22 Score=38.46 Aligned_cols=85 Identities=11% Similarity=0.248 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHH------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 028060 71 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVL------NQLRTESQELKETNE-----KLQEEIKSLKAEKNELR 139 (214)
Q Consensus 71 RRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yI------k~Lr~~vq~L~~~n~-----~L~~ei~eL~~eknELr 139 (214)
..+.++..+..|+.-+.. -...---|.+-+.|+ .+++.++..|..++. .++.+..+|..+.+.|.
T Consensus 992 e~~~l~~~i~~l~kel~~----~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~ 1067 (1311)
T TIGR00606 992 HQEKINEDMRLMRQDIDT----QKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIK 1067 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888832 233444567778888 555556666655443 44455566666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028060 140 EEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 140 ~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+++.+..++.+|+.|+..+
T Consensus 1068 ~~~a~l~g~~k~le~qi~~l 1087 (1311)
T TIGR00606 1068 RNHVLALGRQKGYEKEIKHF 1087 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666655554
No 269
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=76.98 E-value=20 Score=32.06 Aligned_cols=25 Identities=44% Similarity=0.477 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 134 EKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 134 eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
|-.-||.|+.+|+.|+|++.++|..
T Consensus 117 EF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 117 EFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444899999999999999988854
No 270
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=76.88 E-value=14 Score=35.25 Aligned_cols=51 Identities=39% Similarity=0.524 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIK----------SLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~----------eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++|+.+++.|+.+...+..+|. +|..+..+|+++...|+.+...++.++..
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444443 34445555555555566666666666655
No 271
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=76.76 E-value=20 Score=27.58 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=4.1
Q ss_pred HHHHHhhhc
Q 028060 78 RFLDLSCIL 86 (214)
Q Consensus 78 ~F~~LrslL 86 (214)
.+.-|-+++
T Consensus 4 kI~rLE~~~ 12 (86)
T PF12711_consen 4 KIKRLEKLL 12 (86)
T ss_pred HHHHHHHHh
Confidence 344444444
No 272
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.63 E-value=42 Score=33.16 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
..+...+-+.+|.+++..++.+...+.+.+..|+..-.+.++....++..+..+...+...+.|
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lp 440 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLP 440 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3677777777888888888888888888888888888888887778877777777777666555
No 273
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.60 E-value=11 Score=35.80 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.+.|..-.++|++++..|..+...|+..++-|
T Consensus 241 ~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL 272 (365)
T KOG2391|consen 241 EEELNIGKQKLVAMKETLEQQLQSLQKNIDIL 272 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33333333444444444444444444444433
No 274
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.56 E-value=14 Score=30.93 Aligned_cols=45 Identities=31% Similarity=0.454 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 147 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~ 147 (214)
.++||+| |+++++.|++....|+..+.+|.....+++.+.+.+.+
T Consensus 92 ~~eAie~---l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 92 ADEAIEF---LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456555 56788888888888888888888888888877766643
No 275
>PRK14011 prefoldin subunit alpha; Provisional
Probab=76.49 E-value=19 Score=29.91 Aligned_cols=52 Identities=25% Similarity=0.427 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.+|++| ++.+++.|++..+.|.+.++++..+.++++.+ |+.....++++.+
T Consensus 86 ~~eA~~~---~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~---L~~k~~~~~~~~~ 137 (144)
T PRK14011 86 VSEVIED---FKKSVEELDKTKKEGNKKIEELNKEITKLRKE---LEKRAQAIEQRQA 137 (144)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 5677776 55677888888888888888888888888776 3333444544433
No 276
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=76.40 E-value=28 Score=25.69 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
+.-+-++++++.++.++++.+.+..|+..+-.+-|++-+.-.
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666554443
No 277
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=76.31 E-value=14 Score=33.84 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=56.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+.....+-.--||+=+.+..++-..+ .|-++--..|+.+.+.|...|+.|-.+-.+|..++.++++
T Consensus 74 KLKNRVAAQtaRDrKKaRm~eme~~i--------------~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 74 KLKNRVAAQTARDRKKARMEEMEYEI--------------KDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444555556777777777776655 1223455668899999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028060 141 EKLILKADKE 150 (214)
Q Consensus 141 Ek~~Lk~e~e 150 (214)
|...|+++.-
T Consensus 140 ~l~~~~~~~~ 149 (292)
T KOG4005|consen 140 ELAELKQQQQ 149 (292)
T ss_pred HHHhhHHHHH
Confidence 9988876554
No 278
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=76.21 E-value=0.84 Score=40.93 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
.||.+=.--|.+|+.-|+-|..+|+.|+.+.+.|++|+..
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~ar 161 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENAR 161 (243)
T ss_dssp ----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566677777777776666666555444444443
No 279
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=76.11 E-value=28 Score=26.38 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 134 EKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 134 eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
...||-.|.+.|..|+-+|++++..+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777777777766654
No 280
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.99 E-value=25 Score=25.05 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 124 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 124 L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|+.++..+...++-++.|+..++.+++++++-++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 281
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.96 E-value=18 Score=37.30 Aligned_cols=10 Identities=10% Similarity=0.401 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 028060 149 KEKLEQQLKV 158 (214)
Q Consensus 149 ~e~L~~qlk~ 158 (214)
.+++-.+++.
T Consensus 586 ~~~~i~~lk~ 595 (782)
T PRK00409 586 ADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 282
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=75.95 E-value=19 Score=27.41 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 028060 108 NQLRTESQELK 118 (214)
Q Consensus 108 k~Lr~~vq~L~ 118 (214)
+.|...+..|+
T Consensus 11 ~rL~~aid~LE 21 (89)
T PF13747_consen 11 TRLEAAIDRLE 21 (89)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 283
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=75.95 E-value=12 Score=35.71 Aligned_cols=51 Identities=33% Similarity=0.438 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIK-----------SLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~-----------eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++|+.+++.|+.+...+..+|. +|+.+..+|+++...|+++...++.++..
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444443 34444444555555555555555555544
No 284
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.81 E-value=37 Score=33.48 Aligned_cols=37 Identities=32% Similarity=0.320 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+++.++..++.|..+..+||...+.||+.+++|....
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4566777788888888888888888888777775444
No 285
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.76 E-value=32 Score=29.32 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.-..+..|+..++.+......|...+..|+..+.+++.+...|++.....+.+.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~ 150 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK 150 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888888888888888888888888888888776665554443
No 286
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=75.60 E-value=31 Score=33.04 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 75 LNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 75 LN~~F~~LrslL-PP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
|++-|..|.++- .|. ...-+..+|..|-.....+..-...|......+..+|+..-.++|.+-++...|..+|.+
T Consensus 114 l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 189 (431)
T PRK06799 114 MDGFFNAFREVAKNPE--QANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIGQ 189 (431)
T ss_pred HHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554 121 235577788888888887777777777776667777777777777777777777666643
No 287
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=75.46 E-value=23 Score=35.90 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 75 LNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 75 LN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
|++-|..|..+.- .-..-.-+..+|+.|-..+.+++.--.+|......+..+|+..-.++|.|-++...|..+|.+.
T Consensus 110 L~~Ff~alq~la~-~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~ 186 (651)
T PRK06945 110 ITSFFTGLQNVAN-NPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKA 186 (651)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666651 1112356777999998888888888888888777788888888888888888888887777654
No 288
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.36 E-value=16 Score=34.17 Aligned_cols=55 Identities=29% Similarity=0.478 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+=-++|.+| +++...+++|+.+++.+.-|+.|+..|....+--.+||.++|.-+
T Consensus 126 ~ere~lV~qL----Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 126 HEREDLVEQL----EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455554 566677777888888888888888888888888888888887654
No 289
>PRK04654 sec-independent translocase; Provisional
Probab=75.34 E-value=30 Score=30.84 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKE 119 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~ 119 (214)
++|+++|......++
T Consensus 34 k~irk~R~~~~~vk~ 48 (214)
T PRK04654 34 LWVRRARMQWDSVKQ 48 (214)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544444
No 290
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=75.33 E-value=25 Score=35.36 Aligned_cols=77 Identities=10% Similarity=0.190 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
.|++-|..|..+-- .-..-.-+..+|..|-..+.+++.--..|......+..+|...-.++|.|-++.+.|..+|..
T Consensus 108 ~l~~ff~alq~la~-~P~~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~ 184 (624)
T PRK12714 108 LWSNFFDSTSALSS-NASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGS 184 (624)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666662 111235677899999888888888888888877778888888888888888888877777754
No 291
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=75.21 E-value=20 Score=33.36 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELK 118 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~ 118 (214)
+||+|=..|-+-.++|+
T Consensus 49 ~A~~fA~~ld~~~~kl~ 65 (301)
T PF06120_consen 49 EAIEFADSLDELKEKLK 65 (301)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 44555444444444444
No 292
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.11 E-value=34 Score=28.73 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 99 ILDDAIRVLNQLRTESQELKE---TNEKL--------QEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~---~n~~L--------~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|+.+...+|++|....++++. +.+.. .++.+.+..|+.+|++|....+.+++.|..|.+.+
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566655554444433 22211 23334455666666666666666666666666554
No 293
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.04 E-value=19 Score=33.65 Aligned_cols=53 Identities=32% Similarity=0.397 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
-|..|..++..-.+++...+++|..|..++-+|+.....+=.|.|.|.+.|..
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33344444444445555666777777777777766666666777777666654
No 294
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=74.89 E-value=22 Score=36.57 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 028060 147 ADKEKLEQQLKV 158 (214)
Q Consensus 147 ~e~e~L~~qlk~ 158 (214)
.++..++.++..
T Consensus 483 ~~l~~l~~~~~~ 494 (1164)
T TIGR02169 483 KELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 333333344433
No 295
>PRK00295 hypothetical protein; Provisional
Probab=74.78 E-value=19 Score=26.08 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.|.+|+.++.-++...+.|...+-...+++..|+.+...|...+..++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478888888888888888888888888888888877777766666655
No 296
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=74.68 E-value=14 Score=34.46 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
++...+..+..+.++|.....+-|.|.|++++-|.++
T Consensus 123 ~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 123 SSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444445555555555444
No 297
>PRK00846 hypothetical protein; Provisional
Probab=74.60 E-value=28 Score=26.22 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
-..|.+|+.++.-.+...+.|...+.....++..|+.....|......++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777777777777777777777777777777766666655554444
No 298
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=74.45 E-value=33 Score=29.65 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
..+..|+.++..++.....|+..+..|+.++.+++..+..|.+.....+.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555666666666655555555444444443
No 299
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.45 E-value=18 Score=37.27 Aligned_cols=84 Identities=29% Similarity=0.391 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 028060 71 RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLK-------AEKNELREEKL 143 (214)
Q Consensus 71 RRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~-------~eknELr~Ek~ 143 (214)
|-..++.++.+|..-|--.+..-...-+=..+-...+.+|+...+.++.+...|+++++++| +..+||.+||.
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33456666666665551100000111112233344555666666666666677777776655 45677888888
Q ss_pred HHHHHHHHHHH
Q 028060 144 ILKADKEKLEQ 154 (214)
Q Consensus 144 ~Lk~e~e~L~~ 154 (214)
.|+.++.-|.+
T Consensus 108 slQKqvs~Lk~ 118 (717)
T PF09730_consen 108 SLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHH
Confidence 88888877754
No 300
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=74.43 E-value=32 Score=27.48 Aligned_cols=78 Identities=23% Similarity=0.238 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+|+..+.+|...|-- . =.+...-|-.=+.-+++++..++.++...+.|+...+.|+.++-+=-++...+....++|+
T Consensus 37 kL~~~i~eld~~i~~-~--v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 37 KLNFDIQELDKRIRS-Q--VTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred HHHHHHHHHHHHHHH-H--HHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455566665555521 1 1222333333334455566666666666666666666666666665555555555555555
Q ss_pred H
Q 028060 154 Q 154 (214)
Q Consensus 154 ~ 154 (214)
+
T Consensus 114 ~ 114 (132)
T PF10392_consen 114 Q 114 (132)
T ss_pred H
Confidence 4
No 301
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.35 E-value=25 Score=30.14 Aligned_cols=17 Identities=12% Similarity=0.516 Sum_probs=10.9
Q ss_pred ccccccc--cCCCCCCCcC
Q 028060 9 FINYSFN--DQNASLDFSW 25 (214)
Q Consensus 9 ~~d~~~~--~~~~~~~~~w 25 (214)
|.|-||| |-|.+++|+|
T Consensus 39 LvDDglV~~EKiGssn~YW 57 (188)
T PF03962_consen 39 LVDDGLVHVEKIGSSNYYW 57 (188)
T ss_pred HhccccchhhhccCeeEEE
Confidence 5566666 4566667777
No 302
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=74.31 E-value=19 Score=28.44 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
.+.+.+-..+..+..+.+. +.++...|..++..|++|+.+|+..
T Consensus 43 ~~g~~~~~~~~~l~~qi~~-------~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 43 WFGKNGAADVLQLQRQIAA-------QQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334444444444444444 4444444444444455555554443
No 303
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=74.17 E-value=21 Score=26.69 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
..+..++..+..+...|++|+..|+.|+.+|
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555555544
No 304
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=74.13 E-value=3.3 Score=38.65 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKA 133 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ 133 (214)
+|||=|+.+|.-|+.+|+.|-||++.||.
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 89999999999999999999988887764
No 305
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=73.78 E-value=40 Score=26.12 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 111 RTESQELKETN-EKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 111 r~~vq~L~~~n-~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
...|..|+... ...+.++++|..+++.|.+|+..|+.+++.-..
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666544 345667777777777777777777666655443
No 306
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.74 E-value=16 Score=33.10 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
.|+.++.+++++..+|+.|++.+....+..+.+-..-++++|+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 5677777777777777777777777777776222333344443
No 307
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.70 E-value=18 Score=35.51 Aligned_cols=52 Identities=31% Similarity=0.305 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+..|+.++|+|+.+|..|++.+..|+....+|..+.+++-.++|-|..|+..
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~ 350 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3445667889999999999999999999999988888888777777655543
No 308
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=73.63 E-value=29 Score=31.97 Aligned_cols=43 Identities=37% Similarity=0.439 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
|..+-..+...+.+++.++.....|+.+.++...++.+|.++.
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 309
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=73.53 E-value=8.2 Score=33.05 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 028060 67 REKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTE 113 (214)
Q Consensus 67 ~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~ 113 (214)
.|+.|-.++|+.|.-|++++|-.-..++.+---|..+..||..|.+-
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~ 75 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDEL 75 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHH
Confidence 38888899999999999999543223344433466666777666543
No 310
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=73.42 E-value=39 Score=26.07 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 129 KSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.+...++..|..+...|++++.+++..++.
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555544
No 311
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=73.42 E-value=13 Score=36.28 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Q 028060 63 SKACREKLRRERLNDRFLDLSCIL 86 (214)
Q Consensus 63 sH~~~ERkRRdkLN~~F~~LrslL 86 (214)
+|...+.+....+.....-|+..+
T Consensus 207 ~~~~~~l~~~~e~~~~l~l~~~~~ 230 (511)
T PF09787_consen 207 RHYIEYLRESGELQEQLELLKAEG 230 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555666666666666666555
No 312
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=73.28 E-value=10 Score=34.73 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 136 NELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 136 nELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
.+++.|...++.|+++++.+++....+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 16 RSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333333334444444445555544333
No 313
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=73.21 E-value=25 Score=30.87 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQE---------EIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~---------ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+++.+++.|+.+.+.|++ ++-++..++++.+.|...++.++..|.+++.
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555544444433 2334444555555555555555555544443
No 314
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=73.11 E-value=38 Score=25.66 Aligned_cols=51 Identities=29% Similarity=0.335 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.|-.+...|+.....-++||..|+.-...||.+......-..+|+.+....
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~ 52 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNL 52 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888889999999999999998888888888888877654
No 315
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.06 E-value=41 Score=26.01 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 142 KLILKADKEKLEQQLKV 158 (214)
Q Consensus 142 k~~Lk~e~e~L~~qlk~ 158 (214)
...|+.++..++.+|+.
T Consensus 90 ~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 90 EERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 316
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=72.81 E-value=27 Score=35.52 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.+|++.++...++..+-+ ....+|..|...++.++.+|+.++..
T Consensus 26 v~~l~~~v~~kd~elr~rq-------t~~~~l~~~~~~~~~~i~~ltnel~k 70 (732)
T KOG0614|consen 26 VPQLEEAVQRKDAELRQRQ-------TILEELIKEISKLEGEIAKLTNELDK 70 (732)
T ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 3444444444444444333 44444555555555555555555544
No 317
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.75 E-value=31 Score=32.07 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 028060 147 ADKEKLEQQLKV 158 (214)
Q Consensus 147 ~e~e~L~~qlk~ 158 (214)
+....|-+.+..
T Consensus 83 ~kl~eL~~~~~~ 94 (294)
T COG1340 83 AKLQELRKEYRE 94 (294)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 318
>PHA03247 large tegument protein UL36; Provisional
Probab=72.62 E-value=29 Score=40.88 Aligned_cols=92 Identities=21% Similarity=0.328 Sum_probs=67.1
Q ss_pred HHHHHHhhhcCC------------CCCCCCChhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 028060 77 DRFLDLSCILEP------------GRPARTDKPAILDDAIRVLNQLRTESQELK----------ETNEKLQEEIKSLKAE 134 (214)
Q Consensus 77 ~~F~~LrslLPP------------~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~----------~~n~~L~~ei~eL~~e 134 (214)
++|.+|.+.|.. +...-.|-.+++..+|+--.+|-.++.-|. +..+.|....++++.-
T Consensus 917 ~RF~~LsAAv~qa~~~~~~~~p~~~~~~~~~~~~l~~~~~r~aed~vrqak~l~~~~~~~~Ls~e~r~rl~~r~~evEt~ 996 (3151)
T PHA03247 917 ERFEALDAALRQELESEAAFVPAPGAAPYADAGGLSPETRRLAEDALRQAKAMAAAKLTDELSPEARERLRARARAIEAM 996 (3151)
T ss_pred HHHHHHHHHHHHHhhhhhhcCcccccccccccccchHHHHHHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHHHH
Confidence 468888877732 111123344556666666666666655554 3456788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 028060 135 KNELREEKLILKADKEKLEQQLKVMAMPTGGYMP 168 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~p 168 (214)
.+++|.....+|.-++++.+.|+.+-.|-.||.-
T Consensus 997 ~~~aR~r~~~i~~~r~~~y~~L~~lLrPl~~FvG 1030 (3151)
T PHA03247 997 LEEARERAEAARAARERFFQKLQGVLRPLPDFGG 1030 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999888777863
No 319
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=72.60 E-value=28 Score=35.22 Aligned_cols=77 Identities=10% Similarity=0.124 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
.|++-|..|..+-- .-.....+.++|..|=..+.+++.--+.|......+..+|+..-.++|.|-++...|..+|.+
T Consensus 111 ~L~~Ff~alq~la~-~P~~~aaRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~~ 187 (626)
T PRK08871 111 NLNEWFDAVKTLAD-SPNDLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMMR 187 (626)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666651 011235677899999888888888888888777777777777777888887777777777643
No 320
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=72.42 E-value=19 Score=27.47 Aligned_cols=38 Identities=37% Similarity=0.587 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+.+|++|++ .++..|++..+.+..++.+++.+.+.+++
T Consensus 75 ~~eA~~~l~---~r~~~l~~~~~~l~~~~~~~~~~~~~~~~ 112 (120)
T PF02996_consen 75 LEEAIEFLK---KRIKELEEQLEKLEKELAELQAQIEQLEQ 112 (120)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777754 44445555555555555444444444443
No 321
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=72.35 E-value=22 Score=30.64 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 129 KSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
.+-+..+.++..+...|+.++...++
T Consensus 149 ~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 149 EEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444444444443
No 322
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=72.33 E-value=6.8 Score=28.16 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 135 KNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.||.+....|++||+|+++++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666665543
No 323
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=72.26 E-value=27 Score=30.42 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.+|-+.+..+...|..+...|-.+...|...+..|.+.+..|+.|..-++
T Consensus 155 ~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e 204 (206)
T PF14988_consen 155 DEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLE 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666666666666666666666666666666666666666555443
No 324
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=72.14 E-value=24 Score=30.91 Aligned_cols=51 Identities=29% Similarity=0.378 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEK--NELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~ek--nELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.|+++++.|+.+......||++|..-+ .|++++.+.|+.+.......|+.+
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443322 244555555555554444444443
No 325
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=72.14 E-value=9.5 Score=34.95 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
.|+.++++|++++..++.+.+.++.++.+++++...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544444333
No 326
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.95 E-value=50 Score=28.86 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKN 136 (214)
Q Consensus 125 ~~ei~eL~~ekn 136 (214)
..+|+.|...+.
T Consensus 175 e~~i~~L~~~lk 186 (237)
T PF00261_consen 175 EEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344433333
No 327
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=71.86 E-value=17 Score=35.46 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 028060 68 EKLRRERLNDRFLDLSCILE 87 (214)
Q Consensus 68 ERkRRdkLN~~F~~LrslLP 87 (214)
|-.+=..++..|..+++--+
T Consensus 112 ~s~~~~~~~~~f~i~~~qt~ 131 (447)
T KOG2751|consen 112 LSATINVLTRLFDILSSQTQ 131 (447)
T ss_pred HHHHHHHHHHHHHHhhccCC
Confidence 33333445666666665553
No 328
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.81 E-value=28 Score=32.14 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 119 ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 119 ~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.+...++.++..|+.+.++...++..|+.+++..+..|
T Consensus 242 ~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 242 AELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334444444444444444444444444444444333
No 329
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.78 E-value=32 Score=35.39 Aligned_cols=49 Identities=29% Similarity=0.422 Sum_probs=23.1
Q ss_pred hHHHHHHHHH-----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVL-----NQLRT-------ESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 98 sIL~dAI~yI-----k~Lr~-------~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.+|.+|++.+ ..+.. ++..|+.+.+.-..++.+|+.++..+++....|.
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La 599 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA 599 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777776543 32222 2333344444444444555555555544444443
No 330
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.71 E-value=27 Score=32.56 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 028060 147 ADKEKLEQQLKVMAMPTGG 165 (214)
Q Consensus 147 ~e~e~L~~qlk~~~~~p~g 165 (214)
.|.-||+.-|+.|-.+..|
T Consensus 156 iQN~KLEsLLqsMElAq~g 174 (305)
T PF15290_consen 156 IQNKKLESLLQSMELAQSG 174 (305)
T ss_pred hhHhHHHHHHHHHHHHHhc
Confidence 3445677778877433333
No 331
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=71.64 E-value=10 Score=28.69 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
.|+++++.|+.++..+++++..++++++-
T Consensus 74 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 74 ELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444555555555444443
No 332
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=71.63 E-value=44 Score=25.75 Aligned_cols=41 Identities=29% Similarity=0.231 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
++-.+-++--+.=++.+++++|+.|++|.+.|+.|+.--..
T Consensus 11 ~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~ 51 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAET 51 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667778888888888888888777777765433
No 333
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=71.57 E-value=29 Score=33.05 Aligned_cols=34 Identities=38% Similarity=0.540 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 126 EEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 126 ~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+..+.+...+.+|.++...|+.++..|+.++...
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555566666666666666666666544
No 334
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=71.50 E-value=30 Score=32.64 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 028060 75 LNDRFLDLSC 84 (214)
Q Consensus 75 LN~~F~~Lrs 84 (214)
|.+.+.+|..
T Consensus 10 i~~li~~la~ 19 (328)
T PF15369_consen 10 IANLIKELAR 19 (328)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 335
>PRK10698 phage shock protein PspA; Provisional
Probab=71.48 E-value=42 Score=29.41 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
..-+..|+.+.+........|+..+..|+..+.+++..+..|.+....-+.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666667777777777777777777777666554444433
No 336
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=71.47 E-value=22 Score=28.36 Aligned_cols=45 Identities=33% Similarity=0.524 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 147 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~ 147 (214)
+.+|+.+++ .++..|....+.|..++..+..+.+++++....+.+
T Consensus 92 ~~eA~~~l~---~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILD---KRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776644 455556666666666666666666665555444433
No 337
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.45 E-value=24 Score=39.21 Aligned_cols=88 Identities=14% Similarity=0.246 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 69 KLRRERLNDRFLDLSCILEPGRP--ARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslLPP~~~--~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
..++..++.+..+|..++.- +. +=.|-+.+|++.-+...+|+.++.++++....+.++.++...+.++...+...++
T Consensus 948 ~~~~~~~~~~~~~l~~~~~~-~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slk 1026 (1486)
T PRK04863 948 QQTQRDAKQQAFALTEVVQR-RAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLK 1026 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999998832 11 1256667889888999999999999998888888888888888888777766666
Q ss_pred HHHHHHHHHHH
Q 028060 147 ADKEKLEQQLK 157 (214)
Q Consensus 147 ~e~e~L~~qlk 157 (214)
..+..++++++
T Consensus 1027 sslq~~~e~L~ 1037 (1486)
T PRK04863 1027 SSYDAKRQMLQ 1037 (1486)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 338
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=71.39 E-value=55 Score=26.78 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=41.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIK-----SLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~-----eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..|..++..--.-|.+|..+.++|+-+...+..+.+ .+..-...+..|++.+...+..|.+|++.+
T Consensus 16 ~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 16 KWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677777777777765555555543 333334456667777777777777777765
No 339
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.36 E-value=31 Score=25.29 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
..|.+|+.++.=++...+.|.+.+-+...++..|+.+...|..++..++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5777888888888888888877777777777777777777766655554
No 340
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.31 E-value=23 Score=27.13 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+-|..+.-+.+..|..+++.++.....+..+++++..+.++++.
T Consensus 55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444433
No 341
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.05 E-value=34 Score=36.91 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
..-|.++.+.+.+|..++.+|+.....|.++-+++.++..+.-.++..|+-++..|++|+.
T Consensus 257 ~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 257 IDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQIT 317 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Confidence 3467778888888888888888887777777777777777777777777777777777664
No 342
>PRK11415 hypothetical protein; Provisional
Probab=70.89 E-value=26 Score=25.78 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIKSLKA--------EKNELREEKLILKADKEKL 152 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~--------eknELr~Ek~~Lk~e~e~L 152 (214)
...+|.++...|..+|..+.. ++.+|+-++..||-+|.++
T Consensus 18 ~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~ 65 (74)
T PRK11415 18 RFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKI 65 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence 445555555666666655443 3444555555555554444
No 343
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.83 E-value=34 Score=36.15 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=37.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcC
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK-------ADKEKLEQQLKVMAM 161 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk-------~e~e~L~~qlk~~~~ 161 (214)
++--.+=.-|-+|+.+|...+++++.....+..++..|++...+|.-|+..|+ .++..|..|+.-+-.
T Consensus 639 ~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 639 TEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566777777777777776665555555555554444444444443 444445555544433
No 344
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.72 E-value=6.2 Score=28.55 Aligned_cols=29 Identities=34% Similarity=0.513 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKAD 148 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e 148 (214)
+.+.|++.|.+|....++|..||..||+-
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666777777777777777653
No 345
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=70.60 E-value=16 Score=33.88 Aligned_cols=69 Identities=28% Similarity=0.315 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 64 KACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 64 H~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+..-++.||.+.+....+.|-.= -|-+=-..+..-++.|..+.++|+.+...|..||++||+-+-|.+.
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRq--------KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQ--------KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888888886666543 1223334445566677777777777777777777777766665443
No 346
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.60 E-value=29 Score=37.44 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+|.+++.-+..|.....+|+++..+.......+.....+|+.++..|+.|...|..|+..+
T Consensus 495 k~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 495 KSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35666666677777766666666666655555555555566665555555555555555443
No 347
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=70.58 E-value=41 Score=24.88 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 109 QLRTESQELKE----TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 109 ~Lr~~vq~L~~----~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
+|....+.|+. .....+.....|......-..++..|..++..|.+|+..++.+
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 3345556666677777777777778888888888888877654
No 348
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=70.57 E-value=29 Score=26.90 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 96 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 96 KasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
.+-|..+.-+.+..|..+++.++.....|..+..+|.....+++.+.
T Consensus 58 ~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 58 NLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred hhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566666666666666666666666666666655544
No 349
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=70.27 E-value=36 Score=32.45 Aligned_cols=21 Identities=48% Similarity=0.544 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~e~ 151 (214)
|..++++|.++...|+.++++
T Consensus 387 l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 387 LKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 350
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=70.23 E-value=12 Score=31.14 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNE----KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~----~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.+|+.+.+.|++... ....|++.|...-..+.+-...|+++.|+-++++++
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkA 112 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKA 112 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhh
Confidence 467888888877543 666778888888878888788888888888888886
No 351
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.06 E-value=34 Score=29.98 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAE---------KNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~e---------knELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
++..+...++...+.|+.+.+.|..- +-+++.|....+.|||.++.|++.+.
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444331 22456666677777777777777764
No 352
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=69.92 E-value=23 Score=28.22 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
.++.+|..+.++|+.+...|..++..|...+.++..
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666666666665544
No 353
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=69.92 E-value=29 Score=37.74 Aligned_cols=80 Identities=25% Similarity=0.349 Sum_probs=44.3
Q ss_pred HHHHhhhc-CCCCCCCCChhh-----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 79 FLDLSCIL-EPGRPARTDKPA-----ILDDAIRVLNQLRTES-------QELKETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 79 F~~LrslL-PP~~~~K~DKas-----IL~dAI~yIk~Lr~~v-------q~L~~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
+..|...| -| ......|+. +|.+..+-|..|+... ++.-.....|++|++-|+.||..+-..+...
T Consensus 1079 LesLQRAV~TP-Vvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkV 1157 (1439)
T PF12252_consen 1079 LESLQRAVVTP-VVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKV 1157 (1439)
T ss_pred HHHHHHhhccc-ccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcc
Confidence 66666444 23 223344443 6667777777776632 2222233445555555555555443333333
Q ss_pred -HHHHHHHHHHHHHh
Q 028060 146 -KADKEKLEQQLKVM 159 (214)
Q Consensus 146 -k~e~e~L~~qlk~~ 159 (214)
-++||+||+||+.+
T Consensus 1158 DFSDIEkLE~qLq~~ 1172 (1439)
T PF12252_consen 1158 DFSDIEKLEKQLQVI 1172 (1439)
T ss_pred cHHHHHHHHHHHHHh
Confidence 48999999999875
No 354
>PLN02678 seryl-tRNA synthetase
Probab=69.90 E-value=35 Score=33.25 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 130 SLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 130 eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+|..+..+|.++...|..+...++.++..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666655
No 355
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=69.64 E-value=25 Score=34.61 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+|+..|-..+++.....+.+...++.|.....|++++...++.+++.|
T Consensus 432 rYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l 479 (507)
T PF05600_consen 432 RYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDAL 479 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455444444444444444444444444444444444444444433333
No 356
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.44 E-value=30 Score=34.14 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028060 143 LILKADKEKLEQQLKVM 159 (214)
Q Consensus 143 ~~Lk~e~e~L~~qlk~~ 159 (214)
.....+|..|+.||+.+
T Consensus 431 ~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 34456777788888763
No 357
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=69.29 E-value=33 Score=28.46 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=42.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNE-KLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~-~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.|-..+=..--+|+.+++-+..+.--+|. .|++...+|..|+|.+|.|-..+.
T Consensus 52 ~d~~~lr~~L~~YLD~IKm~RAkY~lENky~L~~tL~~LtkEVn~Wr~ewd~iE 105 (132)
T PF09432_consen 52 TDTEELRAQLDRYLDDIKMERAKYSLENKYSLQDTLNQLTKEVNYWRKEWDNIE 105 (132)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556677899999988888877765 678889999999999999876553
No 358
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=68.92 E-value=37 Score=34.52 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 73 ERLNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 73 dkLN~~F~~LrslLP-P~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
..|++-|..|.++-- |. .-.-+..+|..|-..+.+++.--.+|......+..+|+..-.++|.|-++...|..+|
T Consensus 107 ~~l~~ff~a~q~la~~P~--~~~~Rq~vl~~A~~L~~~fn~~~~~L~~~~~~~n~~I~~~V~~iN~l~~qIA~LN~qI 182 (649)
T PRK12715 107 VPLQTFFDSIGQLNSTPD--NIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVNGKL 182 (649)
T ss_pred HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566655551 11 2355777899988888888888778877777777777777777777777776666555
No 359
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.76 E-value=34 Score=32.04 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhcCCCCCC
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL---------------ILKADKEKLEQQLKVMAMPTGGY 166 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~---------------~Lk~e~e~L~~qlk~~~~~p~g~ 166 (214)
.|..|+.++..|+.+...++.+...|..||.+|..... .|.+++..|+.+|..-.+.|+.+
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~ 211 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSP 211 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
No 360
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=68.73 E-value=1.7 Score=34.25 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
|+.++-.+..++..|..+++.|+.|...|+.+.+.|+.+...
T Consensus 4 Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 4 LDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ---------------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444445555555555555555555555554443
No 361
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=68.69 E-value=61 Score=33.26 Aligned_cols=49 Identities=29% Similarity=0.391 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHH-HHHhhhcCCCC--------CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028060 64 KACREKLRRERLNDRF-LDLSCILEPGR--------PARTDKPAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 64 H~~~ERkRRdkLN~~F-~~LrslLPP~~--------~~K~DKasIL~dAI~yIk~Lr~~vq~L~ 118 (214)
|-..|+.|+ .| .+|.+++| |. .++.|=-+++.-|+..|.+|+.+++.++
T Consensus 281 ~~~ve~ar~-----~F~~EL~si~p-~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k 338 (657)
T KOG1854|consen 281 SELVEKARH-----QFEQELESILP-GLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQK 338 (657)
T ss_pred HHHHHHHHH-----HHHHHHHHhcC-CCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555554 44 49999995 22 1233434789999999999999888855
No 362
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=68.69 E-value=36 Score=31.59 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIK----SLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~----eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
|.++-...++|+.++++|.-+.+.+.++.+ +--++...|+++++.+++.+|.|+
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~ 111 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLR 111 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555554443333332221 112233446666666665555543
No 363
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=68.68 E-value=19 Score=26.62 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILEPGRP--ARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~--~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
.+..-..+|..+- ++.. ....++=|+.+.-+++..|+.+.+.++.+...|..+.+++..+.++++...
T Consensus 30 ~~~~~~~eL~~l~-~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 30 ELELTLEELEKLD-DDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHTSS-TT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666654 4321 123455566666677777777777777777777776666666666665533
No 364
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=68.50 E-value=42 Score=24.19 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKA 133 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~ 133 (214)
++++++..++...+.+.+.+..|..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~ 27 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333
No 365
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.44 E-value=35 Score=36.86 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.+=+..-|.-+-.|+.+-+.|..+.+.|++++.++.+.+.+|++.--.|+.|.++|+.+...
T Consensus 393 sss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 393 SSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred hhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556667777777777888888888888888888888888888888888776655
No 366
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.38 E-value=63 Score=31.76 Aligned_cols=91 Identities=20% Similarity=0.409 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 69 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~---~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
-.|-+.|++++..+..+. + |-. .-+.+-++|+.+++.+++.++. ..+.|+.++.+++.+..++-.+....
T Consensus 300 p~~L~ele~RL~~l~~Lk---r--Kyg--~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLK---R--KYG--ASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHH---H--HhC--CCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777766 2 111 2366777888888888877764 45667777777777776665555544
Q ss_pred HHH-----HHHHHHHHHHhcCCCCCC
Q 028060 146 KAD-----KEKLEQQLKVMAMPTGGY 166 (214)
Q Consensus 146 k~e-----~e~L~~qlk~~~~~p~g~ 166 (214)
+.+ .+.+..+|+.+..+..-|
T Consensus 373 R~~~a~~l~~~v~~~l~~L~m~~~~f 398 (563)
T TIGR00634 373 RRKAAERLAKRVEQELKALAMEKAEF 398 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 222 233455666655544333
No 367
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.27 E-value=30 Score=39.50 Aligned_cols=55 Identities=31% Similarity=0.425 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++.+.+|+.+...|..+...|...+.++..-+.||...+..|..+++.|+.+|..
T Consensus 1483 ~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE 1537 (1930)
T KOG0161|consen 1483 LEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE 1537 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444555555555666666655544
No 368
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=68.01 E-value=12 Score=31.07 Aligned_cols=22 Identities=27% Similarity=0.284 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNE 122 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~ 122 (214)
.....-.++|+.|+.+|++|+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELN 57 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666665543
No 369
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=67.99 E-value=60 Score=25.82 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.|++....-...++.+.+|..-|.=.|..|-..++.|+.++..
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555566666666666677777777777764
No 370
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.97 E-value=19 Score=35.27 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 96 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 96 KasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
...||.+... +..|+.+.+++..+...++.++++++.+..++..+...|+
T Consensus 146 ~~~lLD~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~ 195 (563)
T TIGR00634 146 QRQLLDTFAG-ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQ 195 (563)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3345555444 3445555544444444444444444444444444333333
No 371
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=67.96 E-value=38 Score=33.22 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEK-------LILKADKEKLEQQLKV 158 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek-------~~Lk~e~e~L~~qlk~ 158 (214)
.|....+.|+.++...+.+++.+++.- ..|+.++.++..+|..
T Consensus 306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 333344444444444444444444333 3444444455555444
No 372
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=67.92 E-value=43 Score=33.02 Aligned_cols=59 Identities=22% Similarity=0.355 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.+-+.-+++.+..+.++......+.+++.++..+..+++.....|.++.-.|+.++..
T Consensus 434 vdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 434 VDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667777766666666666666666666666666666555555555543
No 373
>PRK15396 murein lipoprotein; Provisional
Probab=67.91 E-value=42 Score=25.34 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.++++|..+...|..++..+....+.+|.....-+.|-+|--+-|..
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888888888888888888888888777777777766655543
No 374
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=67.90 E-value=38 Score=33.21 Aligned_cols=48 Identities=35% Similarity=0.381 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+..+++..+..+.....++..|+....-|+.|....|.++.+|.+...
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444455555555555555544443
No 375
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.88 E-value=95 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCC
Q 028060 137 ELREEKLILKADKEKLEQQLKV--MAMPTGGYM 167 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~qlk~--~~~~p~g~~ 167 (214)
+++.+...++.+++.++.++.. +.+|-.|..
T Consensus 250 ~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 250 EAQARLAELRERLNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence 3444444555555555555554 245556655
No 376
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=67.81 E-value=60 Score=27.47 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|+.++|.-|..=+.++-..-+ ..+.+...|+.|+.+++.+....-.+.++|+...+
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E---~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er 58 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAE---QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRER 58 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888777776655443 22344455555555555555555555565554443
No 377
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=67.56 E-value=65 Score=26.50 Aligned_cols=62 Identities=26% Similarity=0.274 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 98 AILDDAIRVLNQLRTESQEL-KETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L-~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.....+|.-|-.|.+++=.- .+....|+.|.+-|+..+-.+++--..-+..++.|+.||+.+
T Consensus 63 ~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 63 MFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 37778888888888775443 344566677777777666666665566678889999998864
No 378
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=67.39 E-value=17 Score=29.12 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYM 167 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~ 167 (214)
|++.-.+.+++...|-.+.-+|+.-++.|.+...-..+|+.+|+.|..-|-|-+..+-+..+-|.
T Consensus 47 a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQ 111 (120)
T KOG3650|consen 47 AVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQ 111 (120)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhh
Confidence 34445566777778888888899999999999999999999999999888887776433333344
No 379
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=67.29 E-value=9.8 Score=27.83 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 137 ELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~qlk 157 (214)
||.++...|+.||+||+.|+.
T Consensus 29 El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 29 ELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455544443
No 380
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.26 E-value=58 Score=32.32 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei 128 (214)
|.+.-.|+.+|...+..+......|..+.
T Consensus 288 l~dgeayLaKL~~~l~~~~~~~~~ltqqw 316 (521)
T KOG1937|consen 288 LDDGEAYLAKLMGKLAELNKQMEELTQQW 316 (521)
T ss_pred cCChHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445788888888777776666665544
No 381
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=67.20 E-value=24 Score=24.80 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.|..+|.++...+ .. +. -.|...+..+.+.-......|-++++.|....+ ...+-.++..|+
T Consensus 2 ~Lw~~F~~a~~~~---~~-~~---------~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d-----~~~~~~~~k~l~ 63 (77)
T PF03993_consen 2 ELWKRFRAACDAF---FD-RR---------KEFFEEQDAEREENLEKKEALIEEAEALAESED-----WKEAAEEIKELQ 63 (77)
T ss_pred HHHHHHHHHHHHH---HH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHH
Confidence 4666676666666 10 00 134444444444444444444444444443222 345556777788
Q ss_pred HHHHHh
Q 028060 154 QQLKVM 159 (214)
Q Consensus 154 ~qlk~~ 159 (214)
++.+.+
T Consensus 64 ~~Wk~i 69 (77)
T PF03993_consen 64 QEWKEI 69 (77)
T ss_pred HHHHHc
Confidence 888876
No 382
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.13 E-value=51 Score=31.21 Aligned_cols=7 Identities=29% Similarity=0.980 Sum_probs=4.3
Q ss_pred CCCCcCC
Q 028060 20 SLDFSWP 26 (214)
Q Consensus 20 ~~~~~w~ 26 (214)
..+|.|.
T Consensus 116 ~~~F~~~ 122 (359)
T PF10498_consen 116 RKNFKWK 122 (359)
T ss_pred hcCcCcc
Confidence 4567774
No 383
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=67.04 E-value=8.4 Score=33.05 Aligned_cols=61 Identities=26% Similarity=0.289 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 73 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETN--EKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 73 dkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n--~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
.++|+.+.+|.+.|- + .+||-+|..+.+--.+.+ -++..++-++..++.+.+|+.. |++.+
T Consensus 59 a~lnkAY~TLk~pL~--R-------------A~Yilkl~g~e~~sne~stDpe~Lmevle~~E~IS~~~De~~-l~~lk 121 (168)
T KOG3192|consen 59 AELNKAYDTLKDPLA--R-------------ARYLLKLKGQEQTSNELSTDPEFLMEVLEYHEAISEMDDEED-LKQLK 121 (168)
T ss_pred HHHHHHHHHHHhHHH--H-------------HHHHHHHhCCCCchhhhccCHHHHHHHHHHHHHHHhccCcHH-HHHHH
Confidence 369999999999882 2 278888887443333332 2677778888888888777775 44333
No 384
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.94 E-value=48 Score=31.92 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhc
Q 028060 65 ACREKLRRERLNDRFLDLSCIL 86 (214)
Q Consensus 65 ~~~ERkRRdkLN~~F~~LrslL 86 (214)
.......+..+...+.+|+++-
T Consensus 204 ~~~~~~~~~~l~~~~~el~eik 225 (395)
T PF10267_consen 204 SSVSSQQNLGLQKILEELREIK 225 (395)
T ss_pred ccccccccchHHHHHHHHHHHH
Confidence 4455556666666666665544
No 385
>PRK02119 hypothetical protein; Provisional
Probab=66.92 E-value=48 Score=24.36 Aligned_cols=51 Identities=6% Similarity=0.060 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.-+.|.+|+.++.-++...+.|...+-+-.+++..|+.+...|...+..++
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777777777777777777777777777777777666665555544
No 386
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=66.89 E-value=36 Score=27.56 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=32.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
+||-.|... |..|..++-.|-.+...|+..+.+|-.|.+-||-|+..|+.-...
T Consensus 1 mdKkeiFd~----v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 1 MDKKEIFDQ----VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred CCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 456665543 445666666666666666666666666666666666666544443
No 387
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=66.87 E-value=46 Score=24.64 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhc
Q 028060 74 RLNDRFLDLSCIL 86 (214)
Q Consensus 74 kLN~~F~~LrslL 86 (214)
+||.....|..++
T Consensus 7 ~in~~v~~l~k~~ 19 (102)
T PF14523_consen 7 KINQNVSQLEKLV 19 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666555
No 388
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=66.79 E-value=47 Score=32.59 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=35.3
Q ss_pred CCCccCCCCCCCCCCCchhHHHHH-HHHHHHHHHHHHhhhcCC-C------CCCCCCh--hhHHHHHHHHHHHHHHHHHH
Q 028060 47 ENTRKRARSDSCSRPGSKACREKL-RRERLNDRFLDLSCILEP-G------RPARTDK--PAILDDAIRVLNQLRTESQE 116 (214)
Q Consensus 47 ~~~~kR~r~~~~~~~~sH~~~ERk-RRdkLN~~F~~LrslLPP-~------~~~K~DK--asIL~dAI~yIk~Lr~~vq~ 116 (214)
.++||++|......+...-..+|+ ==.-||+.+.-++.---+ + ...+.+| ..-|-+.-+-|++|+....+
T Consensus 352 ~gkrk~~rkrk~~aKa~~ree~r~dvF~fiNekl~g~~~~~~~~~rkkt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~k 431 (486)
T KOG2185|consen 352 GGKRKRGRKRKEAAKAAKREEERKDVFSFINEKLFGTRHEKVHSERKKTRENAGPSDKTLGAALVEYEDEIRRLKRDMLK 431 (486)
T ss_pred cccccchhhhhhhccccCCccccccHHHHHHHHhcccccccccchhhhhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345555655444444444444443 224456655543332211 1 1234555 11344445557777777666
Q ss_pred HHHH
Q 028060 117 LKET 120 (214)
Q Consensus 117 L~~~ 120 (214)
|++.
T Consensus 432 lkq~ 435 (486)
T KOG2185|consen 432 LKQM 435 (486)
T ss_pred HHHH
Confidence 6653
No 389
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.75 E-value=30 Score=37.15 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKE 119 (214)
Q Consensus 107 Ik~Lr~~vq~L~~ 119 (214)
.++|+.+.++|++
T Consensus 370 fkqlEqqN~rLKd 382 (1243)
T KOG0971|consen 370 FKQLEQQNARLKD 382 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555553
No 390
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=66.68 E-value=38 Score=31.55 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=34.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+.++--|.--.+||--++.+.+..+.+-..|.+++..|+....++|.+....+.-+|-|.
T Consensus 53 tervrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 53 TERVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333345666666666666666666666666666666666666655554444443
No 391
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=66.67 E-value=46 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 028060 72 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRT 112 (214)
Q Consensus 72 RdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~ 112 (214)
-+.||+++.++++..| . ...++..+| -|+.+..++..
T Consensus 27 a~~i~~~i~~~~~~~~--~-~~~~~~~vl-aaLnla~e~~~ 63 (89)
T PF05164_consen 27 AELINEKINEIKKKYP--K-LSPERLAVL-AALNLADELLK 63 (89)
T ss_dssp HHHHHHHHHHHCTTCC--T-SSHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--C-CCHHHHHHH-HHHHHHHHHHH
Confidence 3678999999999874 2 246666666 45555554443
No 392
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.65 E-value=60 Score=34.47 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=41.9
Q ss_pred CChhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIR----VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 94 ~DKasIL~dAI~----yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+...+.|..|.+ .+++|+.++..|..+.+.-..+|+-++.++.||+++...+...+++|
T Consensus 527 ~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 527 TQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665543 35677888888888888888888888888888888876555444443
No 393
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=66.44 E-value=48 Score=26.80 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=6.4
Q ss_pred CchhHHHHHHHH
Q 028060 62 GSKACREKLRRE 73 (214)
Q Consensus 62 ~sH~~~ERkRRd 73 (214)
..|.+-=|.|+.
T Consensus 41 ~~h~~e~~l~~~ 52 (134)
T PF07047_consen 41 SYHRFEVRLKMR 52 (134)
T ss_pred HHHHHHHHHHHH
Confidence 446555555553
No 394
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=66.43 E-value=18 Score=35.42 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+.+|..+.++++.+.+.|..++++|..+-.++-.+...++.+++++.++.
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~ 227 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEE 227 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777777777777777666666666666665443
No 395
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=66.31 E-value=21 Score=35.91 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
+|..==-+||+++=.+++.|+++|+.+..++++++.++..++++
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444446788888888888888888887777777777776654
No 396
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=66.08 E-value=30 Score=30.96 Aligned_cols=48 Identities=27% Similarity=0.554 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+|..++ ..|+..+..|+.+...+...+..|..|+.+ +......|+..|
T Consensus 205 ~L~~~~---~rL~~~l~~le~~~~~~~~~l~~l~~E~~~-------I~~re~elq~~l 252 (254)
T PF15458_consen 205 SLSECL---ERLRESLSSLEDSKSQLQQQLESLEKEKEE-------IEEREKELQELL 252 (254)
T ss_pred chhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 566555 455555556655555555555555444444 444444444444
No 397
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=66.04 E-value=64 Score=27.86 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+=..|+.-....+..+..|+.+...+...+..|+..+.+|+.....++....-|-...+.
T Consensus 86 LAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 86 LARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666667777777777777777777777777777777777666666555544
No 398
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.97 E-value=28 Score=34.68 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=4.7
Q ss_pred hhhHHHHHH
Q 028060 96 KPAILDDAI 104 (214)
Q Consensus 96 KasIL~dAI 104 (214)
...+|.+||
T Consensus 167 ~~~~l~~Ai 175 (650)
T TIGR03185 167 LASLLKEAI 175 (650)
T ss_pred chHHHHHHH
Confidence 444566664
No 399
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=65.87 E-value=78 Score=27.52 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 130 SLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 130 eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.|...-.++-..+..+...+..|++|++.
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444555555555544
No 400
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=65.69 E-value=31 Score=34.51 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=40.1
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Q 028060 98 AI-LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK----LILKADKEKLEQQLKVMA 160 (214)
Q Consensus 98 sI-L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek----~~Lk~e~e~L~~qlk~~~ 160 (214)
|| |.++|.-++.+- .+|...++.+..+.-+...+.+++++++ ...+.|+|+|+.+|..++
T Consensus 482 si~Lee~i~~~~~~i---~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 482 SITLEEDIKNLKHDI---NELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred ceeHHHHhhhHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44 887776665554 4455556666666666666666665555 455799999999998864
No 401
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=65.62 E-value=42 Score=25.83 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
=|.+|..+|+.|.....++..++..++.....-.+|-.+-.+.++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466777777777777777777777777666665555555444443
No 402
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=65.45 E-value=41 Score=30.62 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 134 EKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 134 eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+++++..+...|+.|..+|...|..
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344455556777888887776654
No 403
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=65.30 E-value=52 Score=31.58 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 130 SLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 130 eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.|..-+..+++||+.|+.+.+.+.++.
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333344445666666665555555544
No 404
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.01 E-value=1.1e+02 Score=30.36 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 028060 143 LILKADKEK 151 (214)
Q Consensus 143 ~~Lk~e~e~ 151 (214)
..|+.|+-.
T Consensus 438 ~dLqEQlrD 446 (493)
T KOG0804|consen 438 TDLQEQLRD 446 (493)
T ss_pred HHHHHHHHh
Confidence 334444333
No 405
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=64.55 E-value=23 Score=31.24 Aligned_cols=47 Identities=36% Similarity=0.418 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQE-L---KETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 105 ~yIk~Lr~~vq~-L---~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
.|=+.|-++-+. | -.+|+.|..+|..+..|++.|++|+..|+.-.+.
T Consensus 107 ~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~ 157 (200)
T PF07412_consen 107 NYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEH 157 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676766554333 2 2467778777888788888888887777654443
No 406
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=64.43 E-value=28 Score=31.66 Aligned_cols=20 Identities=30% Similarity=0.157 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 132 KAEKNELREEKLILKADKEK 151 (214)
Q Consensus 132 ~~eknELr~Ek~~Lk~e~e~ 151 (214)
..+.+.|++||.+|+....-
T Consensus 89 ~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 89 LEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 34555567777777654433
No 407
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=64.39 E-value=30 Score=28.94 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+++.|+.+...+.+.|+.-+..+.||......+|.=+.|=++-.
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~ 45 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLE 45 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57788888888999999989999999888888876666655433
No 408
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=64.37 E-value=17 Score=27.96 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=10.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Q 028060 63 SKACREKLRRERLNDRFLDLSCIL 86 (214)
Q Consensus 63 sH~~~ERkRRdkLN~~F~~LrslL 86 (214)
.+.+.||. |..+|.+|-.++
T Consensus 24 ~~I~~Er~----v~~kLneLd~Li 43 (109)
T PF03980_consen 24 EEILEERD----VVEKLNELDKLI 43 (109)
T ss_pred HHHHHHhh----HHHHHHHHHHHH
Confidence 34455544 445555555554
No 409
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.25 E-value=49 Score=35.61 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 65 ACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 65 ~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~ 144 (214)
...+..++..+-+....|++.+..-. .-++.|++++++....++.++.++..++.+..++..+...
T Consensus 624 ~~~l~~~~~~~ee~~~~~~~~~~~~~--------------~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~ 689 (1072)
T KOG0979|consen 624 SPVLEELDNRIEEEIQKLKAEIDIRS--------------STLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKS 689 (1072)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 028060 145 LKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 145 Lk~e~e~L~~qlk~~~~~ 162 (214)
.++.+++++.+...+.++
T Consensus 690 ~~~r~~~ie~~~~~l~~q 707 (1072)
T KOG0979|consen 690 YQQRKERIENLVVDLDRQ 707 (1072)
T ss_pred HHHHHHHHHHHHHHHHHH
No 410
>PLN02320 seryl-tRNA synthetase
Probab=64.17 E-value=1e+02 Score=30.58 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEI---------KSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei---------~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++|+.+++.|+.+...+-.++ ++|+.+..+|+++...|+.+...++.++..
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444433333 345556666666666666666666666655
No 411
>PLN03188 kinesin-12 family protein; Provisional
Probab=63.78 E-value=45 Score=36.73 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH----------H--------------HHHHHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKE-----------TNEKLQEEIKSLK----------A--------------EKNELR 139 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~-----------~n~~L~~ei~eL~----------~--------------eknELr 139 (214)
-||++=+.-.+||+-|-.++..|+. +|..|+.+++.-. . .-.+..
T Consensus 1145 akag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~e 1224 (1320)
T PLN03188 1145 ARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAE 1224 (1320)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555656566777777777666653 4666654432211 1 112467
Q ss_pred HHHHHHHHHHHHHH
Q 028060 140 EEKLILKADKEKLE 153 (214)
Q Consensus 140 ~Ek~~Lk~e~e~L~ 153 (214)
+|+..++.++++|.
T Consensus 1225 qe~~~~~k~~~klk 1238 (1320)
T PLN03188 1225 QEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888885
No 412
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=63.72 E-value=52 Score=36.09 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~ 118 (214)
..-|.++++-+.+++.+++.|+
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~ 243 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLE 243 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 413
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=63.57 E-value=2.5 Score=33.33 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
.+|..+...+.++...|+.++..|..++.+|+++...|..+.
T Consensus 2 ~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 2 QELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp -----------------------------------------H
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555555555555555554333
No 414
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=63.47 E-value=4.2 Score=31.61 Aligned_cols=43 Identities=35% Similarity=0.561 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
.|...+.-+..|..++..|+.++..|+.++..++.....|++.
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~ 68 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRA 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 3444445555555555555555555555554444444444443
No 415
>PRK14160 heat shock protein GrpE; Provisional
Probab=63.27 E-value=39 Score=29.85 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=3.7
Q ss_pred cCcccCC
Q 028060 205 RDHELRP 211 (214)
Q Consensus 205 ~d~~~~p 211 (214)
.|-+|||
T Consensus 198 ~dRVLRp 204 (211)
T PRK14160 198 GDKVIRY 204 (211)
T ss_pred CCEeeec
Confidence 4555555
No 416
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=63.26 E-value=44 Score=25.43 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
|..++.++++.+.....++..+++|..++.|+..
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888887643
No 417
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=63.14 E-value=95 Score=27.09 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 028060 149 KEKLEQQL 156 (214)
Q Consensus 149 ~e~L~~ql 156 (214)
|..|.++|
T Consensus 178 i~~L~~~l 185 (237)
T PF00261_consen 178 IRDLEEKL 185 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 418
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=63.09 E-value=38 Score=35.43 Aligned_cols=53 Identities=36% Similarity=0.429 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK---LILKADKEKLEQQLKV 158 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek---~~Lk~e~e~L~~qlk~ 158 (214)
-|..|+-++..|+.....|-+++-.|+.+..+|+++. ..++++.+.|+|-+.+
T Consensus 867 Elthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a 922 (961)
T KOG4673|consen 867 ELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAA 922 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777776554 3556777777665544
No 419
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=63.05 E-value=46 Score=24.74 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 111 RTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 111 r~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
...+..|..+++.|..+.+....+...++++.
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444444433
No 420
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=63.02 E-value=83 Score=25.72 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 63 SKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 63 sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
+|-.+|..+ -+++.+..|-..|-. .--|.-+|..+. .++.-++++....+-..-|-.|..|+|-|.+|+
T Consensus 44 nqqLreQqk--~L~e~i~~LE~RLRa---GlCDRC~VtqE~------akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN 112 (120)
T PF10482_consen 44 NQQLREQQK--TLHENIKVLENRLRA---GLCDRCTVTQEL------AKKKQQEFESSHLQSLQHIFELTNEMNTLKEEN 112 (120)
T ss_pred cHHHHHHHH--HHHHHHHHHHHHHhc---ccchHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455556554 467777777777722 223444444332 234455566655555556778888888888888
Q ss_pred HHHHHHH
Q 028060 143 LILKADK 149 (214)
Q Consensus 143 ~~Lk~e~ 149 (214)
..|+.|+
T Consensus 113 ~~L~eEl 119 (120)
T PF10482_consen 113 KKLKEEL 119 (120)
T ss_pred HHHHHHh
Confidence 8887664
No 421
>PRK09343 prefoldin subunit beta; Provisional
Probab=62.97 E-value=76 Score=25.22 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.|..+++.+..++..|......|+..+.+++.+|+.+
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555666666666655
No 422
>PRK14148 heat shock protein GrpE; Provisional
Probab=62.77 E-value=24 Score=30.70 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
++.|++++..|+.+..+|++...++.++.+.+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~ 73 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENI 73 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555444443
No 423
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=62.76 E-value=27 Score=34.39 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.|+...+.|+.+++.|.+....|++.+.|+|.+.-.||+..+-++
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q 454 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQ 454 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777788888888888888888888888888888887776554
No 424
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=62.76 E-value=28 Score=27.13 Aligned_cols=34 Identities=38% Similarity=0.418 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
.+|..+.++|+++.+.|+..+..|...+++++.=
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~ 35 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETA 35 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666665443
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.57 E-value=46 Score=34.30 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTE-SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~-vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|.=-.++++.|+++ +..+..-..+++..++.|+.++....++...++.+++.|
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666667766 566665566666666666666665555555555444444
No 426
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=62.56 E-value=67 Score=24.45 Aligned_cols=46 Identities=13% Similarity=0.360 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
|.+|-..++.|-...++|....+.++.++.--.+|..+-++++++.
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 4455555555555555555555555566665666666655555544
No 427
>PRK04863 mukB cell division protein MukB; Provisional
Probab=62.54 E-value=51 Score=36.82 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhc
Q 028060 71 RRERLNDRFLDLSCIL 86 (214)
Q Consensus 71 RRdkLN~~F~~LrslL 86 (214)
+..+|++.+.+|..-+
T Consensus 308 nL~rI~diL~ELe~rL 323 (1486)
T PRK04863 308 RLVEMARELAELNEAE 323 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 428
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=62.53 E-value=1.3e+02 Score=29.89 Aligned_cols=94 Identities=21% Similarity=0.366 Sum_probs=64.1
Q ss_pred CchhHHHHHH-----HHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 62 GSKACREKLR-----RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 62 ~sH~~~ERkR-----RdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
.+|...++-| =+.|...|..+...+ .++...-+...+-+.++..++..++++...+.+.+..|..+-.
T Consensus 338 L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i-------~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~ 410 (560)
T PF06160_consen 338 LNHNELEIVRELEKQLKELEKRYEDLEERI-------EEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEK 410 (560)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554443 234444455555444 2333445555667777778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 137 ELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
+.|+....++.++..+...++..+-|
T Consensus 411 ~Ar~~l~~~~~~l~~ikR~lek~nLP 436 (560)
T PF06160_consen 411 EAREKLQKLKQKLREIKRRLEKSNLP 436 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888877666
No 429
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=62.53 E-value=51 Score=35.38 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 028060 99 ILDDAIRVL 107 (214)
Q Consensus 99 IL~dAI~yI 107 (214)
-+..++.-+
T Consensus 797 ~~~~~~~~~ 805 (1163)
T COG1196 797 ELEEELEEA 805 (1163)
T ss_pred HHHHHHHHH
Confidence 344443333
No 430
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=62.42 E-value=61 Score=26.72 Aligned_cols=43 Identities=30% Similarity=0.385 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
+++.-|+.|+..+..| ..++|++-.+.|..-++|-++|....+
T Consensus 6 k~l~niR~lra~~re~--~~e~Lee~~ekl~~vv~er~ee~~~~~ 48 (135)
T PRK10947 6 KILNNIRTLRAQAREC--TLETLEEMLEKLEVVVNERREEESAAA 48 (135)
T ss_pred HHHHhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777776655 334444444445555555554444333
No 431
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=62.41 E-value=33 Score=31.94 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 96 KPAILDDAIRVLNQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 96 KasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei 128 (214)
|.++=++|..-|.+|+.++++|++++.+-+-.+
T Consensus 9 KeGL~~~aLqKIqelE~QldkLkKE~qQrQfQl 41 (307)
T PF10481_consen 9 KEGLPTRALQKIQELEQQLDKLKKERQQRQFQL 41 (307)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344557889999999999999998765444333
No 432
>PF14645 Chibby: Chibby family
Probab=62.39 E-value=30 Score=27.71 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
..|+++.++|++||.-|+-+++-|-.=+.|..-|.
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~ 108 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTETTAEA 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555566666666555555544444444443333
No 433
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=62.35 E-value=1.2e+02 Score=30.63 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028060 63 SKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKET 120 (214)
Q Consensus 63 sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~ 120 (214)
.+...|-++|.+|+.-..+-..+=-..+.+|.+|.++...=-..|+.|++++...+++
T Consensus 254 Akmrleekhr~rmd~VmkEW~~ae~qaKnPKAekqalnqhFQ~~v~sLEee~a~erqq 311 (615)
T KOG3540|consen 254 AKMRLEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARERQQ 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999998887766553334467777666555555555555555444443
No 434
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.29 E-value=77 Score=28.10 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
-..-..|+.-+..|+..+..++.+...+.+.+..|+..+.+|......++++++-|
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777666666665555555555555555544444444444443
No 435
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.26 E-value=21 Score=38.37 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=20.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028060 92 ARTDKPAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 92 ~K~DKasIL~dAI~yIk~Lr~~vq~L~ 118 (214)
.|+.|..+|.|=+.-|-.|+..+...+
T Consensus 398 Qkl~K~~llKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 398 QKLMKKTLLKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 478888898888888888877655444
No 436
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=62.21 E-value=7.9 Score=38.22 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 127 EIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 127 ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+|++|++|+.||+++...|+..+++.+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhh
Confidence 344444444444444444444444443
No 437
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=62.13 E-value=81 Score=27.05 Aligned_cols=63 Identities=30% Similarity=0.492 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhcCCCCCCCCChh------hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 028060 75 LNDRFLDLSCILEPGRPARTDKP------AILDDAIRVLNQLRTESQELKET---NEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 75 LN~~F~~LrslLPP~~~~K~DKa------sIL~dAI~yIk~Lr~~vq~L~~~---n~~L~~ei~eL~~eknELr~ 140 (214)
+|..|..+..++-.+ -.|+- .+|.+.-.-|..|+.+++.|... +..+.+.|+++..+++++|+
T Consensus 85 f~~~~k~~~~ifkeg---g~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d 156 (163)
T PF03233_consen 85 FESFFKDLSKIFKEG---GGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRD 156 (163)
T ss_pred HHHHHHHHHHHHHhc---CCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHH
Confidence 455676777777322 12332 24444444455555555555442 23444555555555555555
No 438
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=62.11 E-value=17 Score=27.47 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknE 137 (214)
.|.++|..|+++++.|++|+.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444433
No 439
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=62.11 E-value=38 Score=34.29 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
+|+..|+.++++|.++|+.|+.|-..|++++.+|-.|+..+|
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 788888888888888888888888888888888888887775
No 440
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=62.03 E-value=50 Score=31.36 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=5.1
Q ss_pred CCCcccccCC
Q 028060 189 LMPMWQYLPP 198 (214)
Q Consensus 189 ~~~mwq~~pp 198 (214)
|+|++-.+|-
T Consensus 453 glpvLg~iP~ 462 (498)
T TIGR03007 453 GLPVLGVIPM 462 (498)
T ss_pred CCCeEEecCC
Confidence 4555555553
No 441
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=61.97 E-value=14 Score=27.96 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 130 SLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 130 eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+|+.++.+|+++...+..++.-+
T Consensus 74 ~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 74 ELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 442
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=61.85 E-value=52 Score=29.83 Aligned_cols=6 Identities=17% Similarity=0.008 Sum_probs=2.3
Q ss_pred HHhhhc
Q 028060 81 DLSCIL 86 (214)
Q Consensus 81 ~LrslL 86 (214)
.|.+.+
T Consensus 99 ~l~~~~ 104 (423)
T TIGR01843 99 RLRAEA 104 (423)
T ss_pred HHHHHH
Confidence 333333
No 443
>smart00340 HALZ homeobox associated leucin zipper.
Probab=61.82 E-value=35 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 129 KSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e 150 (214)
+.|+.--+.|-+||.+|+.|..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~ 29 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQ 29 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555543
No 444
>PLN02678 seryl-tRNA synthetase
Probab=61.70 E-value=1e+02 Score=30.12 Aligned_cols=30 Identities=33% Similarity=0.226 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|.+++++|+.++.+|..+...++.++..+
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554443
No 445
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=61.29 E-value=1e+02 Score=31.07 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCILEPGRPARTDKPAIL-----------DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~~K~DKasIL-----------~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
..|.....+...|. .|++-.+.+ .|+=.-|+.++-+++.|..........-++|.+|..|+.|..
T Consensus 209 dtN~q~~s~~eel~----~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDky 284 (596)
T KOG4360|consen 209 DTNTQARSGQEELQ----SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKY 284 (596)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45666666666662 255555433 333333333333444444333333444577888889998888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028060 143 LILKADKEKLEQQLKVM 159 (214)
Q Consensus 143 ~~Lk~e~e~L~~qlk~~ 159 (214)
+.+-+..+.-+.+||.+
T Consensus 285 AE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 285 AECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888888888888875
No 446
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.26 E-value=43 Score=26.61 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
+.+..|.++++-++.....|..+.+.|.....+
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e 103 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLREKLKE 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333333333333
No 447
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=61.21 E-value=97 Score=29.54 Aligned_cols=81 Identities=23% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 028060 73 ERLNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA-----EKNELREEKLILK 146 (214)
Q Consensus 73 dkLN~~F~~LrslLP-P~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~-----eknELr~Ek~~Lk 146 (214)
+.+..+|.+|...+- |.-....+|+.-+.+-+..++.+-....+++...+.+.+-.+-++. -+.++.+|...|.
T Consensus 26 ~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~e~~~~a~~e~~~l~ 105 (364)
T TIGR00020 26 EKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELKALE 105 (364)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 345566777776661 2111234444444444444444444444443333332221111111 1234456666677
Q ss_pred HHHHHHH
Q 028060 147 ADKEKLE 153 (214)
Q Consensus 147 ~e~e~L~ 153 (214)
.++++|+
T Consensus 106 ~~l~~le 112 (364)
T TIGR00020 106 KKLAELE 112 (364)
T ss_pred HHHHHHH
Confidence 7777766
No 448
>PRK00736 hypothetical protein; Provisional
Probab=61.00 E-value=61 Score=23.47 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
..|.+|+.++.-++...+.|...+-.-..++..|+.+...|...+..++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788888888888888888877777777778887777777665555443
No 449
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=60.99 E-value=72 Score=26.04 Aligned_cols=6 Identities=0% Similarity=0.357 Sum_probs=2.2
Q ss_pred HHHHHH
Q 028060 146 KADKEK 151 (214)
Q Consensus 146 k~e~e~ 151 (214)
+.|.+.
T Consensus 83 q~EldD 88 (136)
T PF04871_consen 83 QSELDD 88 (136)
T ss_pred hhhHHH
Confidence 333333
No 450
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.89 E-value=68 Score=28.83 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.+|.+.+.+...++-.+.++..+++|++.++.++..
T Consensus 160 ~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~ 195 (243)
T cd07666 160 QIQAELDSKVEALANKKADRDLLKEEIEKLEDKVEC 195 (243)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555566655555443
No 451
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=60.88 E-value=1.6e+02 Score=28.15 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 136 NELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 136 nELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
.++.+|...|..++++++.+|+.+-
T Consensus 78 ~~a~~e~~~l~~~~~~~e~~l~~~l 102 (360)
T TIGR00019 78 EMAKEELEELEEKIEELEEQLKVLL 102 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556777888899999998887753
No 452
>PRK01156 chromosome segregation protein; Provisional
Probab=60.74 E-value=65 Score=33.10 Aligned_cols=25 Identities=20% Similarity=0.013 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 130 SLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 130 eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
.+..++.++..+...++.+++.|+.
T Consensus 215 ~l~~~i~~~~~el~~~~~~l~~l~~ 239 (895)
T PRK01156 215 ITLKEIERLSIEYNNAMDDYNNLKS 239 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444433
No 453
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=60.74 E-value=31 Score=30.43 Aligned_cols=50 Identities=32% Similarity=0.366 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
-|.+|++-..+|+.++..++.++..|+++..+|+. |-++...|-.-|++|
T Consensus 119 AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l 168 (200)
T PF07412_consen 119 ALEEALEENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERL 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 46677777777777777666666666665544443 333333444444444
No 454
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=60.59 E-value=21 Score=32.90 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
...+|+++.+.|+.+..+|..+...|+.....+.|++-.-
T Consensus 228 risrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 228 RISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666667777777776666666666543
No 455
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.56 E-value=60 Score=28.48 Aligned_cols=26 Identities=42% Similarity=0.501 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.+++|++|.+|+.+..+.++....+|
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666555554
No 456
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=60.48 E-value=48 Score=27.10 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 135 KNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.+|..|...|+.|..+|..+|+
T Consensus 98 i~~L~nE~n~L~eEN~~L~eElk 120 (120)
T PF10482_consen 98 IFELTNEMNTLKEENKKLKEELK 120 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhC
Confidence 34566666677777777766653
No 457
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=60.38 E-value=91 Score=27.27 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei 128 (214)
.....++.++...++.|......|...+
T Consensus 81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i 108 (247)
T PF06705_consen 81 NQISEKQEQLQSRLDSLNDRIEALEEEI 108 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 458
>PF13514 AAA_27: AAA domain
Probab=60.35 E-value=70 Score=34.09 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=44.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKE---TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~---~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
..+...|..++.-+++++.++..... ....+..+..++..++.+++.+...++.+..+|+.
T Consensus 146 rg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler 209 (1111)
T PF13514_consen 146 RGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLER 209 (1111)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666899999999999998888774 44566666677777777777777777666666553
No 459
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=60.23 E-value=44 Score=25.59 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
+.|..++..|+...+.|+.++..+..+.++++..
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555565555555555555543
No 460
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=60.22 E-value=34 Score=26.04 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
+.+.++-++.....|++.++.+..++.+++++...+...++++.+
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555566666666666666666666666666666666655554
No 461
>PLN02320 seryl-tRNA synthetase
Probab=60.09 E-value=62 Score=32.16 Aligned_cols=31 Identities=29% Similarity=0.221 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.|.++.++|+.++.+|.++...++.++..+-
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554444433
No 462
>PF15058 Speriolin_N: Speriolin N terminus
Probab=60.08 E-value=43 Score=29.56 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEI 128 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei 128 (214)
|+.++++|-.||++|+..+
T Consensus 10 lrhqierLv~ENeeLKKlV 28 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLV 28 (200)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 5666666666666665444
No 463
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.05 E-value=75 Score=24.23 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+-.....-+..|+...+.+..+++.+..++.++..+...++.++..+
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666666666666666665555554
No 464
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.00 E-value=42 Score=25.39 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
....+..++..|+....+|.+++..|+.+++
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777788877778887777766553
No 465
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=59.87 E-value=98 Score=25.49 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 64 KACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIR----VLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 64 H~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~----yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
....|=+|=..|+++|..=.....| +.++|..-|. .|+..+..+++|+.+...-..+|..|+.++.++.
T Consensus 49 ~vVsEL~~Ls~LK~~y~~~~~~~~~-------~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 49 AVVSELRRLSELKRRYRKKQSDPSP-------QVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCc-------cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777654333322 2233333332 4444444555555555555555666666655555
Q ss_pred HHHHHH
Q 028060 140 EEKLIL 145 (214)
Q Consensus 140 ~Ek~~L 145 (214)
..|..|
T Consensus 122 ~~n~~L 127 (131)
T PF04859_consen 122 RANKSL 127 (131)
T ss_pred HHHHHh
Confidence 555444
No 466
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=59.78 E-value=1e+02 Score=26.60 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
||..=-+=|+.|+.+....+.....+...+++...++..++++...|+
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555555555555554443
No 467
>PRK10865 protein disaggregation chaperone; Provisional
Probab=59.60 E-value=1.2e+02 Score=31.65 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKE 119 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~ 119 (214)
+|-.+|.+.-+.|..|+.+.+.++.
T Consensus 407 ~kp~~L~rLer~l~~L~~E~e~l~~ 431 (857)
T PRK10865 407 SKPEELDRLDRRIIQLKLEQQALMK 431 (857)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666666555544
No 468
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=59.59 E-value=86 Score=25.48 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+..|++-|..|+.++..++... ..+|..++.. +..+...|+.+++.|+..|+..
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~---~~~I~~i~~~---~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEA---NDEIARIKEW---YEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666666533 4444444333 3455678888888888888874
No 469
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=59.19 E-value=55 Score=31.31 Aligned_cols=30 Identities=40% Similarity=0.418 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|.+++++|+.++.+|..+...++.++..+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444443
No 470
>PRK14161 heat shock protein GrpE; Provisional
Probab=59.19 E-value=49 Score=28.33 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
..|..=+-+-+..++.+++.|+++.+.++.+...+.++..-+
T Consensus 11 ~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~ 52 (178)
T PRK14161 11 QTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNT 52 (178)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443444444455555555555555555444444444443
No 471
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=59.07 E-value=66 Score=33.80 Aligned_cols=55 Identities=15% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.|..+..-..+-.++.+.|.++.+.+...+.++..++..|+..+..|.+|++.|.
T Consensus 203 rlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 203 RLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444443333333444445555555555555555555555555555555555444
No 472
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=59.05 E-value=49 Score=32.56 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 67 REKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDA-------------------IRVLNQLRTESQELKETNEKLQEE 127 (214)
Q Consensus 67 ~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dA-------------------I~yIk~Lr~~vq~L~~~n~~L~~e 127 (214)
-|.+=...||+-+...+.++ -|....+.=+.+|++. -++|+.|..++..+.+.++.++
T Consensus 373 De~KL~~al~~~p~~v~~~F-~gd~~~~Gia~~l~~~l~s~~~~t~g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~~e-- 449 (483)
T COG1345 373 DEAKLKAALNEDPDSVREFF-GGDGKDTGIAKTLGEGLNSLLAVTGGIITGRTDSLNKQIKSLDKDIKSLDKRLEAAE-- 449 (483)
T ss_pred CHHHHHHHHHhChHHHHHHh-cCCccccchHHHHhhhhHHHHhhccceeeccccchhHHHHHHHHHHHHHHHHHHHHH--
Confidence 35555566777777777766 3311122222222222 2455556666666655555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 128 IKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+.++.+.+.|.+-...++.+.+.|.||+..++
T Consensus 450 -~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~~~ 481 (483)
T COG1345 450 -ERYKTQFNTLDDMMTQMNSQSSYLTQQLVSVS 481 (483)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45688889999989999999999999988763
No 473
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.04 E-value=1.1e+02 Score=32.84 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 111 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 111 r~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|..+..|++....++.+|+.|.....+|..|++.|+.-+..++.+++
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~k 137 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKK 137 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555544444444443
No 474
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.78 E-value=74 Score=29.76 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+..++-.-++.|..++.++.+...+-+. +|-.++++|......|...+++++.++..
T Consensus 130 ~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~ 186 (300)
T KOG2629|consen 130 QFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINT 186 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445666677777777666655443332 55556666655555666666666666655
No 475
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=58.78 E-value=1e+02 Score=30.61 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=33.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH----------HHHHHH--------------HHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKE-----------TNEKLQEEIKS----------LKAEKN--------------ELR 139 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~-----------~n~~L~~ei~e----------L~~ekn--------------ELr 139 (214)
.||++=+--.+||+.|-.++..|+. +|..|+.+++. |-..+. ...
T Consensus 375 akAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~e 454 (488)
T PF06548_consen 375 AKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAE 454 (488)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444555446777777776665553 56655544322 111111 245
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 140 EEKLILKADKEKLEQ 154 (214)
Q Consensus 140 ~Ek~~Lk~e~e~L~~ 154 (214)
+|+..++.++++|..
T Consensus 455 qe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 455 QENEKAKKQIEKLKR 469 (488)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777777754
No 476
>PF14645 Chibby: Chibby family
Probab=58.56 E-value=50 Score=26.44 Aligned_cols=47 Identities=30% Similarity=0.302 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
...+.+.+++++.+|++|...|+-+..=|-|=.+...+|..-++.+|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777777777777777777777766666665556666555554
No 477
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=58.40 E-value=30 Score=24.57 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 132 KAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 132 ~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
..+..+++.....|++||.|||.
T Consensus 30 L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 30 LAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HccchHHHHHHHHHHHHHHHHhc
Confidence 34445566666677777777763
No 478
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=58.30 E-value=54 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 128 IKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+..|..+..++..+...+..++..++.++
T Consensus 96 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 96 LETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444333
No 479
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=58.19 E-value=84 Score=28.49 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
..++++..|..+.++|.++...|++++..-+.||+.|+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555555555555555555555554
No 480
>smart00340 HALZ homeobox associated leucin zipper.
Probab=57.97 E-value=25 Score=24.04 Aligned_cols=26 Identities=42% Similarity=0.498 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 115 QELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 115 q~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+-|+...+.|.++.+.|..|+.|||.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666664
No 481
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=57.90 E-value=16 Score=30.40 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNE------------LREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknE------------Lr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+...+..+|+.|+.+|+.|.+. |+-+..++..|++++.+++..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555553 333444555555555544443
No 482
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=57.89 E-value=68 Score=23.06 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETN 121 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n 121 (214)
+.+...+..+|+.++.....+.
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eL 42 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEEL 42 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544443
No 483
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=57.81 E-value=1.3e+02 Score=28.69 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 137 ELREEKLILKADKEKLE 153 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~ 153 (214)
++..|...|+.++++|+
T Consensus 96 ~a~~e~~~l~~~l~~le 112 (367)
T PRK00578 96 EAEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666666665
No 484
>PF10549 ORF11CD3: ORF11CD3 domain; InterPro: IPR018877 This entry represents the carboxy-terminal domain from ORF11 (Q9XJS9 from SWISSPROT), one of the proteins of Pseudomonas phage D3 (Bacteriophage D3). The function of these proteins are unknown [].
Probab=57.62 E-value=67 Score=22.90 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
--+.+|+++..|..|.+.++.|++|++
T Consensus 25 ~GrgL~~Wk~~Kp~l~~ki~~l~~~~Q 51 (57)
T PF10549_consen 25 CGRGLNRWKWKKPQLEQKIEELEEQLQ 51 (57)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 456788999999999999999999887
No 485
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.62 E-value=65 Score=29.91 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+-.|.|. |-+|++.+.+++.++.....+.+.+|.....|+.|...|+.++.....-++.
T Consensus 114 vd~Lkd~---lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 114 VDLLKDK---LEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345544 4456666667776666556666667777777888888888888777776654
No 486
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=57.62 E-value=97 Score=30.65 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhc
Q 028060 96 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI-----------LKADKEKLEQQLKVMA 160 (214)
Q Consensus 96 KasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~-----------Lk~e~e~L~~qlk~~~ 160 (214)
+.+.+...+.++.+++.+.+.+..+...++.+...+..+..+++.+... |..-.++|..|++.++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 44 ELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=57.53 E-value=1.2e+02 Score=26.09 Aligned_cols=58 Identities=26% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKL-------QEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L-------~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.++..+...+...+.+++...+.| .+++..++.++.++.......+.+-+.+...++.
T Consensus 111 ~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~ 175 (216)
T cd07627 111 QKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKS 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.44 E-value=69 Score=32.48 Aligned_cols=55 Identities=31% Similarity=0.502 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNE----------------------------LREEKLILKADKEKLEQQL 156 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknE----------------------------Lr~Ek~~Lk~e~e~L~~ql 156 (214)
+.+..|+.++..|+.++..|+.++..|..++.. -+.+...|++|+++|..++
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHh
Q 028060 157 KVM 159 (214)
Q Consensus 157 k~~ 159 (214)
+.+
T Consensus 583 ~~l 585 (722)
T PF05557_consen 583 RSL 585 (722)
T ss_dssp HHH
T ss_pred Hhc
No 489
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=57.35 E-value=82 Score=25.91 Aligned_cols=58 Identities=17% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+| +++.-|+.|+..+..| ..++|++-.+.|..-++|-+++-...+.+....+.-+..+
T Consensus 4 ~l-k~l~n~R~lra~~re~--~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i 61 (134)
T PRK10328 4 ML-QSLNNIRTLRAMAREF--SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTW 61 (134)
T ss_pred HH-HHHhhHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.31 E-value=1.5e+02 Score=29.69 Aligned_cols=86 Identities=15% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHhhhcCCCCCCCCChhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 68 EKLRRERLNDRFL-DLSCILEPGRPARTDKPAILDDAIRVLNQ---LRTESQELKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 68 ERkRRdkLN~~F~-~LrslLPP~~~~K~DKasIL~dAI~yIk~---Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
|.-|-+.|...|. .+..++ ..|.-.-++|+.|..+ |..+....+++++.+.++++++...++.|+||+.
T Consensus 407 ~esRE~LIk~~Y~~RI~eLt-------~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 407 EESREQLIKSYYMSRIEELT-------SQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHhc
Q 028060 144 ILK----ADKEKLEQQLKVMA 160 (214)
Q Consensus 144 ~Lk----~e~e~L~~qlk~~~ 160 (214)
..+ .|+.-|-..|-+||
T Consensus 480 TTr~NYE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMN 500 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
No 491
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=57.28 E-value=36 Score=21.81 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
.+.++|-.+.+.|+...+.|+..+..||
T Consensus 1 adEqkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 1 ADEQKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.07 E-value=1.5e+02 Score=28.92 Aligned_cols=86 Identities=28% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHH
Q 028060 73 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKE-TNEKLQEEIKSLKAE-KNELREEK-LILKADK 149 (214)
Q Consensus 73 dkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~-~n~~L~~ei~eL~~e-knELr~Ek-~~Lk~e~ 149 (214)
..|...|..|-..+.-+.....+..+++..+..-|.+|..++..|+. ....++..+++-..+ ...++.+. ..++...
T Consensus 226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~ 305 (582)
T PF09731_consen 226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKR 305 (582)
T ss_pred HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 028060 150 EKLEQQLKV 158 (214)
Q Consensus 150 e~L~~qlk~ 158 (214)
.++..+++.
T Consensus 306 ~~~~~~~~~ 314 (582)
T PF09731_consen 306 AELEEELRE 314 (582)
T ss_pred HHHHHHHHH
No 493
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=57.03 E-value=28 Score=27.23 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 119 ETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 119 ~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
.....++.++++|++++.+|+.|+.-||.-.+
T Consensus 71 ~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 71 SELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=56.99 E-value=1e+02 Score=24.75 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+++-.-+-..+..|...++.+-..-..|..+.++|......|+.+...+....+.+..-||.+
T Consensus 25 ~s~~~l~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEi 87 (121)
T PF06320_consen 25 ASAQALTNALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEI 87 (121)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 495
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=56.97 E-value=1.2e+02 Score=25.63 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.++.+=+..=.+|...+..| .+...++.+|..|+.+..+|......+-.++...+..|..+
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.96 E-value=73 Score=29.09 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHh
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK-----------ADKEKLEQQLKVM 159 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk-----------~e~e~L~~qlk~~ 159 (214)
.+|++-.++.+.....|+.++++|.+++...++|...|. -+|..|..||+.+
T Consensus 70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l 132 (258)
T PF15397_consen 70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL 132 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
No 497
>PRK11020 hypothetical protein; Provisional
Probab=56.95 E-value=72 Score=26.03 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKA-----EKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~-----eknELr~Ek~~Lk~e~e~L~~q 155 (214)
|+.++++|....+.++.+...+.. -+.++.+|+..|..+|++|..+
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.88 E-value=1.6e+02 Score=29.73 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 69 KLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKET-NEKLQEEIKSLKAEKNELREEKLILKA 147 (214)
Q Consensus 69 RkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~-n~~L~~ei~eL~~eknELr~Ek~~Lk~ 147 (214)
|.+...+...+.+|+...-+.. --|..|+.+++.|+.+ ..++..-+..+..+...++.....|+.
T Consensus 294 ~~~l~~l~~~~~~l~~~y~~~h--------------P~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~ 359 (754)
T TIGR01005 294 RERQAELRATIADLSTTMLANH--------------PRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVS 359 (754)
T ss_pred HHHHHHHHHHHHHHHHhhCCCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhc
Q 028060 148 DKEKLEQQLKVMA 160 (214)
Q Consensus 148 e~e~L~~qlk~~~ 160 (214)
++..+++++..++
T Consensus 360 ~l~~~~~~~~~~~ 372 (754)
T TIGR01005 360 DVNQLKAASAQAG 372 (754)
T ss_pred HHHHHHHHHHhCc
No 499
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=56.83 E-value=80 Score=24.16 Aligned_cols=58 Identities=28% Similarity=0.287 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+.++-|...++.++++-.+.+..-.....+..++..|..-.++|..=...|.....+|
T Consensus 42 ~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 42 DIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 500
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=56.75 E-value=50 Score=27.58 Aligned_cols=41 Identities=32% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 147 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~ 147 (214)
+.+|-.+.+.++++.+.|+.++..|...++|++.-+..|+.
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!