Query 028060
Match_columns 214
No_of_seqs 208 out of 677
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkp_B MAX protein, MYC proto- 99.8 4.6E-19 1.6E-23 131.1 7.6 77 60-136 2-78 (83)
2 1am9_A Srebp-1A, protein (ster 99.8 1.1E-18 3.6E-23 129.7 8.3 72 60-132 6-77 (82)
3 1nkp_A C-MYC, MYC proto-oncoge 99.7 2.5E-18 8.5E-23 129.5 8.0 79 60-138 6-85 (88)
4 1nlw_A MAD protein, MAX dimeri 99.7 5.7E-18 1.9E-22 125.8 9.3 77 61-137 2-79 (80)
5 1hlo_A Protein (transcription 99.7 2.8E-17 9.6E-22 121.0 6.1 68 60-127 12-79 (80)
6 4ati_A MITF, microphthalmia-as 99.7 8.5E-17 2.9E-21 127.0 7.9 61 60-120 27-89 (118)
7 1an4_A Protein (upstream stimu 99.6 3.4E-16 1.1E-20 110.9 3.5 57 59-115 4-64 (65)
8 4h10_B Circadian locomoter out 99.6 7.7E-16 2.6E-20 112.4 4.6 58 60-118 8-65 (71)
9 1a0a_A BHLH, protein (phosphat 99.6 1E-15 3.5E-20 109.0 2.6 55 60-114 2-61 (63)
10 3u5v_A Protein MAX, transcript 99.5 9.5E-15 3.3E-19 107.6 3.6 60 59-118 4-65 (76)
11 4h10_A ARYL hydrocarbon recept 99.5 8.7E-15 3E-19 107.1 1.3 53 60-112 9-63 (73)
12 1mdy_A Protein (MYOD BHLH doma 99.3 4.7E-13 1.6E-17 96.7 2.2 57 58-114 10-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 1.3E-11 4.5E-16 87.0 4.6 55 60-114 2-57 (60)
14 4f3l_A Mclock, circadian locom 99.1 7.8E-11 2.7E-15 105.0 5.8 53 60-113 12-64 (361)
15 4ath_A MITF, microphthalmia-as 99.1 1.4E-09 4.8E-14 81.6 11.2 51 72-122 4-56 (83)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.3E-09 4.3E-14 98.5 3.9 53 61-113 14-68 (387)
17 2lfh_A DNA-binding protein inh 98.7 6E-09 2.1E-13 75.5 2.5 49 64-112 18-67 (68)
18 4aya_A DNA-binding protein inh 97.9 3.3E-05 1.1E-09 59.3 6.7 51 66-116 31-82 (97)
19 2jee_A YIIU; FTSZ, septum, coi 97.6 0.00072 2.5E-08 50.3 10.0 60 100-159 15-74 (81)
20 2jee_A YIIU; FTSZ, septum, coi 96.9 0.0069 2.3E-07 45.0 9.2 55 105-159 6-67 (81)
21 2wt7_A Proto-oncogene protein 96.5 0.02 6.7E-07 39.9 8.6 58 68-140 1-58 (63)
22 3hnw_A Uncharacterized protein 96.5 0.029 9.9E-07 44.9 10.6 81 73-156 35-133 (138)
23 1gd2_E Transcription factor PA 96.2 0.0081 2.8E-07 43.3 5.4 42 104-145 28-69 (70)
24 2yy0_A C-MYC-binding protein; 95.8 0.013 4.4E-07 40.1 4.7 39 102-140 2-47 (53)
25 3hnw_A Uncharacterized protein 95.7 0.058 2E-06 43.2 8.8 45 106-150 90-134 (138)
26 1t2k_D Cyclic-AMP-dependent tr 95.5 0.039 1.3E-06 38.0 6.1 35 105-139 22-56 (61)
27 3s9g_A Protein hexim1; cyclin 95.4 0.14 4.9E-06 39.4 9.5 63 93-159 29-91 (104)
28 3a7p_A Autophagy protein 16; c 95.2 0.16 5.4E-06 41.7 10.0 91 66-158 30-121 (152)
29 1go4_E MAD1 (mitotic arrest de 95.2 0.1 3.4E-06 40.1 8.2 55 105-159 12-94 (100)
30 3nmd_A CGMP dependent protein 94.8 0.1 3.5E-06 37.9 7.0 49 106-154 20-68 (72)
31 1jnm_A Proto-oncogene C-JUN; B 94.6 0.041 1.4E-06 38.1 4.4 34 105-138 22-55 (62)
32 1ci6_A Transcription factor AT 94.1 0.13 4.6E-06 35.8 6.1 29 107-135 25-53 (63)
33 2oqq_A Transcription factor HY 94.1 0.16 5.4E-06 33.4 6.0 36 105-140 3-38 (42)
34 1gu4_A CAAT/enhancer binding p 93.9 0.51 1.7E-05 34.5 9.1 55 105-159 15-69 (78)
35 3cve_A Homer protein homolog 1 93.9 0.31 1.1E-05 35.3 7.9 50 108-157 3-52 (72)
36 3s4r_A Vimentin; alpha-helix, 93.7 0.79 2.7E-05 34.2 10.0 54 105-158 23-88 (93)
37 3qh9_A Liprin-beta-2; coiled-c 93.5 0.63 2.2E-05 34.5 9.0 57 102-158 23-79 (81)
38 1hjb_A Ccaat/enhancer binding 93.4 0.66 2.3E-05 34.5 9.2 54 105-158 15-68 (87)
39 1dh3_A Transcription factor CR 93.4 0.064 2.2E-06 36.6 3.3 30 105-134 22-51 (55)
40 3oja_B Anopheles plasmodium-re 93.3 0.44 1.5E-05 44.0 9.9 34 126-159 544-577 (597)
41 1t2k_D Cyclic-AMP-dependent tr 92.9 0.46 1.6E-05 32.5 7.1 37 120-156 23-59 (61)
42 2dgc_A Protein (GCN4); basic d 92.5 0.16 5.4E-06 35.6 4.4 31 126-156 30-60 (63)
43 3cvf_A Homer-3, homer protein 92.3 0.55 1.9E-05 34.6 7.2 48 110-157 11-58 (79)
44 1ci6_A Transcription factor AT 92.1 1.1 3.8E-05 31.1 8.3 43 104-146 15-57 (63)
45 3he5_B Synzip2; heterodimeric 92.0 0.53 1.8E-05 31.4 6.2 41 109-149 7-47 (52)
46 3he5_A Synzip1; heterodimeric 91.8 0.9 3.1E-05 30.0 7.0 44 105-148 3-46 (49)
47 3i00_A HIP-I, huntingtin-inter 91.8 2.2 7.6E-05 33.3 10.7 67 93-159 10-80 (120)
48 3efg_A Protein SLYX homolog; x 91.8 0.59 2E-05 34.0 6.9 52 109-160 11-62 (78)
49 3q8t_A Beclin-1; autophagy, AT 91.8 1 3.4E-05 33.8 8.3 45 108-152 7-51 (96)
50 2wt7_B Transcription factor MA 91.7 1.4 4.9E-05 33.0 9.1 40 120-159 49-88 (90)
51 2wt7_A Proto-oncogene protein 91.5 0.96 3.3E-05 31.2 7.4 36 121-156 25-60 (63)
52 3i00_A HIP-I, huntingtin-inter 91.3 0.98 3.4E-05 35.4 8.2 49 97-145 32-80 (120)
53 2v66_B Nuclear distribution pr 91.3 1.3 4.6E-05 34.4 8.8 32 107-138 37-68 (111)
54 2fxo_A Myosin heavy chain, car 91.3 2.2 7.6E-05 33.1 10.2 62 98-159 62-123 (129)
55 3m91_A Proteasome-associated A 91.2 1 3.5E-05 30.5 7.1 39 107-152 11-49 (51)
56 4etp_A Kinesin-like protein KA 91.2 0.62 2.1E-05 42.7 8.1 53 107-159 5-57 (403)
57 2v4h_A NF-kappa-B essential mo 91.2 2.1 7.1E-05 33.4 9.8 16 144-159 87-102 (110)
58 3m9b_A Proteasome-associated A 90.9 0.27 9.4E-06 43.2 5.0 38 117-154 59-96 (251)
59 1hjb_A Ccaat/enhancer binding 90.8 0.47 1.6E-05 35.4 5.6 33 108-140 39-71 (87)
60 3oja_B Anopheles plasmodium-re 90.8 5.4 0.00019 36.7 14.0 46 113-158 538-583 (597)
61 2eqb_B RAB guanine nucleotide 90.7 2.5 8.7E-05 32.1 9.7 52 103-154 10-61 (97)
62 1jnm_A Proto-oncogene C-JUN; B 90.7 0.39 1.3E-05 33.0 4.8 30 128-157 24-53 (62)
63 2v71_A Nuclear distribution pr 90.6 2.1 7.1E-05 36.0 10.0 20 106-125 57-76 (189)
64 1gd2_E Transcription factor PA 90.5 0.63 2.1E-05 33.4 5.8 39 120-158 30-68 (70)
65 2eqb_B RAB guanine nucleotide 90.4 1.6 5.5E-05 33.2 8.3 53 108-160 8-60 (97)
66 3s9g_A Protein hexim1; cyclin 90.1 1.5 5.1E-05 33.7 7.9 50 106-155 45-94 (104)
67 3m9b_A Proteasome-associated A 90.1 0.31 1.1E-05 42.8 4.7 44 121-164 56-99 (251)
68 3o0z_A RHO-associated protein 90.0 2.5 8.5E-05 35.1 9.9 75 72-153 64-138 (168)
69 2dfs_A Myosin-5A; myosin-V, in 89.9 0.89 3.1E-05 46.7 8.6 16 138-153 1028-1043(1080)
70 4h22_A Leucine-rich repeat fli 89.9 2 6.9E-05 33.0 8.6 53 107-159 32-84 (103)
71 2w6a_A ARF GTPase-activating p 89.5 0.67 2.3E-05 32.6 5.1 36 111-146 26-61 (63)
72 3m91_A Proteasome-associated A 89.2 1.5 5.3E-05 29.6 6.6 37 123-159 13-49 (51)
73 3s4r_A Vimentin; alpha-helix, 89.0 2.1 7.2E-05 31.8 8.0 18 114-131 25-42 (93)
74 1gu4_A CAAT/enhancer binding p 88.9 1.2 4E-05 32.5 6.3 34 106-139 37-70 (78)
75 1deb_A APC protein, adenomatou 88.9 2.7 9.3E-05 28.7 7.6 46 108-153 6-51 (54)
76 3swf_A CGMP-gated cation chann 88.9 1.6 5.6E-05 31.7 7.0 49 108-159 3-51 (74)
77 3htk_A Structural maintenance 88.7 3.9 0.00013 27.3 9.2 51 107-157 7-57 (60)
78 3swy_A Cyclic nucleotide-gated 88.7 2.1 7.2E-05 28.4 6.9 44 109-155 2-45 (46)
79 2fxo_A Myosin heavy chain, car 88.6 4.6 0.00016 31.3 10.0 55 105-159 62-116 (129)
80 3htk_A Structural maintenance 88.6 3.1 0.00011 27.7 8.0 51 102-152 9-59 (60)
81 1ik9_A DNA repair protein XRCC 88.4 3 0.0001 35.4 9.5 41 100-140 127-167 (213)
82 2dfs_A Myosin-5A; myosin-V, in 88.2 2.1 7.1E-05 44.0 9.9 22 138-159 1021-1042(1080)
83 3u06_A Protein claret segregat 88.2 1.9 6.6E-05 39.7 8.8 52 108-159 6-57 (412)
84 2yy0_A C-MYC-binding protein; 88.2 0.94 3.2E-05 30.7 5.1 29 128-156 21-49 (53)
85 1dip_A Delta-sleep-inducing pe 88.0 0.052 1.8E-06 39.8 -1.4 25 122-146 18-42 (78)
86 2dgc_A Protein (GCN4); basic d 87.6 0.76 2.6E-05 32.0 4.5 32 104-135 29-60 (63)
87 1nkp_B MAX protein, MYC proto- 87.5 1 3.5E-05 32.3 5.3 32 128-159 49-80 (83)
88 3mq7_A Bone marrow stromal ant 87.3 4 0.00014 32.2 8.8 34 121-154 73-106 (121)
89 1kd8_A GABH AIV, GCN4 acid bas 86.9 1.2 4E-05 28.3 4.5 26 108-133 4-29 (36)
90 1dh3_A Transcription factor CR 86.8 2.7 9.2E-05 28.4 6.8 32 125-156 21-52 (55)
91 1kd8_B GABH BLL, GCN4 acid bas 86.8 1.7 6E-05 27.5 5.3 26 107-132 3-28 (36)
92 3tnu_B Keratin, type II cytosk 86.8 6.8 0.00023 30.2 10.0 58 100-157 38-106 (129)
93 3a7p_A Autophagy protein 16; c 86.7 5.1 0.00017 32.7 9.5 79 75-154 44-131 (152)
94 4b4t_K 26S protease regulatory 86.6 1.2 4.2E-05 41.1 6.6 44 120-163 50-93 (428)
95 3ghg_A Fibrinogen alpha chain; 86.4 3.1 0.00011 40.1 9.3 51 99-149 103-154 (562)
96 1m1j_C Fibrinogen gamma chain; 86.4 5.4 0.00019 37.0 10.7 59 96-154 75-133 (409)
97 1go4_E MAD1 (mitotic arrest de 86.4 1.3 4.6E-05 33.8 5.6 37 126-162 12-48 (100)
98 2xdj_A Uncharacterized protein 86.4 5.7 0.0002 29.1 8.8 39 110-148 25-63 (83)
99 3ol1_A Vimentin; structural ge 85.9 5.9 0.0002 30.4 9.2 17 106-122 21-37 (119)
100 3m48_A General control protein 85.9 0.97 3.3E-05 28.2 3.7 15 109-123 4-18 (33)
101 2v71_A Nuclear distribution pr 85.8 3.9 0.00013 34.4 8.6 28 110-137 47-74 (189)
102 2wt7_B Transcription factor MA 85.8 3.5 0.00012 30.9 7.5 38 115-152 51-88 (90)
103 2ocy_A RAB guanine nucleotide 85.1 5.2 0.00018 32.6 8.8 23 100-122 8-30 (154)
104 3na7_A HP0958; flagellar bioge 85.0 4.8 0.00016 34.2 9.1 51 107-157 34-84 (256)
105 3oja_A Leucine-rich immune mol 85.0 18 0.00063 32.5 13.4 37 121-157 437-473 (487)
106 2oxj_A Hybrid alpha/beta pepti 84.4 2 6.9E-05 26.9 4.6 18 108-125 4-21 (34)
107 1zbt_A RF-1, peptide chain rel 84.3 3.9 0.00013 37.6 8.7 88 71-161 18-115 (371)
108 3v86_A De novo design helix; c 84.3 1 3.6E-05 26.4 3.1 25 106-130 1-25 (27)
109 3iv1_A Tumor susceptibility ge 84.2 10 0.00034 27.7 9.2 43 110-152 30-72 (78)
110 2oxj_A Hybrid alpha/beta pepti 84.2 2 6.8E-05 26.9 4.6 25 122-146 4-28 (34)
111 3gpv_A Transcriptional regulat 84.2 2.3 7.9E-05 33.4 6.2 41 122-162 98-138 (148)
112 3oja_A Leucine-rich immune mol 84.1 6.2 0.00021 35.7 9.9 47 113-159 422-468 (487)
113 2v66_B Nuclear distribution pr 83.9 11 0.00038 29.1 9.8 22 107-128 5-26 (111)
114 3mq7_A Bone marrow stromal ant 83.9 12 0.00041 29.4 10.0 34 125-158 70-103 (121)
115 1lwu_C Fibrinogen gamma chain; 83.9 2.8 9.7E-05 37.7 7.4 54 104-157 4-57 (323)
116 1wt6_A Myotonin-protein kinase 83.9 11 0.00037 27.8 9.4 42 110-158 29-70 (81)
117 1gk6_A Vimentin; intermediate 83.9 3 0.0001 28.5 5.9 50 107-156 2-51 (59)
118 3u1c_A Tropomyosin alpha-1 cha 83.3 12 0.00041 27.9 10.0 41 102-142 20-60 (101)
119 3nmd_A CGMP dependent protein 83.1 3.4 0.00012 29.9 6.2 44 114-157 21-64 (72)
120 2d4y_A HAP1, flagellar HOOK-as 83.1 5.4 0.00018 36.6 9.1 78 73-152 44-122 (463)
121 3u59_A Tropomyosin beta chain; 82.7 12 0.00043 27.6 9.8 43 102-144 20-62 (101)
122 2v4h_A NF-kappa-B essential mo 82.7 12 0.00041 29.0 9.5 22 137-158 87-108 (110)
123 3c3g_A Alpha/beta peptide with 82.6 2.5 8.7E-05 26.3 4.6 17 109-125 4-20 (33)
124 3na7_A HP0958; flagellar bioge 82.5 7.8 0.00027 32.9 9.4 15 141-155 98-112 (256)
125 1jcd_A Major outer membrane li 82.5 6.5 0.00022 26.6 7.0 35 107-141 6-40 (52)
126 3vmx_A Voltage-gated hydrogen 82.3 5 0.00017 26.9 6.3 40 112-158 4-43 (48)
127 3efg_A Protein SLYX homolog; x 82.1 5.2 0.00018 28.9 6.9 44 116-159 11-54 (78)
128 3tnu_A Keratin, type I cytoske 82.0 10 0.00035 29.3 9.1 56 101-156 41-107 (131)
129 2w83_C C-JUN-amino-terminal ki 81.9 9.5 0.00032 27.9 8.2 51 107-157 11-68 (77)
130 3m48_A General control protein 81.7 2.4 8.2E-05 26.4 4.2 24 131-154 5-28 (33)
131 3q8t_A Beclin-1; autophagy, AT 81.6 11 0.00037 28.1 8.8 27 105-131 25-51 (96)
132 1nkp_A C-MYC, MYC proto-oncoge 81.4 3.7 0.00013 30.1 6.0 32 121-152 54-85 (88)
133 2wq1_A General control protein 81.4 3 0.0001 26.0 4.6 20 124-143 5-24 (33)
134 3c3g_A Alpha/beta peptide with 81.3 3.1 0.00011 25.9 4.6 25 122-146 3-27 (33)
135 1uix_A RHO-associated kinase; 81.1 11 0.00039 27.0 8.3 47 110-156 2-48 (71)
136 3c3f_A Alpha/beta peptide with 80.9 3.2 0.00011 26.0 4.6 18 108-125 4-21 (34)
137 2zqm_A Prefoldin beta subunit 80.6 15 0.0005 27.0 10.6 40 122-161 73-112 (117)
138 1deq_A Fibrinogen (alpha chain 80.6 5.4 0.00018 37.0 8.0 43 106-149 114-157 (390)
139 1kd8_B GABH BLL, GCN4 acid bas 80.4 3.2 0.00011 26.3 4.6 25 122-146 4-28 (36)
140 3d5a_X RF1, peptide chain rele 80.3 15 0.00051 33.5 10.9 92 71-162 4-98 (354)
141 1ik9_A DNA repair protein XRCC 80.1 8.9 0.0003 32.4 8.8 49 105-153 125-173 (213)
142 2wq1_A General control protein 80.0 3.7 0.00013 25.5 4.6 26 107-132 2-27 (33)
143 2oqq_A Transcription factor HY 79.9 6.4 0.00022 25.7 6.0 37 121-157 5-41 (42)
144 1ic2_A Tropomyosin alpha chain 79.8 14 0.00048 26.3 10.0 54 103-156 18-71 (81)
145 2zvf_A Alanyl-tRNA synthetase; 79.3 2.9 0.0001 32.8 5.2 10 104-113 6-15 (171)
146 3c3f_A Alpha/beta peptide with 79.2 3.9 0.00013 25.6 4.6 25 122-146 4-28 (34)
147 3iv1_A Tumor susceptibility ge 79.0 16 0.00056 26.6 9.4 52 108-159 21-72 (78)
148 2ve7_C Kinetochore protein NUF 79.0 2.5 8.7E-05 36.4 5.1 58 98-159 124-181 (250)
149 4dzn_A Coiled-coil peptide CC- 79.0 4.5 0.00015 24.7 4.7 26 129-154 5-30 (33)
150 1uo4_A General control protein 78.9 2.8 9.6E-05 26.3 3.9 21 108-128 4-24 (34)
151 3vmx_A Voltage-gated hydrogen 78.8 10 0.00035 25.4 6.9 17 113-129 19-35 (48)
152 3ghg_A Fibrinogen alpha chain; 78.6 2.3 7.8E-05 41.1 5.0 30 123-152 114-143 (562)
153 1gk4_A Vimentin; intermediate 78.6 9.9 0.00034 27.4 7.5 45 107-151 28-72 (84)
154 1lwu_C Fibrinogen gamma chain; 78.5 5.2 0.00018 36.0 7.2 47 112-158 5-51 (323)
155 3he4_B Synzip5; heterodimeric 78.5 9.6 0.00033 24.7 6.5 36 107-142 5-40 (46)
156 3a2a_A Voltage-gated hydrogen 78.3 5 0.00017 27.8 5.3 42 111-159 10-51 (58)
157 2j5u_A MREC protein; bacterial 78.1 1.1 3.8E-05 38.6 2.6 37 118-158 25-61 (255)
158 1uii_A Geminin; human, DNA rep 78.1 11 0.00036 28.0 7.5 43 105-147 28-74 (83)
159 1uii_A Geminin; human, DNA rep 78.0 8.7 0.0003 28.4 7.0 32 100-131 41-72 (83)
160 2hy6_A General control protein 77.9 3 0.0001 26.1 3.8 21 108-128 4-24 (34)
161 2w83_C C-JUN-amino-terminal ki 77.9 18 0.00061 26.4 8.8 31 110-140 7-37 (77)
162 3ibp_A Chromosome partition pr 77.8 16 0.00056 32.7 10.1 76 67-154 21-104 (302)
163 3tnu_B Keratin, type II cytosk 77.7 3.5 0.00012 31.8 5.1 76 76-158 14-93 (129)
164 3bas_A Myosin heavy chain, str 77.6 18 0.00061 26.3 9.9 24 136-159 59-82 (89)
165 3q0x_A Centriole protein; cent 77.4 13 0.00046 31.9 9.1 63 94-156 160-222 (228)
166 3ni0_A Bone marrow stromal ant 77.4 21 0.00074 27.1 9.9 59 101-159 28-86 (99)
167 1fmh_A General control protein 77.2 5.7 0.0002 24.2 4.8 24 108-131 4-27 (33)
168 2zxx_A Geminin; coiled-coil, c 77.2 8.9 0.0003 28.1 6.8 31 119-149 34-64 (79)
169 2xv5_A Lamin-A/C; structural p 77.2 12 0.00041 26.8 7.5 50 107-156 7-56 (74)
170 3trt_A Vimentin; cytoskeleton, 77.2 11 0.00039 26.1 7.3 20 131-150 54-73 (77)
171 1nlw_A MAD protein, MAX dimeri 77.0 7.7 0.00026 27.9 6.5 17 131-147 59-75 (80)
172 2oto_A M protein; helical coil 76.9 13 0.00046 29.3 8.5 15 114-128 59-73 (155)
173 1i84_S Smooth muscle myosin he 76.8 8.4 0.00029 39.5 9.0 13 64-76 780-792 (1184)
174 1ic2_A Tropomyosin alpha chain 76.5 18 0.00061 25.7 8.3 21 137-157 45-65 (81)
175 2zxx_A Geminin; coiled-coil, c 76.4 12 0.00041 27.4 7.3 39 100-138 29-67 (79)
176 1wle_A Seryl-tRNA synthetase; 76.3 13 0.00044 35.1 9.5 52 107-158 79-148 (501)
177 2bni_A General control protein 75.9 3.7 0.00013 25.7 3.8 21 125-145 7-27 (34)
178 3bas_A Myosin heavy chain, str 75.9 14 0.00046 27.0 7.6 17 105-121 14-30 (89)
179 2wvr_A Geminin; DNA replicatio 75.7 9.2 0.00031 32.7 7.5 64 105-168 97-168 (209)
180 3w03_C DNA repair protein XRCC 75.6 6.5 0.00022 32.9 6.5 29 99-127 146-174 (184)
181 3tnu_A Keratin, type I cytoske 75.5 13 0.00045 28.7 7.9 37 113-149 85-121 (131)
182 1jcd_A Major outer membrane li 75.3 16 0.00055 24.6 7.9 46 112-157 4-49 (52)
183 1wlq_A Geminin; coiled-coil; 2 75.2 12 0.00042 27.6 7.2 42 105-146 20-65 (83)
184 3gp4_A Transcriptional regulat 74.8 23 0.00077 27.5 9.2 47 114-160 83-129 (142)
185 4h22_A Leucine-rich repeat fli 74.7 21 0.00073 27.3 8.6 49 111-159 29-77 (103)
186 1kd8_A GABH AIV, GCN4 acid bas 74.6 4.1 0.00014 25.8 3.8 24 123-146 5-28 (36)
187 1uo4_A General control protein 74.4 5.8 0.0002 24.8 4.4 25 122-146 4-28 (34)
188 3u1c_A Tropomyosin alpha-1 cha 74.2 24 0.00083 26.2 8.8 13 119-131 44-56 (101)
189 1x8y_A Lamin A/C; structural p 74.0 22 0.00076 25.7 8.8 47 107-153 30-76 (86)
190 3mq9_A Bone marrow stromal ant 73.5 26 0.00091 31.3 10.5 23 135-157 445-467 (471)
191 2w6a_A ARF GTPase-activating p 73.2 15 0.00051 25.8 6.8 39 117-155 18-56 (63)
192 1gk4_A Vimentin; intermediate 73.1 23 0.00079 25.4 8.8 30 128-157 28-57 (84)
193 2bni_A General control protein 72.9 4.6 0.00016 25.3 3.7 27 107-133 3-29 (34)
194 1wle_A Seryl-tRNA synthetase; 72.9 29 0.001 32.7 11.0 29 123-151 120-148 (501)
195 4dyl_A Tyrosine-protein kinase 72.8 34 0.0012 30.7 11.1 31 129-159 362-392 (406)
196 1zhc_A Hypothetical protein HP 72.8 6.7 0.00023 28.0 5.2 23 134-156 45-67 (76)
197 3k29_A Putative uncharacterize 72.7 35 0.0012 28.3 10.0 42 77-123 55-96 (169)
198 3u06_A Protein claret segregat 72.4 11 0.00038 34.6 7.8 54 106-159 11-64 (412)
199 3swk_A Vimentin; cytoskeleton, 72.3 23 0.00077 25.8 8.1 38 122-159 45-82 (86)
200 1wt6_A Myotonin-protein kinase 71.8 11 0.00039 27.7 6.2 34 108-141 41-74 (81)
201 3qne_A Seryl-tRNA synthetase, 71.6 37 0.0013 32.0 11.4 53 107-159 42-104 (485)
202 3vkg_A Dynein heavy chain, cyt 71.5 30 0.001 39.9 12.2 63 78-142 1999-2065(3245)
203 2zqm_A Prefoldin beta subunit 71.3 15 0.0005 27.0 7.0 49 95-143 60-108 (117)
204 1l8d_A DNA double-strand break 70.9 12 0.00042 27.4 6.5 37 124-160 8-44 (112)
205 2ve7_C Kinetochore protein NUF 70.5 2 7E-05 37.0 2.3 66 94-159 137-202 (250)
206 4etp_A Kinesin-like protein KA 70.4 16 0.00056 33.3 8.4 55 105-159 10-64 (403)
207 2hy6_A General control protein 70.4 8.2 0.00028 24.1 4.4 24 123-146 5-28 (34)
208 2lw1_A ABC transporter ATP-bin 70.0 17 0.00058 26.2 6.9 25 111-135 21-45 (89)
209 2j5u_A MREC protein; bacterial 69.8 2.1 7.2E-05 36.8 2.2 46 101-150 15-60 (255)
210 1wlq_A Geminin; coiled-coil; 2 69.8 23 0.00078 26.2 7.5 31 100-130 33-63 (83)
211 4emc_A Monopolin complex subun 69.6 8.5 0.00029 32.5 5.8 38 105-142 20-57 (190)
212 1s1c_X RHO-associated, coiled- 69.5 26 0.0009 25.1 7.6 31 109-139 3-33 (71)
213 1m1j_B Fibrinogen beta chain; 69.5 76 0.0026 29.9 12.9 17 102-118 118-134 (464)
214 4dzn_A Coiled-coil peptide CC- 69.5 11 0.00037 23.0 4.7 15 111-125 8-22 (33)
215 4emc_A Monopolin complex subun 69.5 21 0.00073 30.0 8.2 42 102-143 24-65 (190)
216 2dq0_A Seryl-tRNA synthetase; 69.5 46 0.0016 30.8 11.4 53 107-159 40-102 (455)
217 2dq0_A Seryl-tRNA synthetase; 69.4 26 0.00089 32.5 9.7 29 106-134 32-60 (455)
218 3u59_A Tropomyosin beta chain; 69.4 31 0.0011 25.4 8.8 19 117-135 42-60 (101)
219 1hs7_A Syntaxin VAM3; UP-and-D 69.2 6.4 0.00022 29.7 4.5 60 99-158 11-75 (97)
220 1gmj_A ATPase inhibitor; coile 68.9 24 0.00082 26.1 7.5 28 125-152 50-77 (84)
221 3oa7_A Head morphogenesis prot 68.8 19 0.00065 30.6 7.8 46 101-146 26-71 (206)
222 2wuj_A Septum site-determining 68.7 5.4 0.00019 27.0 3.7 24 105-128 27-50 (57)
223 3ghg_C Fibrinogen gamma chain; 68.5 56 0.0019 30.3 11.6 74 77-153 59-132 (411)
224 3qne_A Seryl-tRNA synthetase, 68.2 28 0.00095 32.9 9.7 29 123-151 75-103 (485)
225 1ses_A Seryl-tRNA synthetase; 68.2 61 0.0021 29.6 11.8 54 106-159 36-97 (421)
226 3jsv_C NF-kappa-B essential mo 68.0 24 0.00083 26.6 7.5 18 143-160 64-81 (94)
227 3cvf_A Homer-3, homer protein 67.6 11 0.00039 27.4 5.5 42 103-144 11-52 (79)
228 3a2a_A Voltage-gated hydrogen 67.4 17 0.00059 25.1 6.0 34 101-134 7-40 (58)
229 2r2v_A GCN4 leucine zipper; co 67.0 11 0.00039 23.5 4.6 22 124-145 6-27 (34)
230 1zme_C Proline utilization tra 66.8 3.9 0.00013 27.4 2.7 24 105-128 44-67 (70)
231 3jsv_C NF-kappa-B essential mo 66.6 24 0.0008 26.7 7.2 23 137-159 65-87 (94)
232 1fxk_C Protein (prefoldin); ar 66.6 29 0.001 26.2 8.0 39 100-141 86-124 (133)
233 3trt_A Vimentin; cytoskeleton, 66.4 23 0.00079 24.5 6.8 24 136-159 52-75 (77)
234 4b4t_K 26S protease regulatory 66.3 9.5 0.00032 35.1 6.0 45 102-153 46-90 (428)
235 1m1j_A Fibrinogen alpha subuni 65.9 32 0.0011 32.7 9.5 73 64-137 53-129 (491)
236 2r2v_A GCN4 leucine zipper; co 65.7 13 0.00045 23.2 4.6 26 107-132 3-28 (34)
237 1l8d_A DNA double-strand break 65.6 37 0.0013 24.8 9.9 19 108-126 67-85 (112)
238 1s94_A S-syntaxin; three helix 65.3 27 0.00091 27.7 7.9 12 74-85 6-17 (180)
239 3w03_C DNA repair protein XRCC 65.3 13 0.00046 31.0 6.2 47 94-140 133-180 (184)
240 3mq9_A Bone marrow stromal ant 65.2 40 0.0014 30.1 9.9 17 143-159 446-462 (471)
241 3a7o_A Autophagy protein 16; c 65.1 15 0.00051 26.6 5.5 53 106-158 19-71 (75)
242 3mov_A Lamin-B1; LMNB1, B-type 65.1 29 0.001 25.7 7.5 42 110-151 42-83 (95)
243 3rrk_A V-type ATPase 116 kDa s 64.8 51 0.0017 28.5 10.2 19 68-86 61-79 (357)
244 3a7o_A Autophagy protein 16; c 64.4 37 0.0013 24.5 8.1 44 105-148 32-75 (75)
245 1gqe_A Release factor 2, RF2; 64.3 26 0.00088 32.1 8.4 16 71-86 26-41 (365)
246 2wuj_A Septum site-determining 63.9 6.2 0.00021 26.7 3.3 17 137-153 38-54 (57)
247 1t3u_A Conserved hypothetical 63.7 40 0.0014 24.6 8.0 62 72-137 32-93 (104)
248 1ytz_T Troponin T; muscle, THI 63.5 47 0.0016 25.3 9.9 29 131-159 61-89 (107)
249 1p9i_A Cortexillin I/GCN4 hybr 63.1 7.6 0.00026 23.4 3.1 26 109-134 3-28 (31)
250 2e7s_A RAB guanine nucleotide 62.7 25 0.00085 28.1 7.0 14 141-154 68-81 (135)
251 1fxk_A Prefoldin; archaeal pro 62.7 22 0.00075 25.6 6.3 46 95-140 55-100 (107)
252 2wvr_A Geminin; DNA replicatio 62.7 33 0.0011 29.2 8.2 35 99-133 109-143 (209)
253 1deb_A APC protein, adenomatou 62.5 31 0.0011 23.4 6.4 34 122-155 6-39 (54)
254 2ve7_A Kinetochore protein HEC 62.4 13 0.00045 32.8 6.0 28 113-140 186-213 (315)
255 1joc_A EEA1, early endosomal a 62.0 51 0.0017 25.2 8.7 50 94-147 4-53 (125)
256 3qh9_A Liprin-beta-2; coiled-c 61.5 45 0.0016 24.5 8.5 43 116-158 23-65 (81)
257 3lay_A Zinc resistance-associa 61.3 45 0.0015 27.3 8.6 17 126-142 113-129 (175)
258 3vkg_A Dynein heavy chain, cyt 61.1 32 0.0011 39.6 9.9 33 121-153 2037-2069(3245)
259 1ses_A Seryl-tRNA synthetase; 60.7 32 0.0011 31.4 8.4 55 105-159 28-90 (421)
260 4e61_A Protein BIM1; EB1-like 60.6 22 0.00074 27.4 6.1 47 110-157 9-59 (106)
261 1j1d_B Troponin T, TNT; THIN f 60.6 48 0.0016 25.2 8.1 30 130-159 60-89 (106)
262 2lw1_A ABC transporter ATP-bin 60.5 39 0.0013 24.2 7.3 22 107-128 24-45 (89)
263 1fxk_C Protein (prefoldin); ar 60.4 30 0.001 26.1 7.0 31 108-138 4-34 (133)
264 3a5t_A Transcription factor MA 60.3 0.29 9.8E-06 37.9 -4.6 30 127-156 59-88 (107)
265 2p22_A Suppressor protein STP2 60.2 28 0.00094 28.8 7.1 38 116-153 53-90 (174)
266 3kin_B Kinesin heavy chain; mo 59.9 14 0.00047 28.3 4.9 25 114-138 91-115 (117)
267 1fmh_A General control protein 59.8 16 0.00054 22.3 4.1 24 131-154 6-29 (33)
268 4b4t_M 26S protease regulatory 59.5 10 0.00034 35.1 4.8 42 122-163 35-76 (434)
269 1a93_B MAX protein, coiled coi 59.2 18 0.0006 22.6 4.4 20 120-139 8-27 (34)
270 4dci_A Uncharacterized protein 58.1 72 0.0025 25.7 10.3 66 94-159 25-103 (150)
271 1x79_B RAB GTPase binding effe 57.6 63 0.0022 24.9 8.9 8 110-117 11-18 (112)
272 3rrk_A V-type ATPase 116 kDa s 57.2 25 0.00085 30.5 6.8 22 65-88 64-85 (357)
273 2zdi_C Prefoldin subunit alpha 56.9 27 0.00094 27.1 6.4 46 100-155 96-141 (151)
274 2zvf_A Alanyl-tRNA synthetase; 56.9 7.7 0.00026 30.4 3.2 11 76-86 13-23 (171)
275 1t6f_A Geminin; coiled-coil, c 56.7 32 0.0011 21.8 5.3 22 116-137 11-32 (37)
276 3onj_A T-snare VTI1; helix, HA 56.4 53 0.0018 24.0 7.5 23 96-118 32-54 (97)
277 4fla_A Regulation of nuclear P 56.3 73 0.0025 25.4 8.9 29 129-157 117-145 (152)
278 1vcs_A Vesicle transport throu 56.3 39 0.0013 25.0 6.8 28 94-121 34-61 (102)
279 3lay_A Zinc resistance-associa 56.3 72 0.0025 26.0 9.0 12 137-148 117-128 (175)
280 3l4q_C Phosphatidylinositol 3- 56.2 83 0.0028 25.8 9.7 66 94-159 89-157 (170)
281 2dnx_A Syntaxin-12; snare, HAB 56.2 56 0.0019 25.0 8.0 13 74-86 25-37 (130)
282 1zxa_A CGMP-dependent protein 55.8 18 0.00061 25.7 4.6 30 125-154 24-53 (67)
283 3oa7_A Head morphogenesis prot 55.8 35 0.0012 29.0 7.1 42 112-153 30-71 (206)
284 1ytz_T Troponin T; muscle, THI 55.5 39 0.0013 25.8 6.8 59 82-144 30-88 (107)
285 2xnx_M M protein, M1-BC1; cell 55.4 44 0.0015 27.0 7.4 7 103-109 22-28 (146)
286 3q4f_C DNA repair protein XRCC 55.2 17 0.00057 30.6 5.0 28 99-126 155-182 (186)
287 1t3j_A Mitofusin 1; coiled coi 54.9 62 0.0021 24.4 7.7 61 73-154 32-92 (96)
288 1j1e_C Troponin I, TNI; THIN f 54.7 92 0.0031 25.9 9.6 54 68-127 34-87 (180)
289 1lrz_A FEMA, factor essential 54.5 50 0.0017 29.5 8.5 47 105-151 247-299 (426)
290 3ol1_A Vimentin; structural ge 54.2 69 0.0024 24.3 10.0 19 79-100 22-40 (119)
291 3mud_A DNA repair protein XRCC 54.0 41 0.0014 27.9 7.1 23 100-122 130-152 (175)
292 3mtu_A Tropomyosin alpha-1 cha 53.9 55 0.0019 23.1 7.9 61 109-169 6-74 (75)
293 3lss_A Seryl-tRNA synthetase; 53.9 61 0.0021 30.5 9.2 28 132-159 109-137 (484)
294 2l5g_A GPS2 protein, G protein 53.7 24 0.00082 22.5 4.4 20 125-144 14-33 (38)
295 2p22_A Suppressor protein STP2 53.6 33 0.0011 28.3 6.6 44 116-159 46-92 (174)
296 2aze_B Transcription factor E2 53.3 33 0.0011 25.9 6.0 36 106-141 7-42 (106)
297 2dq3_A Seryl-tRNA synthetase; 53.2 31 0.0011 31.5 7.0 52 108-159 40-101 (425)
298 2wg5_A General control protein 53.2 16 0.00053 27.6 4.2 19 145-163 19-37 (109)
299 2wg5_A General control protein 52.8 15 0.00053 27.6 4.1 26 129-154 10-35 (109)
300 2aze_B Transcription factor E2 52.6 26 0.0009 26.5 5.4 27 132-158 12-38 (106)
301 3a5t_A Transcription factor MA 52.5 0.21 7.3E-06 38.6 -6.4 40 120-159 59-98 (107)
302 2dq3_A Seryl-tRNA synthetase; 52.4 32 0.0011 31.4 7.0 56 104-159 29-94 (425)
303 1fxk_A Prefoldin; archaeal pro 52.3 61 0.0021 23.1 9.9 34 124-157 70-103 (107)
304 1g6u_A Domain swapped dimer; d 52.1 46 0.0016 21.7 6.0 11 109-119 4-14 (48)
305 1fzc_C Fibrin; blood coagulati 52.0 7.5 0.00026 34.9 2.6 32 125-156 17-48 (319)
306 4e61_A Protein BIM1; EB1-like 51.9 68 0.0023 24.5 7.6 30 107-136 13-42 (106)
307 1deq_A Fibrinogen (alpha chain 51.4 42 0.0014 31.1 7.5 14 74-87 64-77 (390)
308 3swk_A Vimentin; cytoskeleton, 51.3 66 0.0023 23.2 9.0 31 107-137 2-32 (86)
309 1avy_A Fibritin, gpwac M; bact 50.1 69 0.0024 23.1 7.2 42 121-171 10-51 (74)
310 1a93_A Coiled coil, LZ, MYC pr 49.9 31 0.0011 21.4 4.4 27 110-136 5-31 (34)
311 2lf0_A Uncharacterized protein 49.8 40 0.0014 26.5 6.1 15 138-152 41-55 (123)
312 3viq_B Mating-type switching p 49.6 28 0.00094 25.8 4.9 29 108-136 4-32 (85)
313 4ani_A Protein GRPE; chaperone 49.5 40 0.0014 28.6 6.6 33 108-140 62-94 (213)
314 3plt_A Sphingolipid long chain 49.3 85 0.0029 27.1 8.7 50 107-156 99-154 (234)
315 4b4t_J 26S protease regulatory 48.9 20 0.00069 32.9 5.0 37 113-149 26-62 (405)
316 1lwu_B Fibrinogen beta chain; 48.7 32 0.0011 30.8 6.1 21 128-148 30-50 (323)
317 2pnv_A Small conductance calci 48.7 31 0.0011 22.4 4.5 32 103-134 7-38 (43)
318 3cve_A Homer protein homolog 1 48.7 71 0.0024 22.8 9.7 43 102-144 4-46 (72)
319 2c5k_T Syntaxin TLG1, T-snare 48.6 73 0.0025 23.4 7.2 53 105-157 36-92 (95)
320 3lss_A Seryl-tRNA synthetase; 48.5 1.2E+02 0.004 28.6 10.2 17 142-158 113-129 (484)
321 2aze_A Transcription factor DP 47.6 93 0.0032 25.3 8.2 42 112-153 5-46 (155)
322 2xv5_A Lamin-A/C; structural p 47.5 73 0.0025 22.6 8.3 49 110-158 3-51 (74)
323 2qyw_A Vesicle transport throu 47.4 63 0.0022 23.9 6.7 24 95-118 46-69 (102)
324 2no2_A HIP-I, huntingtin-inter 47.0 90 0.0031 23.5 9.9 19 100-118 24-42 (107)
325 1j1d_B Troponin T, TNT; THIN f 46.6 50 0.0017 25.1 6.1 42 104-145 48-89 (106)
326 2w6b_A RHO guanine nucleotide 46.4 68 0.0023 22.0 6.3 23 104-126 9-31 (56)
327 3azd_A Short alpha-tropomyosin 46.4 5.1 0.00017 25.1 0.4 27 106-132 5-31 (37)
328 3onj_A T-snare VTI1; helix, HA 46.0 84 0.0029 22.9 8.6 55 105-159 34-92 (97)
329 1m1j_B Fibrinogen beta chain; 45.4 88 0.003 29.4 8.8 22 137-158 172-193 (464)
330 3ra3_A P1C; coiled coil domain 44.5 11 0.00039 22.1 1.7 20 117-136 5-24 (28)
331 1dip_A Delta-sleep-inducing pe 44.4 15 0.0005 26.9 2.6 30 125-154 14-43 (78)
332 2ve7_A Kinetochore protein HEC 43.9 23 0.00078 31.3 4.4 27 119-145 185-211 (315)
333 3q4f_C DNA repair protein XRCC 43.9 48 0.0017 27.8 6.1 29 106-134 155-183 (186)
334 3l4q_C Phosphatidylinositol 3- 43.2 1.1E+02 0.0038 25.0 8.2 42 111-152 102-143 (170)
335 3ibp_A Chromosome partition pr 42.9 1.8E+02 0.0063 25.9 10.2 33 136-168 79-111 (302)
336 3nr7_A DNA-binding protein H-N 42.8 64 0.0022 23.6 6.0 39 102-142 9-47 (86)
337 2qyw_A Vesicle transport throu 42.7 60 0.002 24.0 6.0 51 106-156 50-101 (102)
338 1j1d_C Troponin I, TNI; THIN f 42.5 1.2E+02 0.0042 23.8 12.0 65 68-138 34-98 (133)
339 4b4t_J 26S protease regulatory 42.4 35 0.0012 31.3 5.5 44 120-163 26-69 (405)
340 1vcs_A Vesicle transport throu 42.3 27 0.00091 25.9 3.9 18 100-117 47-64 (102)
341 3sja_C Golgi to ER traffic pro 42.2 87 0.003 22.0 7.1 20 139-158 38-57 (65)
342 3sjb_C Golgi to ER traffic pro 42.0 70 0.0024 24.0 6.2 19 103-121 21-39 (93)
343 2efr_A General control protein 41.3 1.4E+02 0.0047 24.0 10.0 54 105-158 56-116 (155)
344 1m1j_C Fibrinogen gamma chain; 41.3 97 0.0033 28.6 8.3 44 116-159 88-131 (409)
345 3hhm_B NISH2 P85alpha; PI3KCA, 40.9 97 0.0033 28.0 8.2 13 74-86 144-156 (373)
346 3kin_B Kinesin heavy chain; mo 40.9 43 0.0015 25.4 5.0 21 138-158 94-114 (117)
347 1j1d_C Troponin I, TNI; THIN f 40.5 1.3E+02 0.0046 23.6 10.3 43 117-159 63-105 (133)
348 1am9_A Srebp-1A, protein (ster 40.4 41 0.0014 23.9 4.5 19 131-149 55-73 (82)
349 3mud_A DNA repair protein XRCC 40.0 1.1E+02 0.0038 25.3 7.6 34 108-141 131-164 (175)
350 1a93_A Coiled coil, LZ, MYC pr 39.9 48 0.0016 20.6 4.1 29 124-152 5-33 (34)
351 2p4v_A Transcription elongatio 39.3 1.4E+02 0.0048 23.5 8.3 55 106-160 10-73 (158)
352 1grj_A GREA protein; transcrip 39.3 1.4E+02 0.0047 23.5 8.8 54 106-159 10-72 (158)
353 2l5g_A GPS2 protein, G protein 39.1 60 0.0021 20.6 4.6 21 99-119 9-29 (38)
354 2xzr_A Immunoglobulin-binding 39.0 1.3E+02 0.0044 23.0 8.5 56 102-157 48-107 (114)
355 1j1e_C Troponin I, TNI; THIN f 38.4 1.7E+02 0.0058 24.2 10.3 44 116-159 62-105 (180)
356 2ke4_A CDC42-interacting prote 38.3 1.2E+02 0.0041 22.5 8.6 25 61-86 7-31 (98)
357 2er8_A Regulatory protein Leu3 37.4 16 0.00056 24.5 1.9 20 105-124 49-68 (72)
358 1gmj_A ATPase inhibitor; coile 37.3 1.2E+02 0.0042 22.3 6.9 23 135-157 53-75 (84)
359 2zdi_C Prefoldin subunit alpha 37.1 96 0.0033 23.9 6.6 41 119-159 98-138 (151)
360 3muj_A Transcription factor CO 36.8 50 0.0017 26.4 4.9 38 73-110 94-133 (138)
361 2z5i_A TM, general control pro 36.8 87 0.003 20.7 5.4 12 107-118 14-25 (52)
362 2gyq_A YCFI, putative structur 36.4 1.4E+02 0.0049 24.0 7.8 63 101-166 15-79 (173)
363 2de0_X Alpha-(1,6)-fucosyltran 35.8 1.3E+02 0.0045 28.3 8.5 86 66-153 49-137 (526)
364 1lq7_A Alpha3W; three helix bu 35.8 1.1E+02 0.0036 21.1 6.5 51 107-157 4-65 (67)
365 3hiu_A Uncharacterized protein 35.8 1.3E+02 0.0046 24.2 7.5 30 138-167 42-71 (166)
366 3f6n_A Virion-associated prote 35.4 58 0.002 25.7 5.0 31 107-137 4-34 (129)
367 4b4t_M 26S protease regulatory 35.3 26 0.0009 32.3 3.5 24 116-139 43-66 (434)
368 1fzc_C Fibrin; blood coagulati 34.6 24 0.00083 31.5 3.1 16 122-137 28-43 (319)
369 2j69_A Bacterial dynamin-like 34.4 90 0.0031 30.0 7.2 37 117-153 357-393 (695)
370 1use_A VAsp, vasodilator-stimu 34.2 99 0.0034 20.3 5.6 23 136-158 18-41 (45)
371 1hs7_A Syntaxin VAM3; UP-and-D 34.1 1.3E+02 0.0044 22.4 6.6 48 109-156 37-87 (97)
372 1zxa_A CGMP-dependent protein 34.1 64 0.0022 22.7 4.6 27 112-138 25-51 (67)
373 3gp4_A Transcriptional regulat 34.0 1.6E+02 0.0054 22.6 7.8 13 59-71 38-50 (142)
374 3gpv_A Transcriptional regulat 33.2 1.3E+02 0.0043 23.2 6.8 32 128-159 97-128 (148)
375 3bbp_D GRIP and coiled-coil do 33.1 41 0.0014 24.1 3.4 6 105-110 32-37 (71)
376 2l5g_B Putative uncharacterize 32.8 1E+02 0.0035 20.0 5.5 23 114-136 11-33 (42)
377 4b4t_L 26S protease subunit RP 32.8 46 0.0016 30.7 4.7 28 135-162 74-101 (437)
378 4ad8_A DNA repair protein RECN 32.7 1.9E+02 0.0063 26.3 8.8 15 126-140 207-221 (517)
379 3viq_B Mating-type switching p 32.6 46 0.0016 24.5 3.8 18 107-124 10-27 (85)
380 1m1j_A Fibrinogen alpha subuni 32.5 1.4E+02 0.0047 28.5 7.8 46 104-149 110-155 (491)
381 3vp9_A General transcriptional 32.2 1.6E+02 0.0053 22.0 6.7 13 74-86 11-23 (92)
382 3he5_B Synzip2; heterodimeric 32.1 1.1E+02 0.0037 20.2 6.8 12 144-155 35-46 (52)
383 3t97_B Nuclear pore complex pr 32.1 1.3E+02 0.0045 21.1 7.8 39 105-143 10-48 (65)
384 1pd7_B MAD1; PAH2, SIN3, eukar 32.1 56 0.0019 19.2 3.3 20 94-113 2-21 (26)
385 3f1i_H Hepatocyte growth facto 32.1 1.6E+02 0.0056 22.2 7.0 39 104-142 44-88 (98)
386 1aa0_A Fibritin, gpwac E; bact 32.0 1.7E+02 0.0058 22.5 7.0 46 117-171 48-93 (113)
387 3he5_A Synzip1; heterodimeric 32.0 1.1E+02 0.0036 20.0 7.3 41 114-154 5-45 (49)
388 4fla_A Regulation of nuclear P 31.9 1.9E+02 0.0066 22.9 9.8 34 101-134 68-101 (152)
389 3ogh_B Protein YCIE; iron-bind 31.8 1.2E+02 0.0042 24.5 6.7 57 105-164 12-71 (171)
390 3s84_A Apolipoprotein A-IV; fo 31.7 2.5E+02 0.0084 24.1 11.4 17 72-88 17-33 (273)
391 3csx_A Putative uncharacterize 31.7 1.5E+02 0.0051 21.6 6.7 54 106-159 16-76 (81)
392 1x79_B RAB GTPase binding effe 31.5 1.8E+02 0.006 22.4 7.6 46 108-153 16-65 (112)
393 1ytz_I Troponin I; muscle, THI 31.2 2.3E+02 0.0077 23.5 8.3 35 125-159 68-102 (182)
394 3hhm_B NISH2 P85alpha; PI3KCA, 31.1 1E+02 0.0036 27.8 6.7 38 112-149 219-256 (373)
395 2p22_C Protein SRN2; endosome, 31.1 2.2E+02 0.0075 23.4 8.2 34 123-156 83-116 (192)
396 2gs4_A Protein YCIF; stress pr 31.0 1.5E+02 0.0051 23.7 7.0 60 104-166 11-73 (166)
397 2xu6_A MDV1 coiled coil; prote 30.9 1.5E+02 0.005 21.3 6.4 49 103-151 19-67 (72)
398 3s84_A Apolipoprotein A-IV; fo 30.8 1.7E+02 0.0058 25.2 7.8 8 129-136 69-76 (273)
399 1g73_A SMAC/diablo, second mit 30.5 2.2E+02 0.0075 23.3 7.8 60 98-157 40-103 (162)
400 1gax_A Valrs, valyl-tRNA synth 30.3 1.1E+02 0.0038 30.5 7.3 48 112-159 800-861 (862)
401 3fx0_A NF-kappa-B essential mo 30.3 38 0.0013 25.6 3.0 15 143-157 79-93 (96)
402 3he4_A Synzip6; heterodimeric 30.2 29 0.00097 23.3 2.1 14 114-127 26-39 (56)
403 2js5_A Uncharacterized protein 30.1 1.5E+02 0.0051 21.1 8.4 53 107-159 5-64 (71)
404 1t6f_A Geminin; coiled-coil, c 29.9 1.1E+02 0.0036 19.3 5.7 23 120-142 8-30 (37)
405 3q0x_A Centriole protein; cent 29.8 2.6E+02 0.0089 23.8 9.0 33 110-142 183-215 (228)
406 3mtu_E Head morphogenesis prot 29.4 1.6E+02 0.0055 21.3 8.3 39 102-140 27-65 (77)
407 3fx0_A NF-kappa-B essential mo 29.4 61 0.0021 24.5 4.0 14 138-151 81-94 (96)
408 3kqg_A Langerin, C-type lectin 29.4 72 0.0025 24.4 4.7 9 110-118 4-12 (182)
409 1yhn_B RILP, RAB interacting l 29.0 77 0.0026 22.3 4.2 26 128-153 5-30 (65)
410 1pyi_A Protein (pyrimidine pat 29.0 1.4E+02 0.0048 20.6 5.9 11 105-115 48-58 (96)
411 2aze_A Transcription factor DP 28.9 1E+02 0.0034 25.1 5.5 28 105-132 5-32 (155)
412 4i0x_B ESAT-6-like protein MAB 28.7 1.6E+02 0.0054 20.9 8.3 21 138-158 65-85 (103)
413 1tu3_F RAB GTPase binding effe 28.7 82 0.0028 22.9 4.5 11 143-153 43-53 (79)
414 3lvg_A Clathrin heavy chain 1; 28.7 16 0.00056 35.6 0.9 21 104-124 549-569 (624)
415 2pms_C Pneumococcal surface pr 28.7 71 0.0024 25.1 4.5 11 146-156 109-119 (125)
416 2p2u_A HOST-nuclease inhibitor 28.4 2.3E+02 0.0078 22.6 9.5 54 100-159 18-71 (171)
417 2f23_A Anti-cleavage anti-GREA 28.3 2.1E+02 0.0072 22.2 8.1 54 107-160 12-73 (156)
418 1g1e_B SIN3A; four-helix bundl 28.0 1.6E+02 0.0055 21.2 6.1 17 99-115 9-25 (89)
419 1fmh_B General control protein 27.9 1E+02 0.0036 18.6 4.5 25 107-131 3-27 (33)
420 4ani_A Protein GRPE; chaperone 27.8 2.1E+02 0.0073 24.0 7.6 7 205-211 200-206 (213)
421 2oa5_A Hypothetical protein BQ 27.8 35 0.0012 26.4 2.5 23 107-129 10-32 (110)
422 3sjb_C Golgi to ER traffic pro 27.7 1.9E+02 0.0065 21.6 7.7 18 119-136 23-40 (93)
423 4gkw_A Spindle assembly abnorm 27.7 2.4E+02 0.0082 22.7 9.9 19 110-128 44-62 (167)
424 3ghg_B Fibrinogen beta chain; 27.5 1.3E+02 0.0045 28.3 6.9 12 75-86 93-104 (461)
425 1ytz_I Troponin I; muscle, THI 27.4 1E+02 0.0034 25.7 5.4 38 105-142 62-99 (182)
426 1nfn_A Apolipoprotein E3; lipi 27.4 2.5E+02 0.0084 22.7 11.4 83 73-157 69-160 (191)
427 2e50_A Protein SET; histone ch 27.1 2.5E+02 0.0085 23.4 8.0 38 99-139 27-64 (225)
428 3edu_A Beta-I spectrin, spectr 26.7 91 0.0031 24.6 5.0 32 67-105 78-109 (218)
429 3gwk_C SAG1039, putative uncha 26.7 1.5E+02 0.0051 20.4 5.6 10 147-156 69-78 (98)
430 1xkm_B Distinctin chain B; por 26.5 77 0.0026 18.3 3.2 19 97-115 3-21 (26)
431 2gpe_A Bifunctional protein PU 26.5 1.2E+02 0.004 18.9 4.6 31 74-110 13-44 (52)
432 2d8d_A Aroag, phospho-2-dehydr 26.5 86 0.0029 22.1 4.3 36 107-142 5-40 (90)
433 2gkw_A TNF receptor-associated 26.1 1.2E+02 0.0041 24.1 5.6 26 109-134 4-29 (192)
434 3m0d_C TNF receptor-associated 25.9 1.6E+02 0.0054 20.0 9.2 33 106-138 7-39 (65)
435 3qks_A DNA double-strand break 25.9 2.4E+02 0.0082 22.1 8.7 36 132-170 167-202 (203)
436 3he4_B Synzip5; heterodimeric 25.8 1.4E+02 0.0047 19.3 6.2 16 105-120 10-25 (46)
437 2pms_C Pneumococcal surface pr 25.7 1.8E+02 0.0061 22.8 6.3 8 79-86 22-29 (125)
438 2e7s_A RAB guanine nucleotide 25.6 40 0.0014 26.9 2.5 18 140-157 96-113 (135)
439 1e91_A Paired amphipathic heli 25.6 80 0.0028 22.6 4.0 19 98-116 5-23 (85)
440 2p32_A Heat shock 70 kDa prote 25.5 2E+02 0.0069 21.1 7.4 12 75-86 23-34 (120)
441 3vlc_E Golgi to ER traffic pro 25.2 73 0.0025 23.9 3.8 19 104-122 29-47 (94)
442 2yko_A LINE-1 ORF1P; RNA-bindi 25.1 1.6E+02 0.0056 25.3 6.5 37 102-138 10-46 (233)
443 3gwk_C SAG1039, putative uncha 25.1 1.7E+02 0.0058 20.1 5.7 29 110-138 13-41 (98)
444 4afl_A P29ING4, inhibitor of g 25.1 1.4E+02 0.0047 21.6 5.3 39 98-136 4-42 (104)
445 2j69_A Bacterial dynamin-like 25.0 1.1E+02 0.0039 29.3 6.1 34 124-157 357-390 (695)
446 3vlc_E Golgi to ER traffic pro 25.0 44 0.0015 25.1 2.6 16 121-136 32-47 (94)
447 1cii_A Colicin IA; bacteriocin 24.9 4.7E+02 0.016 25.2 10.0 31 95-125 374-404 (602)
448 1s94_A S-syntaxin; three helix 24.7 1.9E+02 0.0066 22.6 6.6 14 130-143 78-91 (180)
449 1z0k_B FYVE-finger-containing 24.7 1.3E+02 0.0046 21.3 4.9 15 121-135 48-62 (69)
450 1hlo_A Protein (transcription 24.7 1.2E+02 0.0042 21.0 4.8 18 137-154 61-78 (80)
451 2b3t_B RF-1, peptide chain rel 24.7 25 0.00086 32.1 1.4 86 74-159 11-99 (360)
452 3zbh_A ESXA; unknown function, 24.5 1.6E+02 0.0056 19.9 5.5 12 145-156 68-79 (99)
453 1y1u_A Signal transducer and a 24.3 3E+02 0.01 26.6 8.8 9 110-118 24-32 (585)
454 3pxg_A Negative regulator of g 23.7 67 0.0023 29.0 4.0 17 137-153 424-440 (468)
455 1zhc_A Hypothetical protein HP 23.4 1.9E+02 0.0066 20.2 5.9 20 127-146 45-64 (76)
456 1joc_A EEA1, early endosomal a 23.3 2.4E+02 0.0083 21.3 8.3 29 110-138 9-37 (125)
457 2pnv_A Small conductance calci 23.2 1.4E+02 0.0049 19.2 4.4 23 135-157 18-40 (43)
458 1z0k_B FYVE-finger-containing 23.2 1.4E+02 0.0048 21.1 4.8 20 126-145 46-65 (69)
459 2xzr_A Immunoglobulin-binding 23.1 2.5E+02 0.0087 21.4 9.9 32 125-156 68-99 (114)
460 4abm_A Charged multivesicular 23.0 2.1E+02 0.0071 20.3 9.7 18 141-158 60-77 (79)
461 3p01_A Two-component response 22.8 64 0.0022 24.0 3.2 59 97-156 2-60 (184)
462 2a01_A Apolipoprotein A-I; fou 22.8 2.5E+02 0.0085 23.4 7.2 17 72-88 127-143 (243)
463 1no4_A Late, head morphogenesi 22.8 2.3E+02 0.008 20.9 9.4 50 101-150 22-71 (97)
464 3ilw_A DNA gyrase subunit A; D 22.6 1.7E+02 0.006 27.5 6.7 19 122-140 419-437 (470)
465 1few_A Second mitochondria-der 22.5 3.4E+02 0.011 22.6 8.4 60 98-157 40-103 (184)
466 1lwu_B Fibrinogen beta chain; 22.2 1.5E+02 0.005 26.4 5.8 12 99-110 10-21 (323)
467 2vkl_A RV0948C/MT0975; helical 22.1 2.2E+02 0.0075 20.3 6.1 35 107-141 14-48 (90)
468 2z5i_A TM, general control pro 21.7 1.8E+02 0.0061 19.1 6.0 16 117-132 10-25 (52)
469 2gd5_A Charged multivesicular 21.7 2.6E+02 0.0088 22.1 6.8 48 107-154 23-75 (179)
470 1yzm_A FYVE-finger-containing 21.7 1.9E+02 0.0064 19.3 5.7 18 127-144 29-46 (51)
471 1s1c_X RHO-associated, coiled- 21.7 2.2E+02 0.0075 20.2 5.6 23 109-131 10-32 (71)
472 2vs0_A Virulence factor ESXA; 21.6 1.9E+02 0.0065 19.4 5.5 20 138-157 58-77 (97)
473 2f05_A Paired amphipathic heli 21.5 1.9E+02 0.0065 21.6 5.6 59 99-157 6-77 (105)
474 1cxz_B Protein (PKN); protein- 21.5 2.4E+02 0.0084 20.6 7.5 28 135-162 58-85 (86)
475 1ybz_A Chorismate mutase; cons 21.4 1.4E+02 0.0049 21.5 4.7 34 107-140 19-52 (91)
476 3err_A Fusion protein of micro 21.1 3.7E+02 0.013 25.3 8.7 59 103-164 30-88 (536)
477 1zvu_A Topoisomerase IV subuni 21.1 1.8E+02 0.0062 28.9 6.7 43 114-156 404-446 (716)
478 3rmi_A Chorismate mutase prote 21.1 1.9E+02 0.0067 21.5 5.6 39 103-141 10-48 (114)
479 1ykh_B RNA polymerase II holoe 20.9 1.9E+02 0.0064 22.3 5.6 38 112-149 92-129 (132)
480 4ghu_A TNF receptor-associated 20.8 1.7E+02 0.0059 23.5 5.6 29 109-137 4-32 (198)
481 1r8e_A Multidrug-efflux transp 20.8 2.5E+02 0.0087 22.7 6.8 50 100-149 66-116 (278)
482 1rtm_1 Mannose-binding protein 20.8 1.1E+02 0.0037 22.6 4.1 24 110-133 2-25 (149)
483 3frt_A Charged multivesicular 20.6 2.3E+02 0.0077 23.8 6.4 41 115-155 10-50 (218)
484 1gs9_A Apolipoprotein E, APOE4 20.5 3.2E+02 0.011 21.7 11.5 82 73-156 69-159 (165)
485 2lw9_A Unconventionnal myosin- 20.4 76 0.0026 21.3 2.7 16 140-155 6-21 (51)
486 1yke_B RNA polymerase II holoe 20.4 1.9E+02 0.0064 23.0 5.6 38 112-149 92-129 (151)
487 2gd5_A Charged multivesicular 20.2 2.4E+02 0.0081 22.4 6.3 37 116-152 11-47 (179)
488 3mtu_E Head morphogenesis prot 20.2 2.5E+02 0.0086 20.3 7.9 48 112-159 30-77 (77)
No 1
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.77 E-value=4.6e-19 Score=131.12 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=63.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
++.+|+.+||+||+.||++|.+|+++||.....|.||++||..||+||++|+.+++.|+.+.+.|..+...|++++.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999986555799999999999999999999988887666655555555544443
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.76 E-value=1.1e-18 Score=129.73 Aligned_cols=72 Identities=26% Similarity=0.393 Sum_probs=64.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLK 132 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~ 132 (214)
++.+|+.+||+||++||++|.+|+++||+ ...|+||++||.+||+||++|+.+++.|+.++..|+.++++..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~-~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVG-TEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36789999999999999999999999975 4479999999999999999999999999999998888775543
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.75 E-value=2.5e-18 Score=129.55 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=67.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~-~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
++.+|+.+||+||+.||++|..|+++||.. ...|.||++||.+||+||++|+.+.+.+..+.+.|+.+...|+.++.+|
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999653 2369999999999999999999999998888777777776666666655
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.74 E-value=5.7e-18 Score=125.76 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=68.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslLPP~-~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
+.+|+..||+||+.||++|..|+++||.. ...|.+|++||.+|++||++|+.+.++|..+++.|+.+..+|+++++.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999743 346899999999999999999999999999888888888877777654
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.69 E-value=2.8e-17 Score=121.03 Aligned_cols=68 Identities=18% Similarity=0.344 Sum_probs=61.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEE 127 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~e 127 (214)
++.+|+.+||+||+.||++|.+|+++||.....|.+|++||..||+||++|+.+++.|+.+++.|+.+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999976545699999999999999999999999998888877653
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.67 E-value=8.5e-17 Score=126.96 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=51.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGR--PARTDKPAILDDAIRVLNQLRTESQELKET 120 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~--~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~ 120 (214)
++.+|+..||+||++||++|.+|+++||++. ..|++|++||.+||+||+.|+.+++.|+++
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999998654 248999999999999999999999999864
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=3.4e-16 Score=110.88 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=50.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCCCCC----CCCChhhHHHHHHHHHHHHHHHHH
Q 028060 59 SRPGSKACREKLRRERLNDRFLDLSCILEPGRP----ARTDKPAILDDAIRVLNQLRTESQ 115 (214)
Q Consensus 59 ~~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~----~K~DKasIL~dAI~yIk~Lr~~vq 115 (214)
.++.+|+..||+||++||++|.+|+++||++.. .|+||++||..||+||++|+.+.+
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999987543 378999999999999999987653
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.59 E-value=7.7e-16 Score=112.43 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=51.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~ 118 (214)
++.+|+..||+||++||++|.+|+++||. ...|+||++||..||+||++|+.++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPG-NARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSS-CCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 36789999999999999999999999964 45699999999999999999999876553
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.55 E-value=1e-15 Score=108.95 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=48.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCC-----CCCCChhhHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGR-----PARTDKPAILDDAIRVLNQLRTES 114 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~-----~~K~DKasIL~dAI~yIk~Lr~~v 114 (214)
++.+|+.+||+||++||++|.+|+++||++. ..+.+||+||..||+||++|+.++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999997531 357899999999999999998765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.49 E-value=9.5e-15 Score=107.61 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=48.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCC-CCCCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 028060 59 SRPGSKACREKLRRERLNDRFLDLSCILEP-GRPART-DKPAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 59 ~~~~sH~~~ERkRRdkLN~~F~~LrslLPP-~~~~K~-DKasIL~dAI~yIk~Lr~~vq~L~ 118 (214)
.++.+|+.+||+||+.||++|.+|+.+||+ ....|. +|++||..||+||+.|+.++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999974 233455 799999999999999999988764
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=8.7e-15 Score=107.15 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=47.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCC--CCCCCChhhHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPG--RPARTDKPAILDDAIRVLNQLRT 112 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~--~~~K~DKasIL~dAI~yIk~Lr~ 112 (214)
++.+|+..||+||++||++|.+|+++||.+ ..+|+||++||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999753 23699999999999999999975
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.31 E-value=4.7e-13 Score=96.72 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=50.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 028060 58 CSRPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTES 114 (214)
Q Consensus 58 ~~~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~v 114 (214)
..++..|+.+||+|+..||+.|..|+.+||.....|.+|+.||..||+||..|+..+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999997543468999999999999999998754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.19 E-value=1.3e-11 Score=86.99 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRTES 114 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~-~~~K~DKasIL~dAI~yIk~Lr~~v 114 (214)
++..|+.+||+|+..||+.|..|+..||.. ...|.+|+.||..||+||..|+..+
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999742 2358999999999999999998765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.09 E-value=7.8e-11 Score=105.05 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=42.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 028060 60 RPGSKACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTE 113 (214)
Q Consensus 60 ~~~sH~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~ 113 (214)
++.+|+..||+||++||..|.+|+++|| +...|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p-~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLP-GNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCC-SSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCC-CCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3678999999999999999999999997 4557999999999999999998754
No 15
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.08 E-value=1.4e-09 Score=81.56 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhcCCC--CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 72 RERLNDRFLDLSCILEPG--RPARTDKPAILDDAIRVLNQLRTESQELKETNE 122 (214)
Q Consensus 72 RdkLN~~F~~LrslLPP~--~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~ 122 (214)
|..||++|.+|+.+||++ ...|.+|++||..||+||+.|+.+++++.++..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999863 336899999999999999999999988876543
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.84 E-value=1.3e-09 Score=98.55 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=47.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCCC--CCCCCChhhHHHHHHHHHHHHHHH
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCILEPG--RPARTDKPAILDDAIRVLNQLRTE 113 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslLPP~--~~~K~DKasIL~dAI~yIk~Lr~~ 113 (214)
+.+|+..||+||++||+.|.+|+++||.. ...|+||++||..||.||+.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 67899999999999999999999999731 236999999999999999999753
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.69 E-value=6e-09 Score=75.50 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHH
Q 028060 64 KACREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRT 112 (214)
Q Consensus 64 H~~~ERkRRdkLN~~F~~LrslLPP~-~~~K~DKasIL~dAI~yIk~Lr~ 112 (214)
=+.+||+|+..||+.|..||.+||.. ...|.+|+.||.-||+||..|+.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 34779999999999999999999642 22589999999999999999974
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.86 E-value=3.3e-05 Score=59.32 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC-CCCCCChhhHHHHHHHHHHHHHHHHHH
Q 028060 66 CREKLRRERLNDRFLDLSCILEPG-RPARTDKPAILDDAIRVLNQLRTESQE 116 (214)
Q Consensus 66 ~~ERkRRdkLN~~F~~LrslLPP~-~~~K~DKasIL~dAI~yIk~Lr~~vq~ 116 (214)
..||.|=..||+.|..||..||.. ...|.+|..||.-||+||..|+..++.
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 345778889999999999999642 225899999999999999999876653
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.57 E-value=0.00072 Score=50.33 Aligned_cols=60 Identities=28% Similarity=0.493 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+..||+-|.-|+-+++.|+.+|..|.++..+++.....|+.|+..|+.|....+..|.++
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888888888888888888888888888887777766653
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.92 E-value=0.0069 Score=45.04 Aligned_cols=55 Identities=29% Similarity=0.357 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI-------LKADKEKLEQQLKVM 159 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~-------Lk~e~e~L~~qlk~~ 159 (214)
+.+.+|+.+|+++-+...-|+.++++|+.+.+.|.+++.. |..|+++|+++...+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6788899999998888888888888888888777777766 667888887777665
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=96.49 E-value=0.02 Score=39.95 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 68 EKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 68 ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
||++|-+..++..+-++-- +-..|+.+|+.++..|+.+|..|..++..|..++..|+.
T Consensus 1 Ekr~rrrerNR~AA~rcR~---------------rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRN---------------RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666766666643 234788899999999999998888888777777766654
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.47 E-value=0.029 Score=44.94 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhh--cCCCCCCCCChhhHHHH--HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q 028060 73 ERLNDRFLDLSCI--LEPGRPARTDKPAILDD--AIRVLNQLRTESQELKETNEKLQ--------------EEIKSLKAE 134 (214)
Q Consensus 73 dkLN~~F~~Lrsl--LPP~~~~K~DKasIL~d--AI~yIk~Lr~~vq~L~~~n~~L~--------------~ei~eL~~e 134 (214)
..+|+++.+++.. -|- --.++.+||.- .++=+-+++.+.+.|+.+.+.+. .++++++.+
T Consensus 35 ~~vd~km~ei~~~~~~~~---l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 35 SYINNKITEFNKEESYRR---MSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHTTCHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999966 632 24788888862 22222234444444444444333 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 135 KNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~ql 156 (214)
+.+|++++..|+.++-+|+..+
T Consensus 112 ~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 112 IKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 23
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=96.21 E-value=0.0081 Score=43.33 Aligned_cols=42 Identities=31% Similarity=0.298 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
-.||++|+.++..|+..+..|..+...|+.++..|+.|+..|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478888888888888877776666666666666666555443
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=95.80 E-value=0.013 Score=40.06 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=14.8
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRT-------ESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 102 dAI~yIk~Lr~-------~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+|++||++--. .++.|+.+|..|+.++.+|+.+..||+.
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889887633 4555555555555555555555555443
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.67 E-value=0.058 Score=43.15 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
-|..|+.++..++..++.+..++.+|+.++++|+.++..|.++.+
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666666666666666666665554
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.46 E-value=0.039 Score=38.03 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
.|+.+|+.++..|+.+|..|..++..|+.|+..|+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766666666555555555443
No 27
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.37 E-value=0.14 Score=39.39 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=41.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 93 RTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 93 K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.++|..++.+ ||. |+..+..+++++..|+...+..-..+.||..|..+|+.|..+|.++-+.+
T Consensus 29 ~mSKqELIqE---Yl~-LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 29 NMSKQELIKE---YLE-LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp TSCHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788888774 554 88888888888888887555555555555555555555555555554444
No 28
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.16 Score=41.67 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=35.9
Q ss_pred HHHHH-HHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 66 CREKL-RRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 66 ~~ERk-RRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~ 144 (214)
..+|. =|+.+-.+|.+|-.-+ .+-+.. .=+|=+..-+.-|..|+.+...|+..+..|.+++++-......++||...
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~-~~~~~~-~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~a 107 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDN-SGAIGG-NIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALIS 107 (152)
T ss_dssp ----------------------------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhh-ccCCCc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 4777777777776665 222111 11222333345666666666666666666666555555555566666666
Q ss_pred HHHHHHHHHHHHHH
Q 028060 145 LKADKEKLEQQLKV 158 (214)
Q Consensus 145 Lk~e~e~L~~qlk~ 158 (214)
|+.+..-+++.++.
T Consensus 108 Lqlq~n~lE~kl~k 121 (152)
T 3a7p_A 108 GTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555554443
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.19 E-value=0.1 Score=40.11 Aligned_cols=55 Identities=33% Similarity=0.480 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKN----------------------------ELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ekn----------------------------ELr~Ek~~Lk~e~e~L~~ql 156 (214)
+-+..|+.+++.|+.+++.|.+++..|..++. ..+.+...|++|+++|...+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777766665443 34556677888888888877
Q ss_pred HHh
Q 028060 157 KVM 159 (214)
Q Consensus 157 k~~ 159 (214)
+.|
T Consensus 92 ~~l 94 (100)
T 1go4_E 92 RAM 94 (100)
T ss_dssp TTC
T ss_pred HHH
Confidence 765
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.81 E-value=0.1 Score=37.94 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
-|.+|+..+++..++....++.|++|..++.|..++...|+.++++++.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3888999888888888888899999999999999999999988888743
No 31
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=94.64 E-value=0.041 Score=38.10 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
+|+.+|+.++..|+.+|..|..++..|..|+..|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766666666555555554444
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.13 E-value=0.13 Score=35.79 Aligned_cols=29 Identities=38% Similarity=0.463 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEK 135 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~ek 135 (214)
+..|+.+++.|+.+|..|..++..|+.|+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.11 E-value=0.16 Score=33.39 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
.|+.+|+.++..|+..|.+|.+.+..|..|-.=||+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 489999999999998888888877776666655554
No 34
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.89 E-value=0.51 Score=34.46 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+|...-+......+.+.+.-.....++..+..+|..||..|+.+++.|+.++..+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665555545555555555556666677777777777777777777777777665
No 35
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.89 E-value=0.31 Score=35.29 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.+..+++.++..|..|+..++.|...+.+-+.+...++.|+.++.++|.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788888899999999999999999988888888888888877664
No 36
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.65 E-value=0.79 Score=34.19 Aligned_cols=54 Identities=19% Similarity=0.375 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKL------------QEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L------------~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+-|+.|+.+...|+.+...+ +.+|.+|+..+.++..++..|..|+..|+..+..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555443333 3566777777777777777777777777766544
No 37
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=93.51 E-value=0.63 Score=34.47 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+-|.-|++|+-+|..|+.+.-+-..+++.-+.|+..|+.....-.+++++|+.||.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 446778999999999998887777777888888888888888888999999988753
No 38
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.42 E-value=0.66 Score=34.55 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+|...-+.....-+.+.+.-.....++..+..+|..||..|+.+++.|+.++..
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354443333333444444444444555556666666666666666666655554
No 39
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=93.40 E-value=0.064 Score=36.65 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
.||.+|+.+|..|+.+|..|..++..|..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777776666666666555543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.28 E-value=0.44 Score=44.01 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 126 EEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 126 ~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.++.+++....+.++....+++|...+.++++.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445555555555555553
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.87 E-value=0.46 Score=32.48 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
....|+.++..|..+..+|+.+...|+.|+..|.++|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666666666544
No 42
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=92.53 E-value=0.16 Score=35.57 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 126 EEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 126 ~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+.+.+|..+..+|..+|..|+.+++.|.++|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555443
No 43
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.32 E-value=0.55 Score=34.56 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+..+++.++..|..|+..++.|...+.+-+.+...++.|+.++.++|.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677778888888888888888888888888888888887776664
No 44
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.12 E-value=1.1 Score=31.06 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.+|=..=+.+.+.|+.+.+.|..+..+|+.+++.|+.|+..|+
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444554444444444444444444444444443
No 45
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=92.03 E-value=0.53 Score=31.45 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
.|++++..|++.|-+|+..-+.|..-+..||+|.++|..|.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 47888889999888888777777777788888777776554
No 46
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=91.80 E-value=0.9 Score=29.99 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 148 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e 148 (214)
..+.||+.++..|+.+|++|..+--.-+.-+.-|..|.+.|+..
T Consensus 3 nlvaqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999988765433333333344444444433
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.80 E-value=2.2 Score=33.34 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=33.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 93 RTDKPAILDDAIRVLNQLRTESQELKET----NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 93 K~DKasIL~dAI~yIk~Lr~~vq~L~~~----n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+.+|-.++..=-.-|..|+.+++.++.+ ..+|+..+.+|..++.+-+..++....|.+.|..++..+
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333334444444444322 234455555555566665555555566666666666654
No 48
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.79 E-value=0.59 Score=33.99 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+|..++..|+....-+..-|++|...+.+...+...|+.++..|..+++.+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666676666666666777777777777777777777777777776653
No 49
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.75 E-value=1 Score=33.81 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
..|+.+++.|+.+-..|..++..|..+..++..+...++.+.++|
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444445555554444444444444444444
No 50
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=91.66 E-value=1.4 Score=33.00 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+...|+.+...|..++..|+.|+..+..|++.+.+.+.++
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777777777777655
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=91.47 E-value=0.96 Score=31.22 Aligned_cols=36 Identities=42% Similarity=0.469 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
...|+.++..|..+..+|+.+...|+.|+..|...|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555544
No 52
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.33 E-value=0.98 Score=35.37 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
-.|..++=.||.+|+.++..|+.+++.-+...+....+...||.++..|
T Consensus 32 e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 32 ENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999988776655555555555555555444
No 53
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.30 E-value=1.3 Score=34.35 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
|..|+.++..|...+..|+..+++|.+...+|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 33334444444444444444444433333333
No 54
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.26 E-value=2.2 Score=33.08 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..+.+|-+....|...-..|+.....+.+.+.+.....++|..++-.|..+++.|..++...
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777766677766666666666666666666666667777777777666554
No 55
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=91.24 E-value=1 Score=30.49 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+.+|+.++..|...|+.|. ..+.+.|++...|+.++++|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~-------~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLM-------ETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666665554 45556666666666676665
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=91.23 E-value=0.62 Score=42.74 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|..|+.++..|+++..+|++++++++.+..++.++........-+|..+++.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45788888888888888888888888888888887777777777787777774
No 57
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.21 E-value=2.1 Score=33.35 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 028060 144 ILKADKEKLEQQLKVM 159 (214)
Q Consensus 144 ~Lk~e~e~L~~qlk~~ 159 (214)
++..+|+.|+.||..+
T Consensus 87 kl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 4455666666665554
No 58
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.86 E-value=0.27 Score=43.15 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
|+.++..|..+.+.|+.+++++++|...||.|+++|.+
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333444444444445555555555555555555443
No 59
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.85 E-value=0.47 Score=35.36 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
.+++.++..|+.+|..|+.+|..|+.|+..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666776666666666555555443
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.76 E-value=5.4 Score=36.68 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.++++++...++..+++.+....|+++|++.+++|+..|++.+..
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444446666777777777777888888887777777777776543
No 61
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.74 E-value=2.5 Score=32.12 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
+-+-|.+|+.++...+.+...|..++.+-+...-+...++..+.+|+|.|-.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333344444444444555555443
No 62
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=90.71 E-value=0.39 Score=33.01 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 128 IKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.+|..+..+|..++..|+.++..|+.++.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 63
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.57 E-value=2.1 Score=36.03 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQ 125 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~ 125 (214)
-+++|+.++..|..+.+.++
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 64
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=90.51 E-value=0.63 Score=33.35 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
....|+.++.+|......|..|+..|+.+++.|..+++.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666777777777777777777654
No 65
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.36 E-value=1.6 Score=33.24 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
..|+.++.+|+.++.....++..|..++.+-+........++.+++++|..++
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665555555555555566666666666553
No 66
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=90.11 E-value=1.5 Score=33.73 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
.+.+|+.+...|+......-..+++|..++..|+.||+.|..|.+-..++
T Consensus 45 ~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 45 SLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34556677767776666677888999999999999999999888877665
No 67
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.10 E-value=0.31 Score=42.81 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTG 164 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~ 164 (214)
...|+.++..|......|.++...++.|+++|+.|++.+..||.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45667777777666666788888888888888888888877765
No 68
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.02 E-value=2.5 Score=35.06 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 72 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 72 RdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
|+.|-.-+..|.+.|... +. -...+-+.|.+|+.+++.|..+.+.+......+..++..|.+....|..++..
T Consensus 64 k~~Leke~~~LQa~L~qE---r~----~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAE---RR----DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555221 11 12334466667777777777766666666666666666666666666665555
Q ss_pred HH
Q 028060 152 LE 153 (214)
Q Consensus 152 L~ 153 (214)
++
T Consensus 137 ~e 138 (168)
T 3o0z_A 137 LE 138 (168)
T ss_dssp HH
T ss_pred hh
Confidence 55
No 69
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.94 E-value=0.89 Score=46.70 Aligned_cols=16 Identities=44% Similarity=0.785 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028060 138 LREEKLILKADKEKLE 153 (214)
Q Consensus 138 Lr~Ek~~Lk~e~e~L~ 153 (214)
|++|++.|+++++.|+
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 70
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=89.91 E-value=2 Score=33.05 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|.-|+..+..+++.+.+++.+.++...+...++.....|+.++..|+.||+..
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777788888888888888888888888888888888888888873
No 71
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=89.53 E-value=0.67 Score=32.64 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 111 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 111 r~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
+.++|+|-+-|..|.+|++-|..+++.|+.|+..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 456777777777888888888888888888877765
No 72
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=89.18 E-value=1.5 Score=29.61 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.|+.++..|......|-+-....+.++++|..+|..+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555556666666666666666666554
No 73
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.98 E-value=2.1 Score=31.84 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 114 SQELKETNEKLQEEIKSL 131 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL 131 (214)
|..|+.+|..|..+++.+
T Consensus 25 VR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555554444443
No 74
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.91 E-value=1.2 Score=32.54 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
-..+++.++..|+.+|..|+.++..|+.|+..|+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777788888777777777766666554
No 75
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=88.89 E-value=2.7 Score=28.65 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.||-.+|+.|+.+|..|+.|.+.=...++.|..|...+|.=...|+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 4678889999999998888887777777777777776665444443
No 76
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=88.88 E-value=1.6 Score=31.71 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+|+++|.+|+...+.|+.....|-+|.+ .-..+||+-+.+|+.+++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc
Confidence 35889999999999999998877766655 45678999999999999874
No 77
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=88.67 E-value=3.9 Score=27.26 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+..|+..+..++.....+..+...++...+++..+......+|..++.|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555555555555555555555554443
No 78
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=88.66 E-value=2.1 Score=28.45 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
+|++.|.+|+...+.|+.....|-+|.+ .-..+||+-+.+|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 5788999999999999988877766555 4567889999999876
No 79
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.58 E-value=4.6 Score=31.27 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.-+.+.......|......|...+.++...+.+..+.+..|.+++.+|++++..+
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555566667777777777777777777777777777777766543
No 80
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=88.58 E-value=3.1 Score=27.74 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
..-+++..+...+..++.+...+...+..+...++..+++...++.+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344677777778888888888889999999999999999999998888653
No 81
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=88.44 E-value=3 Score=35.36 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+.=++.-+..|+.++..|..+++.|+.++..|..+..++-.
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56566665566666666666655555555555555444433
No 82
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.20 E-value=2.1 Score=44.04 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028060 138 LREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 138 Lr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|++....|+.|+.+|++|+..+
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777777777654
No 83
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=88.18 E-value=1.9 Score=39.70 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..|+.++..|++..++|++++++++.+..++.++......+.-+|..++..+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688888888888888888888888888888888777777777788888775
No 84
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.18 E-value=0.94 Score=30.69 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 128 IKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
++.|+.|..+|+.+...|+.+++.|..+|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 85
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=87.98 E-value=0.052 Score=39.82 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
+.|+++|.+|....++|..||..||
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554
No 86
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=87.61 E-value=0.76 Score=32.00 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEK 135 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ek 135 (214)
..|+.+|+.++..|+.+|..|..++..|+.++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888888888777777766554
No 87
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.54 E-value=1 Score=32.29 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 128 IKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|+.|..+..+|..|+..|+.+++.|+++|.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555666666666554
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.34 E-value=4 Score=32.17 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
.+.|+.||+.|++++.+...|..+|+.+++.|..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 4444445555555444444444444444444433
No 89
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.94 E-value=1.2 Score=28.32 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKA 133 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~ 133 (214)
+||+.+|++|..++..|+.++..|+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555555555555444444444433
No 90
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=86.84 E-value=2.7 Score=28.40 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+.-+.+|..++..|..||..|+.+++.|++++
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777778888888888888888877644
No 91
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.83 E-value=1.7 Score=27.51 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLK 132 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~ 132 (214)
++||+.+|++|..++..|+.++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555555555554444444443333
No 92
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.78 E-value=6.8 Score=30.15 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA-----------EKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~-----------eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.+.-+-|..|+.+++.++..+..|+..+.++.. .+.+|..+...++.+.++.-++++
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666555544432 333444455555555554444433
No 93
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.72 E-value=5.1 Score=32.72 Aligned_cols=79 Identities=24% Similarity=0.206 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhcCCCCCC--CCChhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 75 LNDRFLDLSCILEPGRPA--RTDKPAILDDAIRVLNQLRTESQELK-------ETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 75 LN~~F~~LrslLPP~~~~--K~DKasIL~dAI~yIk~Lr~~vq~L~-------~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
+++.|.++....++...+ ++... .+..--.-+..|+.++..|+ ..++.|+.|+..|..+.|.+.+....|
T Consensus 44 ~~~l~~e~~~~~~~~~vs~~~~~~~-~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 44 LNELFQDNSGAIGGNIVSHDDALLN-TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp -------------CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCcccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555430000 11111 33333344455555555555 556788899999999999999999999
Q ss_pred HHHHHHHHH
Q 028060 146 KADKEKLEQ 154 (214)
Q Consensus 146 k~e~e~L~~ 154 (214)
+.|...|-+
T Consensus 123 q~EN~~LV~ 131 (152)
T 3a7p_A 123 KKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877643
No 94
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.65 E-value=1.2 Score=41.12 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPT 163 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p 163 (214)
....|+.+++.|..+.+.++++...++.|..+++.+++.+..+|
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~ 93 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVP 93 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33445555566666667777777778888888888888776554
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.44 E-value=3.1 Score=40.12 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLN-QLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 99 IL~dAI~yIk-~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
=+..++.-|. +|+.+++-|+++...--..|+.|+.-+.+++.+.++|..+|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 88888888888766555778888888888888888887444
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=86.39 E-value=5.4 Score=36.97 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 96 KPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 96 KasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
+......++++++.+..++.+|+.......++|+.|...++.++...+.|+..+..|+.
T Consensus 75 ~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 75 LPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445666899999999999998877777777888877777766655666555555544
No 97
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=86.38 E-value=1.3 Score=33.78 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 126 EEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 126 ~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
+++..|+.++.+|+.|+..|+.+++.|+-+|.....+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~ 48 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ 48 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556666677777777777777777777777665443
No 98
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.36 E-value=5.7 Score=29.10 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 148 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e 148 (214)
|..+++.|+.+...|+-.++++.-+++++..+...+..+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333333333
No 99
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.91 E-value=5.9 Score=30.41 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNE 122 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~ 122 (214)
||.+||.++..+..++.
T Consensus 21 ~I~~LR~qid~~~~e~a 37 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKA 37 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444433333333
No 100
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.90 E-value=0.97 Score=28.22 Aligned_cols=15 Identities=33% Similarity=0.351 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEK 123 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~ 123 (214)
||+.+|++|-.+|..
T Consensus 4 QLE~kVEeLl~~n~~ 18 (33)
T 3m48_A 4 QLEAKVEELLSKNWN 18 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH
Confidence 333333333333333
No 101
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.78 E-value=3.9 Score=34.36 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
|..++..++..+..|+.....|+.+..+
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~ 74 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEA 74 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333
No 102
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=85.76 E-value=3.5 Score=30.91 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 115 QELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 115 q~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
..|+.++..|+.+++.|+.|..++..|...+|+..+.|
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555544443
No 103
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.12 E-value=5.2 Score=32.65 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNE 122 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~ 122 (214)
|-.||++...|...+..+..+++
T Consensus 8 LI~Ain~qs~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 44566666666665555555444
No 104
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.99 E-value=4.8 Score=34.18 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|..|+.++..++.....++.++.+++.++..+..+...+++.+++.+.++.
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444555554444
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.96 E-value=18 Score=32.53 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
.+..+++++.|+.+++.++.+...+..+++...+.++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 3344444444444444444444444444444444443
No 106
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=84.38 E-value=2 Score=26.92 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQ 125 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~ 125 (214)
.||+.+|++|-.+|..|+
T Consensus 4 nQLE~kVEeLl~~n~~Le 21 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHH
Confidence 344444444433333333
No 107
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=84.33 E-value=3.9 Score=37.61 Aligned_cols=88 Identities=19% Similarity=0.333 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhhc-CCCCCCCCCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHH
Q 028060 71 RRERLNDRFLDLSCIL-EPGRPARTDK-------PAILDDAIRVLNQLRTESQELKETNEKLQE-E-IKSLKAEKNELRE 140 (214)
Q Consensus 71 RRdkLN~~F~~LrslL-PP~~~~K~DK-------asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~-e-i~eL~~eknELr~ 140 (214)
+-+.+.++|.+|...+ .|+.....++ .+-|...++.+..++...+.++.-.+-+.+ + -.+ -+.+..+
T Consensus 18 ~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e---~~~~a~~ 94 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPE---LEEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CH---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHH---HHHHHHH
Confidence 4556788999998877 2322112223 345666666666666665555544433322 1 111 1234577
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 028060 141 EKLILKADKEKLEQQLKVMAM 161 (214)
Q Consensus 141 Ek~~Lk~e~e~L~~qlk~~~~ 161 (214)
|...|+.+++.|+.+|+.+-.
T Consensus 95 e~~~l~~~l~~le~~l~~lLl 115 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKLRFLLL 115 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 788999999999999997643
No 108
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=84.25 E-value=1 Score=26.42 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKS 130 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~e 130 (214)
|+-||+.++-+|+-+...|..+++.
T Consensus 1 yvyqlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhc
Confidence 3445555555555444444444433
No 109
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=84.23 E-value=10 Score=27.74 Aligned_cols=43 Identities=30% Similarity=0.484 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
|+..-+.|.+-...|..-+..|..|.+++......|+...+.|
T Consensus 30 LrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 30 LKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555444444444444433
No 110
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=84.18 E-value=2 Score=26.94 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.+|+.++++|-.++.+|.+|..+|+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555666666666666655555543
No 111
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=84.17 E-value=2.3 Score=33.42 Aligned_cols=41 Identities=5% Similarity=0.081 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
..|.+.+.+|..++.+|+.-...|...++.+++.+..-...
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~ 138 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANAT 138 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455555555566666555556666666666655544333
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.13 E-value=6.2 Score=35.68 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..++++.+.+......+....+.+.|++|+.+++.+++.+..++...
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 33444444455556666677777888888888888888888877654
No 113
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=83.93 E-value=11 Score=29.12 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei 128 (214)
+++|+..+..|..+++.++.+.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444443
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.90 E-value=12 Score=29.44 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.++++|.-|+..|.++.....+++|+|..+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 4445555555555555555555666666555443
No 115
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=83.87 E-value=2.8 Score=37.73 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.=++.|..++.+|+.......++|+.|+..+..++...+.|+.++..|+..+.
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666777776666666666666666666665443
No 116
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.87 E-value=11 Score=27.80 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.+++.+.+..|..++.+.++.... +..|..|+++|+.+++.
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~r-------n~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEAR-------NRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 44444455555555444
No 117
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=83.85 E-value=3 Score=28.47 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+++++..+..|+.+...++.++.....+..+|.+=|..|..||.--..-|
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34677788888888888888888888899999999999988887654433
No 118
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.33 E-value=12 Score=27.87 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
.|++-..+++.++..++..+.++..++..|...+..+.++.
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544444444443
No 119
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.13 E-value=3.4 Score=29.88 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 114 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.+|+.......++++.....+.+|..+......++..|+.+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555555553
No 120
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=83.05 E-value=5.4 Score=36.56 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 73 ERLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 73 dkLN~~F~~LrslL-PP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
..|++-|..|..+- -|. .-.-+..+|..|-.....++.--+.|+.....+..+|+..-.++|.|-.+.+.|..+|-+
T Consensus 44 ~~l~~ff~alq~la~~P~--~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~ 121 (463)
T 2d4y_A 44 GSLQSFFTSLQTLVSNAE--DPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISR 121 (463)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899998888 222 235678899999988888888888888877778888888888888887777777766654
Q ss_pred H
Q 028060 152 L 152 (214)
Q Consensus 152 L 152 (214)
.
T Consensus 122 ~ 122 (463)
T 2d4y_A 122 M 122 (463)
T ss_dssp H
T ss_pred h
Confidence 3
No 121
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.74 E-value=12 Score=27.60 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~ 144 (214)
.|++-..+++.++..++..+..+.+++..|...+.-+.++...
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666655555555555555555544444433
No 122
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.70 E-value=12 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 137 ELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.+..||..|+.+++.|+.|+..
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHh
Confidence 4667777888888888777654
No 123
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=82.64 E-value=2.5 Score=26.30 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQ 125 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~ 125 (214)
||+.+|++|-.+|..|+
T Consensus 4 QLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 44444444433333333
No 124
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.54 E-value=7.8 Score=32.87 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 141 EKLILKADKEKLEQQ 155 (214)
Q Consensus 141 Ek~~Lk~e~e~L~~q 155 (214)
|...++.++..|+.+
T Consensus 98 Eie~~~~~i~~lE~e 112 (256)
T 3na7_A 98 EEDIAKERSNQANRE 112 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 125
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=82.47 E-value=6.5 Score=26.60 Aligned_cols=35 Identities=6% Similarity=0.287 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
|.+|-.+|+.|..+..+|..++..|+.+...-.+|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544444444433333
No 126
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=82.25 E-value=5 Score=26.92 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.++.+|++.|..|-.++. +|...-..+.+||++|..-|+.
T Consensus 4 q~l~kLKe~n~~L~~kv~-------~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQ-------HLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHccHHHHHHHHHHHHHHH
Confidence 355667777776655554 4444445556788888777764
No 127
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.11 E-value=5.2 Score=28.89 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.|+.....|+.++.....-+.+|-+.......+|++|+.+++.+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555554
No 128
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.01 E-value=10 Score=29.30 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKA-----------EKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~-----------eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.+.-+-|..|+.+++.++..+..|+..+.++.. .+.+|..+...++.+.++.-+++
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666665555555554443333 33344444444554444443333
No 129
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.90 E-value=9.5 Score=27.89 Aligned_cols=51 Identities=31% Similarity=0.388 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKL-------QEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L-------~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|..|-.+..+|......| -.++++|.-|+.-|+.|...+++-+.+++..++
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333 334444444444444444444444444444433
No 130
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=81.68 E-value=2.4 Score=26.42 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
|.....||..+|..|+.|++||..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445555555555666666554
No 131
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.65 E-value=11 Score=28.06 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSL 131 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL 131 (214)
.-|..|..+...+..+...++.+...|
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 132
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=81.44 E-value=3.7 Score=30.05 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
...|+.+...+..++++|+.++..|+.+++.|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555556666666666555544
No 133
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=81.44 E-value=3 Score=25.98 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 124 LQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 124 L~~ei~eL~~eknELr~Ek~ 143 (214)
|+.++++|..++.+|.+|..
T Consensus 5 LEdKVEell~~~~~le~EV~ 24 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 33444444444444443333
No 134
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=81.26 E-value=3.1 Score=25.89 Aligned_cols=25 Identities=4% Similarity=0.181 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.+|+.++++|-.++.+|.+|..+||
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3555666666666666655555554
No 135
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=81.05 E-value=11 Score=27.01 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
|...++.|..+++.|..+++.+..+...+++|-....+.+..|+.+|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444444333333443333
No 136
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=80.89 E-value=3.2 Score=26.00 Aligned_cols=18 Identities=6% Similarity=-0.056 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQ 125 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~ 125 (214)
+||+.+|++|-.++..|+
T Consensus 4 nQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHH
Confidence 344444444333333333
No 137
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.65 E-value=15 Score=26.98 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAM 161 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~ 161 (214)
..|...++.+..++..|......+..+.+.|+.+|..+-.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555555555556666666666666533
No 138
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.56 E-value=5.4 Score=36.98 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNE-KLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~-~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
|..+|+.++.-|++... ++. .|+.|+.-+.+++.+.++|...|
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554432 233 55555555556666666665433
No 139
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=80.45 E-value=3.2 Score=26.27 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.+|+.++++|..++.+|.+|-.+|+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555555555555555444443
No 140
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=80.33 E-value=15 Score=33.53 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhhcC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHH
Q 028060 71 RRERLNDRFLDLSCILE-PGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSL-KAE-KNELREEKLILKA 147 (214)
Q Consensus 71 RRdkLN~~F~~LrslLP-P~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL-~~e-knELr~Ek~~Lk~ 147 (214)
|=+.+.++|.+|...+- |+.....+++.-|.+-...|+.+-.....++...+.+.+-.+-+ -.+ +.+..+|...|+.
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33567789999998772 32222334444444443333333333333333333332211111 122 2345778888999
Q ss_pred HHHHHHHHHHHhcCC
Q 028060 148 DKEKLEQQLKVMAMP 162 (214)
Q Consensus 148 e~e~L~~qlk~~~~~ 162 (214)
+++.|+.+|+.+-.|
T Consensus 84 ~~~~le~~l~~lLlp 98 (354)
T 3d5a_X 84 RKEALEKELERHLLP 98 (354)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999887444
No 141
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=80.11 E-value=8.9 Score=32.42 Aligned_cols=49 Identities=24% Similarity=0.213 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+++..+-..+..++.++..|.++...|..+.++|..+...+-.+++.+|
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443333
No 142
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.00 E-value=3.7 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLK 132 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~ 132 (214)
++||+.+|++|-.++..|+.|+..|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35666666666666666666555544
No 143
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=79.94 E-value=6.4 Score=25.71 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
...|+.+.++|....+||.+..+.|+.|..-|.|-++
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3455566666666666666666666666666655443
No 144
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.85 E-value=14 Score=26.30 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
|.+-+.+++..+...+.....+.+++..|...+..|.++...++......+..|
T Consensus 18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 18 ALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555554444444444443
No 145
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=79.34 E-value=2.9 Score=32.85 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 028060 104 IRVLNQLRTE 113 (214)
Q Consensus 104 I~yIk~Lr~~ 113 (214)
++|+.+.+..
T Consensus 6 ~~~~~~~~~~ 15 (171)
T 2zvf_A 6 IEAVEEMERL 15 (171)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3343333333
No 146
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=79.23 E-value=3.9 Score=25.57 Aligned_cols=25 Identities=4% Similarity=0.193 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.+|+.++++|-.++.+|.+|..+||
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4556666666666666665555554
No 147
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=79.02 E-value=16 Score=26.61 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+-+.+++.|+.....|..-...|..-+++|..|...|...++.|+...+.+
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555666666667777777777777776655544
No 148
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=79.00 E-value=2.5 Score=36.44 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-||+--|.|++.-+++.... +++..+.+++..+.+.|+.|+..+++++++|++++...
T Consensus 124 ~iLSalINF~~FRE~~~~~~----~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~ 181 (250)
T 2ve7_C 124 RFLSGIINFIHFREACRETY----MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDED 181 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHTTHHHHHHHHHHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 48888888888665555443 33444555566666666666666777777776666553
No 149
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=78.98 E-value=4.5 Score=24.68 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 129 KSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
..|++|+..|..|...||-|+.-|.|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444444443
No 150
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=78.89 E-value=2.8 Score=26.26 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei 128 (214)
+||+.++++|-.+|..|+.|+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 444444444444444444443
No 151
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=78.83 E-value=10 Score=25.40 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIK 129 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~ 129 (214)
+|+.|+.....+..||.
T Consensus 19 kv~~Le~~c~~~eQEie 35 (48)
T 3vmx_A 19 KIQHLEFSCSEKEQEIE 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHH
Confidence 34444444444443333
No 152
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.62 E-value=2.3 Score=41.05 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+|+..|.+|+.+++..-..+..|+.-++++
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665444444444433333
No 153
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=78.57 E-value=9.9 Score=27.38 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
+.+++..+..|+.+...++.++.....+..+|-+=|..|..||.-
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIat 72 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555555566666655556666666666666666544
No 154
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=78.53 E-value=5.2 Score=35.98 Aligned_cols=47 Identities=26% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.+++|.++..+|+..+.....++..|+.....+++.+.+|++++..
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555444
No 155
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=78.50 E-value=9.6 Score=24.75 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
+++|+.-+|+|++.|.+|..--+.|+-.+.||.=|.
T Consensus 5 vkelknyiqeleernaelknlkehlkfakaelefel 40 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAELEFEL 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHH
Confidence 455666666666666555544445555555554443
No 156
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=78.25 E-value=5 Score=27.80 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 111 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 111 r~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+.++.+|++.|.+|-.++.+|+...+ ...+||+||..-|+.-
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~-------e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCS-------EKEQEIERLNKLLRQH 51 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHc
Confidence 34566777778777776666555444 4556777877777653
No 157
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=78.14 E-value=1.1 Score=38.55 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 118 KETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 118 ~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.++|++|++|+.+|+.+..++ ..|++|.++|+..|..
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~----~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEV----ADLKKENKDLKESLDI 61 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 334444444444444333332 3455566666665553
No 158
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=78.09 E-value=11 Score=28.00 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQE-LK---ETNEKLQEEIKSLKAEKNELREEKLILKA 147 (214)
Q Consensus 105 ~yIk~Lr~~vq~-L~---~~n~~L~~ei~eL~~eknELr~Ek~~Lk~ 147 (214)
.|=+.|-++.+. |. ++|+.|..++..|..|++.|+.++..|+.
T Consensus 28 ~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 28 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666544332 22 35666666555555555555555555543
No 159
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=77.97 E-value=8.7 Score=28.44 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSL 131 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL 131 (214)
|.+|++--++|..++..|+.++..|+++.++|
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555444444444333
No 160
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=77.94 E-value=3 Score=26.15 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei 128 (214)
+||+.+|++|-.+|..|+.++
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444444333
No 161
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=77.87 E-value=18 Score=26.42 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+-.+++.|-.+|.+|.+--..|..-+|.|=.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~ 37 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIA 37 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666554444444443333
No 162
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=77.78 E-value=16 Score=32.72 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHH
Q 028060 67 REKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTES-------QELKETN-EKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 67 ~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~v-------q~L~~~n-~~L~~ei~eL~~eknEL 138 (214)
.-|++++.|+..+..|.+..| +-..|-.-+..|+++. +.+...+ ..|..+ ++++.++.++
T Consensus 21 ~lr~~~eql~~~i~~L~~~ap-----------~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~ 88 (302)
T 3ibp_A 21 ALRQEQEQLQSRIQSLMQRAP-----------VWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEV 88 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCh-----------HHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 346667777777777777663 3334445555555543 3443333 444444 7778888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 028060 139 REEKLILKADKEKLEQ 154 (214)
Q Consensus 139 r~Ek~~Lk~e~e~L~~ 154 (214)
-.++..|..+|++|.+
T Consensus 89 a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 89 GARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcC
Confidence 7777888888887654
No 163
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.73 E-value=3.5 Score=31.84 Aligned_cols=76 Identities=11% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 028060 76 NDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK----LILKADKEK 151 (214)
Q Consensus 76 N~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek----~~Lk~e~e~ 151 (214)
+.+|.+|...+.. . ..-|..+-.-|.+|+..++.|+.+.+.++.....|...+.++...- ..++..+..
T Consensus 14 ~~K~eel~~~~~~-----~--~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~ 86 (129)
T 3tnu_B 14 QTKYEELQQTAGR-----H--GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAE 86 (129)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665521 1 1234556677889999999999999999888888888888765433 345566666
Q ss_pred HHHHHHH
Q 028060 152 LEQQLKV 158 (214)
Q Consensus 152 L~~qlk~ 158 (214)
|+.+|..
T Consensus 87 lE~eL~~ 93 (129)
T 3tnu_B 87 LEEALQK 93 (129)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 6666654
No 164
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=77.64 E-value=18 Score=26.31 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 136 NELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 136 nELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+..+....|.+.+-.|+.+++.+
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666666654
No 165
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=77.38 E-value=13 Score=31.91 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=51.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.+...|..-....++.++++...|..+.+++++|+..+.+.+.+-|...+.++.+.+++--++
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 566777777788888999999999999999999998888888888888888887777765443
No 166
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=77.35 E-value=21 Score=27.08 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+.|-+.+.+-+.++..-......|.+.++.-++.-.+...+...|+.||..|.++|+..
T Consensus 28 T~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 28 TRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333333333333344444333333332223334455666666666666553
No 167
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=77.24 E-value=5.7 Score=24.21 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSL 131 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL 131 (214)
.+|++++.+.+.+|-+|..++.+|
T Consensus 4 aqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455555555555555555444443
No 168
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=77.24 E-value=8.9 Score=28.10 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 119 ETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 119 ~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
++|..|..+|..+..+++.|++|+..|+.=.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777776665333
No 169
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=77.22 E-value=12 Score=26.77 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
..+++..+..|+.+...++.++.....|..+|-+=|..|..||.--..-|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777777888888888888888887655433
No 170
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=77.20 E-value=11 Score=26.15 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKADKE 150 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~e 150 (214)
.+.|+.|||...+.|..|++
T Consensus 54 ~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 171
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.02 E-value=7.7 Score=27.89 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKA 147 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~ 147 (214)
|..++..|+.++..|++
T Consensus 59 l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 59 AVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 172
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=76.86 E-value=13 Score=29.26 Aligned_cols=15 Identities=20% Similarity=0.497 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 114 SQELKETNEKLQEEI 128 (214)
Q Consensus 114 vq~L~~~n~~L~~ei 128 (214)
++.|+..|..|+.+.
T Consensus 59 ~~~Le~~n~~L~~~l 73 (155)
T 2oto_A 59 KQALEDQRKDLETKL 73 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 173
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.84 E-value=8.4 Score=39.54 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHH
Q 028060 64 KACREKLRRERLN 76 (214)
Q Consensus 64 H~~~ERkRRdkLN 76 (214)
....|..|.++++
T Consensus 780 l~~LE~~r~~~l~ 792 (1184)
T 1i84_S 780 LAHLEEERDLKIT 792 (1184)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544433
No 174
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.47 E-value=18 Score=25.71 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 137 ELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~qlk 157 (214)
.|......|..+.++.+.+|.
T Consensus 45 ~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 45 ALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443
No 175
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=76.41 E-value=12 Score=27.39 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
|.+|.+--.+|+.++.+++.+...|+++.+.|+.-.++.
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566677777766666666666665554444433
No 176
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=76.27 E-value=13 Score=35.13 Aligned_cols=52 Identities=33% Similarity=0.542 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIK------------------SLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~------------------eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
-++|+.+++.|+.+...+..+|. +|+.+..+|+++...|+.+...++.++..
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666555444444444 44455555555555566666666666655
No 177
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=75.95 E-value=3.7 Score=25.73 Aligned_cols=21 Identities=5% Similarity=0.248 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~L 145 (214)
+.++++|-.++.+|.+|..+|
T Consensus 7 EdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHH
Confidence 333333344444444433333
No 178
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.91 E-value=14 Score=26.96 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETN 121 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n 121 (214)
+.+..+..++..|+...
T Consensus 14 eEm~~~eeel~~lke~l 30 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDL 30 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 179
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=75.67 E-value=9.2 Score=32.66 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh-cCCCCCCCC
Q 028060 105 RVLNQLRTESQE----LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ---LKVM-AMPTGGYMP 168 (214)
Q Consensus 105 ~yIk~Lr~~vq~----L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q---lk~~-~~~p~g~~p 168 (214)
.|=+.|-++.+. --++|+.|..+|..|..|++.|+.|+..|+.=.+.++.- |+.+ ..++..|..
T Consensus 97 ~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~ 168 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFES 168 (209)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 466666544332 235788888888888888888888888887666655542 3332 445444544
No 180
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=75.58 E-value=6.5 Score=32.89 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEE 127 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~e 127 (214)
|+.-+++-+..|+.+++.|+++|+.|+.+
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 181
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.46 E-value=13 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
.+..|+.+...++.++.....+..+|.+=|..|..||
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444443
No 182
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=75.26 E-value=16 Score=24.62 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
.++++|.....+|..++..|..+++.|+.+...-|.|-.|--+-|.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567777888888888888888888888877777777666555443
No 183
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=75.18 E-value=12 Score=27.63 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQE----LKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 105 ~yIk~Lr~~vq~----L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.|=+.|-++.+. --++|+.|..++..+..|++.|+.|+..|+
T Consensus 20 ~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 20 QYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555443322 224667777777766666666666666664
No 184
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=74.80 E-value=23 Score=27.51 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 114 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
.+-|+...+.|++++++|...+..|.......+..+...+.++...|
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 129 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFN 129 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 33445555555666666666666665555555555555555555443
No 185
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.73 E-value=21 Score=27.30 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 111 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 111 r~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.=+|+-|+...+.+++...+++++..|...+...+|..+..|+.++..+
T Consensus 29 ~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 29 MYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666666777777777777777777777777777777777776654
No 186
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=74.62 E-value=4.1 Score=25.78 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
+|..++++|-.++.+|.+|..+|+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555555555555444444
No 187
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=74.37 E-value=5.8 Score=24.84 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
.+|+.++++|-.++.+|.+|..+||
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3555666666666666666555554
No 188
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.23 E-value=24 Score=26.17 Aligned_cols=13 Identities=8% Similarity=0.291 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 028060 119 ETNEKLQEEIKSL 131 (214)
Q Consensus 119 ~~n~~L~~ei~eL 131 (214)
.+...|+..+..|
T Consensus 44 ~Ei~sL~kk~~~l 56 (101)
T 3u1c_A 44 DDIVQLEKQLRVT 56 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 189
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=74.02 E-value=22 Score=25.66 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+.+++..+..|+.+...++.++.....+..+|-+=|..|..||.--.
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44556666667777777777777777777777777777777776543
No 190
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.51 E-value=26 Score=31.33 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 135 KNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+.||..|...|.++++.++.|++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 191
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=73.18 E-value=15 Score=25.75 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
++.....-+.+|++|-.-.|.|.+|...|+.++.+|+.+
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 344445556778888888888888888888888888765
No 192
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=73.06 E-value=23 Score=25.39 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 128 IKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
++.+...+..|..+...++++.++.-++++
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666666555544444
No 193
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=72.94 E-value=4.6 Score=25.29 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKA 133 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~ 133 (214)
++||+.+|++|-.++..|+.|+..|+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 456777777777777766666655543
No 194
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.87 E-value=29 Score=32.69 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
.|.++.++|+.++.+|..+...++.++..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544444444433
No 195
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=72.81 E-value=34 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 129 KSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.++..++..|+=.-.+|.++++-|++-|..+
T Consensus 362 ~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 392 (406)
T 4dyl_A 362 QEALQGLQVALCSQAKLQAQQELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4556677777777788889999999888876
No 196
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=72.75 E-value=6.7 Score=28.00 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 134 EKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 134 eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
++.+|+-++..||-+|.++-.+.
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~~~ 67 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMIIEY 67 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 45556666666666666655443
No 197
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=72.74 E-value=35 Score=28.26 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=27.6
Q ss_pred HHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 77 DRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEK 123 (214)
Q Consensus 77 ~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~ 123 (214)
+.+..|+..+.-|. -+||.-+.. .||+=|+.+...++.....
T Consensus 55 ~k~~qlre~~d~gt--t~~~i~~m~---~yI~llrErea~lEqkVae 96 (169)
T 3k29_A 55 QKIRQLREQLDDGT--TSDAILKMK---AYIKVVAIQLSEEEEKVNK 96 (169)
T ss_dssp HHHHHHHHHHHHCC--CHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CcHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45788999996553 456555544 5777777777777655443
No 198
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.42 E-value=11 Score=34.61 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-+.+|++++++|+++++++++++++++.++.+...+.-.|..++..|...++..
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456788888888889999999998888888877777777888887776655553
No 199
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=72.33 E-value=23 Score=25.76 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..+..++..|+..+.++---+..|..+++-|..++.-+
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666556666777777777766543
No 200
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=71.76 E-value=11 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
..++.+++..+..|..|..+++.|+.+..+|+.+
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344555566667777777777777777766543
No 201
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=71.60 E-value=37 Score=32.01 Aligned_cols=53 Identities=28% Similarity=0.359 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 107 LNQLRTESQELKETNEKLQEEI----------KSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei----------~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-++|+.++++|+.+...+..+| .+|..+..+|+++...|+.+...++.++..+
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666655555555444 3455666677777777777777777777653
No 202
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.53 E-value=30 Score=39.86 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=29.1
Q ss_pred HHHHHhhhcCCCCCCCCChhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 78 RFLDLSCILEPGRPARTDKPAIL----DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 78 ~F~~LrslLPP~~~~K~DKasIL----~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
.=.+|....|. . +|..+.+.+ ..|-+-+..+++++++++++.+.|+++-+++..|+.+|++|.
T Consensus 1999 ~e~dL~~A~Pa-~-Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 1999 AYADLEKAEPT-G-PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666643 2 455554433 344445555555555555555555555555555555555444
No 203
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.31 E-value=15 Score=26.97 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=30.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
..+-|..+--+.+..|..+.+.++...+.|..++.++..+.++++....
T Consensus 60 G~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 60 GTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555666667777777777777777666666666666655443
No 204
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=70.90 E-value=12 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 124 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 124 L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+..++.++..++.+|+.+...++++++.++..+..+.
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455555566666666666666666666666553
No 205
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=70.54 E-value=2 Score=37.03 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=38.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-++..+..+.+.-..++..++++|..++..++.+++.|+.++.+...+..-.+.....|...+..+
T Consensus 137 E~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i 202 (250)
T 2ve7_C 137 EACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKI 202 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhc
Confidence 377777777777777788888888888777777777777776666555544455666666666664
No 206
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.40 E-value=16 Score=33.25 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+-|..|+++..+|+++++.++.++++|+.+..+...+.-.|..++..|...++..
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4567888999999999999999999999888887777778888887777666654
No 207
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=70.37 E-value=8.2 Score=24.14 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
+|..++++|-.++.+|.+|-.+|+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555555555555444443
No 208
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=70.01 E-value=17 Score=26.18 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 111 RTESQELKETNEKLQEEIKSLKAEK 135 (214)
Q Consensus 111 r~~vq~L~~~n~~L~~ei~eL~~ek 135 (214)
+.+++.|...++.|..++..|..++
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 209
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=69.81 E-value=2.1 Score=36.81 Aligned_cols=46 Identities=33% Similarity=0.331 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
.+.+..+..|+++.++|++++..|+.+. .+..+|+.|+.+|+..+.
T Consensus 15 ~~~~~~~~~l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 15 VDGVVDLKNTYTENQHLKERLEELAQLE----SEVADLKKENKDLKESLD 60 (255)
T ss_dssp -----------CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 3445556667778888888887777654 455566667777665433
No 210
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=69.79 E-value=23 Score=26.18 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKS 130 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~e 130 (214)
|.+|.+--.+|+..+.+++.+...|+++.++
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666655555555554433
No 211
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.63 E-value=8.5 Score=32.46 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
..|..|..++..|..+++....||+.|+.++..++...
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566666666666555555555555555555544443
No 212
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=69.54 E-value=26 Score=25.09 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
.|...++.|..+++.|...++.+..+...++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655555555555444
No 213
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.54 E-value=76 Score=29.87 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELK 118 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~ 118 (214)
.|.+||+.|+......+
T Consensus 118 ~~~~~i~~Iq~slk~~Q 134 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKTQ 134 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccc
Confidence 45556665555544443
No 214
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=69.53 E-value=11 Score=22.96 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 111 RTESQELKETNEKLQ 125 (214)
Q Consensus 111 r~~vq~L~~~n~~L~ 125 (214)
+.++..|+++...|.
T Consensus 8 kqeiaalkkeiaalk 22 (33)
T 4dzn_A 8 KQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 215
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.48 E-value=21 Score=30.01 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
.-+.-+..|..+++....+++.|++++..|+.......+..+
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 344445556666666666666666666666666655444443
No 216
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=69.46 E-value=46 Score=30.80 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 107 LNQLRTESQELKETNEKLQEEIK----------SLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~----------eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-++|+.+++.|+.+...+..+|. +|+.+..+|+++...|+.+...++.++..+
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555555554 455666666666667777777777777663
No 217
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=69.45 E-value=26 Score=32.47 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
-|..|-++..++..+.+.|+.+...+..+
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~ 60 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVE 60 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 218
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.41 E-value=31 Score=25.38 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEK 135 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~ek 135 (214)
++.+...|+..+..|..++
T Consensus 42 ~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 219
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=69.21 E-value=6.4 Score=29.70 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELK--ETNEKLQEEIK-SLKAEKNELREEKLILKA--DKEKLEQQLKV 158 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~--~~n~~L~~ei~-eL~~eknELr~Ek~~Lk~--e~e~L~~qlk~ 158 (214)
|+.....-|++|+..+.+|- ....+|+..++ +|....+.|..+...|-. ++|||-.++..
T Consensus 11 li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~ 75 (97)
T 1hs7_A 11 LIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKN 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 33444444444444444442 22345555565 555666666555554433 56666555544
No 220
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=68.87 E-value=24 Score=26.10 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.+++..-+.++.+|.++..+.+.-|..|
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444433
No 221
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=68.85 E-value=19 Score=30.64 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk 146 (214)
++-++.++||+.+.-..-++...|+..+.+|.+|+++|+.....|+
T Consensus 26 ~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 26 SERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 4556777778777777666666777777666666666666555554
No 222
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=68.71 E-value=5.4 Score=26.96 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei 128 (214)
.|+.++....+.|..+|..|++++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKV 50 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 223
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=68.49 E-value=56 Score=30.32 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=43.7
Q ss_pred HHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 77 DRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 77 ~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+.+..|+..+.+...++.+ -...+++|-+.+.+++.+++..+......|++|+...+-.+.....|+..+..|+
T Consensus 59 ~~v~~ik~~~~~~q~~~~~---n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 59 QLIKAIQLTYNPDESSKPN---MIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHCTTTCCCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCCCCc---chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555443322233 2556778888777788888777777677777777766555554444444444333
No 224
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=68.21 E-value=28 Score=32.89 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
.|.++.++|+.++.+|.++...++.++..
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555555543
No 225
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=68.21 E-value=61 Score=29.55 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 106 VLNQLRTESQELKETNEKLQE--------EIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~--------ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
--++|+.+++.|+.+...+.. +..+|+.+..+|+++...|+.+...++.++...
T Consensus 36 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 36 EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655544443 345677777777787788888888888888763
No 226
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.02 E-value=24 Score=26.60 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 028060 143 LILKADKEKLEQQLKVMA 160 (214)
Q Consensus 143 ~~Lk~e~e~L~~qlk~~~ 160 (214)
.++..+++.|+.++..+.
T Consensus 64 Ekl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 64 EKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHTTSHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 455666666666666543
No 227
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.56 E-value=11 Score=27.44 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~ 144 (214)
+..-|+.++.+.+.|+.....|+..+.+-+.+-+.++.|...
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777776666666655555543
No 228
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=67.43 E-value=17 Score=25.09 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
++|=+-+..|+....+|-.....|+..-.+..+|
T Consensus 7 tRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQE 40 (58)
T 3a2a_A 7 TRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQE 40 (58)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444443333333333
No 229
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=67.02 E-value=11 Score=23.48 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 124 LQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 124 L~~ei~eL~~eknELr~Ek~~L 145 (214)
|..++++|-.++.+|.+|..+|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3333344444444444433333
No 230
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=66.82 E-value=3.9 Score=27.41 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei 128 (214)
.||.+|+.+++.|+..+..|+..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888777776544
No 231
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=66.64 E-value=24 Score=26.66 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028060 137 ELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+..|+..|+.++..|+.|+..+
T Consensus 65 kl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 65 KLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666555444
No 232
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=66.56 E-value=29 Score=26.16 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
+.+|++|+ ..+++.|+...+.|+..+..++.+.+.+.++
T Consensus 86 ~~eA~~~l---~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 86 FEDAMESI---KSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666664 4455555555555555555555544444443
No 233
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=66.42 E-value=23 Score=24.53 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 136 NELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 136 nELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
...+.|...|+..+..|+-+|.++
T Consensus 52 ~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 52 RQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555566666666666666543
No 234
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.34 E-value=9.5 Score=35.14 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+....+++|+.+.+-|+.+++.++ .+.+.++.|...++.|+++|+
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~-------~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIK-------DEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHc
Confidence 333444455555555555444444 444445444445555555554
No 235
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=65.92 E-value=32 Score=32.68 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 028060 64 KACREKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKE----TNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 64 H~~~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~----~n~~L~~ei~eL~~eknE 137 (214)
.-...+..| .++.++.+|+..|......-.+=-.......+++++-+++++..+. ..+.|+..|.+|+..+++
T Consensus 53 qglL~kqer-dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~ 129 (491)
T 1m1j_A 53 QGIIDDTDQ-NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVAT 129 (491)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhh-hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 3455677777777331111122223444555555555554444432 234555555555555544
No 236
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=65.68 E-value=13 Score=23.20 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLK 132 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~ 132 (214)
++||..++++|-.++..|+.|+..|+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666666665555555554443
No 237
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=65.56 E-value=37 Score=24.77 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQE 126 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ 126 (214)
...+.++..+..+...|..
T Consensus 67 ~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 238
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=65.29 E-value=27 Score=27.73 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhh
Q 028060 74 RLNDRFLDLSCI 85 (214)
Q Consensus 74 kLN~~F~~Lrsl 85 (214)
+|+||+.+|+..
T Consensus 6 ~mkDRl~eL~~~ 17 (180)
T 1s94_A 6 RTKDRLAALKAA 17 (180)
T ss_dssp ------------
T ss_pred chhHHHHHHhcc
Confidence 456777777764
No 239
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=65.26 E-value=13 Score=30.99 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=30.8
Q ss_pred CChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIR-VLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 94 ~DKasIL~dAI~-yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
..|+.=-.++|. +|..|-..++.|+.+|..|+.+.+.|+.|-|+..+
T Consensus 133 L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 133 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443334444 77778888888888888877777777776665433
No 240
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.22 E-value=40 Score=30.12 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028060 143 LILKADKEKLEQQLKVM 159 (214)
Q Consensus 143 ~~Lk~e~e~L~~qlk~~ 159 (214)
..|..|+-+|.++|+..
T Consensus 446 ~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555543
No 241
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=65.13 E-value=15 Score=26.59 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.|.-|+++...-+.+...|++.+.--......|-||.-.|.-|..-|++.|..
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 44455555555555555555554443444444666666666666556555543
No 242
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=65.13 E-value=29 Score=25.72 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
++..+..|+.+...++.++.....+..+|.+=|..|..||..
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555544445555555555566555543
No 243
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=64.83 E-value=51 Score=28.52 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 028060 68 EKLRRERLNDRFLDLSCIL 86 (214)
Q Consensus 68 ERkRRdkLN~~F~~LrslL 86 (214)
+.+|=+.+-.++..+...|
T Consensus 61 ~~~~~~~~~~k~~~~~~~L 79 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVV 79 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHh
Confidence 3333333444455554555
No 244
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=64.44 E-value=37 Score=24.49 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKAD 148 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e 148 (214)
.-|.+|++.+.---+..+.|..|+=.|..|-|=|++..+.|++|
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 44555655554333445677777777777877777777766654
No 245
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=64.34 E-value=26 Score=32.10 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhc
Q 028060 71 RRERLNDRFLDLSCIL 86 (214)
Q Consensus 71 RRdkLN~~F~~LrslL 86 (214)
.-+.+.++|.+|...+
T Consensus 26 ~l~~~~~r~~el~~~~ 41 (365)
T 1gqe_A 26 DYDAKKERLEEVNAEL 41 (365)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3456677888887766
No 246
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=63.95 E-value=6.2 Score=26.66 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 137 ELREEKLILKADKEKLE 153 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~ 153 (214)
.|..|+..|+.++++|+
T Consensus 38 ~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 38 IVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444333
No 247
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=63.67 E-value=40 Score=24.55 Aligned_cols=62 Identities=13% Similarity=0.276 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 72 RERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 72 RdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
-..+|+++.+++...+ . -..+|.+||. |+..-.+|....++.......+.+++..|...+.+
T Consensus 32 A~~vd~~~~~i~~~~~--~-~~~~r~~vma-ALnladel~~~~~~~~~~~~~~~~~i~~L~~~le~ 93 (104)
T 1t3u_A 32 ARYLDGKMREIRSSGK--V-IGADRVAVMA-ALNITHDLLHRKERLDQESSSTRERVRELLDRVDR 93 (104)
T ss_dssp HHHHHHHHHHHHTTTC--S-CSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--C-CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999873 2 2356665543 45555544444333333344444444444444443
No 248
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=63.47 E-value=47 Score=25.29 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 131 LKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|..|+-+|......-+-||..|..++..+
T Consensus 61 lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 61 LQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 33344444444444445555555566555
No 249
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=63.15 E-value=7.6 Score=23.37 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
+|..-...|+.+|.+|..++++|-+.
T Consensus 3 qlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666665555443
No 250
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.72 E-value=25 Score=28.05 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 028060 141 EKLILKADKEKLEQ 154 (214)
Q Consensus 141 Ek~~Lk~e~e~L~~ 154 (214)
++..+.+|+|.|-.
T Consensus 68 ~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 68 EADKLNKEVEDLTA 81 (135)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 251
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=62.66 E-value=22 Score=25.63 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=27.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
..+-|..+--+.+..|..+.+.++...+.|..++.++..+.++++.
T Consensus 55 G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 55 GNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555666666666666666666666666666666555544
No 252
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=62.66 E-value=33 Score=29.21 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKA 133 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ 133 (214)
-|.+|++--++|+.++..|++++..|+++..+|+.
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777887777777777777766655544
No 253
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=62.53 E-value=31 Score=23.43 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
++|-.+++.|+.|..-||.|...=-.++.+|+.+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 4455555555555555555554444445555443
No 254
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=62.40 E-value=13 Score=32.77 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+++.|+.+++.|++|+++|+.+++.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5666666666666666666555555444
No 255
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=62.05 E-value=51 Score=25.18 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKA 147 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~ 147 (214)
-+|.++|.+.+. .+.++..|+.++.+|+..+++......|+-.+++.|+.
T Consensus 4 ~e~~~~~~~~~~----~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~ 53 (125)
T 1joc_A 4 DERRALLERCLK----GEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQI 53 (125)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 345555555443 34455566666666666555555555566555555543
No 256
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.52 E-value=45 Score=24.47 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.|-.+...|+-.+.+|..|+.+..-..-..|.|+.-|++||..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444445555555544433334455666667776654
No 257
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=61.31 E-value=45 Score=27.29 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 126 EEIKSLKAEKNELREEK 142 (214)
Q Consensus 126 ~ei~eL~~eknELr~Ek 142 (214)
++|+.|..|+.+||.+.
T Consensus 113 akI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 113 AKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666665543
No 258
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.09 E-value=32 Score=39.63 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
...|++++..|+.+.++...|+..|+.+.+..+
T Consensus 2037 L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2037 ITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544433
No 259
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=60.70 E-value=32 Score=31.44 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEK--------NELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ek--------nELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+-|..|-.+..++..+.+.|+.+...+..++ .+|..+...|+.++..|+.+++.+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555544444332 234444444455555555554443
No 260
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=60.57 E-value=22 Score=27.36 Aligned_cols=47 Identities=30% Similarity=0.311 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKL----ILKADKEKLEQQLK 157 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~----~Lk~e~e~L~~qlk 157 (214)
|++++.+.+.+...|..++.+|+.....|..|.. +| .+||-|=|...
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL-RdIEiLcQe~~ 59 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL-RDIEILVHTTQ 59 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444444444444444444444443332 22 34555555443
No 261
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=60.56 E-value=48 Score=25.22 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 130 SLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 130 eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.|..|+-+|......-+-||..|..++..+
T Consensus 60 ~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 60 NLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 333444444444444444555555555544
No 262
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.46 E-value=39 Score=24.23 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEI 128 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei 128 (214)
+..|..++.+|+.+...|+.++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444
No 263
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=60.39 E-value=30 Score=26.13 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
.+|....++++.+...|..++..|+....++
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~ 34 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 264
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=60.27 E-value=0.29 Score=37.91 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 127 EIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 127 ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
++.+|..++..|..+...|+.|...|..++
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~ 88 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLEL 88 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 265
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=60.15 E-value=28 Score=28.77 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.|......|+..+..|..++++|..+...|+..+.+++
T Consensus 53 ~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~ 90 (174)
T 2p22_A 53 IIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ 90 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444433
No 266
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=59.92 E-value=14 Score=28.29 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 114 SQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
.+++.++++.|++++..|..|++.+
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444443
No 267
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=59.78 E-value=16 Score=22.25 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
|..|..+...|+..|.+|...|++
T Consensus 6 lekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444444455555555555554
No 268
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.54 E-value=10 Score=35.11 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028060 122 EKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPT 163 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p 163 (214)
..|+.+++.|+.|...+..|+..++.++..++.+++....+|
T Consensus 35 ~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p 76 (434)
T 4b4t_M 35 KLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLP 76 (434)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 334444555555555555555555556666666665554443
No 269
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=59.23 E-value=18 Score=22.64 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 120 TNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr 139 (214)
+|...+.+|++|+.+.+-|+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le 27 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLE 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHH
Confidence 33444444444444444333
No 270
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=58.05 E-value=72 Score=25.66 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=38.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKS-------------LKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~e-------------L~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..|..++..--.-|.+|..+.++|+-+...+..+++. +..-......|++.+...+..|.+|++.+
T Consensus 25 ~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 25 TWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677666677777777777777655544444332 11112334456666666677777666664
No 271
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=57.58 E-value=63 Score=24.89 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 028060 110 LRTESQEL 117 (214)
Q Consensus 110 Lr~~vq~L 117 (214)
|+.+..+|
T Consensus 11 lq~~~~ql 18 (112)
T 1x79_B 11 LQLMLRQA 18 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 272
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=57.23 E-value=25 Score=30.54 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCC
Q 028060 65 ACREKLRRERLNDRFLDLSCILEP 88 (214)
Q Consensus 65 ~~~ERkRRdkLN~~F~~LrslLPP 88 (214)
.+.|..+ +++..+..|....|+
T Consensus 64 ~~~~~~~--k~~~~~~~L~~~~~~ 85 (357)
T 3rrk_A 64 RWEAVVS--QAEQSLTVVGLATVP 85 (357)
T ss_dssp HHHHHHH--HHHHHHHHHTCCCCC
T ss_pred HHHHHHH--HHHHHHHHhcccccc
Confidence 3444443 467777788877644
No 273
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=56.95 E-value=27 Score=27.13 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
+.+|++|++ .+++.|+...+.|.. ...++++....+...+..++++
T Consensus 96 ~~eA~~~l~---~ri~~l~~~l~~l~~-------~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 96 IDEAISFLE---KRLKEYDEAIKKTQG-------ALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHH-------HHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566766654 444444444444444 4444444444455555555553
No 274
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=56.91 E-value=7.7 Score=30.37 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=5.8
Q ss_pred HHHHHHHhhhc
Q 028060 76 NDRFLDLSCIL 86 (214)
Q Consensus 76 N~~F~~LrslL 86 (214)
.+.+.++..+|
T Consensus 13 ~~~l~~~a~~L 23 (171)
T 2zvf_A 13 ERLLREASSIL 23 (171)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 34455555555
No 275
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=56.65 E-value=32 Score=21.76 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknE 137 (214)
+|..+.+.-+++|..|+.+..|
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHH
Confidence 3333333334444444443333
No 276
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=56.37 E-value=53 Score=24.02 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 028060 96 KPAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 96 KasIL~dAI~yIk~Lr~~vq~L~ 118 (214)
|-+.|.++=+.|.+...-+++++
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMe 54 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMD 54 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333333333
No 277
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=56.34 E-value=73 Score=25.44 Aligned_cols=29 Identities=7% Similarity=0.201 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 129 KSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
.+.+...++.+.-..++++-+.+|...++
T Consensus 117 ~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 117 SEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444333
No 278
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=56.31 E-value=39 Score=24.97 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=14.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTESQELKETN 121 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~vq~L~~~n 121 (214)
..|-..|.++-..|.+..+-+++++-+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554443
No 279
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=56.30 E-value=72 Score=26.04 Aligned_cols=12 Identities=17% Similarity=0.091 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 028060 137 ELREEKLILKAD 148 (214)
Q Consensus 137 ELr~Ek~~Lk~e 148 (214)
+|-+|...|+++
T Consensus 117 aL~~Ei~~Lr~q 128 (175)
T 3lay_A 117 AVAKEMESLGQK 128 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 280
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=56.16 E-value=83 Score=25.81 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=43.9
Q ss_pred CChhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 94 TDKPAILDD---AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 94 ~DKasIL~d---AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..+.+|+.. -...|..|+..-++|.+.........++|..+.|.|+-+...|...+++...=|+..
T Consensus 89 ~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 89 KEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 344455442 234455566666777777777777778888888888888888877777765555544
No 281
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.16 E-value=56 Score=24.99 Aligned_cols=13 Identities=8% Similarity=0.332 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhhc
Q 028060 74 RLNDRFLDLSCIL 86 (214)
Q Consensus 74 kLN~~F~~LrslL 86 (214)
+||.....|..+|
T Consensus 25 ~In~~vs~l~r~v 37 (130)
T 2dnx_A 25 RISQATAQIKNLM 37 (130)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555555
No 282
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=55.85 E-value=18 Score=25.67 Aligned_cols=30 Identities=33% Similarity=0.321 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
.+.|++|..++++-.+|...|+.++.+.+.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666554
No 283
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=55.76 E-value=35 Score=29.01 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
+..|+|+.+....-.+..+|..-.++|+.|+..|+..+.+|+
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 345666667666667777777777777777777777666665
No 284
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=55.45 E-value=39 Score=25.75 Aligned_cols=59 Identities=19% Similarity=0.085 Sum_probs=35.8
Q ss_pred HhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 82 LSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 82 LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~ 144 (214)
|....||-.....+-..+ -+.+++|...+.+|+++.=.|+..+..-.-|+++|+.....
T Consensus 30 LaER~~pL~id~l~~~~L----~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (107)
T 1ytz_T 30 LAERRKPLNIDHLNEDKL----RDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQ 88 (107)
T ss_dssp HHHTCCCCCCSSSCSSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Confidence 444445534344443332 36677777888888887777777766666666666654443
No 285
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=55.44 E-value=44 Score=27.00 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 028060 103 AIRVLNQ 109 (214)
Q Consensus 103 AI~yIk~ 109 (214)
+++|+.+
T Consensus 22 ~~~~~~~ 28 (146)
T 2xnx_M 22 AIDQASR 28 (146)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 286
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=55.18 E-value=17 Score=30.58 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQE 126 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ 126 (214)
++.-+++.|..|+.+...|+++|+.|..
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455544444444444443
No 287
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=54.89 E-value=62 Score=24.36 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 73 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 73 dkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.+|..-|..|...|. ...++|+.++.+|+.+...|+.-...++ -||..-.-|..|.++-
T Consensus 32 qELs~tfarLc~~Vd-----------------~t~~eL~~EI~~L~~eI~~LE~iqs~aK----~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 32 QEMATTFARLCQQVD-----------------MTQKHLEEEIARLSKEIDQLEKMQNNSK----LLRNKAVQLESELENF 90 (96)
T ss_dssp ---CCHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHH
Confidence 345666666666662 4556677777777666655544332222 2344444455555554
Q ss_pred HH
Q 028060 153 EQ 154 (214)
Q Consensus 153 ~~ 154 (214)
..
T Consensus 91 ~~ 92 (96)
T 1t3j_A 91 SK 92 (96)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 288
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=54.73 E-value=92 Score=25.87 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 68 EKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEE 127 (214)
Q Consensus 68 ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~e 127 (214)
|..|+..-..++. ....||-.....+-..+ -++.++|...+.+|+++.=.|...
T Consensus 34 E~e~k~eEKkkiL--aER~kPLnid~Lse~~L----~e~ckELh~~I~~LEeEKYDlE~k 87 (180)
T 1j1e_C 34 EAEERRGEKGRAL--STRAQPLELAGLGFAEL----QDLARQLHARVDKVDEERYDIEAK 87 (180)
T ss_dssp HHHHHHHHHHHHH--HHHSCCCCGGGCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHhCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444444444444 44445533333332222 244445555555555544334333
No 289
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=54.54 E-value=50 Score=29.50 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIK------SLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~------eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
+|+..|+++.++|.++.++++..++ ..+..+.++.++...++..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEE 299 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777776666654432 1233444444444444444443
No 290
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.16 E-value=69 Score=24.28 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=9.4
Q ss_pred HHHHhhhcCCCCCCCCChhhHH
Q 028060 79 FLDLSCILEPGRPARTDKPAIL 100 (214)
Q Consensus 79 F~~LrslLPP~~~~K~DKasIL 100 (214)
+..||..|.- ...+|+.|.
T Consensus 22 I~~LR~qid~---~~~e~a~l~ 40 (119)
T 3ol1_A 22 MRELRRQVDQ---LTNDKARVE 40 (119)
T ss_dssp HHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHH
Confidence 4456666621 235565554
No 291
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=54.00 E-value=41 Score=27.91 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELKETNE 122 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~ 122 (214)
+.-|-+-|..|+.++..|+.++.
T Consensus 130 i~~AertV~kLqkeiD~LEDeL~ 152 (175)
T 3mud_A 130 ICYCLDTTAKNEKSIDDLEEKVA 152 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 292
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=53.94 E-value=55 Score=23.11 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHH-hcCCCCCCCCC
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKN----ELREEKLILKA---DKEKLEQQLKV-MAMPTGGYMPT 169 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~ekn----ELr~Ek~~Lk~---e~e~L~~qlk~-~~~~p~g~~p~ 169 (214)
-++...+.|+.+++.+.+.++.|..|.+ .||+-....+. +...|...++. +.+--.||.+|
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~~~f~~p 74 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIP 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHHHHCBTTBCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCcCCCCC
Confidence 3455666777777777777777777665 55554332221 22234445544 45666778754
No 293
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=53.85 E-value=61 Score=30.52 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 132 KAE-KNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 132 ~~e-knELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..+ ..+|+++...|+.+...++.++...
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5566666667777777777777653
No 294
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.75 E-value=24 Score=22.50 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~ 144 (214)
+++|..|..++..|++||-.
T Consensus 14 keQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 295
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=53.61 E-value=33 Score=28.28 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ---QLKVM 159 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~---qlk~~ 159 (214)
.|+...+.|......|..++..|..+...|..+++.|+. .++.+
T Consensus 46 sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~ 92 (174)
T 2p22_A 46 SIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQF 92 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777788888888888888888888888888888 55554
No 296
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=53.27 E-value=33 Score=25.90 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
-+..|+.++..|..+-..|.+.|+.+.+.+..+.++
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666667666666666666666666666666543
No 297
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=53.20 E-value=31 Score=31.48 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 108 NQLRTESQELKETNEKLQEEIK----------SLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~----------eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
++|+.++++|+.+...+..+|. +|+.+..+|+++...|+.+...++.++...
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555555543 344555666777777777777777777663
No 298
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=53.16 E-value=16 Score=27.57 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 028060 145 LKADKEKLEQQLKVMAMPT 163 (214)
Q Consensus 145 Lk~e~e~L~~qlk~~~~~p 163 (214)
|+.++++++.+++.+..+|
T Consensus 19 l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 19 LLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3334444444444444444
No 299
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=52.78 E-value=15 Score=27.59 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 129 KSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 129 ~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
++|+.++++|+.+...++.|+++|++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555666666666666666666653
No 300
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=52.56 E-value=26 Score=26.45 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 132 KAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 132 ~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+.|+.+|..+=..|...|..++++|+.
T Consensus 12 k~El~~L~~~E~~LD~~i~~~~~~l~~ 38 (106)
T 2aze_B 12 TQDLRQLQESEQQLDHLMNICTTQLRL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444443
No 301
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=52.52 E-value=0.21 Score=38.62 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+...|+.++..|..++..|..|+..|+.|++.+...++.+
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666665555544443
No 302
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=52.40 E-value=32 Score=31.40 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHh
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKN----------ELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ekn----------ELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
++-|..|-++..++..+.++|+.+...+..++. +|..+...|+.++..|+.+++.+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKV 94 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554433 23444455555555555555554
No 303
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.29 E-value=61 Score=23.14 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 124 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 124 L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|...++.+..++..|......++.+.+.|+.+|.
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443
No 304
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=52.05 E-value=46 Score=21.66 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 028060 109 QLRTESQELKE 119 (214)
Q Consensus 109 ~Lr~~vq~L~~ 119 (214)
.|+.+.|.|+.
T Consensus 4 alkselqalkk 14 (48)
T 1g6u_A 4 ALKSELQALKK 14 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35556666653
No 305
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=51.99 E-value=7.5 Score=34.89 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+++++.|+..+++++.+.+.|+..+..|+..+
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444555555555443
No 306
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=51.93 E-value=68 Score=24.55 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
+.+.+.++..|..+...|...++.|..|++
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555554
No 307
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=51.38 E-value=42 Score=31.07 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhcC
Q 028060 74 RLNDRFLDLSCILE 87 (214)
Q Consensus 74 kLN~~F~~LrslLP 87 (214)
.+..+|..|+..|.
T Consensus 64 ~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 64 DFTSRINKLRDSLF 77 (390)
T ss_pred hHHHHHHHHHHHHH
Confidence 45556666666663
No 308
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.30 E-value=66 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
|++||.++..+..++..|.-+++.++.....
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~ed 32 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMR 32 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665555555544443
No 309
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=50.11 E-value=69 Score=23.07 Aligned_cols=42 Identities=26% Similarity=0.523 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 028060 121 NEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYMPTHP 171 (214)
Q Consensus 121 n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~p~~p 171 (214)
.+.++..|..++.|.+-+....+.++.++.-|+. +|+.|-.|
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~---------ag~ip~AP 51 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQE---------AGYIPEAP 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCCCCCCC
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHHh---------cCCCCCCC
Confidence 4455566666666776666666666666666555 56776444
No 310
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=49.87 E-value=31 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
|++..++|-.+.+.|+.....|+..++
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe 31 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLE 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444443
No 311
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=49.83 E-value=40 Score=26.55 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 138 LREEKLILKADKEKL 152 (214)
Q Consensus 138 Lr~Ek~~Lk~e~e~L 152 (214)
+.+|+..|..+|++|
T Consensus 41 f~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 41 LEKEKATLEAEIARL 55 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 312
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=49.61 E-value=28 Score=25.77 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
.+|+.+++.|+.+..+|..++.+++.+.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666677777666666666666665433
No 313
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=49.47 E-value=40 Score=28.57 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
..|..++..|+.+...|+.+...+.++..-+|.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444454444433
No 314
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=49.26 E-value=85 Score=27.06 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLK------AEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~------~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
|+.-+..++.++.....|..+|..|+ ..+..|++|..+..++..-.+.||
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL 154 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 33334445555566677777777766 345566666655554444444444
No 315
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.94 E-value=20 Score=32.95 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 113 ESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 113 ~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
++++++.....+.+.++.|..+.++|..+...++.|+
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~ 62 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDEL 62 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555544433333333
No 316
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=48.67 E-value=32 Score=30.76 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 128 IKSLKAEKNELREEKLILKAD 148 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e 148 (214)
|+.|..++++|+++.+.|+..
T Consensus 30 I~~Lq~~le~L~~KI~~LE~~ 50 (323)
T 1lwu_B 30 LRSMKSVLEHLRAKMQRMEEA 50 (323)
T ss_dssp HHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 317
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=48.66 E-value=31 Score=22.37 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
..+.+.+|..+-+.|++....|..++..|...
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655555555555555444433
No 318
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.65 E-value=71 Score=22.80 Aligned_cols=43 Identities=9% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLI 144 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~ 144 (214)
.+..-++.++.+.+.|+.....|+..+.+-+.+-+.++.|...
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888777777777766666656555543
No 319
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=48.58 E-value=73 Score=23.42 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKA-EKNEL---REEKLILKADKEKLEQQLK 157 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~-eknEL---r~Ek~~Lk~e~e~L~~qlk 157 (214)
.+.++|+.-++.|+.....|.+-+.-... ...|+ +.-...++.+++.|+.++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666665555443211 11122 2223455666666666654
No 320
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=48.50 E-value=1.2e+02 Score=28.59 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 142 KLILKADKEKLEQQLKV 158 (214)
Q Consensus 142 k~~Lk~e~e~L~~qlk~ 158 (214)
...|+.++..|+.+++.
T Consensus 113 ~~~l~~~i~~le~~~~~ 129 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQ 129 (484)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 321
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=47.59 E-value=93 Score=25.27 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.+++.|+.++..+.+.|+.-+.++.||......+|.=++|=+
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~ 46 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNR 46 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777788888888888888777776665555443
No 322
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=47.46 E-value=73 Score=22.60 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
|..+.+.+......|+.++..++.+......|-+.|-.=|-.|+.++.+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555655555555555555555555555556665544
No 323
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=47.39 E-value=63 Score=23.85 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=9.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~ 118 (214)
.|-..|.++=..|.+.++-+++++
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMe 69 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEME 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 324
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=47.00 E-value=90 Score=23.50 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQELK 118 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~ 118 (214)
-.++-+++++|..++++++
T Consensus 24 ~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 24 QVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777755
No 325
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=46.64 E-value=50 Score=25.12 Aligned_cols=42 Identities=26% Similarity=0.134 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
-+.+++|...+.+|+++.=.|+..+..-.-|+++|+.....|
T Consensus 48 ~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 48 REKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 366777777788888777777776666666666666554444
No 326
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=46.44 E-value=68 Score=21.98 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQE 126 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ 126 (214)
++-|-.|+.+++.|+.++..|..
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777776665544
No 327
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=46.39 E-value=5.1 Score=25.15 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLK 132 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~ 132 (214)
.|.-|+.+++.|+.+.+.+++++..+.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444443
No 328
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=45.97 E-value=84 Score=22.89 Aligned_cols=55 Identities=13% Similarity=0.272 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSL--K-AEKNELREEKLILKADKEK-LEQQLKVM 159 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL--~-~eknELr~Ek~~Lk~e~e~-L~~qlk~~ 159 (214)
..|++.+..+++..+-..++.-|++.+ - ..+..+....-.-|+++.+ |..+++.+
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444 1 2233333333444555555 55555543
No 329
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=45.40 E-value=88 Score=29.42 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028060 137 ELREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
.|+.....|+..+.+|+..+..
T Consensus 172 ~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 172 VLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666555543
No 330
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.46 E-value=11 Score=22.12 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~ekn 136 (214)
|+=+|..|+.+|..|++.+.
T Consensus 5 lefendaleqkiaalkqkia 24 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 331
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=44.40 E-value=15 Score=26.87 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
++|++.||..+.||.+.+..|+.|..-|.+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777766654
No 332
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.92 E-value=23 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 119 ETNEKLQEEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 119 ~~n~~L~~ei~eL~~eknELr~Ek~~L 145 (214)
++.+.|++++++|..|+.+|+.+...+
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355556666666666666665554444
No 333
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=43.91 E-value=48 Score=27.77 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
+|...-.++..|+.+|..|++|-+.|..+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555555444444433
No 334
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=43.25 E-value=1.1e+02 Score=25.03 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 111 RTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 111 r~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
+..+..|......|.+.++......-+|..+...||-++-.|
T Consensus 102 ksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL 143 (170)
T 3l4q_C 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQL 143 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 333334444444444444444444444444444444444433
No 335
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=42.85 E-value=1.8e+02 Score=25.94 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 028060 136 NELREEKLILKADKEKLEQQLKVMAMPTGGYMP 168 (214)
Q Consensus 136 nELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~p 168 (214)
-++..+...+-.+++.|+.|+..++.|..++.|
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ierLs~pgg~~dp 111 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIERLSQPGGSEDQ 111 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 456666667777788899999999888776654
No 336
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=42.82 E-value=64 Score=23.57 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
+....|+.||..+..+ ..++|++-+..|..-+.|-|+|-
T Consensus 9 k~L~niR~LRA~arel--~le~Lee~leKl~~VveERree~ 47 (86)
T 3nr7_A 9 KILNNIRTLRAQARES--TLETLEEMLEKLEVVVNERREEE 47 (86)
T ss_dssp HHHTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777765554 33344444444444444444443
No 337
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=42.72 E-value=60 Score=23.98 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKA-EKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~-eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.|++.+..+++.++-..++.-|++.+-. .+..+......-|+++.+|+.++
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444444444333321 12233333333445555555544
No 338
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=42.47 E-value=1.2e+02 Score=23.84 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 68 EKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 68 ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
|..++..-..+|. ....||-.....+- .+--+..++|...+.+|+++.=.|...+..-.-|+++|
T Consensus 34 E~e~k~eeKkkiL--aER~~pL~id~ls~----~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL 98 (133)
T 1j1d_C 34 EAEERRGEKGRAL--STRAQPLELAGLGF----AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADL 98 (133)
T ss_dssp HHHHHHHHHHHHH--HHHTCCCCCTTCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHhCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHH
Confidence 4444444444444 34445533333331 22234445555555555555444444433333333333
No 339
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.45 E-value=35 Score=31.35 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028060 120 TNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPT 163 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p 163 (214)
...+++.++++.......|..+...|+.+...++.+++.+..+|
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~ 69 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPG 69 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455555555555555666666666666666666666654443
No 340
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=42.33 E-value=27 Score=25.89 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQLRTESQEL 117 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L 117 (214)
|.+|-++|.++.-+++.+
T Consensus 47 l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 47 LEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 334444444444444443
No 341
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=42.18 E-value=87 Score=21.98 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 139 REEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 139 r~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+-....|..|++.+..+|.+
T Consensus 38 ~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 38 NRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33344455555555555543
No 342
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=41.98 E-value=70 Score=23.97 Aligned_cols=19 Identities=32% Similarity=0.202 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETN 121 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n 121 (214)
..+-.++|+.++.+|+.++
T Consensus 21 ~a~~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFN 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666554
No 343
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=41.32 E-value=1.4e+02 Score=24.05 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR-------EEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr-------~Ek~~Lk~e~e~L~~qlk~ 158 (214)
+-++.|.....+.....+.+.++|+.|+..+.+.. -....|..++++|+..|..
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554555666777777776666532 2235788888888877754
No 344
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.28 E-value=97 Score=28.56 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
++.++...|+..+.....++.+|+.....+++.++.|++++..+
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444444455555567777777777888888888877664
No 345
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=40.93 E-value=97 Score=28.01 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhc
Q 028060 74 RLNDRFLDLSCIL 86 (214)
Q Consensus 74 kLN~~F~~LrslL 86 (214)
.|-+-|..++.-|
T Consensus 144 ~~~~~~~~~~~e~ 156 (373)
T 3hhm_B 144 RLYEEYTRTSQEI 156 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhccchHHH
Confidence 3444444433333
No 346
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=40.87 E-value=43 Score=25.41 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 138 LREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 138 Lr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
..++...|+.++..|+.|+..
T Consensus 94 e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555543
No 347
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=40.52 E-value=1.3e+02 Score=23.65 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|++...+|-+.|..|..|+.+|......-+-||..|..++..+
T Consensus 63 L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 3333444444455555555555555555567788888877766
No 348
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=40.37 E-value=41 Score=23.88 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 131 LKAEKNELREEKLILKADK 149 (214)
Q Consensus 131 L~~eknELr~Ek~~Lk~e~ 149 (214)
|..+..+|.+|+..|+.++
T Consensus 55 Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 349
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=40.05 E-value=1.1e+02 Score=25.30 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
..=...+++|+.+++.|++++...+.+...++++
T Consensus 131 ~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567778888888777776666555555554
No 350
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=39.86 E-value=48 Score=20.60 Aligned_cols=29 Identities=34% Similarity=0.420 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 124 LQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 124 L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
|+++-..|..++..|+.++..|+.-++.|
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555667777777777777777666554
No 351
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=39.32 E-value=1.4e+02 Score=23.52 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 106 VLNQLRTESQELKE-TNEKLQEEIKSLK--------AEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 106 yIk~Lr~~vq~L~~-~n~~L~~ei~eL~--------~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
-+..|+.+++.|+. +...+.+.+.+-+ .+...-+++...+...+..|+..|....
T Consensus 10 g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 10 GYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 35667777777754 4444445554443 4444567778888999999999998754
No 352
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=39.27 E-value=1.4e+02 Score=23.46 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 106 VLNQLRTESQELKE-TNEKLQEEIKSLK--------AEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 106 yIk~Lr~~vq~L~~-~n~~L~~ei~eL~--------~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-...|+.+++.|+. +...+-..+.+.+ .+...-+++...+...+..|+..|...
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 35667777777776 4445554554433 455556777888889999999999875
No 353
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.10 E-value=60 Score=20.62 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKE 119 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~ 119 (214)
.|+++-+-|..|+.+++.|++
T Consensus 9 TLeEtkeQi~~l~~kl~~Lke 29 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQE 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 354
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=39.00 E-value=1.3e+02 Score=23.02 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=31.1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIR-VLNQLRTESQELKETNEK---LQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 102 dAI~-yIk~Lr~~vq~L~~~n~~---L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
.||. .-+.|++....|.....+ -.+|.+++..+..+|-..+..+..|+.+|..-+|
T Consensus 48 ~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 48 KAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3443 444555544444433332 3344555556666677777777777777766554
No 355
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=38.38 E-value=1.7e+02 Score=24.24 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+|++...+|-+.|..|..|+.+|......-.-||..|..++..+
T Consensus 62 ~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 34444444555555555566666555555567888888888776
No 356
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=38.29 E-value=1.2e+02 Score=22.49 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=15.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhc
Q 028060 61 PGSKACREKLRRERLNDRFLDLSCIL 86 (214)
Q Consensus 61 ~~sH~~~ERkRRdkLN~~F~~LrslL 86 (214)
-.+|-.-|++| .+|...+.+|..-|
T Consensus 7 d~s~LPpeqRk-kkL~~Ki~el~~ei 31 (98)
T 2ke4_A 7 DFSHLPPEQQR-KRLQQQLEERSREL 31 (98)
T ss_dssp CSSSSCHHHHH-HHHHHHHHHHHHHH
T ss_pred hhccCCHHHHH-HHHHHHHHHHHHHH
Confidence 45566666544 46666666666655
No 357
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.41 E-value=16 Score=24.45 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKL 124 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L 124 (214)
.||.+|+.+++.|+..+..|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777877777777665544
No 358
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.25 E-value=1.2e+02 Score=22.25 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 135 KNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~qlk 157 (214)
++.-.++...|+.+|++....++
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 359
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=37.13 E-value=96 Score=23.94 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 119 ETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 119 ~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+-.+-|...++.|+..+..+......++.++..++..++.+
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666677777777777777777777777776664
No 360
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=36.76 E-value=50 Score=26.45 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhcC--CCCCCCCChhhHHHHHHHHHHHH
Q 028060 73 ERLNDRFLDLSCILE--PGRPARTDKPAILDDAIRVLNQL 110 (214)
Q Consensus 73 dkLN~~F~~LrslLP--P~~~~K~DKasIL~dAI~yIk~L 110 (214)
-.|+=.|..|.+++| ||.+-+.-|--||.+|.+++..|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 357789999999997 35566788999999999988766
No 361
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=36.76 E-value=87 Score=20.70 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 028060 107 LNQLRTESQELK 118 (214)
Q Consensus 107 Ik~Lr~~vq~L~ 118 (214)
|..|++++..|+
T Consensus 14 V~KLek~ID~LE 25 (52)
T 2z5i_A 14 VARLKKLVDDLE 25 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 362
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=36.40 E-value=1.4e+02 Score=23.99 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEI--KSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGY 166 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei--~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~ 166 (214)
..=+..|+++-....++.+-...+-... .+|+. -+..-...-+.++++|++-+..+...|++.
T Consensus 15 dlf~~~L~Diy~aE~q~~~aL~~~~~~a~~p~Lk~---~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~ 79 (173)
T 2gyq_A 15 DLLLHGLRDIYYAEQQITKALPKMIEQATNRDLSQ---GLTSHLEETQKQIERLDQVFKKLGQKPSGV 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTCCSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3344555555555555554444443333 22332 244555667889999999999987776643
No 363
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=35.82 E-value=1.3e+02 Score=28.33 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=43.0
Q ss_pred HHHHHHH---HHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 66 CREKLRR---ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 66 ~~ERkRR---dkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
.-|..|| ..|.+.+.-|++-+- ...+...-++....+.+++.++.....|....+.|...-....-..+++..=.
T Consensus 49 ~~e~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~g~~~~r~~~~~~lt 126 (526)
T 2de0_X 49 DHEILRRRIENGAKELWFFLQSELK--KLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGDWREKEAKDLT 126 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH--HhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 3477776 344455555555551 11122344566666677777777666666666655544333332333333323
Q ss_pred HHHHHHHHHHH
Q 028060 143 LILKADKEKLE 153 (214)
Q Consensus 143 ~~Lk~e~e~L~ 153 (214)
..++..+..+|
T Consensus 127 ~~vq~~i~~~Q 137 (526)
T 2de0_X 127 ELVQRRITYLQ 137 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 34444444444
No 364
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=35.81 E-value=1.1e+02 Score=21.14 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETN---------EKLQEEIKSLKAEKNELR--EEKLILKADKEKLEQQLK 157 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n---------~~L~~ei~eL~~eknELr--~Ek~~Lk~e~e~L~~qlk 157 (214)
++.|++.+..|++.. +.|...-++|+..+.||- -|......|..+|+.+++
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 344555555555433 334444444444444431 122333445555555554
No 365
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=35.79 E-value=1.3e+02 Score=24.16 Aligned_cols=30 Identities=3% Similarity=0.004 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 028060 138 LREEKLILKADKEKLEQQLKVMAMPTGGYM 167 (214)
Q Consensus 138 Lr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~ 167 (214)
+++.....+.++++|++-+..+...|++.-
T Consensus 42 ~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~k 71 (166)
T 3hiu_A 42 IEQHVEETQQQSAGVQRCLELLNGSIPTAK 71 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcCc
Confidence 444556678899999999999988877654
No 366
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=35.37 E-value=58 Score=25.74 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
|.+++.+++++.++..+|..+|+.+.....-
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555555555555555555554444433
No 367
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.25 E-value=26 Score=32.26 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr 139 (214)
.|+.++..+..+...++.++.+++
T Consensus 43 ~l~~e~~r~~~e~~~~~~~~~~~~ 66 (434)
T 4b4t_M 43 IFRSELQRLSHENNVMLEKIKDNK 66 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 368
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=34.62 E-value=24 Score=31.55 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNE 137 (214)
Q Consensus 122 ~~L~~ei~eL~~eknE 137 (214)
+.++++|.+|+..+++
T Consensus 28 ~~~~~ki~~L~~~i~~ 43 (319)
T 1fzc_C 28 NSNNQKIVNLKEKVAQ 43 (319)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 369
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=34.40 E-value=90 Score=30.01 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
|+.+.+.++++++.++.+.++++.....++.++.++-
T Consensus 357 l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~ 393 (695)
T 2j69_A 357 LEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTR 393 (695)
T ss_dssp HTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666655555555443
No 370
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=34.18 E-value=99 Score=20.31 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHH
Q 028060 136 NELREEKLILKADK-EKLEQQLKV 158 (214)
Q Consensus 136 nELr~Ek~~Lk~e~-e~L~~qlk~ 158 (214)
.|+|.|.+++|.|| +-+.++|..
T Consensus 18 ~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 18 EEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555553 334444443
No 371
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=34.12 E-value=1.3e+02 Score=22.40 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQ-ELKETNEKLQEEIKSLKA--EKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 109 ~Lr~~vq-~L~~~n~~L~~ei~eL~~--eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+||..++ +|......|..++.+|.. .+..|..+-..|..+.-+++.++
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y 87 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSY 87 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 555555555555554333 44444445555554444444444
No 372
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=34.10 E-value=64 Score=22.74 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
..+..|+.++..-.++|++|+.+++.+
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 373
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=34.04 E-value=1.6e+02 Score=22.57 Aligned_cols=13 Identities=8% Similarity=-0.253 Sum_probs=6.8
Q ss_pred CCCCchhHHHHHH
Q 028060 59 SRPGSKACREKLR 71 (214)
Q Consensus 59 ~~~~sH~~~ERkR 71 (214)
-|.-+-...++.+
T Consensus 38 ~R~Y~~~dl~~l~ 50 (142)
T 3gp4_A 38 VRKFGAEDLRWIL 50 (142)
T ss_dssp CBCBCHHHHHHHH
T ss_pred CeeeCHHHHHHHH
Confidence 3455555555554
No 374
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.19 E-value=1.3e+02 Score=23.19 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 128 IKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
..-|...+.+|.++...|+..++.|+..+...
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555443
No 375
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=33.07 E-value=41 Score=24.15 Aligned_cols=6 Identities=50% Similarity=0.473 Sum_probs=2.3
Q ss_pred HHHHHH
Q 028060 105 RVLNQL 110 (214)
Q Consensus 105 ~yIk~L 110 (214)
+++..|
T Consensus 32 ~Hl~~L 37 (71)
T 3bbp_D 32 DHLNGL 37 (71)
T ss_dssp SHHHHH
T ss_pred HHHHHH
Confidence 343333
No 376
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.84 E-value=1e+02 Score=20.00 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 114 SQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
+++...+.+..+++|.+|+....
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 377
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.76 E-value=46 Score=30.66 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 135 KNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
+.+++++...|+.+.++++.+++.+..+
T Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 101 (437)
T 4b4t_L 74 LKQRRQNIRDLEKLYDKTENDIKALQSI 101 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3334444444555555555556655444
No 378
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=32.67 E-value=1.9e+02 Score=26.34 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 126 EEIKSLKAEKNELRE 140 (214)
Q Consensus 126 ~ei~eL~~eknELr~ 140 (214)
.+++.+..++.|+..
T Consensus 207 ~~l~~l~~ql~ei~~ 221 (517)
T 4ad8_A 207 RQIDLLAFQVQEISE 221 (517)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 379
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.56 E-value=46 Score=24.54 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKL 124 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L 124 (214)
|..|+.+..+|+.+...+
T Consensus 10 i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 380
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=32.54 E-value=1.4e+02 Score=28.48 Aligned_cols=46 Identities=26% Similarity=0.190 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
-+|..+|+.++.-|++....--..|+-|+.-+.+++.+.++|...|
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888877654333778888888888888888887544
No 381
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.17 E-value=1.6e+02 Score=21.95 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=4.0
Q ss_pred HHHHHHHHHhhhc
Q 028060 74 RLNDRFLDLSCIL 86 (214)
Q Consensus 74 kLN~~F~~LrslL 86 (214)
++|+.+..+|.-.
T Consensus 11 Rl~ELLD~ir~Ef 23 (92)
T 3vp9_A 11 KLNELLDAIRQEF 23 (92)
T ss_dssp ------CCTTTTT
T ss_pred hHHHHHHHHHHHH
Confidence 4566666555555
No 382
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.15 E-value=1.1e+02 Score=20.17 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 028060 144 ILKADKEKLEQQ 155 (214)
Q Consensus 144 ~Lk~e~e~L~~q 155 (214)
.|+.||.+|+.+
T Consensus 35 nlrdeiarlene 46 (52)
T 3he5_B 35 NLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 383
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=32.12 E-value=1.3e+02 Score=21.08 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKL 143 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~ 143 (214)
.|+..+.+++.+|+........++.+.++..-||..+..
T Consensus 10 ~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiL 48 (65)
T 3t97_B 10 TRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTL 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 577778888888888888888889999998888888764
No 384
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=32.08 E-value=56 Score=19.18 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.5
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 028060 94 TDKPAILDDAIRVLNQLRTE 113 (214)
Q Consensus 94 ~DKasIL~dAI~yIk~Lr~~ 113 (214)
..+..+|-+|.+||...+.+
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45778899999999866553
No 385
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=32.07 E-value=1.6e+02 Score=22.19 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKE---TNEKLQE---EIKSLKAEKNELREEK 142 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~---~n~~L~~---ei~eL~~eknELr~Ek 142 (214)
..+..+|-..++++++ ..+.|+. .|++-++.+++||+|.
T Consensus 44 t~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~ALdaLR~eH 88 (98)
T 3f1i_H 44 NGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEH 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 3345543 3566677778888876
No 386
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=32.05 E-value=1.7e+02 Score=22.52 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 028060 117 LKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYMPTHP 171 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~p~~p 171 (214)
|-...+.+...|..++.|++-+....+.|+.++.-|+. +||.|-.|
T Consensus 48 l~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq~---------ag~i~~AP 93 (113)
T 1aa0_A 48 LTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQE---------AGYIPEAP 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------TCCCCCCC
T ss_pred cchhhhccccchhhhheeecccccchhhhhhhhHHHHh---------cCCCCCCC
Confidence 33444555556666666666655555555555444443 46776444
No 387
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.00 E-value=1.1e+02 Score=20.00 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 114 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQ 154 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ 154 (214)
+.+|+.+...|+.+-+.|+...---.|-.+-|..||..|..
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrk 45 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34455555555554444443222222323344444444443
No 388
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=31.86 E-value=1.9e+02 Score=22.92 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
..+.++.++..+....|.+.|..|..|+++-++=
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L 101 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELEDRRQL 101 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666665544433
No 389
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=31.82 E-value=1.2e+02 Score=24.51 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 028060 105 RVLNQLRTESQELKETNEKLQEE---IKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTG 164 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~e---i~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~ 164 (214)
..++++-...+++.+-...+-.. ..+|+.. +++.....+.++++|++-+..+...|+
T Consensus 12 ~~L~Diy~aE~Q~~~aL~~ma~~~a~~peLk~a---~e~Hl~eT~~qi~rLe~vf~~lg~~~~ 71 (171)
T 3ogh_B 12 DWLRDAHAMEKQAESMLESMASRIDNYPELRAR---IEQHLSETKNQIVQLETILDRNDISRS 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 33444444444444444443322 2333333 444556678899999999998876665
No 390
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=31.70 E-value=2.5e+02 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhcCC
Q 028060 72 RERLNDRFLDLSCILEP 88 (214)
Q Consensus 72 RdkLN~~F~~LrslLPP 88 (214)
|.+|+.-+.+|+.-|.|
T Consensus 17 r~~l~~~~eel~~~L~P 33 (273)
T 3s84_A 17 KEEIGKELEELRARLLP 33 (273)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45677778888888865
No 391
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=31.68 E-value=1.5e+02 Score=21.62 Aligned_cols=54 Identities=13% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAE-------KNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~e-------knELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
=|..|+.++.+|+..-.+...++++|-.+ +-++-++....-++.+.+..+|+.+
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777776655555555554432 2334444444456666666666654
No 392
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=31.50 E-value=1.8e+02 Score=22.36 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 108 NQLRTESQELKETNEKL----QEEIKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 108 k~Lr~~vq~L~~~n~~L----~~ei~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.+|+.++.++......| .+..++-+.++.+|.+......+.+..|+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333322 23333334444444444444444444433
No 393
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=31.20 E-value=2.3e+02 Score=23.53 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
-..|..|..|+.+|......-+-||..|.+++..+
T Consensus 68 h~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDL 102 (182)
T 1ytz_I 68 HAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDL 102 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444455555555555555666666555554
No 394
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=31.06 E-value=1e+02 Score=27.79 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
...++|+.+.....+...++..+.|-|+-+...|...+
T Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~r 256 (373)
T 3hhm_B 219 DSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTR 256 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 33333444433333444455555555555554444433
No 395
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=31.06 E-value=2.2e+02 Score=23.43 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 123 KLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 123 ~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
.++..+..++..++++-.+...|..+.....+++
T Consensus 83 ~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~ 116 (192)
T 2p22_C 83 ENFEDLHEQKDKVQALLENARILESKYVASWQDY 116 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555554444444
No 396
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=31.04 E-value=1.5e+02 Score=23.67 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCC
Q 028060 104 IRVLNQLRTESQELKETNEKLQEEI--KSLKAEKNELREEKLILKADKEKLEQQLKV-MAMPTGGY 166 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L~~ei--~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~-~~~~p~g~ 166 (214)
+..|+++..-..++.+-...+-... .+|+.. +..-...-+.++++|++-++. +...|++.
T Consensus 11 ~~~L~D~y~aE~q~~~al~~~~~~a~~p~Lk~~---l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~ 73 (166)
T 2gs4_A 11 IHLLSDTYSAEKQLTRALAKLARATSNEKLSQA---FHAHLEETHGQIERIDQVVESESNLKIKRM 73 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTSTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3444444444444444433333222 233332 444555667899999999998 87776644
No 397
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=30.86 E-value=1.5e+02 Score=21.26 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEK 151 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~ 151 (214)
|..-|+++-.+++.|..-..-+-..+..|.++--.|.++...++..++.
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445666666666666655555555555555555555544444444433
No 398
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=30.81 E-value=1.7e+02 Score=25.16 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 028060 129 KSLKAEKN 136 (214)
Q Consensus 129 ~eL~~ekn 136 (214)
++|+..+.
T Consensus 69 eelr~kL~ 76 (273)
T 3s84_A 69 EQLRRQLT 76 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 399
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=30.53 E-value=2.2e+02 Score=23.30 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQ----EEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~----~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+|+.--.+|.+-|..-+.-++.....|- .+.+.+=..+.+.|.|-...|.++.+|+--+.
T Consensus 40 AlIda~teY~kal~tLiSL~~~y~a~lgkl~~~eeD~~WqvIi~~R~E~~d~k~e~~rles~w~ 103 (162)
T 1g73_A 40 ALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWM 103 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556777777766666665443333 55666777778888888888888888875443
No 400
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=30.35 E-value=1.1e+02 Score=30.51 Aligned_cols=48 Identities=6% Similarity=-0.016 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKN--------------ELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~ekn--------------ELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
.+..+|.++...++.+++.+...++ +-|+....+++++++|+++|..+
T Consensus 800 ~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 800 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555555544444322 23444466777888888777654
No 401
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=30.30 E-value=38 Score=25.63 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 143 LILKADKEKLEQQLK 157 (214)
Q Consensus 143 ~~Lk~e~e~L~~qlk 157 (214)
.++..|+++|..||.
T Consensus 79 Ek~~~EKe~L~~ql~ 93 (96)
T 3fx0_A 79 EKLAEKKELLQEQLE 93 (96)
T ss_dssp HHTSSTTSCC-----
T ss_pred HHHHhhHHHHHHHHH
Confidence 344455555555543
No 402
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.22 E-value=29 Score=23.32 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 028060 114 SQELKETNEKLQEE 127 (214)
Q Consensus 114 vq~L~~~n~~L~~e 127 (214)
+..|+..|..|+..
T Consensus 26 varlendnanlekd 39 (56)
T 3he4_A 26 VARLENDNANLEKD 39 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHH
Confidence 33333333333333
No 403
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=30.08 E-value=1.5e+02 Score=21.12 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKA-------EKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~-------eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
|..|+.++.+|+..-.+...++.+|-. ++-++-++....-++.+.+..+|+.+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777665555555555443 22334444444455666666666654
No 404
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.92 E-value=1.1e+02 Score=19.34 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 120 TNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 120 ~n~~L~~ei~eL~~eknELr~Ek 142 (214)
+|++|..+|..-..|+..|++|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555554443333333333333
No 405
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.79 E-value=2.6e+02 Score=23.79 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
|+..+++.+.++..++..+.+.++...|+|+.-
T Consensus 183 l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 183 LSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444455444444443
No 406
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=29.39 E-value=1.6e+02 Score=21.29 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
+-++.++|||..--..+++...|+.++...+.+.-.+.+
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~e 65 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQ 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445666777766666666666666555444433333333
No 407
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=29.38 E-value=61 Score=24.48 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=3.4
Q ss_pred HHHHHHHHHHHHHH
Q 028060 138 LREEKLILKADKEK 151 (214)
Q Consensus 138 Lr~Ek~~Lk~e~e~ 151 (214)
+-.|+..|..+++.
T Consensus 81 ~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 81 LAEKKELLQEQLEQ 94 (96)
T ss_dssp TSSTTSCC------
T ss_pred HHhhHHHHHHHHHh
Confidence 33444444444433
No 408
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=29.36 E-value=72 Score=24.35 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 028060 110 LRTESQELK 118 (214)
Q Consensus 110 Lr~~vq~L~ 118 (214)
|..+++.|+
T Consensus 4 l~~~~~~l~ 12 (182)
T 3kqg_A 4 LNAQIPELK 12 (182)
T ss_dssp ---------
T ss_pred hhhhHHHHH
Confidence 333444444
No 409
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=28.96 E-value=77 Score=22.29 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 128 IKSLKAEKNELREEKLILKADKEKLE 153 (214)
Q Consensus 128 i~eL~~eknELr~Ek~~Lk~e~e~L~ 153 (214)
.+++-+|.|||+.....++.|...-+
T Consensus 5 lr~iLqERNELKa~vf~lqeEL~yY~ 30 (65)
T 1yhn_B 5 FEQILQERNELKAKVFLLKEELAYFQ 30 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555544444444444333
No 410
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=28.96 E-value=1.4e+02 Score=20.65 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 028060 105 RVLNQLRTESQ 115 (214)
Q Consensus 105 ~yIk~Lr~~vq 115 (214)
.||..|+.+++
T Consensus 48 ~~~~~Le~rl~ 58 (96)
T 1pyi_A 48 SYVFFLEDRLA 58 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35554444433
No 411
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.94 E-value=1e+02 Score=25.09 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLK 132 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~ 132 (214)
..+..|+.+.+.+.+..++-++.+++|.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~ 32 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELI 32 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333
No 412
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.75 E-value=1.6e+02 Score=20.90 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 138 LREEKLILKADKEKLEQQLKV 158 (214)
Q Consensus 138 Lr~Ek~~Lk~e~e~L~~qlk~ 158 (214)
++..-..|..-+..+.+.|..
T Consensus 65 W~~~a~~l~~~L~~i~~~l~~ 85 (103)
T 4i0x_B 65 WMDAARELVEGLSQMEEAART 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443
No 413
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=28.71 E-value=82 Score=22.92 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=7.4
Q ss_pred HHHHHHHHHHH
Q 028060 143 LILKADKEKLE 153 (214)
Q Consensus 143 ~~Lk~e~e~L~ 153 (214)
+.|+.+.|++.
T Consensus 43 QsLQvqLE~IR 53 (79)
T 1tu3_F 43 QTLQVQLERIR 53 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46677777764
No 414
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=28.69 E-value=16 Score=35.64 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNEKL 124 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~~L 124 (214)
|.++++...++++|++.....
T Consensus 549 Iq~~re~~~kv~~L~~~~~~r 569 (624)
T 3lvg_A 549 IQVMKEYLTKVDKLDASESLR 569 (624)
T ss_dssp TTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776655443
No 415
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=28.65 E-value=71 Score=25.14 Aligned_cols=11 Identities=55% Similarity=0.607 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 028060 146 KADKEKLEQQL 156 (214)
Q Consensus 146 k~e~e~L~~ql 156 (214)
|+|.++.+..|
T Consensus 109 kAEleKtqa~L 119 (125)
T 2pms_C 109 KAELEKTEADL 119 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 416
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=28.35 E-value=2.3e+02 Score=22.64 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 100 LDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 100 L~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+..|++-|..|+.++..++... ..+|..++.. ...+...|+.+++.|+..|+..
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~---n~eI~~ik~~---~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQM---NEAIDAAKAR---ASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888877777766543 3444444333 3445667788888888888775
No 417
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=28.27 E-value=2.1e+02 Score=22.23 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSL--------KAEKNELREEKLILKADKEKLEQQLKVMA 160 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL--------~~eknELr~Ek~~Lk~e~e~L~~qlk~~~ 160 (214)
+..|+.+++..........+.+++- ..+....+++...+...+..|+..|....
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~ 73 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAV 73 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4556666555333344434333333 23455677888888999999999998754
No 418
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=27.96 E-value=1.6e+02 Score=21.17 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQ 115 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq 115 (214)
-..+|+.||+.++.+-+
T Consensus 9 ~~~~A~~YvnkVK~rF~ 25 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 57899999999998754
No 419
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=27.95 E-value=1e+02 Score=18.59 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSL 131 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL 131 (214)
++.|+++++.|+..|-....+++.|
T Consensus 3 vqalkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456666666666554444444333
No 420
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.80 E-value=2.1e+02 Score=24.01 Aligned_cols=7 Identities=57% Similarity=1.066 Sum_probs=4.0
Q ss_pred cCcccCC
Q 028060 205 RDHELRP 211 (214)
Q Consensus 205 ~d~~~~p 211 (214)
.|-+|||
T Consensus 200 ~dRVLRp 206 (213)
T 4ani_A 200 KDRVLRP 206 (213)
T ss_dssp TTSCCSC
T ss_pred CCEEeec
Confidence 4556665
No 421
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.78 E-value=35 Score=26.39 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIK 129 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~ 129 (214)
+.+|..++++|+-||..|+.+++
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777788888888877776664
No 422
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.69 E-value=1.9e+02 Score=21.56 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 119 ETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 119 ~~n~~L~~ei~eL~~ekn 136 (214)
.+..+|+.|+.+|+.|.+
T Consensus 23 ~~~~~lk~E~~~lk~E~~ 40 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445555555555544
No 423
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=27.68 E-value=2.4e+02 Score=22.70 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEI 128 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei 128 (214)
=+..|.+|+..|..-+.++
T Consensus 44 EqgKVDQlqKRn~~HQKEi 62 (167)
T 4gkw_A 44 EQGKVDQLQKRNVAHQKEI 62 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHhccHHHHHH
Confidence 3334444444443333333
No 424
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=27.53 E-value=1.3e+02 Score=28.33 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhc
Q 028060 75 LNDRFLDLSCIL 86 (214)
Q Consensus 75 LN~~F~~LrslL 86 (214)
++.-+.+|..+|
T Consensus 93 V~~dl~~Le~~l 104 (461)
T 3ghg_B 93 IRNSVDELNNNV 104 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 556666777777
No 425
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=27.41 E-value=1e+02 Score=25.68 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
++.++|...+..|+++.=.|...+..-.-|+++|+...
T Consensus 62 e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV 99 (182)
T 1ytz_I 62 ELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKL 99 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH
Confidence 45555666666666665555555555555555554433
No 426
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=27.38 E-value=2.5e+02 Score=22.75 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-H
Q 028060 73 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEI--------KSLKAEKNELREEK-L 143 (214)
Q Consensus 73 dkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei--------~eL~~eknELr~Ek-~ 143 (214)
+.|+..+.+|+.-|.|-. .-=..-|..++-.|-.+|+..++.|+.......+++ ++++..+.-+-++. .
T Consensus 69 ~~l~~~~~~l~~qL~P~~--~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~ 146 (191)
T 1nfn_A 69 KELKAYKSELEEQLTPVA--EETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRK 146 (191)
T ss_dssp HHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345556667777776621 111334555666666667666666665544333332 23444433333333 3
Q ss_pred HHHHHHHHHHHHHH
Q 028060 144 ILKADKEKLEQQLK 157 (214)
Q Consensus 144 ~Lk~e~e~L~~qlk 157 (214)
.+....+.|+.+|.
T Consensus 147 kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 147 RLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH
Confidence 55556666665554
No 427
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=27.09 E-value=2.5e+02 Score=23.44 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELR 139 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr 139 (214)
-+..+|+-|+.++.++..|+.+. .+++.+|.++.+.++
T Consensus 27 ~~~~~l~~L~~iQ~e~~~l~~e~---~~ev~~lE~ky~~~~ 64 (225)
T 2e50_A 27 EQQEAIEHIDEVQNEIDRLNEQA---SEEILKVEQKYNKLR 64 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 56778888888888877776543 445555555555443
No 428
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=26.71 E-value=91 Score=24.62 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHH
Q 028060 67 REKLRRERLNDRFLDLSCILEPGRPARTDKPAILDDAIR 105 (214)
Q Consensus 67 ~ERkRRdkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~ 105 (214)
.-+.|.+.||.+...|..++ ..+..-|..|..
T Consensus 78 ~i~~~~~~l~~~W~~L~~~~-------~~R~~~L~~a~~ 109 (218)
T 3edu_A 78 TIAEWKDGLNEMWADLLELI-------DTRMQLLAASYD 109 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 35566777777777777777 124455555543
No 429
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=26.65 E-value=1.5e+02 Score=20.36 Aligned_cols=10 Identities=40% Similarity=0.365 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 028060 147 ADKEKLEQQL 156 (214)
Q Consensus 147 ~e~e~L~~ql 156 (214)
.-++.+..+|
T Consensus 69 ~~L~~i~~~L 78 (98)
T 3gwk_C 69 QLLEDINQQL 78 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 430
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=26.54 E-value=77 Score=18.27 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQ 115 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq 115 (214)
+|-|-+|-.|+.||..+..
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4667888899988876543
No 431
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=26.52 E-value=1.2e+02 Score=18.94 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChhhHHHHHHH-HHHHH
Q 028060 74 RLNDRFLDLSCILEPGRPARTDKPAILDDAIR-VLNQL 110 (214)
Q Consensus 74 kLN~~F~~LrslLPP~~~~K~DKasIL~dAI~-yIk~L 110 (214)
.+.+++..|.... ..++..|+.+||+ ||.++
T Consensus 13 ~l~~~l~~lA~~~------~rs~s~lir~Ai~~yl~~~ 44 (52)
T 2gpe_A 13 ATRERIKSAATRI------DRTPHWLIKQAIFSYLEQL 44 (52)
T ss_dssp HHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------CcCHHHHHHHHHHHHHHHH
Confidence 4556677777666 3578888888874 66554
No 432
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=26.48 E-value=86 Score=22.10 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREEK 142 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek 142 (214)
|.+||.++..+..+.-.|-.+.-.+-.++-+++.+.
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~ 40 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTEL 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 566777777777777666666666666666655443
No 433
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=26.12 E-value=1.2e+02 Score=24.07 Aligned_cols=26 Identities=4% Similarity=0.026 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAE 134 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~e 134 (214)
.|+.++.++......+..++.+|..+
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 29 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLR 29 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444443333333333
No 434
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=25.89 E-value=1.6e+02 Score=19.99 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 106 VLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 106 yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
.|.+|+..+..++.-...+..+++.+..+...+
T Consensus 7 ~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 7 LLAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555555555544444444444444444433
No 435
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=25.89 E-value=2.4e+02 Score=22.13 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 028060 132 KAEKNELREEKLILKADKEKLEQQLKVMAMPTGGYMPTH 170 (214)
Q Consensus 132 ~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~g~~p~~ 170 (214)
......+++....++.+++.|+..++ ..|+|-.|||
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~ 202 (203)
T 3qks_A 167 ETAYKKLSELKKTINNRIKEYRDILA---RTEGGHHHHH 202 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---TTCSSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hccCCccccC
Confidence 33444455555555566666665444 4456666654
No 436
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.83 E-value=1.4e+02 Score=19.26 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 028060 105 RVLNQLRTESQELKET 120 (214)
Q Consensus 105 ~yIk~Lr~~vq~L~~~ 120 (214)
.||++|+++..+|+.-
T Consensus 10 nyiqeleernaelknl 25 (46)
T 3he4_B 10 NYIQELEERNAELKNL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhH
Confidence 4444444444444433
No 437
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=25.68 E-value=1.8e+02 Score=22.80 Aligned_cols=8 Identities=25% Similarity=0.044 Sum_probs=3.3
Q ss_pred HHHHhhhc
Q 028060 79 FLDLSCIL 86 (214)
Q Consensus 79 F~~LrslL 86 (214)
...|-..+
T Consensus 22 v~~lek~l 29 (125)
T 2pms_C 22 VHRLEQEL 29 (125)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33344444
No 438
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.57 E-value=40 Score=26.88 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 140 EEKLILKADKEKLEQQLK 157 (214)
Q Consensus 140 ~Ek~~Lk~e~e~L~~qlk 157 (214)
-+...++...+.|+.|++
T Consensus 96 ~~~~~~e~r~~~L~~ql~ 113 (135)
T 2e7s_A 96 MEKYAIEILNKRLTEQLR 113 (135)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444455554443
No 439
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=25.56 E-value=80 Score=22.61 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQE 116 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~ 116 (214)
.-+.+|+.||+.++.+-+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHHHHHHhc
Confidence 4578999999999987544
No 440
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=25.49 E-value=2e+02 Score=21.09 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhc
Q 028060 75 LNDRFLDLSCIL 86 (214)
Q Consensus 75 LN~~F~~LrslL 86 (214)
+-..+..++..|
T Consensus 23 aEsliy~~e~~L 34 (120)
T 2p32_A 23 LESYAFNLKQTI 34 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333455566666
No 441
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.22 E-value=73 Score=23.91 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 104 IRVLNQLRTESQELKETNE 122 (214)
Q Consensus 104 I~yIk~Lr~~vq~L~~~n~ 122 (214)
..-.++|+.++.+|..++.
T Consensus 29 ~~~~~~lk~E~~~lk~E~~ 47 (94)
T 3vlc_E 29 SKKYLAKVKERHELKEFNN 47 (94)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666553
No 442
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.15 E-value=1.6e+02 Score=25.29 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 102 DAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 102 dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
++=+.|..|..+++++....+.....++.++..+.||
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555544444444333333444444444444
No 443
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.12 E-value=1.7e+02 Score=20.07 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
|+.....+.....+++..+..|...++.|
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555544
No 444
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=25.09 E-value=1.4e+02 Score=21.61 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKN 136 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ekn 136 (214)
.+|.+-+++|..|=.+++..-.+...|..+..++..+++
T Consensus 4 ~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~ 42 (104)
T 4afl_A 4 MYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEID 42 (104)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555554444444444444444433
No 445
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=25.02 E-value=1.1e+02 Score=29.30 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 124 LQEEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 124 L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
|..++.+++.++..++.+...++....+++..+.
T Consensus 357 l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~ 390 (695)
T 2j69_A 357 LEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEII 390 (695)
T ss_dssp HTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444
No 446
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.01 E-value=44 Score=25.11 Aligned_cols=16 Identities=25% Similarity=0.063 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEKN 136 (214)
Q Consensus 121 n~~L~~ei~eL~~ekn 136 (214)
..+|+.|+.+|+.|.+
T Consensus 32 ~~~lk~E~~~lk~E~~ 47 (94)
T 3vlc_E 32 YLAKVKERHELKEFNN 47 (94)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555555554
No 447
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=24.91 E-value=4.7e+02 Score=25.18 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=16.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 95 DKPAILDDAIRVLNQLRTESQELKETNEKLQ 125 (214)
Q Consensus 95 DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~ 125 (214)
.+.++++..+.-.++.+.....+.++...++
T Consensus 374 slqaqvSa~t~e~k~A~d~l~a~~kek~~~~ 404 (602)
T 1cii_A 374 SARNNLSARTNEQKHANDALNALLKEKENIR 404 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544444443
No 448
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.75 E-value=1.9e+02 Score=22.57 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 028060 130 SLKAEKNELREEKL 143 (214)
Q Consensus 130 eL~~eknELr~Ek~ 143 (214)
.++.+++.+.++..
T Consensus 78 ~~k~~le~l~~~i~ 91 (180)
T 1s94_A 78 QMKEELEELMTDIK 91 (180)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 449
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=24.73 E-value=1.3e+02 Score=21.26 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 028060 121 NEKLQEEIKSLKAEK 135 (214)
Q Consensus 121 n~~L~~ei~eL~~ek 135 (214)
.+.|++.+++|..|.
T Consensus 48 V~tLe~NLrEL~~ei 62 (69)
T 1z0k_B 48 VRTLQENLRQLQDEY 62 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333443333333333
No 450
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.73 E-value=1.2e+02 Score=21.02 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 137 ELREEKLILKADKEKLEQ 154 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~~ 154 (214)
.|+.+...|+.+++.|++
T Consensus 61 ~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444445544443
No 451
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=24.67 E-value=25 Score=32.11 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHH
Q 028060 74 RLNDRFLDLSCIL-EPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEIKSL-KAEK-NELREEKLILKADKE 150 (214)
Q Consensus 74 kLN~~F~~LrslL-PP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL-~~ek-nELr~Ek~~Lk~e~e 150 (214)
.+..+|.+|...+ .|+.....+++.-|.+-...|+.+-.....++...+.+.+-.+-+ -.+. .+..+|...|+.+++
T Consensus 11 ~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~eD~e~~~~a~~e~~~l~~~~~ 90 (360)
T 2b3t_B 11 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKSE 90 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred HHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4566777777655 233333455665555544444444444444443222222111111 1121 234556667777777
Q ss_pred HHHHHHHHh
Q 028060 151 KLEQQLKVM 159 (214)
Q Consensus 151 ~L~~qlk~~ 159 (214)
.|+.+|+.+
T Consensus 91 ~le~~l~~~ 99 (360)
T 2b3t_B 91 QLEQQLQVL 99 (360)
T ss_dssp ----CCCCC
T ss_pred HHHHHHHhh
Confidence 777766544
No 452
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=24.47 E-value=1.6e+02 Score=19.88 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 028060 145 LKADKEKLEQQL 156 (214)
Q Consensus 145 Lk~e~e~L~~ql 156 (214)
+..-++.+..+|
T Consensus 68 ~~~~L~~i~~~L 79 (99)
T 3zbh_A 68 MAVLLNEVGQQL 79 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 453
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=24.30 E-value=3e+02 Score=26.58 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 028060 110 LRTESQELK 118 (214)
Q Consensus 110 Lr~~vq~L~ 118 (214)
|+..++.++
T Consensus 24 l~~~~q~~e 32 (585)
T 1y1u_A 24 LRLITQDTE 32 (585)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 454
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=23.69 E-value=67 Score=29.04 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028060 137 ELREEKLILKADKEKLE 153 (214)
Q Consensus 137 ELr~Ek~~Lk~e~e~L~ 153 (214)
+|+++...|+.+++.++
T Consensus 424 ~l~~~~~~~~~~~~~~~ 440 (468)
T 3pxg_A 424 SLRDTEQRLREQVEDTK 440 (468)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 455
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=23.38 E-value=1.9e+02 Score=20.17 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 127 EIKSLKAEKNELREEKLILK 146 (214)
Q Consensus 127 ei~eL~~eknELr~Ek~~Lk 146 (214)
++..|+.++=.|+||...+-
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL 64 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMI 64 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 56677777777777775553
No 456
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.30 E-value=2.4e+02 Score=21.25 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKAEKNEL 138 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~eknEL 138 (214)
|-++.-+.+.+.+.|++++.+|+..+.+.
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666555443
No 457
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.16 E-value=1.4e+02 Score=19.17 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 135 KNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~qlk 157 (214)
-.+|..+...|...++.|..++.
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555554
No 458
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=23.16 E-value=1.4e+02 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 126 EEIKSLKAEKNELREEKLIL 145 (214)
Q Consensus 126 ~ei~eL~~eknELr~Ek~~L 145 (214)
+|+..|..-++||++|...+
T Consensus 46 DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 46 DEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665554444
No 459
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=23.05 E-value=2.5e+02 Score=21.38 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 125 QEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 125 ~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
+++|++=..|..++.+....|-..+-.|+.++
T Consensus 68 QrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ 99 (114)
T 2xzr_A 68 QRQINENHKEMKQIEDKIEEILSKIYHIENEI 99 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33333333333334444444444444444433
No 460
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=22.98 E-value=2.1e+02 Score=20.32 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 141 EKLILKADKEKLEQQLKV 158 (214)
Q Consensus 141 Ek~~Lk~e~e~L~~qlk~ 158 (214)
....+..++..|++|+.+
T Consensus 60 qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 60 QLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334555666666666654
No 461
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=22.85 E-value=64 Score=24.05 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 97 PAILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 97 asIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
++|++.|.++..+|+...++|+..+..+.- +.++...++.-.+-...|+.=.+.+.+-+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-L~~is~~l~~~~dl~~il~~i~~~l~~~l 60 (184)
T 3p01_A 2 NAVVQRAAETYDLLKQRTEELRRANAQMSL-LTVLVQVTQASNSLEAILTPIATAFAESF 60 (184)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 457778888899999999998877655432 33333333332222233433334444433
No 462
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=22.80 E-value=2.5e+02 Score=23.35 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhcCC
Q 028060 72 RERLNDRFLDLSCILEP 88 (214)
Q Consensus 72 RdkLN~~F~~LrslLPP 88 (214)
|++++....+|+.-|-|
T Consensus 127 ~~~~~~~~eel~~~L~p 143 (243)
T 2a01_A 127 QEGARQKLHELQEKLSP 143 (243)
T ss_dssp HHHHHHHHHHHCCSCCS
T ss_pred HHHHHhhHHHHHHHHHh
Confidence 67788899999998865
No 463
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=22.80 E-value=2.3e+02 Score=20.86 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 101 DDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKE 150 (214)
Q Consensus 101 ~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e 150 (214)
++-++.++|||..--..-++...|....+.|++|+..|--.++.|-.++-
T Consensus 22 serte~lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhc
Confidence 34556777777776666666666666667777777777666666655543
No 464
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.65 E-value=1.7e+02 Score=27.51 Aligned_cols=19 Identities=16% Similarity=0.538 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028060 122 EKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 122 ~~L~~ei~eL~~eknELr~ 140 (214)
.+|++|.++|..++.+|++
T Consensus 419 ~kl~~E~~~l~~~i~~l~~ 437 (470)
T 3ilw_A 419 QRIIDDLAKIEAEIADLED 437 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 465
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=22.54 E-value=3.4e+02 Score=22.61 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 98 AILDDAIRVLNQLRTESQELKETNEKLQ----EEIKSLKAEKNELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 98 sIL~dAI~yIk~Lr~~vq~L~~~n~~L~----~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk 157 (214)
+|+.--.+|.+-|..-+.-++.....|- .+.+.+=+.+.+.|.|-...|.++.+|+--+.
T Consensus 40 AlIda~teY~kal~tLiSL~k~y~a~lgkln~~eeD~vWqvIi~~R~E~~~kk~e~~rlEs~w~ 103 (184)
T 1few_A 40 ALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWM 103 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556777777776666665443333 55666777788888888888888888875443
No 466
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=22.19 E-value=1.5e+02 Score=26.43 Aligned_cols=12 Identities=0% Similarity=0.086 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQL 110 (214)
Q Consensus 99 IL~dAI~yIk~L 110 (214)
.|.+...||+++
T Consensus 10 ~le~~~~~ik~~ 21 (323)
T 1lwu_B 10 EIENRYKEVKIR 21 (323)
T ss_dssp HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 467
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=22.14 E-value=2.2e+02 Score=20.33 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
|.+||.++..+..+.-.|-.+.-.+..++-+++.+
T Consensus 14 L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 14 IDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778877777777777666666666666655543
No 468
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.73 E-value=1.8e+02 Score=19.13 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 028060 117 LKETNEKLQEEIKSLK 132 (214)
Q Consensus 117 L~~~n~~L~~ei~eL~ 132 (214)
-+.+...|+.+|+.|.
T Consensus 10 AERsV~KLek~ID~LE 25 (52)
T 2z5i_A 10 LENEVARLKKLVDDLE 25 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 469
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=21.72 E-value=2.6e+02 Score=22.13 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNE-----LREEKLILKADKEKLEQ 154 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknE-----Lr~Ek~~Lk~e~e~L~~ 154 (214)
+++|..++.+|+.+-..+..+|+......+. +-.+..+.+.++.+|..
T Consensus 23 ~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~ 75 (179)
T 2gd5_A 23 MRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYA 75 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
No 470
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=21.65 E-value=1.9e+02 Score=19.33 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028060 127 EIKSLKAEKNELREEKLI 144 (214)
Q Consensus 127 ei~eL~~eknELr~Ek~~ 144 (214)
|+..|..-++||++|...
T Consensus 29 EV~~Le~NLrEL~~ei~~ 46 (51)
T 1yzm_A 29 EVRTLQENLRQLQDEYDQ 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 471
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.65 E-value=2.2e+02 Score=20.20 Aligned_cols=23 Identities=43% Similarity=0.460 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSL 131 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL 131 (214)
.|..+.+.|-.....+++++..+
T Consensus 10 ~l~~E~eel~~klk~~~ee~~~~ 32 (71)
T 1s1c_X 10 ILRRENEELTEKMKKAEEEYKLE 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 472
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=21.63 E-value=1.9e+02 Score=19.43 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028060 138 LREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 138 Lr~Ek~~Lk~e~e~L~~qlk 157 (214)
++..-..+..-++.+...|.
T Consensus 58 ~~~~~~~~~~~L~~i~~~L~ 77 (97)
T 2vs0_A 58 LSPKVEKFAQLLEEIKQQLN 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 473
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=21.52 E-value=1.9e+02 Score=21.63 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q 028060 99 ILDDAIRVLNQLRTESQELKETNEKLQEEIKSLKAEK-------------NELREEKLILKADKEKLEQQLK 157 (214)
Q Consensus 99 IL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~ek-------------nELr~Ek~~Lk~e~e~L~~qlk 157 (214)
-+.+|+.||+.++.+-+.--.-..+..+-.+..+.+. .+.-++...|-..-..|-..+.
T Consensus 6 ~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn 77 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFG 77 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 4679999999999875442222333333333333332 3455555555555555555554
No 474
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=21.46 E-value=2.4e+02 Score=20.60 Aligned_cols=28 Identities=14% Similarity=-0.059 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028060 135 KNELREEKLILKADKEKLEQQLKVMAMP 162 (214)
Q Consensus 135 knELr~Ek~~Lk~e~e~L~~qlk~~~~~ 162 (214)
.+....|.......++.|.++|..+++.
T Consensus 58 ~~~V~~eL~~sn~kl~~L~~eL~eL~a~ 85 (86)
T 1cxz_B 58 LGPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555566667777777777776553
No 475
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=21.42 E-value=1.4e+02 Score=21.52 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 107 LNQLRTESQELKETNEKLQEEIKSLKAEKNELRE 140 (214)
Q Consensus 107 Ik~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~ 140 (214)
|.+||.++..+..+.-.|-.+.-.+..++-+++.
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~ 52 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKK 52 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777776666666655555555555443
No 476
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=21.15 E-value=3.7e+02 Score=25.30 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVMAMPTG 164 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~~~~p~ 164 (214)
+|+.=.+|+.+..+.....+.-++++.+....+.+-++-...|+ +..| .++|++..||.
T Consensus 30 ~~~~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~--k~di-~Elks~~~PP~ 88 (536)
T 3err_A 30 LLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIK--KQHL-VEVRSMANPPA 88 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--HHHH-HHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHH-HHHHhcCCCcH
Confidence 33333444444444444444444444444444444444443332 1122 35666766654
No 477
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.13 E-value=1.8e+02 Score=28.88 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 114 SQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQL 156 (214)
Q Consensus 114 vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~ql 156 (214)
..+|++|.++|+++|++|+.-++.-..-+..++.|+..+..++
T Consensus 404 ~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ky 446 (716)
T 1zvu_A 404 EMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444333332223344455555555554
No 478
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=21.09 E-value=1.9e+02 Score=21.53 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 103 AIRVLNQLRTESQELKETNEKLQEEIKSLKAEKNELREE 141 (214)
Q Consensus 103 AI~yIk~Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~E 141 (214)
+..-|.+||.++..+..+.-.|-.+.-.+..++-+++.+
T Consensus 10 ~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 10 ILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788888888777777776666666666665544
No 479
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.90 E-value=1.9e+02 Score=22.31 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
+++.+|+.++.....+.++...+..+|......+-..+
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.83 E-value=1.7e+02 Score=23.49 Aligned_cols=29 Identities=3% Similarity=-0.028 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 109 QLRTESQELKETNEKLQEEIKSLKAEKNE 137 (214)
Q Consensus 109 ~Lr~~vq~L~~~n~~L~~ei~eL~~eknE 137 (214)
.|+.++++|+.....-..++.+|+...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 32 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQV 32 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444333344444444333
No 481
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.82 E-value=2.5e+02 Score=22.72 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 100 LDDAIRVLNQ-LRTESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 100 L~dAI~yIk~-Lr~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
|.+..+++.. .....+.|++..+.|++++++|+..+..|..-...++...
T Consensus 66 l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 66 LEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 482
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.80 E-value=1.1e+02 Score=22.59 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 110 LRTESQELKETNEKLQEEIKSLKA 133 (214)
Q Consensus 110 Lr~~vq~L~~~n~~L~~ei~eL~~ 133 (214)
|+++++.|+.+...|+.++..|+.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
No 483
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=20.62 E-value=2.3e+02 Score=23.82 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 115 QELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQ 155 (214)
Q Consensus 115 q~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~q 155 (214)
+++++.+..|+..+++|.++...|..+-..++.+|-+.-.+
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakk 50 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKK 50 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 484
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=20.55 E-value=3.2e+02 Score=21.66 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-H
Q 028060 73 ERLNDRFLDLSCILEPGRPARTDKPAILDDAIRVLNQLRTESQELKETNEKLQEEI--------KSLKAEKNELREEK-L 143 (214)
Q Consensus 73 dkLN~~F~~LrslLPP~~~~K~DKasIL~dAI~yIk~Lr~~vq~L~~~n~~L~~ei--------~eL~~eknELr~Ek-~ 143 (214)
+.++..+..|+.-|.|-. ..=...+..++-..=..|+..++.++.......+++ ++++..+..+-++. .
T Consensus 69 d~l~~~~~~l~~~L~P~t--~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~ 146 (165)
T 1gs9_A 69 KELKAYKSELEEQLTPVA--EETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRK 146 (165)
T ss_dssp HHHHHHHHHHTTSCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 028060 144 ILKADKEKLEQQL 156 (214)
Q Consensus 144 ~Lk~e~e~L~~ql 156 (214)
.+..+.+.|+.+|
T Consensus 147 ~~~~~~eeLr~kL 159 (165)
T 1gs9_A 147 RLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHh
No 485
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.44 E-value=76 Score=21.32 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 028060 140 EEKLILKADKEKLEQQ 155 (214)
Q Consensus 140 ~Ek~~Lk~e~e~L~~q 155 (214)
+|..+|..|||+|+.|
T Consensus 6 EEILRLErEIE~Lqrq 21 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRM 21 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 486
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.42 E-value=1.9e+02 Score=22.99 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADK 149 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~ 149 (214)
+++++|+.++.....+.++...+..+|......+-..+
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.23 E-value=2.4e+02 Score=22.36 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028060 116 ELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKL 152 (214)
Q Consensus 116 ~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L 152 (214)
.|.+....|+..+++|..+...|..+-..++.++.+.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=20.18 E-value=2.5e+02 Score=20.26 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028060 112 TESQELKETNEKLQEEIKSLKAEKNELREEKLILKADKEKLEQQLKVM 159 (214)
Q Consensus 112 ~~vq~L~~~n~~L~~ei~eL~~eknELr~Ek~~Lk~e~e~L~~qlk~~ 159 (214)
+..|+|.......+.+|+.|..++--.++++..+..+.+..-+.|..+
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELnsm 77 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLELNNM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcC
Done!