Query 028062
Match_columns 214
No_of_seqs 135 out of 298
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:38:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14547 Hydrophob_seed: Hydro 100.0 1.3E-35 2.8E-40 225.4 5.1 85 128-213 1-85 (85)
2 cd01958 HPS_like HPS_like: Hyd 100.0 8.6E-36 1.9E-40 227.0 1.1 84 127-212 2-85 (85)
3 smart00499 AAI Plant lipid tra 97.2 0.00013 2.9E-09 49.8 1.2 76 129-212 1-79 (79)
4 cd04660 nsLTP_like nsLTP_like: 96.8 0.00028 6E-09 51.1 -0.5 70 132-212 4-73 (73)
5 PF14368 LTP_2: Probable lipid 96.4 0.0004 8.7E-09 50.6 -1.8 57 152-212 39-96 (96)
6 cd00010 AAI_LTSS AAI_LTSS: Alp 95.8 0.0037 8E-08 43.0 0.9 60 137-203 2-62 (63)
7 cd01959 nsLTP2 nsLTP2: Non-spe 95.7 0.0024 5.2E-08 46.5 -0.3 64 132-208 2-65 (66)
8 PF00234 Tryp_alpha_amyl: Prot 95.1 0.002 4.4E-08 46.9 -2.4 69 133-212 12-90 (90)
9 PF04554 Extensin_2: Extensin- 93.5 0.22 4.8E-06 36.5 5.2 32 67-98 16-47 (58)
10 cd01960 nsLTP1 nsLTP1: Non-spe 92.5 0.028 6E-07 41.6 -0.6 69 132-207 6-79 (89)
11 PF04554 Extensin_2: Extensin- 90.4 0.85 1.8E-05 33.5 5.3 26 70-96 30-56 (58)
12 PHA03247 large tegument protei 56.2 1.1E+02 0.0024 36.8 11.0 8 195-202 3111-3118(3151)
13 KOG3671 Actin regulatory prote 41.9 3.6E+02 0.0079 27.6 11.1 11 171-181 494-504 (569)
14 PF15240 Pro-rich: Proline-ric 30.1 26 0.00057 30.7 1.1 16 10-25 2-17 (179)
15 PF07172 GRP: Glycine rich pro 23.0 81 0.0017 24.6 2.6 18 9-26 7-24 (95)
16 PF11587 Prion_bPrPp: Major pr 22.9 65 0.0014 20.9 1.7 17 1-17 1-17 (29)
17 PHA03252 DNA packaging tegumen 22.9 53 0.0011 33.5 1.9 19 165-183 226-244 (589)
No 1
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=1.3e-35 Score=225.43 Aligned_cols=85 Identities=58% Similarity=1.189 Sum_probs=83.2
Q ss_pred CCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC
Q 028062 128 TCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP 207 (214)
Q Consensus 128 tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P 207 (214)
+||+|++|||+|+||| ||+++.+|.+.+++||++|+||+|+|||+|||+|+|+|+||+||+|+|+++++|+|.|||++|
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 6999999999999999 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCC
Q 028062 208 AGFQCP 213 (214)
Q Consensus 208 ~GF~C~ 213 (214)
+||+|+
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999996
No 2
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=8.6e-36 Score=227.04 Aligned_cols=84 Identities=57% Similarity=1.119 Sum_probs=81.7
Q ss_pred CCCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCC
Q 028062 127 QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYP 206 (214)
Q Consensus 127 ~tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~ 206 (214)
++||||++|||+|+|||| ++++.+|++.+++||++|+||+|+|||+|||||||+|+|| ||+|+|++|++|+|.|||++
T Consensus 2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~ 79 (85)
T cd01958 2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNV 79 (85)
T ss_pred CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcC
Confidence 689999999999999995 8888899999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcC
Q 028062 207 PAGFQC 212 (214)
Q Consensus 207 P~GF~C 212 (214)
|+||+|
T Consensus 80 P~gf~C 85 (85)
T cd01958 80 PPGFTC 85 (85)
T ss_pred CCCCcC
Confidence 999998
No 3
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=97.22 E-value=0.00013 Score=49.81 Aligned_cols=76 Identities=32% Similarity=0.664 Sum_probs=50.9
Q ss_pred CCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccc---cccchhhHHHhhhcCCC
Q 028062 129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLIN---LLVPISLQVLVNDCGKY 205 (214)
Q Consensus 129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlIn---lniPi~L~lLLN~CGK~ 205 (214)
|.....++..|.+.+.+.. ......+.||..++++. .+.|+|.+++..+.+.+. ++. .....|.+.||..
T Consensus 1 C~~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~-~~a~~lp~~C~~~ 73 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNA-QNAASLPSACGVP 73 (79)
T ss_pred ChhhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhH-HHHHhhHHhcCCC
Confidence 3344456667877664211 12346688999999987 778999999988777221 233 3555677899998
Q ss_pred CCCCCcC
Q 028062 206 PPAGFQC 212 (214)
Q Consensus 206 ~P~GF~C 212 (214)
.+. +.|
T Consensus 74 ~~~-~~C 79 (79)
T smart00499 74 PPY-TDC 79 (79)
T ss_pred CCC-CCC
Confidence 775 555
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=96.76 E-value=0.00028 Score=51.13 Aligned_cols=70 Identities=24% Similarity=0.411 Sum_probs=47.1
Q ss_pred cccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCCCCCc
Q 028062 132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPAGFQ 211 (214)
Q Consensus 132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P~GF~ 211 (214)
|...|..|...+.| -.-...+.+.||+-|+++ |. .|+|..++++.+.. ||... ...|.+.||..++. |+
T Consensus 4 ~~~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~--i~~~~-a~~Lp~~Cgv~~p~-~~ 72 (73)
T cd04660 4 DLDLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI--IDPDK-AVYLPAKCGLPLPP-SS 72 (73)
T ss_pred CHHHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc--cCHHH-HHHHHHHcCCCCCC-CC
Confidence 44567788776632 000123567799999974 32 39999998876653 44433 44677899999999 98
Q ss_pred C
Q 028062 212 C 212 (214)
Q Consensus 212 C 212 (214)
|
T Consensus 73 C 73 (73)
T cd04660 73 C 73 (73)
T ss_pred C
Confidence 8
No 5
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.36 E-value=0.0004 Score=50.58 Aligned_cols=57 Identities=25% Similarity=0.581 Sum_probs=34.4
Q ss_pred CCCCCCCCchhhhccccccchhhhhHHHhhhh-ccccccccchhhHHHhhhcCCCCCCCCcC
Q 028062 152 GDSAKEKCCPLLQGLADLDAAVCLCTAIRLKA-LNLINLLVPISLQVLVNDCGKYPPAGFQC 212 (214)
Q Consensus 152 G~P~~~pCCpLI~GLaDldAAvCLCtAIKAnV-LGlInlniPi~L~lLLN~CGK~~P~GF~C 212 (214)
+..+.+.||..++.+.+ ....|||..++... .+ +++|...++ .|...||...+. ++|
T Consensus 39 ~~~Ps~~CC~~l~~~~~-~~~~ClC~~~~~~~~~~-~~in~~~a~-~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 39 GPAPSAACCSALKSVVQ-ADPPCLCQLLNSPGAPG-FGINVTRAL-ALPAACGVPVPP-SKC 96 (96)
T ss_dssp -----HHHHHHHCC-----HCCHHHCCCC-CCHCH-HCCTCHHHH-HHHHHCTSS-S-----
T ss_pred CCCCCHHHHHHHHHhcc-CCCCCHHHhcCcccccc-CCcCHHHHH-HHHHHcCCCCCC-CCC
Confidence 34577889999999977 44999999999876 55 667766555 567899999998 887
No 6
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=95.78 E-value=0.0037 Score=43.04 Aligned_cols=60 Identities=27% Similarity=0.567 Sum_probs=38.6
Q ss_pred cccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhcccccc-ccchhhHHHhhhcC
Q 028062 137 GACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINL-LVPISLQVLVNDCG 203 (214)
Q Consensus 137 gvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInl-niPi~L~lLLN~CG 203 (214)
-.|.+.+.| -+..+.+.||.-++.+.+.| ..|||..+|....+...+ |. .....|.+.||
T Consensus 2 ~~C~~y~~~-----~~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~-~~a~~LP~~Cg 62 (63)
T cd00010 2 APCLSYLTG-----GATAPPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNA-TRALALPAACG 62 (63)
T ss_pred cchHHHHcC-----CCCCCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccH-HHHHhchHhcC
Confidence 457766642 11346678999999987664 569999999865442222 22 23445667787
No 7
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=95.72 E-value=0.0024 Score=46.54 Aligned_cols=64 Identities=22% Similarity=0.497 Sum_probs=46.4
Q ss_pred cccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCCC
Q 028062 132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPPA 208 (214)
Q Consensus 132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P~ 208 (214)
|..+|..|...+. .|.++..+||.-|+. +.-|||.-+|...|+ ..||.+.+++ |.+.||..+|.
T Consensus 2 ~~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~~A~~-l~~~Cgv~~P~ 65 (66)
T cd01959 2 NPTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSPNARK-VLAACGVPYPN 65 (66)
T ss_pred ChhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcHHHHH-HHHHcCCCCCC
Confidence 3457888987653 246788899999996 337999999876666 3456666665 56799998853
No 8
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=95.10 E-value=0.002 Score=46.86 Aligned_cols=69 Identities=29% Similarity=0.617 Sum_probs=48.3
Q ss_pred ccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhcccc----------ccccchhhHHHhhhc
Q 028062 133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLI----------NLLVPISLQVLVNDC 202 (214)
Q Consensus 133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlI----------nlniPi~L~lLLN~C 202 (214)
...|..|...+.|-. ....+.||.-|+.| ...|.|.+||..+.+++ .++.- ....|.+.|
T Consensus 12 ~~~l~~c~~~~~~~~-----~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C 81 (90)
T PF00234_consen 12 QVRLSPCLPYLQGGC-----QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMC 81 (90)
T ss_dssp SSHHHGGHHHHTTSS-----SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHT
T ss_pred cccccccHHHHhccc-----ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHC
Confidence 355777876664211 12456799999988 88999999999988721 44443 455688899
Q ss_pred CCCCCCCCcC
Q 028062 203 GKYPPAGFQC 212 (214)
Q Consensus 203 GK~~P~GF~C 212 (214)
|..++. |.|
T Consensus 82 ~v~~~~-~~C 90 (90)
T PF00234_consen 82 NVSPPY-TDC 90 (90)
T ss_dssp TSSSSS-S-G
T ss_pred CCCCCC-CCC
Confidence 999887 665
No 9
>PF04554 Extensin_2: Extensin-like region; InterPro: IPR006706 Extensins are homologous hydroxyproline-rich glycoproteins (HRGPs) found in the plant extracellular matrix. They form a structural component which strengthens the primary cell wall; they can account for up to 20% of the dry weight of the cell wall. The key to the role of HRGPs in cell wall self-assembly and cell extension lies in their chemistry, which is dependent on extensive post-translational modifications (PTMs): hydroxylation, glycosylation, and cross-linking. Repetitive peptide motifs characterise HRGPs.; GO: 0005199 structural constituent of cell wall, 0009664 plant-type cell wall organization
Probab=93.48 E-value=0.22 Score=36.54 Aligned_cols=32 Identities=69% Similarity=1.164 Sum_probs=16.4
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 028062 67 PPPVVKSAPPPPPPVAKSPPPPPPVVKSPPPP 98 (214)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~p~p~~~~pppp 98 (214)
...++++++++..+++++++++--.+++++++
T Consensus 16 p~~~Y~SPPPP~~Y~Y~SPPPP~y~Y~sPpPp 47 (58)
T PF04554_consen 16 PPYVYKSPPPPKPYVYKSPPPPVYKYKSPPPP 47 (58)
T ss_pred CCccccCCcCCCCcccCCCCCCcccccCCCCC
Confidence 33445555555445666665544444555444
No 10
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=92.48 E-value=0.028 Score=41.65 Aligned_cols=69 Identities=25% Similarity=0.415 Sum_probs=44.6
Q ss_pred cccCccccccccccccccccCCCCCCCCchhhhccccc----cchhhhhHHHhhhhccccc-cccchhhHHHhhhcCCCC
Q 028062 132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL----DAAVCLCTAIRLKALNLIN-LLVPISLQVLVNDCGKYP 206 (214)
Q Consensus 132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl----dAAvCLCtAIKAnVLGlIn-lniPi~L~lLLN~CGK~~ 206 (214)
...+|..|.+.+.|- +..+...||.-++.|.+. +...|+|.-++..+.+ +. ||...++ .|-..||-..
T Consensus 6 v~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~-~~~i~~~~a~-~LP~~C~v~~ 78 (89)
T cd01960 6 VTSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG-ISGLNPGRAA-GLPGKCGVSI 78 (89)
T ss_pred HHhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccc-cCCCCHHHHH-hChHhcccCC
Confidence 345778888887532 234667899999998654 2234666667776666 43 5544444 4667899875
Q ss_pred C
Q 028062 207 P 207 (214)
Q Consensus 207 P 207 (214)
+
T Consensus 79 ~ 79 (89)
T cd01960 79 P 79 (89)
T ss_pred C
Confidence 4
No 11
>PF04554 Extensin_2: Extensin-like region; InterPro: IPR006706 Extensins are homologous hydroxyproline-rich glycoproteins (HRGPs) found in the plant extracellular matrix. They form a structural component which strengthens the primary cell wall; they can account for up to 20% of the dry weight of the cell wall. The key to the role of HRGPs in cell wall self-assembly and cell extension lies in their chemistry, which is dependent on extensive post-translational modifications (PTMs): hydroxylation, glycosylation, and cross-linking. Repetitive peptide motifs characterise HRGPs.; GO: 0005199 structural constituent of cell wall, 0009664 plant-type cell wall organization
Probab=90.43 E-value=0.85 Score=33.52 Aligned_cols=26 Identities=69% Similarity=1.091 Sum_probs=11.1
Q ss_pred ccCCCCCCCCCCCCCCCCCC-CCcCCCC
Q 028062 70 VVKSAPPPPPPVAKSPPPPP-PVVKSPP 96 (214)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~p~-p~~~~pp 96 (214)
++++++++. .++++++++. -++++++
T Consensus 30 ~Y~SPPPP~-y~Y~sPpPp~~y~YkSPP 56 (58)
T PF04554_consen 30 VYKSPPPPV-YKYKSPPPPPHYVYKSPP 56 (58)
T ss_pred ccCCCCCCc-ccccCCCCCcCcccCCCC
Confidence 444444322 4444544443 3445443
No 12
>PHA03247 large tegument protein UL36; Provisional
Probab=56.19 E-value=1.1e+02 Score=36.83 Aligned_cols=8 Identities=50% Similarity=1.099 Sum_probs=3.4
Q ss_pred hHHHhhhc
Q 028062 195 LQVLVNDC 202 (214)
Q Consensus 195 L~lLLN~C 202 (214)
|.+|+..|
T Consensus 3111 lAlLi~AC 3118 (3151)
T PHA03247 3111 LAVLIEAC 3118 (3151)
T ss_pred HHHHHHHH
Confidence 33444444
No 13
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=41.91 E-value=3.6e+02 Score=27.61 Aligned_cols=11 Identities=27% Similarity=0.247 Sum_probs=4.7
Q ss_pred chhhhhHHHhh
Q 028062 171 AAVCLCTAIRL 181 (214)
Q Consensus 171 AAvCLCtAIKA 181 (214)
+-.=|...||+
T Consensus 494 gR~~LmaqIRq 504 (569)
T KOG3671|consen 494 GRDALMAQIRQ 504 (569)
T ss_pred cHHHHHHHHHh
Confidence 33334444543
No 14
>PF15240 Pro-rich: Proline-rich
Probab=30.08 E-value=26 Score=30.67 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhhhhcC
Q 028062 10 FILLLNLGTLLTSLAC 25 (214)
Q Consensus 10 ~~~~l~l~~l~~~~ac 25 (214)
|||||..++|+.|-|=
T Consensus 2 LlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQ 17 (179)
T ss_pred hhHHHHHHHHHhhhcc
Confidence 7889999999877664
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.05 E-value=81 Score=24.62 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhhhhhcCC
Q 028062 9 SFILLLNLGTLLTSLACD 26 (214)
Q Consensus 9 ~~~~~l~l~~l~~~~ac~ 26 (214)
+||.||+..+||.|-+..
T Consensus 7 llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 344444445555555443
No 16
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=22.87 E-value=65 Score=20.88 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.7
Q ss_pred CcchhhHHHHHHHHHHh
Q 028062 1 MGKYQLASSFILLLNLG 17 (214)
Q Consensus 1 ~~~~~~~~~~~~~l~l~ 17 (214)
|+|+++..|+++|+...
T Consensus 1 M~k~~lgcWilvLfvat 17 (29)
T PF11587_consen 1 MVKSHLGCWILVLFVAT 17 (29)
T ss_dssp --TTTTTTHHHHHHHHH
T ss_pred CccccccHHHHHHHHHH
Confidence 78888888876665543
No 17
>PHA03252 DNA packaging tegument protein UL25; Provisional
Probab=22.87 E-value=53 Score=33.46 Aligned_cols=19 Identities=42% Similarity=0.523 Sum_probs=16.1
Q ss_pred ccccccchhhhhHHHhhhh
Q 028062 165 GLADLDAAVCLCTAIRLKA 183 (214)
Q Consensus 165 GLaDldAAvCLCtAIKAnV 183 (214)
.|.|+|||+||=.+-++..
T Consensus 226 ~lSD~eAaLCLl~ay~~~~ 244 (589)
T PHA03252 226 VLSDLEAAACLLAAYYAAL 244 (589)
T ss_pred cccchhHHHHHHHHHHhcc
Confidence 6789999999999987643
Done!