Query 028062
Match_columns 214
No_of_seqs 135 out of 298
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 08:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 2.6E-30 9E-35 194.5 2.5 75 126-214 5-79 (80)
2 1l6h_A LTP2, non-specific lipi 96.3 0.00028 9.6E-09 50.1 -2.0 62 133-207 5-66 (69)
3 1n89_A Lipid transfer protein; 96.2 0.00064 2.2E-08 47.9 -0.6 62 133-207 4-65 (67)
4 2rkn_A DIR1 protein, AT5G48485 95.6 0.0019 6.6E-08 46.1 -0.1 72 127-207 3-74 (77)
5 2ljo_A Non-specific lipid-tran 94.2 0.0052 1.8E-07 46.1 -1.2 74 133-213 8-89 (93)
6 1siy_A LTP 1, NS-LTP1, nonspec 93.6 0.0078 2.7E-07 44.5 -1.1 75 129-213 3-88 (91)
7 2alg_A Non-specific lipid tran 93.1 0.0056 1.9E-07 45.3 -2.6 70 129-207 4-79 (92)
8 1bwo_A NS-LTP1, nonspecific li 92.8 0.0061 2.1E-07 45.0 -2.7 66 132-207 6-78 (90)
9 1afh_A Maize nonspecific lipid 92.7 0.0088 3E-07 44.3 -2.0 71 129-207 4-80 (93)
10 1t12_A LTP 1, nonspecific lipi 91.3 0.028 9.7E-07 41.6 -0.6 69 129-207 4-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.96 E-value=2.6e-30 Score=194.46 Aligned_cols=75 Identities=43% Similarity=1.021 Sum_probs=67.1
Q ss_pred CCCCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCC
Q 028062 126 QQTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKY 205 (214)
Q Consensus 126 ~~tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~ 205 (214)
.++|| |||+|+|||||++ | .+++||++|+||+|+|||+||||||| +|| | +|++++|++|+|.|||+
T Consensus 5 ~~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lg-i-lnlpv~L~llln~Cgk~ 70 (80)
T 1hyp_A 5 RPSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALG-I-LNLNRNLQLILNSCGRS 70 (80)
T ss_dssp -CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHT-C-SCHHHHHHHHHHHTTCS
T ss_pred CCCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccc-e-eecChhHHHHHHHhCCc
Confidence 46799 8999999998653 2 56789999999999999999999999 499 7 89999999999999999
Q ss_pred CCCCCcCCC
Q 028062 206 PPAGFQCPA 214 (214)
Q Consensus 206 ~P~GF~C~~ 214 (214)
+|+||+|+.
T Consensus 71 ~P~gF~C~~ 79 (80)
T 1hyp_A 71 YPSNATCPR 79 (80)
T ss_dssp SCCCCCCSC
T ss_pred CcCCCCCCC
Confidence 999999974
No 2
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=96.26 E-value=0.00028 Score=50.07 Aligned_cols=62 Identities=24% Similarity=0.514 Sum_probs=44.6
Q ss_pred ccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC
Q 028062 133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP 207 (214)
Q Consensus 133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P 207 (214)
..+|..|...+.| |..+...||.-|++ +..|||..+|...++ ..||...+.+ |...||..+|
T Consensus 5 ~~~L~pC~~~v~~------~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P 66 (69)
T 1l6h_A 5 AGQLTVCTGAIAG------GARPTAACCSSLRA-----QQGCFCQFAKDPRYG-RYVNSPNARK-AVSSCGIALP 66 (69)
T ss_dssp TTTHHHHHHHHTT------CCSTTHHHHHHHHH-----HHHHHHHHTTCSSHH-HHTTTTTGGG-CCCCCSSCSC
T ss_pred hhhcccCHHHHcC------CCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence 3467889776632 34566789999985 488999999866555 4566665665 5679999886
No 3
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=96.17 E-value=0.00064 Score=47.95 Aligned_cols=62 Identities=21% Similarity=0.479 Sum_probs=45.0
Q ss_pred ccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC
Q 028062 133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP 207 (214)
Q Consensus 133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P 207 (214)
..+|..|...+.| |..+...||.-|++ +..|||..+|.-.++ ..||...+.+ |...||..+|
T Consensus 4 ~~~L~pC~~~v~~------~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P 65 (67)
T 1n89_A 4 ASQLAVCASAILS------GAKPSGECCGNLRA-----QQGCFCQYAKDPTYG-QYIRSPHARD-TLTSCGLAVP 65 (67)
T ss_dssp SSTTHHHHHHHTT------CCCCCHHHHHHHHH-----HSSHHHHGGGCSTTH-HHHTCHHHHH-HHHHHTSCCS
T ss_pred hhhcccCHHHHcC------CCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence 3467888776631 34566789999985 488999999876666 4566666665 5579999887
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=95.62 E-value=0.0019 Score=46.12 Aligned_cols=72 Identities=24% Similarity=0.409 Sum_probs=46.8
Q ss_pred CCCCccccCccccccccccccccccCCCCCCCCchhhhccccccchhhhhHHHhhhhccccccccchhhHHHhhhcCCCC
Q 028062 127 QTCPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLDAAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYP 206 (214)
Q Consensus 127 ~tCP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDldAAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~ 206 (214)
..|-.+..+|..|.+.+.| +-+..+...||.-|++ +| ..|||..++...++-++||...+++ |...||..+
T Consensus 3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gin~~~A~~-LP~~Cgv~~ 73 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGVDPELASA-LPKQCGLAN 73 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTBCHHHHHH-HHHHTTCSC
T ss_pred chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCcCHHHHHH-HHHHcCCCC
Confidence 4677777888889877742 1113456679999998 33 3899998883222212244444654 667999987
Q ss_pred C
Q 028062 207 P 207 (214)
Q Consensus 207 P 207 (214)
|
T Consensus 74 p 74 (77)
T 2rkn_A 74 A 74 (77)
T ss_dssp C
T ss_pred C
Confidence 6
No 5
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=94.16 E-value=0.0052 Score=46.07 Aligned_cols=74 Identities=22% Similarity=0.436 Sum_probs=48.7
Q ss_pred ccCccccccccccccccccCCCCCCCCchhhhcccccc----chhhhhHHHhhhhccccccccchhhHHHhhhcCCCCC-
Q 028062 133 ALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLD----AAVCLCTAIRLKALNLINLLVPISLQVLVNDCGKYPP- 207 (214)
Q Consensus 133 aLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDld----AAvCLCtAIKAnVLGlInlniPi~L~lLLN~CGK~~P- 207 (214)
...|.-|.+.+.| |..+...||.-+++|.+.- .-.|+|..||...-++.+||...+. .|-..||-.+|
T Consensus 8 ~~~L~pCl~Yv~g------~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~-~LP~~CgV~~p~ 80 (93)
T 2ljo_A 8 TSDLSPCLTYLTG------GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAA-ALPGKCGVNIPY 80 (93)
T ss_dssp HHHHHHHHHHHTT------SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHH-HHHHHHTCCCSS
T ss_pred HHHHHhHHHHHcC------CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHH-hhhHhcCCCCCC
Confidence 3456667666532 2335668999999886542 2469999898665443455655454 47789999988
Q ss_pred ---CCCcCC
Q 028062 208 ---AGFQCP 213 (214)
Q Consensus 208 ---~GF~C~ 213 (214)
..+.|.
T Consensus 81 ~Is~~~dC~ 89 (93)
T 2ljo_A 81 KISTTTNCN 89 (93)
T ss_dssp CCSTTCCGG
T ss_pred CCCCCCCCC
Confidence 566664
No 6
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=93.63 E-value=0.0078 Score=44.46 Aligned_cols=75 Identities=24% Similarity=0.484 Sum_probs=47.8
Q ss_pred CCccccCccccccccccccccccCCCCCCCCchhhhccccc-----c-chhhhhHHHhhhhcccc-ccccchhhHHHhhh
Q 028062 129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL-----D-AAVCLCTAIRLKALNLI-NLLVPISLQVLVND 201 (214)
Q Consensus 129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl-----d-AAvCLCtAIKAnVLGlI-nlniPi~L~lLLN~ 201 (214)
|-....+|..|.+.+.| |..+...||.-|++|.+. | .+.|||. |...-+ + +||...+++ |...
T Consensus 3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~-~~~in~~~A~~-LP~~ 72 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGA-VRGINPNNAEA-LPGK 72 (91)
T ss_dssp TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTC-CSSCCHHHHHH-HHHH
T ss_pred HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccc-cCCcCHHHHHH-HHHH
Confidence 55556678888877742 223566799999998643 3 3689996 433222 3 455555654 6679
Q ss_pred cCCCCC----CCCcCC
Q 028062 202 CGKYPP----AGFQCP 213 (214)
Q Consensus 202 CGK~~P----~GF~C~ 213 (214)
||..+| ..+.|.
T Consensus 73 Cgv~~p~~is~~~dC~ 88 (91)
T 1siy_A 73 CGVNIPYKISTSTNCN 88 (91)
T ss_dssp HTCCCSSCSCTTSCSS
T ss_pred cCCCCCCCCCCCCCCc
Confidence 999865 355553
No 7
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=93.09 E-value=0.0056 Score=45.30 Aligned_cols=70 Identities=23% Similarity=0.488 Sum_probs=45.8
Q ss_pred CCccccCccccccccccccccccCCCCCCCCchhhhccccc-----c-chhhhhHHHhhhhccccccccchhhHHHhhhc
Q 028062 129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL-----D-AAVCLCTAIRLKALNLINLLVPISLQVLVNDC 202 (214)
Q Consensus 129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl-----d-AAvCLCtAIKAnVLGlInlniPi~L~lLLN~C 202 (214)
|-....+|..|.+.+.| |..+...||.-|++|.+. | .+.|||...++.-++ +||...+++ |...|
T Consensus 4 C~~v~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~--~in~~~A~~-LP~~C 74 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP--GVNPNNAAA-LPGKC 74 (92)
T ss_dssp HHHHHHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST--TCCHHHHHH-HHHHT
T ss_pred hHHHHHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC--ccChHHHHH-HHHHc
Confidence 43344578888877742 223445799999998632 2 268999976666553 344444554 66799
Q ss_pred CCCCC
Q 028062 203 GKYPP 207 (214)
Q Consensus 203 GK~~P 207 (214)
|-.+|
T Consensus 75 gv~~p 79 (92)
T 2alg_A 75 GVSIP 79 (92)
T ss_dssp TCCCS
T ss_pred CCCCC
Confidence 99876
No 8
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=92.84 E-value=0.0061 Score=45.03 Aligned_cols=66 Identities=23% Similarity=0.430 Sum_probs=42.0
Q ss_pred cccCccccccccccccccccCCCCCCCCchhhhcccccc------chhhhhHHHhhhhcccc-ccccchhhHHHhhhcCC
Q 028062 132 DALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLD------AAVCLCTAIRLKALNLI-NLLVPISLQVLVNDCGK 204 (214)
Q Consensus 132 DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDld------AAvCLCtAIKAnVLGlI-nlniPi~L~lLLN~CGK 204 (214)
...+|..|.+.+.| |..+...||.-+++|.+.- .+.|||. |....+ + +||...++ .|...||-
T Consensus 6 v~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClCl--k~~~~~-~~~in~~~A~-~LP~~C~v 75 (90)
T 1bwo_A 6 VDSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCL--KGIARG-IHNLNEDNAR-SIPPKCGV 75 (90)
T ss_dssp HHHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHH--HHHHTT-CTTCCHHHHH-THHHHHTC
T ss_pred HHHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCc--cCchhc-cCCcCHHHHH-HHHHHcCC
Confidence 34567888887742 2225667999999986421 3789994 543322 2 34544455 46679999
Q ss_pred CCC
Q 028062 205 YPP 207 (214)
Q Consensus 205 ~~P 207 (214)
.++
T Consensus 76 ~~p 78 (90)
T 1bwo_A 76 NLP 78 (90)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 9
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=92.72 E-value=0.0088 Score=44.32 Aligned_cols=71 Identities=21% Similarity=0.457 Sum_probs=45.3
Q ss_pred CCccccCccccccccccccccccCCCCCCCCchhhhccccc---c---chhhhhHHHhhhhccccccccchhhHHHhhhc
Q 028062 129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADL---D---AAVCLCTAIRLKALNLINLLVPISLQVLVNDC 202 (214)
Q Consensus 129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDl---d---AAvCLCtAIKAnVLGlInlniPi~L~lLLN~C 202 (214)
|-....+|..|.+.+.| -+..+...||.-|++|.+. . .+.|||....+.-++ +||...+++ |-..|
T Consensus 4 C~~v~~~L~pCl~y~~~-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~--~in~~~A~~-LP~~C 75 (93)
T 1afh_A 4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS--GLNAGNAAS-IPSKC 75 (93)
T ss_dssp SHHHHHHHGGGHHHHTT-----SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST--TCCHHHHHH-HHHHH
T ss_pred hHHHHHhccCcHHHHcC-----CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc--CcCHHHHHH-HHHHc
Confidence 54455678889887743 1233555799999998532 1 278999755554442 344444554 66799
Q ss_pred CCCCC
Q 028062 203 GKYPP 207 (214)
Q Consensus 203 GK~~P 207 (214)
|-.++
T Consensus 76 ~v~~p 80 (93)
T 1afh_A 76 GVSIP 80 (93)
T ss_dssp HCCCS
T ss_pred CCCCC
Confidence 98765
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=91.33 E-value=0.028 Score=41.56 Aligned_cols=69 Identities=22% Similarity=0.460 Sum_probs=43.3
Q ss_pred CCccccCccccccccccccccccCCCCCCCCchhhhcccccc------chhhhhHHHhhhhccccccccchhhHHHhhhc
Q 028062 129 CPIDALKLGACVDVLGGLIHIGLGDSAKEKCCPLLQGLADLD------AAVCLCTAIRLKALNLINLLVPISLQVLVNDC 202 (214)
Q Consensus 129 CP~DaLKLgvCanVLgGLv~~~lG~P~~~pCCpLI~GLaDld------AAvCLCtAIKAnVLGlInlniPi~L~lLLN~C 202 (214)
|-....+|..|.+.+.| -+. +. .||.-|++|.+.- .+.|||..--++-++ .||...+++ |-..|
T Consensus 4 C~~v~~~L~pCl~y~~~-----~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A~~-LP~~C 73 (91)
T 1t12_A 4 CGQVTSNLAPCLAYLRN-----TGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS--GINLGKAAG-LPSTC 73 (91)
T ss_dssp HHHHHHHTHHHHHHHTT-----SSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT--TCCHHHHHH-HHHHT
T ss_pred hHHHHHhccCcHHHHcC-----CCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC--CcChhHHHH-HHHHc
Confidence 43345677888877743 123 55 8999999986531 379999632233442 344444554 66799
Q ss_pred CCCCC
Q 028062 203 GKYPP 207 (214)
Q Consensus 203 GK~~P 207 (214)
|-.++
T Consensus 74 ~v~~p 78 (91)
T 1t12_A 74 GVNIP 78 (91)
T ss_dssp TCCCS
T ss_pred CCCCC
Confidence 99865
Done!