BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028062
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A
           Member Of A New Cystine-Rich Family
          Length = 80

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 14/89 (15%)

Query: 125 KQQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKAL 184
            + +CP     L  C+++LGG +         + CC L+ GL D++A VCLC  I+L+AL
Sbjct: 4   TRPSCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLC--IQLRAL 51

Query: 185 NLINLLVPISLQVLVNDCGKYPPAGFQCP 213
            ++NL    +LQ+++N CG+  P+   CP
Sbjct: 52  GILNL--NRNLQLILNSCGRSYPSNATCP 78


>pdb|2O0Q|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 From Caulobacter
           Crescentus. Northeast Structural Genomics Consortium
           Target Ccr55
          Length = 115

 Score = 30.8 bits (68), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 137 GACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL 169
           G+ VD+  G IH+  G+ A+E      +G A+L
Sbjct: 24  GSAVDLADGFIHLSAGEQAQETAAKWFRGQANL 56


>pdb|2JQN|A Chain A, Solution Nmr Structure Of Cc0527 From Caulobacter
           Crescentus. Northeast Structural Genomics Target Ccr55
          Length = 122

 Score = 30.8 bits (68), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 137 GACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL 169
           G+ VD+  G IH+  G+ A+E      +G A+L
Sbjct: 24  GSAVDLADGFIHLSAGEQAQETAAKWFRGQANL 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.142    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,849,282
Number of Sequences: 62578
Number of extensions: 77709
Number of successful extensions: 172
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 3
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)