Query 028063
Match_columns 214
No_of_seqs 151 out of 185
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1689 mRNA cleavage factor I 100.0 9.3E-97 2E-101 620.1 12.7 195 19-214 27-221 (221)
2 PF13869 NUDIX_2: Nucleotide h 100.0 2E-95 4E-100 618.1 14.0 188 19-207 1-188 (188)
3 cd03428 Ap4A_hydrolase_human_l 99.2 1.3E-10 2.9E-15 89.6 9.4 56 60-115 1-56 (130)
4 cd03673 Ap6A_hydrolase Diadeno 99.1 9.7E-10 2.1E-14 84.1 11.3 111 61-188 1-115 (131)
5 PRK09438 nudB dihydroneopterin 99.1 1.2E-09 2.5E-14 87.1 11.3 114 61-187 7-127 (148)
6 cd04688 Nudix_Hydrolase_29 Mem 99.1 1.2E-09 2.6E-14 84.3 10.9 106 62-187 2-116 (126)
7 cd04684 Nudix_Hydrolase_25 Con 99.1 9.9E-10 2.1E-14 83.7 10.0 107 63-187 2-115 (128)
8 cd04679 Nudix_Hydrolase_20 Mem 99.1 2.3E-09 4.9E-14 82.7 12.0 63 61-133 2-68 (125)
9 PRK15434 GDP-mannose mannosyl 99.1 7E-10 1.5E-14 92.0 8.9 67 58-132 14-84 (159)
10 cd04682 Nudix_Hydrolase_23 Mem 99.1 1.9E-09 4E-14 83.2 10.3 105 63-190 2-115 (122)
11 cd04670 Nudix_Hydrolase_12 Mem 99.0 1.5E-09 3.2E-14 84.0 8.7 63 61-133 2-67 (127)
12 cd04667 Nudix_Hydrolase_10 Mem 99.0 6.5E-10 1.4E-14 84.5 6.3 48 66-115 3-50 (112)
13 PRK15472 nucleoside triphospha 99.0 1.2E-09 2.7E-14 86.3 8.1 51 62-115 4-60 (141)
14 PF00293 NUDIX: NUDIX domain; 99.0 2.7E-09 5.8E-14 81.1 9.2 104 61-186 2-116 (134)
15 cd04669 Nudix_Hydrolase_11 Mem 99.0 1.2E-09 2.7E-14 84.7 7.3 49 77-132 13-64 (121)
16 cd04686 Nudix_Hydrolase_27 Mem 99.0 1.7E-09 3.6E-14 85.2 7.7 49 63-115 2-51 (131)
17 cd04700 DR1025_like DR1025 fro 99.0 2.1E-09 4.6E-14 86.0 8.2 70 54-133 2-79 (142)
18 cd03430 GDPMH GDP-mannose glyc 99.0 2.2E-09 4.8E-14 86.3 8.4 53 60-115 11-67 (144)
19 cd04678 Nudix_Hydrolase_19 Mem 99.0 3.2E-09 6.9E-14 82.1 8.3 63 61-133 2-68 (129)
20 cd04677 Nudix_Hydrolase_18 Mem 98.9 1E-08 2.2E-13 79.1 10.7 112 61-188 7-121 (132)
21 cd04687 Nudix_Hydrolase_28 Mem 98.9 3E-09 6.5E-14 82.5 7.7 51 61-115 1-54 (128)
22 PLN02325 nudix hydrolase 98.9 3.5E-09 7.5E-14 85.4 8.3 64 59-133 7-74 (144)
23 cd04689 Nudix_Hydrolase_30 Mem 98.9 8E-09 1.7E-13 79.6 9.9 86 62-167 2-88 (125)
24 cd04680 Nudix_Hydrolase_21 Mem 98.9 1.4E-08 3E-13 76.9 10.7 101 64-188 3-107 (120)
25 cd04676 Nudix_Hydrolase_17 Mem 98.9 6.2E-09 1.3E-13 78.8 8.6 53 60-115 1-54 (129)
26 cd03426 CoAse Coenzyme A pyrop 98.9 4.8E-09 1E-13 85.3 8.3 55 61-115 1-62 (157)
27 PRK10546 pyrimidine (deoxy)nuc 98.9 4.7E-09 1E-13 81.6 7.8 61 62-132 4-69 (135)
28 cd04672 Nudix_Hydrolase_14 Mem 98.9 8.3E-09 1.8E-13 79.7 9.1 65 61-136 2-67 (123)
29 cd04511 Nudix_Hydrolase_4 Memb 98.9 5.6E-09 1.2E-13 81.6 7.7 50 76-132 24-77 (130)
30 cd04695 Nudix_Hydrolase_36 Mem 98.9 4.7E-09 1E-13 82.2 6.9 54 63-116 1-57 (131)
31 cd03671 Ap4A_hydrolase_plant_l 98.9 2.4E-08 5.2E-13 79.9 10.1 115 61-190 3-132 (147)
32 cd03672 Dcp2p mRNA decapping e 98.9 7.9E-09 1.7E-13 83.7 7.3 51 64-115 3-54 (145)
33 cd04696 Nudix_Hydrolase_37 Mem 98.8 1E-08 2.3E-13 79.1 7.6 50 63-115 4-55 (125)
34 cd04690 Nudix_Hydrolase_31 Mem 98.8 1.7E-08 3.6E-13 76.6 8.6 63 64-136 3-68 (118)
35 cd04691 Nudix_Hydrolase_32 Mem 98.8 1.7E-08 3.7E-13 77.9 8.4 49 63-115 2-56 (117)
36 cd04671 Nudix_Hydrolase_13 Mem 98.8 1.4E-08 3E-13 79.7 7.9 97 64-186 2-107 (123)
37 cd04664 Nudix_Hydrolase_7 Memb 98.8 1.6E-08 3.4E-13 78.4 7.5 51 65-115 4-57 (129)
38 cd04673 Nudix_Hydrolase_15 Mem 98.8 2.1E-08 4.6E-13 75.9 8.1 60 63-133 2-65 (122)
39 cd04683 Nudix_Hydrolase_24 Mem 98.8 1.9E-08 4.2E-13 76.6 7.7 48 64-115 3-55 (120)
40 COG1051 ADP-ribose pyrophospha 98.8 2.5E-08 5.3E-13 81.2 8.8 68 61-139 10-81 (145)
41 PLN02709 nudix hydrolase 98.8 1.1E-07 2.4E-12 83.5 13.2 103 58-165 29-150 (222)
42 PRK10707 putative NUDIX hydrol 98.8 7.1E-08 1.5E-12 82.0 11.5 55 61-116 30-91 (190)
43 cd04666 Nudix_Hydrolase_9 Memb 98.8 2.9E-08 6.3E-13 78.0 8.4 63 64-133 2-67 (122)
44 TIGR00586 mutt mutator mutT pr 98.8 2.7E-08 5.9E-13 76.1 7.9 52 61-115 4-60 (128)
45 cd03427 MTH1 MutT homolog-1 (M 98.8 2.8E-08 6.1E-13 77.4 7.8 51 76-133 12-66 (137)
46 cd03674 Nudix_Hydrolase_1 Memb 98.8 2.4E-08 5.2E-13 79.1 7.3 52 62-115 3-55 (138)
47 cd04685 Nudix_Hydrolase_26 Mem 98.8 1.2E-07 2.5E-12 75.8 11.2 51 62-115 1-57 (133)
48 TIGR02705 nudix_YtkD nucleosid 98.7 1.1E-07 2.4E-12 79.2 10.9 91 77-189 36-127 (156)
49 cd03424 ADPRase_NUDT5 ADP-ribo 98.7 1.3E-07 2.8E-12 73.8 10.7 51 62-115 3-58 (137)
50 cd04681 Nudix_Hydrolase_22 Mem 98.7 3.7E-08 8E-13 76.1 7.5 49 65-115 4-56 (130)
51 cd03675 Nudix_Hydrolase_2 Cont 98.7 4.4E-08 9.6E-13 76.2 7.9 39 77-115 12-53 (134)
52 PRK10776 nucleoside triphospha 98.7 3.8E-08 8.2E-13 74.9 7.0 52 62-115 4-60 (129)
53 cd04674 Nudix_Hydrolase_16 Mem 98.7 1.1E-07 2.5E-12 75.4 9.3 89 77-170 16-115 (118)
54 cd04665 Nudix_Hydrolase_8 Memb 98.7 9.1E-08 2E-12 75.6 8.4 53 77-136 12-64 (118)
55 cd04663 Nudix_Hydrolase_6 Memb 98.7 8.9E-08 1.9E-12 77.1 7.8 51 64-115 3-53 (126)
56 cd04699 Nudix_Hydrolase_39 Mem 98.7 1.1E-07 2.5E-12 72.4 7.7 40 76-115 13-58 (129)
57 cd02885 IPP_Isomerase Isopente 98.6 2.2E-07 4.8E-12 76.0 9.7 113 59-190 27-149 (165)
58 cd04661 MRP_L46 Mitochondrial 98.6 7.3E-08 1.6E-12 76.2 6.5 41 75-115 12-55 (132)
59 PRK00714 RNA pyrophosphohydrol 98.6 1.7E-07 3.7E-12 76.6 8.2 54 59-115 6-61 (156)
60 cd04694 Nudix_Hydrolase_35 Mem 98.6 1.8E-07 3.8E-12 75.9 8.2 50 64-115 3-58 (143)
61 PRK05379 bifunctional nicotina 98.6 3.4E-07 7.4E-12 83.9 10.7 51 61-115 203-257 (340)
62 cd03425 MutT_pyrophosphohydrol 98.6 2.5E-07 5.3E-12 69.2 7.8 50 64-115 3-57 (124)
63 cd04693 Nudix_Hydrolase_34 Mem 98.6 1.5E-07 3.3E-12 72.8 6.3 49 63-115 2-57 (127)
64 cd03429 NADH_pyrophosphatase N 98.5 1.8E-07 4E-12 73.7 6.5 99 65-188 3-106 (131)
65 cd02883 Nudix_Hydrolase Nudix 98.5 1.4E-06 2.9E-11 64.2 10.5 50 63-115 2-54 (123)
66 cd04692 Nudix_Hydrolase_33 Mem 98.5 3.3E-07 7E-12 73.0 7.1 54 62-115 3-63 (144)
67 PRK15393 NUDIX hydrolase YfcD; 98.5 1.2E-06 2.6E-11 73.3 10.8 80 19-116 10-96 (180)
68 PRK03759 isopentenyl-diphospha 98.5 4.3E-07 9.2E-12 75.9 7.8 59 55-115 27-92 (184)
69 PRK11762 nudE adenosine nucleo 98.5 4.7E-07 1E-11 75.7 7.7 96 74-189 57-159 (185)
70 cd04697 Nudix_Hydrolase_38 Mem 98.4 1E-06 2.2E-11 68.7 7.8 51 63-116 2-59 (126)
71 cd04662 Nudix_Hydrolase_5 Memb 98.3 1.5E-06 3.3E-11 70.2 7.2 50 66-115 4-62 (126)
72 COG0494 MutT NTP pyrophosphohy 98.3 2.4E-06 5.3E-11 63.3 7.6 51 64-115 13-66 (161)
73 PRK08999 hypothetical protein; 98.3 1.6E-06 3.4E-11 77.2 7.0 41 76-116 17-62 (312)
74 PRK00241 nudC NADH pyrophospha 98.2 3.2E-06 7E-11 75.1 6.1 40 76-115 143-185 (256)
75 KOG2839 Diadenosine and diphos 98.1 1.6E-05 3.4E-10 66.0 7.7 88 54-156 2-91 (145)
76 TIGR00052 nudix-type nucleosid 98.1 1E-05 2.2E-10 68.4 6.6 102 66-188 48-164 (185)
77 TIGR02150 IPP_isom_1 isopenten 98.1 1.5E-05 3.3E-10 65.1 7.3 56 57-116 22-84 (158)
78 cd03670 ADPRase_NUDT9 ADP-ribo 98.0 9.4E-06 2E-10 69.5 5.7 43 73-115 46-89 (186)
79 cd03676 Nudix_hydrolase_3 Memb 97.8 5.4E-05 1.2E-09 62.6 7.2 123 56-190 26-159 (180)
80 PRK10729 nudF ADP-ribose pyrop 97.8 0.0001 2.2E-09 63.4 8.3 104 64-188 51-170 (202)
81 PLN03143 nudix hydrolase; Prov 97.7 0.0001 2.2E-09 67.2 6.4 54 63-116 129-189 (291)
82 cd03431 DNA_Glycosylase_C DNA 97.3 0.00098 2.1E-08 49.7 6.8 39 76-114 14-57 (118)
83 KOG3069 Peroxisomal NUDIX hydr 96.9 0.0024 5.1E-08 57.1 6.5 99 61-164 42-157 (246)
84 PRK15009 GDP-mannose pyrophosp 96.9 0.0041 8.9E-08 53.1 7.5 103 64-188 47-165 (191)
85 PLN02791 Nudix hydrolase homol 96.7 0.0054 1.2E-07 62.6 8.2 62 54-116 24-92 (770)
86 KOG0648 Predicted NUDIX hydrol 96.6 0.0032 6.8E-08 57.8 5.0 51 62-115 116-172 (295)
87 KOG3084 NADH pyrophosphatase I 96.3 0.0076 1.6E-07 56.0 5.8 61 65-132 189-252 (345)
88 COG2816 NPY1 NTP pyrophosphohy 96.0 0.013 2.8E-07 53.5 5.5 53 61-115 142-197 (279)
89 KOG3041 Nucleoside diphosphate 95.8 0.029 6.3E-07 49.3 6.6 108 63-188 75-193 (225)
90 KOG4195 Transient receptor pot 95.8 0.011 2.3E-07 52.9 4.0 38 76-113 139-177 (275)
91 PLN02552 isopentenyl-diphospha 95.7 0.037 8.1E-07 49.4 7.0 58 57-116 51-132 (247)
92 COG4119 Predicted NTP pyrophos 92.0 0.35 7.6E-06 40.2 5.2 52 65-116 6-66 (161)
93 PF14815 NUDIX_4: NUDIX domain 88.7 0.69 1.5E-05 35.1 4.1 74 76-170 9-87 (114)
94 PLN02839 nudix hydrolase 87.9 3 6.6E-05 39.7 8.5 50 68-117 210-266 (372)
95 cd08071 MPN_DUF2466 Mov34/MPN/ 60.8 4.6 0.0001 31.6 1.2 35 59-111 55-89 (113)
96 PRK00024 hypothetical protein; 56.0 8 0.00017 33.9 2.1 40 59-115 161-202 (224)
97 COG1443 Idi Isopentenyldiphosp 52.7 20 0.00043 31.2 3.8 45 73-117 42-93 (185)
98 TIGR00608 radc DNA repair prot 50.4 13 0.00028 32.7 2.4 40 59-115 155-196 (218)
99 KOG2937 Decapping enzyme compl 41.3 11 0.00025 35.5 0.7 121 54-178 74-203 (348)
100 PF06404 PSK: Phytosulfokine p 38.8 24 0.00051 26.6 2.0 18 94-111 51-68 (81)
101 COG4004 Uncharacterized protei 30.0 2.4E+02 0.0053 22.1 6.3 67 45-114 14-82 (96)
102 cd08059 MPN_prok_mb Mpr1p, Pad 27.1 53 0.0011 24.4 2.2 28 62-106 54-81 (101)
103 KOG4548 Mitochondrial ribosoma 26.7 1.3E+02 0.0027 27.7 4.8 39 77-115 140-182 (263)
104 PF04002 RadC: RadC-like JAB d 26.0 36 0.00077 26.9 1.1 27 60-103 61-87 (123)
105 TIGR00568 alkb DNA alkylation 23.8 2.5E+02 0.0054 23.6 5.9 62 100-173 74-137 (169)
106 PF07026 DUF1317: Protein of u 23.4 1.4E+02 0.0031 21.6 3.7 29 86-114 22-50 (60)
107 PF06453 LT-IIB: Type II heat- 22.2 2E+02 0.0044 23.2 4.7 80 48-137 26-112 (122)
108 KOG0422 Ubiquitin-protein liga 20.2 69 0.0015 27.0 1.8 31 140-173 58-88 (153)
No 1
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=100.00 E-value=9.3e-97 Score=620.11 Aligned_cols=195 Identities=56% Similarity=1.005 Sum_probs=191.6
Q ss_pred ceEEEeeCCceeeccccCCCCCChhHHHHHHHHHHhhcccCCeeEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCC
Q 028063 19 YVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPG 98 (214)
Q Consensus 19 ~~~~~Ypl~nY~fg~k~~~~ekd~sv~~rl~Rl~~~y~~~GmRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~g 98 (214)
++|++||||||+|||||++.|||+||++||+||+++|++.||||||+||++||+|++|||||||++|+|||||||+|+||
T Consensus 27 ~~vn~YPLsnYtFGtKe~~~eKD~svadrf~rmk~ey~k~gmRrsvegvlivheH~lPHvLLLQig~tf~KLPGG~L~pG 106 (221)
T KOG1689|consen 27 RTVNLYPLSNYTFGTKEALREKDESVADRFARMKIEYMKEGMRRSVEGVLIVHEHNLPHVLLLQIGNTFFKLPGGRLRPG 106 (221)
T ss_pred heeeeeecccccccccchhhhccchHHHHHHHHHHHHHhhhhhheeeeeEEEeecCCCeEEEEeeCCEEEecCCCccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCCCCCCCCCCCCCCcceeeEEEEEEcCCceEEeecCCCeE
Q 028063 99 ESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKL 178 (214)
Q Consensus 99 E~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpkn~kL 178 (214)
|+|++||+|.|+|.||. .++...+|.||||+|+|||||||+.|||||||||||||||+|||+||||++..|+||||+||
T Consensus 107 E~e~~Gl~r~l~~~Lgr-~dg~~~dwtv~ecig~WWRPNFe~~~YPyiP~hitkPKeh~kL~lV~L~~k~~F~VPKN~KL 185 (221)
T KOG1689|consen 107 EDEADGLKRLLTESLGR-SDGLVIDWTVGECIGNWWRPNFETPMYPYIPPHITKPKEHTKLFLVQLPEKQQFAVPKNFKL 185 (221)
T ss_pred cchhHHHHHHHHHHhcc-cccccccccHhhhhhcccCCCCCCcccCCCCcccCCchhccEEEEEEccccceEeccCCcee
Confidence 99999999999999995 57888999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhcCcccccceeecccceeeeeEEEEecC
Q 028063 179 LAVPLCQIHENHKTYGQIISGVPQLLSKFSFNIIAS 214 (214)
Q Consensus 179 ~AvPLfely~N~~~yG~~is~iP~llSRf~f~~~~~ 214 (214)
+||||||||||++.||||||+||++||||||+|+.+
T Consensus 186 lA~PLfeLydN~~~yGPiiSslp~~lsrFnFi~n~~ 221 (221)
T KOG1689|consen 186 LAVPLFELYDNAKTYGPIISSLPKLLSRFNFIMNEI 221 (221)
T ss_pred eeeeHhhhhhccccccchhHHHHHHHhhhceeeccC
Confidence 999999999999999999999999999999999864
No 2
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=100.00 E-value=2e-95 Score=618.13 Aligned_cols=188 Identities=59% Similarity=1.095 Sum_probs=161.7
Q ss_pred ceEEEeeCCceeeccccCCCCCChhHHHHHHHHHHhhcccCCeeEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCC
Q 028063 19 YVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPG 98 (214)
Q Consensus 19 ~~~~~Ypl~nY~fg~k~~~~ekd~sv~~rl~Rl~~~y~~~GmRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~g 98 (214)
++|+||||+||+||+||++.|||+|+++||+||+++|+++||||||+||||||+|+||||||||+++++|+||||+|++|
T Consensus 1 ~~~~iYPlsnY~Fg~ke~~~ekd~s~~~rl~rl~~~y~~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~~fkLPGg~l~~g 80 (188)
T PF13869_consen 1 QTIRIYPLSNYTFGTKEAQPEKDPSVAARLQRLKENYEKEGMRRSVEGVLLVHEHGHPHVLLLQIGNTFFKLPGGRLRPG 80 (188)
T ss_dssp -EEEE-BGGGEEEEEES----SSSSHHHHHHHHHHHHHHHSSEEEEEEEEEEEETTEEEEEEEEETTTEEE-SEEE--TT
T ss_pred CeEEEecccceeeccCCcccccccCHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCcEEEEEeccCccccCCccEeCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCCCCCCCCCCCCCCcceeeEEEEEEcCCceEEeecCCCeE
Q 028063 99 ESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKL 178 (214)
Q Consensus 99 E~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpkn~kL 178 (214)
|+|++||||+|++.|+.++ +...+|+||||||+|||||||+.||||+||||||||||+|||+|||||+|.|+|||||||
T Consensus 81 E~e~~gLkrkL~~~l~~~~-~~~~~w~vge~l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VPkn~kL 159 (188)
T PF13869_consen 81 EDEIEGLKRKLTEKLSPED-GVDPDWEVGECLGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVPKNMKL 159 (188)
T ss_dssp --HHHHHHHHHHHHHB-SS-SS----EEEEEEEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEETTSEE
T ss_pred CChhHHHHHHHHHHcCCCc-CCCCCcEecCEEEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecCCCCeE
Confidence 9999999999999999864 668899999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhcCcccccceeecccceeeee
Q 028063 179 LAVPLCQIHENHKTYGQIISGVPQLLSKF 207 (214)
Q Consensus 179 ~AvPLfely~N~~~yG~~is~iP~llSRf 207 (214)
+||||||||||+++|||+||||||+||||
T Consensus 160 ~AvPLFeLydN~~~YG~~issiP~lLSRf 188 (188)
T PF13869_consen 160 VAVPLFELYDNAQRYGPIISSIPQLLSRF 188 (188)
T ss_dssp EEEEHHHHTTTHHHHHHHHTTHHHHHTTS
T ss_pred EeecHhhhhcChhhcCchhhccchHhhcC
Confidence 99999999999999999999999999998
No 3
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.19 E-value=1.3e-10 Score=89.56 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=52.7
Q ss_pred CeeEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 60 LRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 60 mRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|++++-+|++....+..+|||+|+..+.|.||||.+++||+..+++.||+.||+|.
T Consensus 1 ~~~~~g~vi~~~~~~~~~vLl~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl 56 (130)
T cd03428 1 EERSAGAIIYRRLNNEIEYLLLQASYGHWDFPKGHVEPGEDDLEAALRETEEETGI 56 (130)
T ss_pred CceEEEEEEEEecCCCceEEEEEccCCcCcCCcCCCCCCCCHHHHHHHHHHHHHCC
Confidence 57899999999888888999999987999999999999999999999999999998
No 4
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.12 E-value=9.7e-10 Score=84.07 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=73.7
Q ss_pred eeEEEEEEEEecCCCCeEEEEeecC-CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~~-~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe 139 (214)
|.+|-||++....+..+|||+|+.. +.|.||||.+++||+..+++.||+.||+|. +..+...++..-.+.
T Consensus 1 ~~~a~~ii~~~~~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl-------~~~~~~~~~~~~~~~-- 71 (131)
T cd03673 1 VLAAGGVVFRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGI-------RAEVGDPLGTIRYWF-- 71 (131)
T ss_pred CeeEEEEEEEccCCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCC-------ceEecceEEEEEEec--
Confidence 5678888887666668999999865 499999999999999999999999999998 455555666532111
Q ss_pred CCCCCCCCCCCCCcceeeEEEEEEcCCceEEee-cC--CCeEEeccchhhhc
Q 028063 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFV-PK--NLKLLAVPLCQIHE 188 (214)
Q Consensus 140 ~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~v-pk--n~kL~AvPLfely~ 188 (214)
|.-+ ..--+...+|.+...... +.+ +. .....-+|+=|+.+
T Consensus 72 ----~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~ 115 (131)
T cd03673 72 ----SSSG---KRVHKTVHWWLMRALGGE-FTPQPDEEVDEVRWLPPDEARD 115 (131)
T ss_pred ----cCCC---CCcceEEEEEEEEEcCCC-cccCCCCcEEEEEEcCHHHHHH
Confidence 1101 112245566777665332 221 22 23556677666653
No 5
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.10 E-value=1.2e-09 Score=87.08 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=68.0
Q ss_pred eeEEEEEEEEecCCCCeEEEEeec--CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVR--NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDF 138 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~--~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnF 138 (214)
|-+|.+|++.++. +|||+|+. .+.|.||||.+++||+..+|++|||.||+|... ....+. ++ .| +...
T Consensus 7 ~~~v~~vi~~~~~---~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~---~~-~~-~~~~ 76 (148)
T PRK09438 7 PVSVLVVIYTPDL---GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDV--LAEQLT---LI-DC-QRSI 76 (148)
T ss_pred ceEEEEEEEeCCC---eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc--ccccee---ec-cc-cccc
Confidence 5667777663332 69999875 378999999999999999999999999999831 001111 11 12 1111
Q ss_pred CC-----CCCCCCCCCCCCcceeeEEEEEEcCCceEEeecCCCeEEeccchhhh
Q 028063 139 ET-----LLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKLLAVPLCQIH 187 (214)
Q Consensus 139 e~-----~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpkn~kL~AvPLfely 187 (214)
.. ..++|-|.+ -.+...+|++++.............+.-+|+=|+-
T Consensus 77 ~~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~ 127 (148)
T PRK09438 77 EYEIFPHWRHRYAPGV---TRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAA 127 (148)
T ss_pred ccccchhhhhcccccc---CCceeEEEEEecCCCCccccCcccceeeCCHHHHH
Confidence 11 122333332 12456888888765433333344455555555543
No 6
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.09 E-value=1.2e-09 Score=84.31 Aligned_cols=106 Identities=22% Similarity=0.356 Sum_probs=73.4
Q ss_pred eEEEEEEEEecCCCCeEEEEeecC-CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFET 140 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~~-~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~ 140 (214)
++|.||++ .++ +|||.|+.+ +.|.||||.+++||+..+++.||+.||+|. +..+...++.+.. +
T Consensus 2 ~~v~~vi~--~~~--~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl-------~~~~~~~~~~~~~--~-- 66 (126)
T cd04688 2 VRAAAIII--HNG--KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGL-------KIEITRLLGVVEN--I-- 66 (126)
T ss_pred eEEEEEEE--ECC--EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCC-------ceecceeeEEEEE--e--
Confidence 46788887 222 999999875 789999999999999999999999999998 5677777877652 1
Q ss_pred CCCCCCCCCCCCcceeeEEEEEEcCCceEEe-----e-cC--CCeEEeccchhhh
Q 028063 141 LLFPYFPPNVKRPKECTKLFLVKLPVSQKFF-----V-PK--NLKLLAVPLCQIH 187 (214)
Q Consensus 141 ~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~-----v-pk--n~kL~AvPLfely 187 (214)
|++-.. .--++..+|++.++...... . +. .....-+|+=+|-
T Consensus 67 --~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 116 (126)
T cd04688 67 --FTYNGK---PGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELK 116 (126)
T ss_pred --eccCCc---ccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcc
Confidence 112111 12345679999987665321 1 11 2455666665554
No 7
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.09 E-value=9.9e-10 Score=83.72 Aligned_cols=107 Identities=23% Similarity=0.267 Sum_probs=71.1
Q ss_pred EEEEEEEEecCCCCeEEEEeecC----CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDF 138 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~~----~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnF 138 (214)
+|.||++ ++ .+|||+|+.+ +.|.||||++++||+..++++||+.||+|. +..+...++.+.....
T Consensus 2 ~~~~ii~-~~---~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl-------~~~~~~~~~~~~~~~~ 70 (128)
T cd04684 2 GAYAVIP-RD---GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGL-------TVEIGRRLGSASRYFY 70 (128)
T ss_pred eeEEEEE-eC---CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCc-------EeecceeeeEEEEEEE
Confidence 4667665 22 6999999975 899999999999999999999999999998 4555666666432111
Q ss_pred CCCCCCCCCCCCCCcceeeEEEEEEcCCceEE-eec--CCCeEEeccchhhh
Q 028063 139 ETLLFPYFPPNVKRPKECTKLFLVKLPVSQKF-FVP--KNLKLLAVPLCQIH 187 (214)
Q Consensus 139 e~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f-~vp--kn~kL~AvPLfely 187 (214)
. |...+.-..+.-+|.+++.....- ..+ ......-+|+=||-
T Consensus 71 ~-------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 115 (128)
T cd04684 71 S-------PDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAI 115 (128)
T ss_pred C-------CCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhh
Confidence 0 100011234567788887665420 112 23566777777765
No 8
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.08 E-value=2.3e-09 Score=82.67 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=50.6
Q ss_pred eeEEEEEEEEecCCCCeEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeee
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~W 133 (214)
|.+|.+||+-. ...|||+++. .+.|.||||++++||+..+|++||+.||+|. +..+.++++..
T Consensus 2 ~~~~~~~i~~~---~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl-------~~~~~~~~~~~ 68 (125)
T cd04679 2 RVGCGAAILRD---DGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGL-------SIHSTRLLCVV 68 (125)
T ss_pred ceEEEEEEECC---CCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCC-------CcccceEEEEE
Confidence 67888888732 2489999975 3799999999999999999999999999998 34445566553
No 9
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.07 E-value=7e-10 Score=91.97 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=52.1
Q ss_pred cCCeeEEEEEEEEecCCCCeEEEEeecC----CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeee
Q 028063 58 HGLRTCVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (214)
Q Consensus 58 ~GmRrsV~aVllvh~h~~phVLLLQ~~~----~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~ 132 (214)
+-...+|.+||. ++..+|||+|+.+ +.|.||||++++||+.++|++||+.||+|.. -+..++.+++.
T Consensus 14 ~~~~~~v~~vI~---~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~-----v~~~~~~~~~~ 84 (159)
T PRK15434 14 STPLISLDFIVE---NSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLR-----LPITAGQFYGV 84 (159)
T ss_pred CCceEEEEEEEE---CCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCc-----cccccceEEEE
Confidence 344567777775 2345999999864 7999999999999999999999999999982 12245566665
No 10
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.05 E-value=1.9e-09 Score=83.17 Aligned_cols=105 Identities=20% Similarity=0.315 Sum_probs=69.2
Q ss_pred EEEEEEEEecCCCCeEEEEeecC-------CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeec
Q 028063 63 CVEAVLLVELFKHPHLLLLQVRN-------SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWK 135 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~~-------~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwR 135 (214)
.|.++++.++ .+|||+++.. +.|.||||++++||+..+|+.||+.||+|.. .+....... +
T Consensus 2 ~v~~~~~~~~---g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~-------~~~~~~~~~--~ 69 (122)
T cd04682 2 GVALALLIGD---GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLT-------LPESRIPWF--R 69 (122)
T ss_pred ceEEEEEEcC---CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCc-------cccccccee--E
Confidence 4666666543 4999999863 5899999999999999999999999999982 222222111 0
Q ss_pred CCCCCCCCCCCCCCCCCcceeeEEEEEEcCCce-EEeecC-CCeEEeccchhhhcCc
Q 028063 136 PDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQ-KFFVPK-NLKLLAVPLCQIHENH 190 (214)
Q Consensus 136 pnFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~-~f~vpk-n~kL~AvPLfely~N~ 190 (214)
.|++- ...++.-+|.+.+.... ....+. -....-+|+=||.++.
T Consensus 70 ------~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 70 ------VYPSA-----SPPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred ------ecccC-----CCCceEEEEEEEEecCCCccccCchhheeecccHHHHhhcc
Confidence 11111 23467789999887665 222222 2246667777776653
No 11
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.02 E-value=1.5e-09 Score=83.96 Aligned_cols=63 Identities=32% Similarity=0.476 Sum_probs=50.3
Q ss_pred eeEEEEEEEEecCCCCeEEEEeecC---CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeee
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~~---~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~W 133 (214)
+.+|.|+++.++ .+|||+|+.+ +.|.+|||++++||+..+++.||+.||+|. ..++...++..
T Consensus 2 ~~~~~~~v~~~~---~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl-------~~~~~~~~~~~ 67 (127)
T cd04670 2 TVGVGGLVLNEK---NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI-------DTEFVSVVGFR 67 (127)
T ss_pred eeEEEEEEEcCC---CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCC-------CcceeEEEEEE
Confidence 346677776332 4899999865 899999999999999999999999999998 45555666543
No 12
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.02 E-value=6.5e-10 Score=84.53 Aligned_cols=48 Identities=29% Similarity=0.560 Sum_probs=41.7
Q ss_pred EEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 66 AVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 66 aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|.+|+..+ -+|||+|+.++.|.+|||.+++||+..+|+.|++.||+|.
T Consensus 3 a~~i~~~~--~~vLlv~r~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl 50 (112)
T cd04667 3 ATVICRRG--GRVLLVRKSGSRWALPGGKIEPGETPLQAARRELQEETGL 50 (112)
T ss_pred eEEEEecC--CEEEEEEcCCCcEeCCCCcCCCCCCHHHHHHHHHHHHhCC
Confidence 44444333 3999999988999999999999999999999999999998
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.02 E-value=1.2e-09 Score=86.33 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=42.3
Q ss_pred eEEEEEEEEecCCCCeEEEEeecC------CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~~------~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|+|.+.++.++ .+|||+|+.. |.|.||||++++||+..+|+.|||.||+|.
T Consensus 4 r~~~~~ii~~~---~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl 60 (141)
T PRK15472 4 RTIVCPLIQND---GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGE 60 (141)
T ss_pred eeEEEEEEecC---CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 44455454433 4899999853 789999999999999999999999999998
No 14
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.00 E-value=2.7e-09 Score=81.12 Aligned_cols=104 Identities=27% Similarity=0.440 Sum_probs=71.0
Q ss_pred eeEEEEEEEEecCCCCeEEEEeecC------CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeee--
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM-- 132 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~~------~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~-- 132 (214)
|++|.++++ +..+ +|||+|+.+ +.|.||||++++||+..+|++||+.||+|. +......++.
T Consensus 2 ~~~v~~ii~-~~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~-------~~~~~~~~~~~~ 71 (134)
T PF00293_consen 2 RRAVGVIIF-NEDG--KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGL-------DVSPLELLGLFS 71 (134)
T ss_dssp EEEEEEEEE-ETTT--EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSE-------EEEEEEEEEEEE
T ss_pred CCEEEEEEE-eCCc--EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccc-------eecccccceeee
Confidence 455555555 4444 999999975 479999999999999999999999999997 4444444444
Q ss_pred eecCCCCCCCCCCCCCCCCCcceeeEEEEEEcCCceEEeecCC---CeEEeccchhh
Q 028063 133 WWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKN---LKLLAVPLCQI 186 (214)
Q Consensus 133 WwRpnFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpkn---~kL~AvPLfel 186 (214)
|..+.-.+ ..+....|.+.++......++.. ..+.=+|+=|+
T Consensus 72 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 116 (134)
T PF00293_consen 72 YPSPSGDP------------EGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDEL 116 (134)
T ss_dssp EEETTTES------------SEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHH
T ss_pred ecccCCCc------------ccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHh
Confidence 33333222 45667888888888875555542 44444444444
No 15
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.00 E-value=1.2e-09 Score=84.69 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=42.6
Q ss_pred eEEEEeecC---CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeee
Q 028063 77 HLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (214)
Q Consensus 77 hVLLLQ~~~---~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~ 132 (214)
+|||+|+.. +.|.||||++++||+.++|++||+.||+|. +.++++.++.
T Consensus 13 ~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl-------~~~~~~~~~~ 64 (121)
T cd04669 13 EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGL-------DVRVEEIFLI 64 (121)
T ss_pred EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCe-------eEeeeeEEEE
Confidence 899999853 589999999999999999999999999998 5566666654
No 16
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.98 E-value=1.7e-09 Score=85.19 Aligned_cols=49 Identities=35% Similarity=0.603 Sum_probs=43.1
Q ss_pred EEEEEEEEecCCCCeEEEEeecC-CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~~-~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
+|.|||+ ++ -+|||+|..+ +.|.||||++++||+..++++||+.||+|.
T Consensus 2 ~~~~ii~-~~---~~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl 51 (131)
T cd04686 2 AVRAIIL-QG---DKILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGA 51 (131)
T ss_pred cEEEEEE-EC---CEEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCC
Confidence 5667775 33 3899999876 899999999999999999999999999998
No 17
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=98.98 E-value=2.1e-09 Score=85.96 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=53.3
Q ss_pred hhcccCC----eeEEEEEEEEecCCCCeEEEEeecC----CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceE
Q 028063 54 NYDAHGL----RTCVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWE 125 (214)
Q Consensus 54 ~y~~~Gm----RrsV~aVllvh~h~~phVLLLQ~~~----~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~e 125 (214)
+|+..|+ .++|.+|++ +. ...|||+|+.. +.|.||||.+++||+.++|++||+.||+|. +.+
T Consensus 2 ~~~~~~~~~~~~~av~~vv~-~~--~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl-------~~~ 71 (142)
T cd04700 2 QYDERHHVEVEARAAGAVIL-NE--RNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGL-------RVR 71 (142)
T ss_pred CcccccCcceeeeeEEEEEE-eC--CCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCc-------eee
Confidence 4555555 456666665 22 23799999753 679999999999999999999999999998 455
Q ss_pred Eceeeeee
Q 028063 126 VGECLGMW 133 (214)
Q Consensus 126 Vge~Lg~W 133 (214)
+...+++|
T Consensus 72 ~~~~~~~~ 79 (142)
T cd04700 72 PVKFLGTY 79 (142)
T ss_pred ccEEEEEE
Confidence 56677764
No 18
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=98.98 E-value=2.2e-09 Score=86.32 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=45.0
Q ss_pred CeeEEEEEEEEecCCCCeEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 60 LRTCVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 60 mRrsV~aVllvh~h~~phVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
.+.+|.+||+- ...+|||.|+. .+.|.||||++++||+..+|++||+.||+|.
T Consensus 11 p~v~v~~vI~~---~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl 67 (144)
T cd03430 11 PLVSIDLIVEN---EDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGL 67 (144)
T ss_pred CeEEEEEEEEe---CCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCC
Confidence 35677777762 23499999985 4789999999999999999999999999998
No 19
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.96 E-value=3.2e-09 Score=82.11 Aligned_cols=63 Identities=27% Similarity=0.277 Sum_probs=49.8
Q ss_pred eeEEEEEEEEecCCCCeEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeee
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~W 133 (214)
|.+|.++|+ +..-+|||.|+. .+.|.+|||++++||+..++++|++.||+|. +......++.+
T Consensus 2 ~~~v~~ii~---~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl-------~~~~~~~~~~~ 68 (129)
T cd04678 2 RVGVGVFVL---NPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL-------HIENVQFLTVT 68 (129)
T ss_pred ceEEEEEEE---CCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCC-------cccceEEEEEE
Confidence 567777776 222489999986 5799999999999999999999999999998 33344455554
No 20
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.95 E-value=1e-08 Score=79.07 Aligned_cols=112 Identities=25% Similarity=0.308 Sum_probs=68.8
Q ss_pred eeEEEEEEEEecCCCCeEEEEeecC-CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~~-~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe 139 (214)
+.+|.++++-++ -+|||.|+.. +.|.||||.+++||+..+|+.||+.||+|. +......++.+..+.+
T Consensus 7 ~~~~~~~v~~~~---~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi-------~~~~~~~~~~~~~~~~- 75 (132)
T cd04677 7 LVGAGVILLNEQ---GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGL-------EVEELELLGVYSGKEF- 75 (132)
T ss_pred ccceEEEEEeCC---CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCC-------eeeeeEEEEEecCCce-
Confidence 445555554222 3899988864 589999999999999999999999999998 4555566665433322
Q ss_pred CCCCCCCCCCCCCcceeeEEEEEEcCCceEEeecC--CCeEEeccchhhhc
Q 028063 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPK--NLKLLAVPLCQIHE 188 (214)
Q Consensus 140 ~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpk--n~kL~AvPLfely~ 188 (214)
|+. |. -.......-+|.+..........+. ...+.-+|+-|+-+
T Consensus 76 ---~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 121 (132)
T cd04677 76 ---YVK-PN-GDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPE 121 (132)
T ss_pred ---eec-CC-CCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCcc
Confidence 211 11 1233345556666655443332232 23455556555543
No 21
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.94 E-value=3e-09 Score=82.47 Aligned_cols=51 Identities=25% Similarity=0.490 Sum_probs=43.9
Q ss_pred eeEEEEEEEEecCCCCeEEEEeec---CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~---~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|.+|.||++ ++ -+|||+|+. .+.|.||||++++||+..+|++||+.||+|.
T Consensus 1 r~~a~~iv~-~~---~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl 54 (128)
T cd04687 1 RNSAKAVII-KN---DKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGI 54 (128)
T ss_pred CcEEEEEEE-EC---CEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCC
Confidence 567888887 32 299999984 3579999999999999999999999999998
No 22
>PLN02325 nudix hydrolase
Probab=98.94 E-value=3.5e-09 Score=85.44 Aligned_cols=64 Identities=34% Similarity=0.299 Sum_probs=51.9
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEeecC----CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeee
Q 028063 59 GLRTCVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (214)
Q Consensus 59 GmRrsV~aVllvh~h~~phVLLLQ~~~----~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~W 133 (214)
..|.+|.+||+ ++ .+|||.|+.+ +.|.||||.+++||+..++++||+.||+|. +.++.+.++..
T Consensus 7 ~p~~~v~~vi~--~~--~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl-------~v~~~~~l~~~ 74 (144)
T PLN02325 7 IPRVAVVVFLL--KG--NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGL-------EIEKIELLTVT 74 (144)
T ss_pred CCeEEEEEEEE--cC--CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCC-------CCcceEEEEEe
Confidence 34666666664 22 3999999874 799999999999999999999999999998 56677777764
No 23
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=98.94 E-value=8e-09 Score=79.62 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=59.8
Q ss_pred eEEEEEEEEecCCCCeEEEEeecC-CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFET 140 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~~-~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~ 140 (214)
.+|.||++ ++ .+|||+++.. +.|.||||.+++||+..++++||+.||+|. +..+...++.--
T Consensus 2 ~~~~~vi~-~~---~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl-------~~~~~~~l~~~~------ 64 (125)
T cd04689 2 LRARAIVR-AG---NKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGV-------AVSDGRFLGAIE------ 64 (125)
T ss_pred eEEEEEEE-eC---CEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCc-------eeeccEEEEEEe------
Confidence 46778876 22 3899998754 789999999999999999999999999998 334444554311
Q ss_pred CCCCCCCCCCCCcceeeEEEEEEcCCc
Q 028063 141 LLFPYFPPNVKRPKECTKLFLVKLPVS 167 (214)
Q Consensus 141 ~~yPYlP~Hit~pKE~~kl~~V~Lpe~ 167 (214)
+.| +.|-...-++..+|++.++..
T Consensus 65 --~~~-~~~~~~~~~~~~~f~~~~~~~ 88 (125)
T cd04689 65 --NQW-HEKGVRTHEINHIFAVESSWL 88 (125)
T ss_pred --eee-ccCCceEEEEEEEEEEEcccc
Confidence 111 112223345667888888654
No 24
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.93 E-value=1.4e-08 Score=76.93 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=65.1
Q ss_pred EEEEEEEecCCCCeEEEEeecC-CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceE-EceeeeeeecCCCCCC
Q 028063 64 VEAVLLVELFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWE-VGECLGMWWKPDFETL 141 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~~-~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~e-Vge~Lg~WwRpnFe~~ 141 (214)
|.++++ .. ..+|||+|+.. +.|.||||++++||+..+|++||+.||+|. ... +...++.+.....
T Consensus 3 ~~~~i~-~~--~~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~-------~~~~~~~~~~~~~~~~~--- 69 (120)
T cd04680 3 ARAVVT-DA--DGRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGI-------RLAVVAELLGVYYHSAS--- 69 (120)
T ss_pred eEEEEE-CC--CCeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCC-------ccccccceEEEEecCCC---
Confidence 445554 22 33899999874 489999999999999999999999999998 333 5566776654321
Q ss_pred CCCCCCCCCCCcceeeEEEEEEcCCceEEeecCC--CeEEeccchhhhc
Q 028063 142 LFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKN--LKLLAVPLCQIHE 188 (214)
Q Consensus 142 ~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpkn--~kL~AvPLfely~ 188 (214)
.......+|.+..-.... ..+.+ ....-+|+=+|-+
T Consensus 70 ----------~~~~~~~~f~~~~~~~~~-~~~~~E~~~~~w~~~~~l~~ 107 (120)
T cd04680 70 ----------GSWDHVIVFRARADTQPV-IRPSHEISEARFFPPDALPE 107 (120)
T ss_pred ----------CCceEEEEEEecccCCCc-cCCcccEEEEEEECHHHCcc
Confidence 112345677777654432 11211 3444555555543
No 25
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.93 E-value=6.2e-09 Score=78.83 Aligned_cols=53 Identities=30% Similarity=0.474 Sum_probs=45.2
Q ss_pred CeeEEEEEEEEecCCCCeEEEEeec-CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 60 LRTCVEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 60 mRrsV~aVllvh~h~~phVLLLQ~~-~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
+|.+|.+|++ ++..+|||.|+. ++.|.||||++++||+.++|++|++.||+|.
T Consensus 1 ~~~~v~~ii~---~~~~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl 54 (129)
T cd04676 1 ILPGVTAVVR---DDEGRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGL 54 (129)
T ss_pred CcceEEEEEE---CCCCeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCc
Confidence 3567777776 223489999985 4789999999999999999999999999998
No 26
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=98.92 E-value=4.8e-09 Score=85.34 Aligned_cols=55 Identities=29% Similarity=0.443 Sum_probs=48.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEeecC------CceecCCcccCCC-CChHHHHHHHHHhhhCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPG-ESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~~------~~fkLPGGrl~~g-E~e~egLkReL~EeLg~ 115 (214)
|+++..|++....+..+|||.|+.. +.|.||||++++| |+..++++||+.||+|.
T Consensus 1 ~~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl 62 (157)
T cd03426 1 RRAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGL 62 (157)
T ss_pred CceEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCC
Confidence 4567777777666678999999863 6899999999999 99999999999999998
No 27
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.92 E-value=4.7e-09 Score=81.59 Aligned_cols=61 Identities=30% Similarity=0.478 Sum_probs=46.4
Q ss_pred eEEEEEEEEecCCCCeEEEEeecC-----CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeee
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVRN-----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~~-----~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~ 132 (214)
..+.++|+.++ -+|||.|+.+ +.|.||||++++||+..+|++|++.||+|. +..+.++++.
T Consensus 4 ~~~~~~ii~~~---~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl-------~~~~~~~~~~ 69 (135)
T PRK10546 4 IDVVAAIIERD---GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGI-------EATVGEYVAS 69 (135)
T ss_pred EEEEEEEEecC---CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCC-------ccccceeEEE
Confidence 34444554332 3899999853 689999999999999999999999999998 3444555544
No 28
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.91 E-value=8.3e-09 Score=79.65 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=53.6
Q ss_pred eeEEEEEEEEecCCCCeEEEEeec-CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKP 136 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~-~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRp 136 (214)
+.+|.|+|+- + .+|||+|.. .+.|.||||++++||+..+|++|++.||+|. +..+..+++...+.
T Consensus 2 ~~~v~~~i~~-~---~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~-------~~~~~~~~~~~~~~ 67 (123)
T cd04672 2 KVDVRAAIFK-D---GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGL-------DVKVRKLAAVDDRN 67 (123)
T ss_pred cceEEEEEEE-C---CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCC-------eeeEeEEEEEeccc
Confidence 4577888762 2 489999986 6899999999999999999999999999998 45677777776553
No 29
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.90 E-value=5.6e-09 Score=81.63 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=42.7
Q ss_pred CeEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeee
Q 028063 76 PHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (214)
Q Consensus 76 phVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~ 132 (214)
.+|||+|+. .+.|.||||.+++||+.+++++|++.||+|. +..+...++.
T Consensus 24 ~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl-------~~~~~~~~~~ 77 (130)
T cd04511 24 GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGA-------RVEIDGLYAV 77 (130)
T ss_pred CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCC-------EEEeeeEEEE
Confidence 489999973 4789999999999999999999999999998 4556666654
No 30
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.89 E-value=4.7e-09 Score=82.20 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=47.8
Q ss_pred EEEEEEEEecCCCCeEEEEeec---CCceecCCcccCCCCChHHHHHHHHHhhhCCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~---~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~ 116 (214)
+|-||++.-..+..+|||+|+. .+.|.+|||++++||+..+|+.||+.||+|..
T Consensus 1 ~~~~v~~~~~~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 57 (131)
T cd04695 1 AVSGVLLRSLDKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGIS 57 (131)
T ss_pred CceEEEEEEcCCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCC
Confidence 3678888766677899999987 48899999999999999999999999999983
No 31
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=98.85 E-value=2.4e-08 Score=79.91 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=71.4
Q ss_pred eeEEEEEEEEecCCCCeEEEEeecC--CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVRN--SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDF 138 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~~--~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnF 138 (214)
|.+|.+||+. . ..+|||+|+.. +.|.||||.+++||+..+++.||+.||+|. +....+.++++- ..
T Consensus 3 ~~~v~~ii~~-~--~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl-------~~~~~~~l~~~~-~~- 70 (147)
T cd03671 3 RPNVGVVLFN-E--DGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGL-------DPDSVEIIAEIP-DW- 70 (147)
T ss_pred CceEEEEEEe-C--CCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCC-------CcCceEEEEEcC-Ce-
Confidence 4556666653 2 35999999865 599999999999999999999999999998 333345666520 00
Q ss_pred CCCCCCCCCC----CCCC---cceeeEEEEEEcCC-ceEEeec-----CCCeEEeccchhhhcCc
Q 028063 139 ETLLFPYFPP----NVKR---PKECTKLFLVKLPV-SQKFFVP-----KNLKLLAVPLCQIHENH 190 (214)
Q Consensus 139 e~~~yPYlP~----Hit~---pKE~~kl~~V~Lpe-~~~f~vp-----kn~kL~AvPLfely~N~ 190 (214)
..|.+ |. |.-. ..+...+|++.+.. ...+.+. ....+.-+|+=|+.+..
T Consensus 71 --~~y~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~ 132 (147)
T cd03671 71 --LRYDL-PPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI 132 (147)
T ss_pred --eEeeC-hhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence 11222 21 1111 12345677777765 2334433 23455667776766543
No 32
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=98.85 E-value=7.9e-09 Score=83.70 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=43.0
Q ss_pred EEEEEEEecCCCCeEEEEeec-CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 64 VEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~-~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|.|+++++++ ..+|||+|.. .+.|.||||++++||+..+|++|||.||+|.
T Consensus 3 ~~gaii~~~~-~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl 54 (145)
T cd03672 3 VYGAIILNED-LDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGF 54 (145)
T ss_pred eeEEEEEeCC-CCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCc
Confidence 5666666543 2489999974 4699999999999999999999999999998
No 33
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.85 E-value=1e-08 Score=79.15 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=41.7
Q ss_pred EEEEEEEEecCCCCeEEEEeec--CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVR--NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~--~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
+|.++++ +.. -+|||+|+. .+.|.||||++++||+..+++.||+.||+|.
T Consensus 4 ~v~~~i~-~~~--~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl 55 (125)
T cd04696 4 TVGALIY-APD--GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGL 55 (125)
T ss_pred EEEEEEE-CCC--CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCC
Confidence 4555554 322 389999975 4799999999999999999999999999998
No 34
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.85 E-value=1.7e-08 Score=76.60 Aligned_cols=63 Identities=35% Similarity=0.647 Sum_probs=47.5
Q ss_pred EEEEEEEecCCCCeEEEEeec-CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEE--ceeeeeeecC
Q 028063 64 VEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEV--GECLGMWWKP 136 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~-~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eV--ge~Lg~WwRp 136 (214)
|.++++.++ .+|||+|+. .+.|.||||++++||+..+|+.|++.||+|.. ... -.+++.+..+
T Consensus 3 ~~~~v~~~~---~~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~-------~~~~~~~~~~~~~~~ 68 (118)
T cd04690 3 AAALILVRD---GRVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLD-------LDPDSLEYLGTFRAP 68 (118)
T ss_pred EEEEEEecC---CeEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCc-------cChhheEEEEEEecc
Confidence 444555433 289998876 47899999999999999999999999999982 222 4466666543
No 35
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.83 E-value=1.7e-08 Score=77.86 Aligned_cols=49 Identities=29% Similarity=0.447 Sum_probs=41.4
Q ss_pred EEEEEEEEecCCCCeEEEEeec------CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVR------NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~------~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
.|.|||+ ++ .+|||+|+. .+.|.||||++++||+..+++.||+.||+|.
T Consensus 2 ~v~~vi~-~~---~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl 56 (117)
T cd04691 2 GVVGVLF-SD---DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGV 56 (117)
T ss_pred eEEEEEE-EC---CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCC
Confidence 3556655 22 589999984 3689999999999999999999999999998
No 36
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.83 E-value=1.4e-08 Score=79.73 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=64.2
Q ss_pred EEEEEEEecCCCCeEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCC
Q 028063 64 VEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFE 139 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe 139 (214)
|.++++++. .-+|||+|+. .+.|.||||++++||+.++|++||+.||+|. +..+.+.++.-..
T Consensus 2 ~~~~vv~~~--~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~-------~~~~~~~~~~~~~---- 68 (123)
T cd04671 2 IVAAVILNN--QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGL-------DCEPTTLLSVEEQ---- 68 (123)
T ss_pred EEEEEEEcC--CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCC-------eeecceEEEEEcc----
Confidence 445555443 3489999975 3689999999999999999999999999998 5555666653111
Q ss_pred CCCCCCCCCCCCCcceeeEEEEEEcCCceEEeec---CCC--eEEeccchhh
Q 028063 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVP---KNL--KLLAVPLCQI 186 (214)
Q Consensus 140 ~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vp---kn~--kL~AvPLfel 186 (214)
+.| ...-+|.++..... +.+. .+. ...-+|+=||
T Consensus 69 -------~~~-----~~~~~f~a~~~~g~-~~~~~~~~~e~~~~~W~~~~el 107 (123)
T cd04671 69 -------GGS-----WFRFVFTGNITGGD-LKTEKEADSESLQARWYSNKDL 107 (123)
T ss_pred -------CCe-----EEEEEEEEEEeCCe-EccCCCCCcceEEEEEECHHHC
Confidence 112 34567877765432 3321 222 4566666555
No 37
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.81 E-value=1.6e-08 Score=78.40 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=43.8
Q ss_pred EEEEEEecCCCCeEEEEeecC---CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 65 EAVLLVELFKHPHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 65 ~aVllvh~h~~phVLLLQ~~~---~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
.+|++.|..+..+|||+|+.+ +.|.+|||++++||+..+|+.||+.||+|.
T Consensus 4 ~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl 57 (129)
T cd04664 4 VLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGL 57 (129)
T ss_pred EEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCC
Confidence 345555554467999999964 799999999999999999999999999998
No 38
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.81 E-value=2.1e-08 Score=75.93 Aligned_cols=60 Identities=28% Similarity=0.432 Sum_probs=47.1
Q ss_pred EEEEEEEEecCCCCeEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeee
Q 028063 63 CVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~W 133 (214)
+|.++|+ ++ ..|||+|+. .+.|.||||++++||+.++|++||+.||+|. +....+.++..
T Consensus 2 ~v~~ii~-~~---~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl-------~~~~~~~~~~~ 65 (122)
T cd04673 2 AVGAVVF-RG---GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGL-------EAEVGRLLTVV 65 (122)
T ss_pred cEEEEEE-EC---CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCc-------EeeeceeEEEE
Confidence 3555554 32 489999986 3789999999999999999999999999998 44455566653
No 39
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.81 E-value=1.9e-08 Score=76.63 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=40.5
Q ss_pred EEEEEEEecCCCCeEEEEeecC-----CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 64 VEAVLLVELFKHPHLLLLQVRN-----SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~~-----~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|.+||+ ++ -+|||.|+.+ +.|.||||++++||+..+|++||+.||+|.
T Consensus 3 v~~vi~-~~---~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl 55 (120)
T cd04683 3 VYVLLR-RD---DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGV 55 (120)
T ss_pred EEEEEE-EC---CEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCC
Confidence 555554 33 2899999753 689999999999999999999999999998
No 40
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.80 E-value=2.5e-08 Score=81.24 Aligned_cols=68 Identities=28% Similarity=0.361 Sum_probs=55.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEeecC----CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKP 136 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~~----~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRp 136 (214)
+.+|.+++ +... +|||+++.+ |.|-||||.++.||+.++++.||+.||.|. +..+.+.++..=.|
T Consensus 10 ~~~v~~~i-~~~~---~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL-------~~~~~~~~~v~~~~ 78 (145)
T COG1051 10 LVAVGALI-VRNG---RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGL-------RVRVLELLAVFDDP 78 (145)
T ss_pred ceeeeEEE-EeCC---EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCC-------cccceeEEEEecCC
Confidence 34444444 4443 999999985 689999999999999999999999999998 57777888887666
Q ss_pred CCC
Q 028063 137 DFE 139 (214)
Q Consensus 137 nFe 139 (214)
+++
T Consensus 79 ~rd 81 (145)
T COG1051 79 GRD 81 (145)
T ss_pred CCC
Confidence 666
No 41
>PLN02709 nudix hydrolase
Probab=98.80 E-value=1.1e-07 Score=83.47 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=71.2
Q ss_pred cCCeeEEEEEEEEec----CCCCeEEEEeecC------CceecCCcccCCCC-ChHHHHHHHHHhhhCCCCCCCCcceEE
Q 028063 58 HGLRTCVEAVLLVEL----FKHPHLLLLQVRN------SIFKLPGGRLRPGE-SDIYGLKRKLTRKLSLNEDGGEVDWEV 126 (214)
Q Consensus 58 ~GmRrsV~aVllvh~----h~~phVLLLQ~~~------~~fkLPGGrl~~gE-~e~egLkReL~EeLg~~~~~~~~~~eV 126 (214)
..+|+++..|+|+.. .+.++|||.++.. |.|.||||+++++| +.+++..||+.||+|...+ .++|
T Consensus 29 ~~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~----~v~v 104 (222)
T PLN02709 29 FPAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPS----LVTI 104 (222)
T ss_pred CCCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch----heEE
Confidence 356788888888753 3578999999973 89999999999986 5689999999999998421 3343
Q ss_pred ceeeeeeecCCCCCCCCCCC---CC--C---CCCcceeeEEEEEEcC
Q 028063 127 GECLGMWWKPDFETLLFPYF---PP--N---VKRPKECTKLFLVKLP 165 (214)
Q Consensus 127 ge~Lg~WwRpnFe~~~yPYl---P~--H---it~pKE~~kl~~V~Lp 165 (214)
-..+...+.+ .....+||+ +. . +-.|.|...+|.|-|.
T Consensus 105 lg~L~~~~t~-sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~ 150 (222)
T PLN02709 105 ISVLEPFVNK-KGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLE 150 (222)
T ss_pred eeecCCeECC-CCCEEEEEEEEecCCCCccccCChhhhheeEEecHH
Confidence 3333333321 222345654 21 1 1367899999998664
No 42
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.79 E-value=7.1e-08 Score=82.03 Aligned_cols=55 Identities=25% Similarity=0.351 Sum_probs=42.6
Q ss_pred eeEEEEEEEEecCCCCeEEEEeec------CCceecCCcccCCC-CChHHHHHHHHHhhhCCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVR------NSIFKLPGGRLRPG-ESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~------~~~fkLPGGrl~~g-E~e~egLkReL~EeLg~~ 116 (214)
|.+|..|.++ +.+.++||+.|+. .|.|.||||++++| |+++++.+||+.||.|..
T Consensus 30 ~~aavvl~l~-~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~ 91 (190)
T PRK10707 30 RQAAVLIPIV-RRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIP 91 (190)
T ss_pred CCeEEEEEEE-ECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCC
Confidence 4444444443 4556799999955 36899999999986 578999999999999983
No 43
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.79 E-value=2.9e-08 Score=77.99 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=48.9
Q ss_pred EEEEEEEe-cCCCCeEEEEeecC-CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEc-eeeeee
Q 028063 64 VEAVLLVE-LFKHPHLLLLQVRN-SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVG-ECLGMW 133 (214)
Q Consensus 64 V~aVllvh-~h~~phVLLLQ~~~-~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVg-e~Lg~W 133 (214)
|.|+|+.. +.+..+|||+++.. +.|.||||.+++||+..++++|++.||.|. +..+. ++++.+
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~-------~~~~~~~~l~~~ 67 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGV-------RGKIGKRPLGRF 67 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCC-------cccccceEEEEE
Confidence 34455443 34457999999854 789999999999999999999999999998 33444 667764
No 44
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=2.7e-08 Score=76.11 Aligned_cols=52 Identities=13% Similarity=0.379 Sum_probs=41.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEeec-----CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~-----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
++.+.+|| +++ ..+|||.|+. .+.|.||||++++||+.++++.|++.||+|.
T Consensus 4 ~~~~~~ii-~~~--~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~ 60 (128)
T TIGR00586 4 QQIAVGII-RNE--NGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGI 60 (128)
T ss_pred EEEEEEEE-ECC--CCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCC
Confidence 34444444 323 2379988885 3689999999999999999999999999998
No 45
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=98.77 E-value=2.8e-08 Score=77.37 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=42.7
Q ss_pred CeEEEEeecC----CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeee
Q 028063 76 PHLLLLQVRN----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (214)
Q Consensus 76 phVLLLQ~~~----~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~W 133 (214)
.+|||+|+.. +.|.||||.+++||+..+|++||+.||+|. +....+.++..
T Consensus 12 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl-------~~~~~~~~~~~ 66 (137)
T cd03427 12 DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGL-------TIDNLKLVGII 66 (137)
T ss_pred CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCe-------EeecceEEEEE
Confidence 3899999873 689999999999999999999999999998 34445555553
No 46
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=98.77 E-value=2.4e-08 Score=79.10 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=42.8
Q ss_pred eEEEEEEEEecCCCCeEEEEeec-CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~-~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
.+|.++++ +++ ..+|||+|+. .+.|.||||.+++||+..+|+.|||.||+|.
T Consensus 3 ~~~~~~v~-~~~-~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl 55 (138)
T cd03674 3 FTASAFVV-NPD-RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGI 55 (138)
T ss_pred EEEEEEEE-eCC-CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCC
Confidence 34555554 332 2699999975 5799999999999999999999999999998
No 47
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.76 E-value=1.2e-07 Score=75.83 Aligned_cols=51 Identities=29% Similarity=0.424 Sum_probs=44.1
Q ss_pred eEEEEEEEEecCCCCeEEEEeecC------CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~~------~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|++.++++.++. +|||.++.. +.|.+|||.+++||+..+|++|++.||+|.
T Consensus 1 ~~~~~~i~~~~g---~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~ 57 (133)
T cd04685 1 RAARVVLLDPDD---RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGI 57 (133)
T ss_pred CeEEEEEEcCCC---eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCC
Confidence 577888885544 899988743 579999999999999999999999999998
No 48
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.74 E-value=1.1e-07 Score=79.21 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=67.9
Q ss_pred eEEEEeecCCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCCCCCCCCCCCCCCccee
Q 028063 77 HLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKEC 156 (214)
Q Consensus 77 hVLLLQ~~~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~~~yPYlP~Hit~pKE~ 156 (214)
++||++.....|.||||++++||++.+|++|||.||.|. ..+.-.++|+++-.. . ..-++
T Consensus 36 ~~LL~~~~~~~~elPgG~vE~gEt~~eaA~REl~EETG~-------~~~~~~~lg~~~~~~-----------~--~~~~~ 95 (156)
T TIGR02705 36 QWLLTEHKRRGLEFPGGKVEPGETSKEAAIREVMEETGA-------IVKELHYIGQYEVEG-----------E--STDFV 95 (156)
T ss_pred EEEEEEEcCCcEECCceecCCCCCHHHHHHHHHHHHhCc-------EeeeeEEEEEEEecC-----------C--CcEEE
Confidence 899998877789999999999999999999999999997 334455777754211 1 14577
Q ss_pred eEEEEEEcCCceEEeecCCCeEE-eccchhhhcC
Q 028063 157 TKLFLVKLPVSQKFFVPKNLKLL-AVPLCQIHEN 189 (214)
Q Consensus 157 ~kl~~V~Lpe~~~f~vpkn~kL~-AvPLfely~N 189 (214)
+.+|+.+..+-... +..+... .+++=++-+.
T Consensus 96 ~~vf~A~~~~~~~~--~e~~E~~~~~~~~~~~~~ 127 (156)
T TIGR02705 96 KDVYFAEVSALESK--DDYLETKGPVLLQEIPDI 127 (156)
T ss_pred EEEEEEEEeccccC--CCceeeEeEEEHHHHHHH
Confidence 89998877644322 6667777 5777777554
No 49
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=98.74 E-value=1.3e-07 Score=73.77 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=41.5
Q ss_pred eEEEEEEEEecCCCCeEEEEeec-----CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~-----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
++|.++++. ....|||+|.. .+.|.+|||.+++||+..+|+.||+.||+|.
T Consensus 3 ~~v~v~~~~---~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl 58 (137)
T cd03424 3 DAVAVLPYD---DDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGY 58 (137)
T ss_pred CEEEEEEEc---CCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCC
Confidence 455555552 23699999753 3589999999999999999999999999998
No 50
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.74 E-value=3.7e-08 Score=76.08 Aligned_cols=49 Identities=31% Similarity=0.474 Sum_probs=40.7
Q ss_pred EEEEEEecCCCCeEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 65 EAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 65 ~aVllvh~h~~phVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
.+|+++... .+|||+|+. .+.|.||||++++||+..+++.||+.||+|.
T Consensus 4 v~~~i~~~~--~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl 56 (130)
T cd04681 4 VGVLILNED--GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGL 56 (130)
T ss_pred EEEEEEcCC--CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCC
Confidence 344444332 389999985 3699999999999999999999999999998
No 51
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=98.74 E-value=4.4e-08 Score=76.17 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=36.3
Q ss_pred eEEEEeecC---CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 77 HLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 77 hVLLLQ~~~---~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
+|||+|+.. +.|.||||.+++||+..++++|||.||+|.
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl 53 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGW 53 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCc
Confidence 899999753 589999999999999999999999999998
No 52
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.72 E-value=3.8e-08 Score=74.86 Aligned_cols=52 Identities=15% Similarity=0.407 Sum_probs=42.1
Q ss_pred eEEEEEEEEecCCCCeEEEEeecC-----CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVRN-----SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~~-----~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
+.+.++++.+ +..+|||.|+.. |.|.||||.+++||+..+++.|++.|++|.
T Consensus 4 ~~~~~~ii~~--~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl 60 (129)
T PRK10776 4 LQIAVGIIRN--PNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGI 60 (129)
T ss_pred eEEEEEEEEC--CCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCC
Confidence 4444444433 334899999863 789999999999999999999999999997
No 53
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.70 E-value=1.1e-07 Score=75.37 Aligned_cols=89 Identities=25% Similarity=0.379 Sum_probs=58.9
Q ss_pred eEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCCCCCCCCC-----
Q 028063 77 HLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFP----- 147 (214)
Q Consensus 77 hVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~~~yPYlP----- 147 (214)
.+||+++. .+.|.||||++++||+..+++.|++.||+|..-. ...+ ..++....++....+|-|++
T Consensus 16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~----~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (118)
T cd04674 16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD----PADI-RLFDVRSAPDGTLLVFGLLPERRAA 90 (118)
T ss_pred CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc----ccEE-EEEEEEecCCCeEEEEEEEeccccc
Confidence 47777764 3799999999999999999999999999998311 0111 23333444444444555553
Q ss_pred --CCCCCcceeeEEEEEEcCCceEE
Q 028063 148 --PNVKRPKECTKLFLVKLPVSQKF 170 (214)
Q Consensus 148 --~Hit~pKE~~kl~~V~Lpe~~~f 170 (214)
+..+-.-|....+.|..++...|
T Consensus 91 ~~~~~~~~~E~~~~~~~~~~~~~~~ 115 (118)
T cd04674 91 DLPPFEPTDETTERAVVTAPSELAF 115 (118)
T ss_pred cCCCCCCCcceeeEEEccCCccccc
Confidence 23344556777777777666544
No 54
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.69 E-value=9.1e-08 Score=75.61 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=45.2
Q ss_pred eEEEEeecCCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecC
Q 028063 77 HLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKP 136 (214)
Q Consensus 77 hVLLLQ~~~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRp 136 (214)
+|||+++..+.|.||||++++||+..++++|++.||.|. .....+.++.++-+
T Consensus 12 ~vLl~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~-------~~~~~~~l~~~~~~ 64 (118)
T cd04665 12 GLLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGA-------ELGSLTLVGYYQVD 64 (118)
T ss_pred EEEEEEeCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-------ccCceEEEEEEEec
Confidence 999999988899999999999999999999999999998 33445567765543
No 55
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.66 E-value=8.9e-08 Score=77.15 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=43.8
Q ss_pred EEEEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 64 VEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|.+|| ..+.+...||+.|.+.+.|.||||.+++||+..++++|+|.||+|.
T Consensus 3 ~~~~~-~~~~~~~~ll~~r~~~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl 53 (126)
T cd04663 3 CPAVL-RRNGEVLELLVFEHPLAGFQIVKGTVEPGETPEAAALRELQEESGL 53 (126)
T ss_pred EEEEE-EeCCceEEEEEEEcCCCcEECCCccCCCCCCHHHHHHHHHHHHHCC
Confidence 34444 4555567999999888789999999999999999999999999998
No 56
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.65 E-value=1.1e-07 Score=72.38 Aligned_cols=40 Identities=30% Similarity=0.542 Sum_probs=36.8
Q ss_pred CeEEEEeecC------CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 76 PHLLLLQVRN------SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 76 phVLLLQ~~~------~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
.+|||+|+.. +.|.+|||++++||+..+++.|++.||+|.
T Consensus 13 ~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl 58 (129)
T cd04699 13 GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGL 58 (129)
T ss_pred CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCc
Confidence 5899999863 579999999999999999999999999998
No 57
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=98.64 E-value=2.2e-07 Score=76.03 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=67.3
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEeecCC------ceecC-CcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceee-
Q 028063 59 GLRTCVEAVLLVELFKHPHLLLLQVRNS------IFKLP-GGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECL- 130 (214)
Q Consensus 59 GmRrsV~aVllvh~h~~phVLLLQ~~~~------~fkLP-GGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~L- 130 (214)
..++.+.+|++... ..+|||.|+..+ .|.+| ||.+++||+.+++++||+.||+|.. ......+
T Consensus 27 ~~~~~~v~v~i~~~--~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~-------~~~~~~~~ 97 (165)
T cd02885 27 TLLHRAFSVFLFNS--KGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGIT-------GDLLELVL 97 (165)
T ss_pred CcceeEEEEEEEcC--CCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCC-------ccchhhcc
Confidence 33366666666544 358999998764 45553 6999999999999999999999983 3333333
Q ss_pred ee-eecCCCCCCCCCCCCCCCCCcceeeEEEEEEcCCceEEeecC-CCeEEeccchhhhcCc
Q 028063 131 GM-WWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPK-NLKLLAVPLCQIHENH 190 (214)
Q Consensus 131 g~-WwRpnFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpk-n~kL~AvPLfely~N~ 190 (214)
+. .|+..++ .. ...++..-+|.+.+...... -+. -..+.-+|+-|+.+..
T Consensus 98 ~~~~~~~~~~--------~~-~~~~~i~~~f~~~~~~~~~~-~~~Ev~~~~w~~~~el~~~~ 149 (165)
T cd02885 98 PRFRYRAPDD--------GG-LVEHEIDHVFFARADVTLIP-NPDEVSEYRWVSLEDLKELV 149 (165)
T ss_pred ceEEEEEEcC--------CC-ceeeEEEEEEEEEeCCCCCC-CccceeEEEEECHHHHHHHH
Confidence 22 2221111 11 11234556777776443221 111 2356677777776644
No 58
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.64 E-value=7.3e-08 Score=76.22 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCeEEEEeecC---CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 75 HPHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 75 ~phVLLLQ~~~---~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
...|||+|+.. +.|.||||++++||+..+|++|++.||+|.
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl 55 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGN 55 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCC
Confidence 45899999853 689999999999999999999999999998
No 59
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.61 E-value=1.7e-07 Score=76.55 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=45.8
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEeecC--CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 59 GLRTCVEAVLLVELFKHPHLLLLQVRN--SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 59 GmRrsV~aVllvh~h~~phVLLLQ~~~--~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
..|.+|.++++..+ .+|||+|+.. +.|.||||.+++||+..+++.|++.||+|.
T Consensus 6 ~~~~~v~~~i~~~~---g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~ 61 (156)
T PRK00714 6 GYRPNVGIILLNRQ---GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGL 61 (156)
T ss_pred CCCCeEEEEEEecC---CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCC
Confidence 46777777776433 3899999843 789999999999999999999999999998
No 60
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.61 E-value=1.8e-07 Score=75.95 Aligned_cols=50 Identities=30% Similarity=0.386 Sum_probs=42.4
Q ss_pred EEEEEEEecCCCCeEEEEeecC------CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 64 VEAVLLVELFKHPHLLLLQVRN------SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~~------~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
+.+||+++. ..+|||.|+.. +.|.||||.+++||+..+++.|++.||+|.
T Consensus 3 ~v~viv~~~--~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi 58 (143)
T cd04694 3 GVAVLLQSS--DQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGL 58 (143)
T ss_pred EEEEEEEcC--CCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCC
Confidence 456666544 45899999863 579999999999999999999999999998
No 61
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.60 E-value=3.4e-07 Score=83.89 Aligned_cols=51 Identities=31% Similarity=0.484 Sum_probs=44.5
Q ss_pred eeEEEEEEEEecCCCCeEEEEeec----CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVR----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
..+|.||++. + -+|||+|+. .+.|.||||.+++||+..+|++||+.||+|.
T Consensus 203 ~vtv~avv~~-~---g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl 257 (340)
T PRK05379 203 FVTVDAVVVQ-S---GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGL 257 (340)
T ss_pred ceEEEEEEEE-C---CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 5788887763 2 299999986 3689999999999999999999999999998
No 62
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=98.59 E-value=2.5e-07 Score=69.20 Aligned_cols=50 Identities=28% Similarity=0.604 Sum_probs=40.9
Q ss_pred EEEEEEEecCCCCeEEEEeec-----CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 64 VEAVLLVELFKHPHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~-----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|..++++++ .-+|||.|+. .+.|.||||.++++|+..+++.|++.|++|.
T Consensus 3 ~~~~~i~~~--~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~ 57 (124)
T cd03425 3 VVAAIIIDD--DGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGI 57 (124)
T ss_pred EEEEEEECC--CCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCc
Confidence 344455443 2489999885 3689999999999999999999999999997
No 63
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.56 E-value=1.5e-07 Score=72.80 Aligned_cols=49 Identities=24% Similarity=0.498 Sum_probs=40.0
Q ss_pred EEEEEEEEecCCCCeEEEEeecC------CceecC-CcccCCCCChHHHHHHHHHhhhCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVRN------SIFKLP-GGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~~------~~fkLP-GGrl~~gE~e~egLkReL~EeLg~ 115 (214)
.|.++++ +. ..+|||.|+.. |.|.+| ||++++||+. +|++||+.||+|.
T Consensus 2 ~v~v~~~-~~--~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl 57 (127)
T cd04693 2 VVHVCIF-NS--KGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGL 57 (127)
T ss_pred eEEEEEE-eC--CCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCC
Confidence 4555554 33 34899988863 689998 9999999999 9999999999998
No 64
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=98.55 E-value=1.8e-07 Score=73.71 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=63.4
Q ss_pred EEEEEEecCCCCeEEEEeec---CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCCC
Q 028063 65 EAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETL 141 (214)
Q Consensus 65 ~aVllvh~h~~phVLLLQ~~---~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~~ 141 (214)
..|++.+. ..+|||+|+. .+.|.||||++++||+..+++.||+.||+|.. ......++.-
T Consensus 3 v~i~l~~~--~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~-------~~~~~~l~~~-------- 65 (131)
T cd03429 3 VIVLVIDG--GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIR-------VKNIRYVGSQ-------- 65 (131)
T ss_pred EEEEEEeC--CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCce-------eeeeEEEeec--------
Confidence 34444333 3699999986 47899999999999999999999999999982 2333344431
Q ss_pred CCCCCCCCCCCcceeeEEEEEEcCCceEEeec--CCCeEEeccchhhhc
Q 028063 142 LFPYFPPNVKRPKECTKLFLVKLPVSQKFFVP--KNLKLLAVPLCQIHE 188 (214)
Q Consensus 142 ~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vp--kn~kL~AvPLfely~ 188 (214)
.|++ + ......|++..... .+..- .-.+..-+|+=||-+
T Consensus 66 ~~~~-~------~~~~~~f~~~~~~~-~~~~~~~E~~~~~w~~~~el~~ 106 (131)
T cd03429 66 PWPF-P------SSLMLGFTAEADSG-EIVVDDDELEDARWFSRDEVRA 106 (131)
T ss_pred CCCC-C------ceEEEEEEEEEcCC-cccCCchhhhccEeecHHHHhh
Confidence 1111 1 23456677776542 22211 224566777777765
No 65
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=98.54 E-value=1.4e-06 Score=64.19 Aligned_cols=50 Identities=30% Similarity=0.541 Sum_probs=42.1
Q ss_pred EEEEEEEEecCCCCeEEEEeecC---CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~~---~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
+|.+++. +. ..+|||.|+.. +.|.+|||.++.||+..+++.|++.||+|.
T Consensus 2 ~~~~i~~-~~--~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl 54 (123)
T cd02883 2 AVGAVIL-DE--DGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGL 54 (123)
T ss_pred ceEEEEE-CC--CCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCc
Confidence 4555554 22 25899999876 899999999999999999999999999998
No 66
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.51 E-value=3.3e-07 Score=72.98 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=44.2
Q ss_pred eEEEEEEEEecCCCCeEEEEeecC------Cceec-CCcccCCCCChHHHHHHHHHhhhCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVRN------SIFKL-PGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~~------~~fkL-PGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
++|...|+-...+..+||+.|+.. |.|.+ |||++++||+..+++.|||.||+|.
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl 63 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGL 63 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCC
Confidence 456666654555567999888864 57888 6999999999999999999999998
No 67
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=98.51 E-value=1.2e-06 Score=73.31 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=56.8
Q ss_pred ceEEEeeCCceeeccccCCCCCChhHHHHHHHHHHhhcccCCeeEEEEEEEEecCCCCeEEEEeecC-C-----ce-ecC
Q 028063 19 YVVDIYPLSSYYFGSKEAIPFKDETLYNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRN-S-----IF-KLP 91 (214)
Q Consensus 19 ~~~~~Ypl~nY~fg~k~~~~ekd~sv~~rl~Rl~~~y~~~GmRrsV~aVllvh~h~~phVLLLQ~~~-~-----~f-kLP 91 (214)
.-|+||--.+-.-|..+ +..-...|+++.+..|++... ...|||.|+.+ + .| .+|
T Consensus 10 e~~~~~d~~~~~~g~~~----------------~~~~~~~~~~h~~~~v~v~~~--~g~iLL~~R~~~~~~~pg~~~~~p 71 (180)
T PRK15393 10 EWVDIVNENNEVIAQAS----------------REQMRAQCLRHRATYIVVHDG--MGKILVQRRTETKDFLPGMLDATA 71 (180)
T ss_pred eEEEEECCCCCEeeEEE----------------HHHHhhCCCceEEEEEEEECC--CCeEEEEEeCCCCCCCCCcccccC
Confidence 44777777766666542 111223477777777776543 45899888753 2 23 689
Q ss_pred CcccCCCCChHHHHHHHHHhhhCCC
Q 028063 92 GGRLRPGESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 92 GGrl~~gE~e~egLkReL~EeLg~~ 116 (214)
||++++||+..+|++|||.||+|..
T Consensus 72 GG~ve~GEs~~eAA~REL~EEtGl~ 96 (180)
T PRK15393 72 GGVVQAGEQLLESARREAEEELGIA 96 (180)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999983
No 68
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.50 E-value=4.3e-07 Score=75.94 Aligned_cols=59 Identities=22% Similarity=0.184 Sum_probs=47.6
Q ss_pred hcccCCeeEEEEEEEEecCCCCeEEEEeecCCceecC-------CcccCCCCChHHHHHHHHHhhhCC
Q 028063 55 YDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLP-------GGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 55 y~~~GmRrsV~aVllvh~h~~phVLLLQ~~~~~fkLP-------GGrl~~gE~e~egLkReL~EeLg~ 115 (214)
....|..+.+.+|++++. .-+|||.|+..+.+.+| ||++++||+..+|++|||.||+|.
T Consensus 27 ~~~~~~~h~av~v~i~~~--~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl 92 (184)
T PRK03759 27 HTADTPLHLAFSCYLFDA--DGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGV 92 (184)
T ss_pred HhcCCCeeeEEEEEEEcC--CCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCC
Confidence 345678777777877654 34899999876555555 599999999999999999999998
No 69
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.48 E-value=4.7e-07 Score=75.74 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=60.8
Q ss_pred CCCeEEEEeec-----CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCCCCCCCCCC
Q 028063 74 KHPHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPP 148 (214)
Q Consensus 74 ~~phVLLLQ~~-----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~~~yPYlP~ 148 (214)
+..+|||++.- ...|.||||.+++||++.++++|||.||.|.. ...-+.++..+. -|.
T Consensus 57 ~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~-------~~~l~~l~~~~~----------~~~ 119 (185)
T PRK11762 57 DDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFG-------ARQLTFLKELSL----------APS 119 (185)
T ss_pred CCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCC-------CcceEEEEEEec----------CCC
Confidence 34589999862 35799999999999999999999999999983 222345555431 111
Q ss_pred CCCCcceeeEEEEEEcCCce-EE-eecCCCeEEeccchhhhcC
Q 028063 149 NVKRPKECTKLFLVKLPVSQ-KF-FVPKNLKLLAVPLCQIHEN 189 (214)
Q Consensus 149 Hit~pKE~~kl~~V~Lpe~~-~f-~vpkn~kL~AvPLfely~N 189 (214)
+. .+...+|+..-.... .. .=.....+..+|+=|+.+.
T Consensus 120 ~~---~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~ 159 (185)
T PRK11762 120 YF---SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDEL 159 (185)
T ss_pred cc---CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHH
Confidence 11 244566665432111 00 0123467777888877653
No 70
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.43 E-value=1e-06 Score=68.69 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=40.8
Q ss_pred EEEEEEEEecCCCCeEEEEeecC------Cceec-CCcccCCCCChHHHHHHHHHhhhCCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVRN------SIFKL-PGGRLRPGESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~~------~~fkL-PGGrl~~gE~e~egLkReL~EeLg~~ 116 (214)
+|.++++ +...+|||.|+.. +.|.+ |||++++||+..++++||+.||+|..
T Consensus 2 ~~~v~i~---~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~ 59 (126)
T cd04697 2 ATYIFVF---NSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGID 59 (126)
T ss_pred eEEEEEE---cCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCC
Confidence 4566665 2234899888753 46888 79999999999999999999999983
No 71
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.35 E-value=1.5e-06 Score=70.20 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=40.4
Q ss_pred EEEEE-ecCCCCeEEEEee--------cCCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 66 AVLLV-ELFKHPHLLLLQV--------RNSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 66 aVllv-h~h~~phVLLLQ~--------~~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|+++. ...+...|||+++ ..+.|.||||+++.||++.++++||+.||+|.
T Consensus 4 g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl 62 (126)
T cd04662 4 GILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGF 62 (126)
T ss_pred EEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCC
Confidence 44444 3334567888873 34789999999999999999999999999998
No 72
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.33 E-value=2.4e-06 Score=63.29 Aligned_cols=51 Identities=33% Similarity=0.472 Sum_probs=41.1
Q ss_pred EEEEEEEecCCCCeEEEEeecCC--ceecCCcccCCCCChHH-HHHHHHHhhhCC
Q 028063 64 VEAVLLVELFKHPHLLLLQVRNS--IFKLPGGRLRPGESDIY-GLKRKLTRKLSL 115 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~~~--~fkLPGGrl~~gE~e~e-gLkReL~EeLg~ 115 (214)
+..++++.... .+||+.++... .|.+|||++++||+..+ +++||+.||+|.
T Consensus 13 ~~~~~~~~~~~-~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl 66 (161)
T COG0494 13 AVAVLVGRDGP-GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL 66 (161)
T ss_pred eEEEEEecCCC-CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCC
Confidence 33333333333 78999998754 89999999999999888 999999999998
No 73
>PRK08999 hypothetical protein; Provisional
Probab=98.30 E-value=1.6e-06 Score=77.20 Aligned_cols=41 Identities=29% Similarity=0.643 Sum_probs=37.0
Q ss_pred CeEEEEeec-----CCceecCCcccCCCCChHHHHHHHHHhhhCCC
Q 028063 76 PHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 76 phVLLLQ~~-----~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~ 116 (214)
.+|||.|+. .|.|.||||++++||+..+++.|++.||+|..
T Consensus 17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~ 62 (312)
T PRK08999 17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIE 62 (312)
T ss_pred CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCc
Confidence 489999885 37999999999999999999999999999973
No 74
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=98.17 E-value=3.2e-06 Score=75.07 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=37.1
Q ss_pred CeEEEEeec---CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 76 PHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 76 phVLLLQ~~---~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
-+|||.|+. .+.|.||||.+++||+.+++++||+.||+|.
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl 185 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGI 185 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCc
Confidence 589999875 4789999999999999999999999999998
No 75
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.07 E-value=1.6e-05 Score=65.96 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=70.6
Q ss_pred hhcccCCeeEEEEEEEEecCCCCeEEEEeecC--CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeee
Q 028063 54 NYDAHGLRTCVEAVLLVELFKHPHLLLLQVRN--SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLG 131 (214)
Q Consensus 54 ~y~~~GmRrsV~aVllvh~h~~phVLLLQ~~~--~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg 131 (214)
.|+..|.|.-+-.|.+--+.+.-.|||++... -.|-+|+|..+++|+..|+..||-.||-|+ .=.++++++
T Consensus 2 ry~~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv-------~G~l~~~~~ 74 (145)
T KOG2839|consen 2 RYDPAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGV-------KGKLGRLLG 74 (145)
T ss_pred ccCCCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCc-------eeeeecccc
Confidence 47778998888888775555457999999875 589999999999999999999999999998 457788888
Q ss_pred eeecCCCCCCCCCCCCCCCCCccee
Q 028063 132 MWWKPDFETLLFPYFPPNVKRPKEC 156 (214)
Q Consensus 132 ~WwRpnFe~~~yPYlP~Hit~pKE~ 156 (214)
.+|.-.+ .-|.++||-.
T Consensus 75 g~~~~~~--------~~~~~~~k~~ 91 (145)
T KOG2839|consen 75 GFEDFLS--------KKHRTKPKGV 91 (145)
T ss_pred chhhccC--------hhhcccccce
Confidence 8886544 4566665543
No 76
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.06 E-value=1e-05 Score=68.45 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=64.3
Q ss_pred EEEEEecCCCCeEEEEee----------cCCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeec
Q 028063 66 AVLLVELFKHPHLLLLQV----------RNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWK 135 (214)
Q Consensus 66 aVllvh~h~~phVLLLQ~----------~~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwR 135 (214)
+||+. .....+|||++. ....|.||||.+++||+++++..|||.||.|... ..|+ +++.+|.
T Consensus 48 ~vl~~-~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~----~~~~---~~~~~~~ 119 (185)
T TIGR00052 48 AVLLY-DPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQV----KNLR---KLLSFYS 119 (185)
T ss_pred EEEEE-ECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHcccccccee----cceE---EEEEEEc
Confidence 44433 333458888885 2347899999999999999999999999999832 1332 4555432
Q ss_pred CCCCCCCCCCCCCCCCCcceeeEEEEEEcCCceEEee-----cCCCeEEeccchhhhc
Q 028063 136 PDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFV-----PKNLKLLAVPLCQIHE 188 (214)
Q Consensus 136 pnFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~v-----pkn~kL~AvPLfely~ 188 (214)
. | ..--|...+|++++.....-.- .-.+..+-+|+=|+.+
T Consensus 120 ~----------~---g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~ 164 (185)
T TIGR00052 120 S----------P---GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQ 164 (185)
T ss_pred C----------C---CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHH
Confidence 1 1 1224677888888654321110 1234666777766653
No 77
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.05 E-value=1.5e-05 Score=65.09 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=44.5
Q ss_pred ccCCeeEEEEEEEEecCCCCeEEEEeecC------CceecC-CcccCCCCChHHHHHHHHHhhhCCC
Q 028063 57 AHGLRTCVEAVLLVELFKHPHLLLLQVRN------SIFKLP-GGRLRPGESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 57 ~~GmRrsV~aVllvh~h~~phVLLLQ~~~------~~fkLP-GGrl~~gE~e~egLkReL~EeLg~~ 116 (214)
+.|+++.+.+|++++.+ .+|||.|+.. |.|.+| ||.+++|| .+++.|||.||+|..
T Consensus 22 ~~g~~h~~v~v~v~~~~--g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~ 84 (158)
T TIGR02150 22 QETPLHRAFSVFLFNEE--GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIP 84 (158)
T ss_pred cCCCeEEEEEEEEEcCC--CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCC
Confidence 45887777778776543 4799999875 566665 69999999 499999999999983
No 78
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.02 E-value=9.4e-06 Score=69.46 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=38.8
Q ss_pred CCCCeEEEEeec-CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 73 FKHPHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 73 h~~phVLLLQ~~-~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
.+...||++|+. ++.|.||||.+++||+..++++|+|.||++.
T Consensus 46 ~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l 89 (186)
T cd03670 46 KPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALN 89 (186)
T ss_pred CCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcc
Confidence 456789999986 5899999999999999999999999999964
No 79
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=97.85 E-value=5.4e-05 Score=62.64 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=71.9
Q ss_pred cccCCeeEEEEEE-EEecCC-CCeEEEEeecC------Cce-ecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEE
Q 028063 56 DAHGLRTCVEAVL-LVELFK-HPHLLLLQVRN------SIF-KLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEV 126 (214)
Q Consensus 56 ~~~GmRrsV~aVl-lvh~h~-~phVLLLQ~~~------~~f-kLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eV 126 (214)
...|+++.+.-|. ++.+.+ ..+|++-|+.. |.| .+|||.+++||++.++++|||.||+|.... .++-
T Consensus 26 ~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~----~~~~ 101 (180)
T cd03676 26 RLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPED----LVRQ 101 (180)
T ss_pred ccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHH----HHhh
Confidence 3568866666653 443332 46888888863 677 699999999999999999999999998321 1110
Q ss_pred ceeeeeeecCCCCCCCCCCCCCCCCCcceeeEEEEEEcCCceEEeecCC--CeEEeccchhhhcCc
Q 028063 127 GECLGMWWKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKN--LKLLAVPLCQIHENH 190 (214)
Q Consensus 127 ge~Lg~WwRpnFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpkn--~kL~AvPLfely~N~ 190 (214)
-.+++... ++|+.-+. ..-+|..-+|.+.++.........+ .....+|+=|+.+..
T Consensus 102 l~~~g~~~------~~~~~~~~--~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 102 LKPVGVVS------YLREGEAG--GLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred ceeccEEE------EEEEcCCC--cEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence 11223211 01111111 1233666778777754432222222 446667777766543
No 80
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=97.80 E-value=0.0001 Score=63.36 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=62.7
Q ss_pred EEEEEEEecCCCCeEEEEeec---C-------CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeee
Q 028063 64 VEAVLLVELFKHPHLLLLQVR---N-------SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMW 133 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~---~-------~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~W 133 (214)
+.+||.+++. ..+|||++-- . -.|++|+|.+++||++.+|.+|||.||.|... .+|+ .++.+
T Consensus 51 ~V~il~~~~~-~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a----~~~~---~l~~~ 122 (202)
T PRK10729 51 AAVLLPFDPV-RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIV----GRTK---PVLSY 122 (202)
T ss_pred eEEEEEEECC-CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCcee----eEEE---EEEEE
Confidence 4445555432 2377777642 1 25899999999999999999999999999831 1232 44443
Q ss_pred ecCCCCCCCCCCCCCCCCCcceeeEEEEEEcCCce---EEeec---CCCeEEeccchhhhc
Q 028063 134 WKPDFETLLFPYFPPNVKRPKECTKLFLVKLPVSQ---KFFVP---KNLKLLAVPLCQIHE 188 (214)
Q Consensus 134 wRpnFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~---~f~vp---kn~kL~AvPLfely~ 188 (214)
|.. |. -.-|...+|+......+ ....+ -.+.++.+|+=|+..
T Consensus 123 ~~s----------pg---~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~ 170 (202)
T PRK10729 123 LAS----------PG---GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ 170 (202)
T ss_pred EcC----------CC---cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHH
Confidence 321 11 23366788887631111 01111 225677788777664
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=97.65 E-value=0.0001 Score=67.19 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=42.2
Q ss_pred EEEEEEEE-ecCCCCeEEEEeecC-----CceecCCcccCCC-CChHHHHHHHHHhhhCCC
Q 028063 63 CVEAVLLV-ELFKHPHLLLLQVRN-----SIFKLPGGRLRPG-ESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 63 sV~aVllv-h~h~~phVLLLQ~~~-----~~fkLPGGrl~~g-E~e~egLkReL~EeLg~~ 116 (214)
...|||++ +..+.++|||++.-. -.++||||.++++ |+.+++.+|||.||.|..
T Consensus 129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~ 189 (291)
T PLN03143 129 PAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIK 189 (291)
T ss_pred CeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCc
Confidence 34455544 555677888877642 4789999999985 899999999999999983
No 82
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.30 E-value=0.00098 Score=49.71 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=34.5
Q ss_pred CeEEEEeec-----CCceecCCcccCCCCChHHHHHHHHHhhhC
Q 028063 76 PHLLLLQVR-----NSIFKLPGGRLRPGESDIYGLKRKLTRKLS 114 (214)
Q Consensus 76 phVLLLQ~~-----~~~fkLPGGrl~~gE~e~egLkReL~EeLg 114 (214)
.++||-|+. .|.|.||||+.+.+|++++.+.|++.++++
T Consensus 14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 489999996 379999999999999999999999988865
No 83
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=96.92 E-value=0.0024 Score=57.07 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=68.4
Q ss_pred eeEEEEEEEEec-CCCCeEEEEeec------CCceecCCcccCCCC-ChHHHHHHHHHhhhCCCCCCCCcceEEceeeee
Q 028063 61 RTCVEAVLLVEL-FKHPHLLLLQVR------NSIFKLPGGRLRPGE-SDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (214)
Q Consensus 61 RrsV~aVllvh~-h~~phVLLLQ~~------~~~fkLPGGrl~~gE-~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~ 132 (214)
|.+..-|.|+.. .+.-.|||.|+. .|.-.||||+.++++ +++.+..||--||.|... ..++|--.+-.
T Consensus 42 ~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~----~~~~~~g~l~~ 117 (246)
T KOG3069|consen 42 RKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP----ELVDVLGALPP 117 (246)
T ss_pred CCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH----HHhhhhhhccc
Confidence 677777777766 455688888876 388999999999998 678899999999999842 11221112222
Q ss_pred eecCCCCCCCCCC---------CCCCCCCcceeeEEEEEEc
Q 028063 133 WWKPDFETLLFPY---------FPPNVKRPKECTKLFLVKL 164 (214)
Q Consensus 133 WwRpnFe~~~yPY---------lP~Hit~pKE~~kl~~V~L 164 (214)
+..+ +.....|+ +|-++-.+-|+..+|-|=|
T Consensus 118 ~~~r-~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL 157 (246)
T KOG3069|consen 118 FVLR-SGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPL 157 (246)
T ss_pred eeec-cCcccceeEEEEecccccccccCCchheeeeeeeeH
Confidence 3332 22223332 2888899999999999865
No 84
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=96.88 E-value=0.0041 Score=53.05 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=62.4
Q ss_pred EEEEEEEecCCCCeEEEEeec-C----------CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeee
Q 028063 64 VEAVLLVELFKHPHLLLLQVR-N----------SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (214)
Q Consensus 64 V~aVllvh~h~~phVLLLQ~~-~----------~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~ 132 (214)
+.+||+... +.-+|||++-- - -.|+||+|.+++| ++.+|.+|||.||.|... .+|+ .|+.
T Consensus 47 ~v~Vl~~~~-~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a----~~~~---~l~~ 117 (191)
T PRK15009 47 GATILLYNA-KKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEV----GEVR---KLFE 117 (191)
T ss_pred EEEEEEEEC-CCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCcc----ceEE---EeeE
Confidence 344444432 23377777641 1 2489999999976 699999999999999832 2454 3444
Q ss_pred eecCCCCCCCCCCCCCCCCCcceeeEEEEEEcC--CceE--Eeec-CCCeEEeccchhhhc
Q 028063 133 WWKPDFETLLFPYFPPNVKRPKECTKLFLVKLP--VSQK--FFVP-KNLKLLAVPLCQIHE 188 (214)
Q Consensus 133 WwRpnFe~~~yPYlP~Hit~pKE~~kl~~V~Lp--e~~~--f~vp-kn~kL~AvPLfely~ 188 (214)
+|.. |. ---|...+|+++.- .+.. -..+ -.+.++.+|+=|+.+
T Consensus 118 ~~~s----------pG---~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~ 165 (191)
T PRK15009 118 LYMS----------PG---GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALE 165 (191)
T ss_pred EEcC----------Cc---ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHH
Confidence 3211 11 23477888888742 1111 0112 356788888888764
No 85
>PLN02791 Nudix hydrolase homolog
Probab=96.73 E-value=0.0054 Score=62.57 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=49.0
Q ss_pred hhcccCCeeEEEEEEEEecCCCCeEEEEeec------CCceec-CCcccCCCCChHHHHHHHHHhhhCCC
Q 028063 54 NYDAHGLRTCVEAVLLVELFKHPHLLLLQVR------NSIFKL-PGGRLRPGESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 54 ~y~~~GmRrsV~aVllvh~h~~phVLLLQ~~------~~~fkL-PGGrl~~gE~e~egLkReL~EeLg~~ 116 (214)
+..+.|+.+.+.-|.|.+. ....|||-||. .|.|.. +||.+.+||+..++..|||.||||+.
T Consensus 24 evH~~Gl~HrAvhVwIfn~-~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~ 92 (770)
T PLN02791 24 EVHRDGDYHRAVHVWIYSE-STQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGII 92 (770)
T ss_pred hhccCCCceEEEEEEEEEC-CCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3456799777777777654 23577777765 278888 89999999999999999999999983
No 86
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=96.59 E-value=0.0032 Score=57.76 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=41.5
Q ss_pred eEEEEEEEEecCCCCeEEEEeec------CCceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVR------NSIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~------~~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
..|-|.++ +++ -+||++|.. .+-|++|+|++.+||+...|+.||..|+.|.
T Consensus 116 vgvg~~V~--n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgi 172 (295)
T KOG0648|consen 116 VGVGAFVL--NKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGI 172 (295)
T ss_pred eeeeeeEe--cCC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCc
Confidence 34444444 333 699999964 3789999999999999999999999999996
No 87
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=96.33 E-value=0.0076 Score=56.01 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=48.5
Q ss_pred EEEEEEecCCCCeEEEEeec---CCceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeee
Q 028063 65 EAVLLVELFKHPHLLLLQVR---NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGM 132 (214)
Q Consensus 65 ~aVllvh~h~~phVLLLQ~~---~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~ 132 (214)
..|+++-+|+..|.||-+.. .|-|-.+-|-++|||+-+||..||.-||.|. ++++-.+.++
T Consensus 189 vVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi-------~V~~I~~~as 252 (345)
T KOG3084|consen 189 VVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGI-------EVEVISYVAS 252 (345)
T ss_pred eEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCc-------eeeeEeeeec
Confidence 34444457888899888764 4899999999999999999999999999998 4554445544
No 88
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.013 Score=53.46 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=42.9
Q ss_pred eeEEEEEEEEecCCCCeEEEEeecC---CceecCCcccCCCCChHHHHHHHHHhhhCC
Q 028063 61 RTCVEAVLLVELFKHPHLLLLQVRN---SIFKLPGGRLRPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 61 RrsV~aVllvh~h~~phVLLLQ~~~---~~fkLPGGrl~~gE~e~egLkReL~EeLg~ 115 (214)
|+.=..|+++++.+. +||+++.. |.|-+--|-+++|||=+++..||..||.|+
T Consensus 142 R~dP~vIv~v~~~~~--ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi 197 (279)
T COG2816 142 RIDPCVIVAVIRGDE--ILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGI 197 (279)
T ss_pred CCCCeEEEEEecCCc--eeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCe
Confidence 444455666655444 99999874 788888899999999999999999999997
No 89
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=95.80 E-value=0.029 Score=49.34 Aligned_cols=108 Identities=16% Similarity=0.269 Sum_probs=68.5
Q ss_pred EEEEEEEEecCCCCeEEEEeec---CCc--eecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCC
Q 028063 63 CVEAVLLVELFKHPHLLLLQVR---NSI--FKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPD 137 (214)
Q Consensus 63 sV~aVllvh~h~~phVLLLQ~~---~~~--fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpn 137 (214)
.|.-+.++...++|||+|.+-- .|. .+||-|-++.|||.+.+..|||.||.|.... +. ..-...|
T Consensus 75 gVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk-----v~-~~s~~~f---- 144 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK-----VD-MVSPTVF---- 144 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccce-----ee-eccccEE----
Confidence 4445556678899999998742 243 5899999999999999999999999998421 11 0111112
Q ss_pred CCCCCCCCCCCCCCCcceeeEEEEEE--cCCceE-Eeec---CCCeEEeccchhhhc
Q 028063 138 FETLLFPYFPPNVKRPKECTKLFLVK--LPVSQK-FFVP---KNLKLLAVPLCQIHE 188 (214)
Q Consensus 138 Fe~~~yPYlP~Hit~pKE~~kl~~V~--Lpe~~~-f~vp---kn~kL~AvPLfely~ 188 (214)
+=|-.|..-+|+-++.|. .||+.. ...+ .-.+...||+-+|.+
T Consensus 145 --------~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~ 193 (225)
T KOG3041|consen 145 --------LDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWR 193 (225)
T ss_pred --------cCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHH
Confidence 233448888898888874 343321 0011 113556666666654
No 90
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.011 Score=52.90 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=33.5
Q ss_pred CeEEEEeec-CCceecCCcccCCCCChHHHHHHHHHhhh
Q 028063 76 PHLLLLQVR-NSIFKLPGGRLRPGESDIYGLKRKLTRKL 113 (214)
Q Consensus 76 phVLLLQ~~-~~~fkLPGGrl~~gE~e~egLkReL~EeL 113 (214)
-.++.+|+. ++.|.+|||-.+|||.--..|||++.||-
T Consensus 139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 466778885 79999999999999999999999998874
No 91
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=95.67 E-value=0.037 Score=49.39 Aligned_cols=58 Identities=24% Similarity=0.213 Sum_probs=39.0
Q ss_pred ccCCeeEEEEEEEEecCCCCeEEEEeecCCceecCC-------cccCCCCC-----------------hHHHHHHHHHhh
Q 028063 57 AHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPG-------GRLRPGES-----------------DIYGLKRKLTRK 112 (214)
Q Consensus 57 ~~GmRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPG-------Grl~~gE~-----------------e~egLkReL~Ee 112 (214)
..|+.+-+..|+|.+.. ..|||-||....-..|| |-...||+ -.++..|||.||
T Consensus 51 ~~gl~Hra~~v~i~n~~--g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EE 128 (247)
T PLN02552 51 PRGLLHRAFSVFLFNSK--YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHE 128 (247)
T ss_pred CCCceEEEEEEEEEcCC--CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHH
Confidence 46887777777776554 47888887653333343 44444422 367999999999
Q ss_pred hCCC
Q 028063 113 LSLN 116 (214)
Q Consensus 113 Lg~~ 116 (214)
||+.
T Consensus 129 lGI~ 132 (247)
T PLN02552 129 LGIP 132 (247)
T ss_pred hCCC
Confidence 9984
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=91.99 E-value=0.35 Score=40.20 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=39.8
Q ss_pred EEEEEEe-cCCCCeEEEEeec--------CCceecCCcccCCCCChHHHHHHHHHhhhCCC
Q 028063 65 EAVLLVE-LFKHPHLLLLQVR--------NSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN 116 (214)
Q Consensus 65 ~aVllvh-~h~~phVLLLQ~~--------~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~ 116 (214)
.||||.. +.+.-.|||+.-+ .|.|.+|-|....||++..+.+|+..||+|+.
T Consensus 6 AGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~ 66 (161)
T COG4119 6 AGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGIC 66 (161)
T ss_pred ceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhcee
Confidence 3455542 3444556665544 37899999999999999999999999999973
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=88.72 E-value=0.69 Score=35.09 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=38.6
Q ss_pred CeEEEEeecC-----CceecCCcccCCCCChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCCCCCCCCCCCC
Q 028063 76 PHLLLLQVRN-----SIFKLPGGRLRPGESDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPPNV 150 (214)
Q Consensus 76 phVLLLQ~~~-----~~fkLPGGrl~~gE~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~~~yPYlP~Hi 150 (214)
-++||-||.+ |.|.||.-..+ +++..+.+.+.+.+.++. ...+.+.+++.- --|
T Consensus 9 ~~~Ll~kRp~~gll~GLwefP~~e~~-~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~v~-H~f------------ 67 (114)
T PF14815_consen 9 GRVLLEKRPEKGLLAGLWEFPLIESD-EEDDEEELEEWLEEQLGL-------SIRSVEPLGTVK-HVF------------ 67 (114)
T ss_dssp SEEEEEE--SSSTTTT-EE--EEE-S-SS-CHHHHHHHTCCSSS--------EEEE-S-SEEEE-EE-------------
T ss_pred CEEEEEECCCCChhhcCcccCEeCcc-CCCCHHHHHHHHHHHcCC-------ChhhheecCcEE-EEc------------
Confidence 3799999974 79999999988 555577777777777775 444455555421 011
Q ss_pred CCcceeeEEEEEEcCCceEE
Q 028063 151 KRPKECTKLFLVKLPVSQKF 170 (214)
Q Consensus 151 t~pKE~~kl~~V~Lpe~~~f 170 (214)
|+=+=...+|.+++......
T Consensus 68 SH~~~~~~~~~~~~~~~~~~ 87 (114)
T PF14815_consen 68 SHRRWTIHVYEVEVSADPPA 87 (114)
T ss_dssp SSEEEEEEEEEEEEE-SS--
T ss_pred cceEEEEEEEEEEecCCCCC
Confidence 23344567777777665443
No 94
>PLN02839 nudix hydrolase
Probab=87.93 E-value=3 Score=39.66 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=34.9
Q ss_pred EEEecCCCCeEEEEeecC------Cce-ecCCcccCCCCChHHHHHHHHHhhhCCCC
Q 028063 68 LLVELFKHPHLLLLQVRN------SIF-KLPGGRLRPGESDIYGLKRKLTRKLSLNE 117 (214)
Q Consensus 68 llvh~h~~phVLLLQ~~~------~~f-kLPGGrl~~gE~e~egLkReL~EeLg~~~ 117 (214)
-+|+..+..++-+-|+.. |.| -+-||.+..||++.|++.||..||.|..+
T Consensus 210 Gyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~ 266 (372)
T PLN02839 210 GYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISK 266 (372)
T ss_pred EEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCH
Confidence 333333444555555443 222 45679999999999999999999999853
No 95
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=60.80 E-value=4.6 Score=31.63 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=28.2
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHHHHHHHHHh
Q 028063 59 GLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRKLTR 111 (214)
Q Consensus 59 GmRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLkReL~E 111 (214)
.++..+.+|+++|.| |.|-++|.+.|++.- ++|.+
T Consensus 55 aL~~~A~~vil~HNH-----------------PsG~~~PS~~D~~~T-~~l~~ 89 (113)
T cd08071 55 ALRHNAAAIILAHNH-----------------PSGDPTPSREDIELT-KRLKE 89 (113)
T ss_pred HHHHhhheEEEEeeC-----------------CCCCCCCCHHHHHHH-HHHHH
Confidence 466778999999887 889999999998877 44444
No 96
>PRK00024 hypothetical protein; Reviewed
Probab=56.05 E-value=8 Score=33.89 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=29.6
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHHHHHH--HHHhhhCC
Q 028063 59 GLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKR--KLTRKLSL 115 (214)
Q Consensus 59 GmRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLkR--eL~EeLg~ 115 (214)
.++..+.+||++|+| |.|-.+|.+.|++-=+| +..+.+|.
T Consensus 161 Al~~~A~~iIl~HNH-----------------PSG~~~PS~~D~~~T~~l~~a~~~l~I 202 (224)
T PRK00024 161 ALKLNAAALILAHNH-----------------PSGDPEPSQADILITKRLKEAGELLGI 202 (224)
T ss_pred HHHhhccceEEEecC-----------------CCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 456778999999887 88999999999874443 33345554
No 97
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=52.66 E-value=20 Score=31.18 Aligned_cols=45 Identities=29% Similarity=0.368 Sum_probs=33.3
Q ss_pred CCCCeEEEEeecCCceecCC-------cccCCCCChHHHHHHHHHhhhCCCC
Q 028063 73 FKHPHLLLLQVRNSIFKLPG-------GRLRPGESDIYGLKRKLTRKLSLNE 117 (214)
Q Consensus 73 h~~phVLLLQ~~~~~fkLPG-------Grl~~gE~e~egLkReL~EeLg~~~ 117 (214)
+.+-.+|+.|++.+.--.|| |.=-+||+-+++..|+|..|||++.
T Consensus 42 ne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~ 93 (185)
T COG1443 42 NERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEP 93 (185)
T ss_pred CCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCC
Confidence 44568888888854444443 2233999999999999999999864
No 98
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.43 E-value=13 Score=32.66 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=29.8
Q ss_pred CCeeEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHHHHHH--HHHhhhCC
Q 028063 59 GLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKR--KLTRKLSL 115 (214)
Q Consensus 59 GmRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLkR--eL~EeLg~ 115 (214)
.++..+.+||++|+| |.|-.+|.+.|++.=+| +..+.+|.
T Consensus 155 Al~~~A~~vIlaHNH-----------------PSG~~~PS~~Di~~T~~l~~a~~~lgI 196 (218)
T TIGR00608 155 ALKLSASALILAHNH-----------------PSGEPSPSQEDILITERLRKAAELLGI 196 (218)
T ss_pred HHHhhCCeEEEEeec-----------------CCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 456678899999887 88999999999876543 33355554
No 99
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=41.30 E-value=11 Score=35.48 Aligned_cols=121 Identities=19% Similarity=0.262 Sum_probs=76.6
Q ss_pred hhcccCCeeEEEEEEEEecCCCCeEEEEee-cCCceecCCcccCCCCChHHHHHHHHHhhhCCC-----CCCCCcceEEc
Q 028063 54 NYDAHGLRTCVEAVLLVELFKHPHLLLLQV-RNSIFKLPGGRLRPGESDIYGLKRKLTRKLSLN-----EDGGEVDWEVG 127 (214)
Q Consensus 54 ~y~~~GmRrsV~aVllvh~h~~phVLLLQ~-~~~~fkLPGGrl~~gE~e~egLkReL~EeLg~~-----~~~~~~~~eVg 127 (214)
.|...-.|.-|-|.++-.+ ..-++||++= ....|-+|-|++...|++..|..|+..|+.|.. .+...-+..|.
T Consensus 74 ~f~~yk~~iPv~ga~ild~-~~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~Ie~nI~ 152 (348)
T KOG2937|consen 74 DFAPYKARIPVRGAIILDE-KRSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGIETNIR 152 (348)
T ss_pred hhccccCCCCCchHhhhhh-hhhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCcccchh
Confidence 3444556677776666543 4556666653 345699999999999999999999999999973 11111122222
Q ss_pred eeeee-eecC--CCCCCCCCCCCCCCCCcceeeEEEEEEcCCceEEeecCCCeE
Q 028063 128 ECLGM-WWKP--DFETLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVPKNLKL 178 (214)
Q Consensus 128 e~Lg~-WwRp--nFe~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vpkn~kL 178 (214)
+-+-. +-++ .-++..+|=+=-||+ +..=.++=+|.+...-.-|++++-
T Consensus 153 dq~~~~fIi~gvs~d~~f~~~v~~eis---~ihW~~l~~l~~t~~~s~~k~~~~ 203 (348)
T KOG2937|consen 153 DQLVRLFIINGVSEDTNFNPRVRKEIS---KIHWHYLDHLVPTDKKSGPKGVKS 203 (348)
T ss_pred hceeeeeeeccceeeeecchhhhcccc---ceeeeehhhhcccccccCCCcccc
Confidence 22222 4442 233455665555553 233445568888888899999887
No 100
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=38.75 E-value=24 Score=26.64 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.0
Q ss_pred ccCCCCChHHHHHHHHHh
Q 028063 94 RLRPGESDIYGLKRKLTR 111 (214)
Q Consensus 94 rl~~gE~e~egLkReL~E 111 (214)
.|+.|++++|||.|++.-
T Consensus 51 ~Ceg~~~eEECL~RRtL~ 68 (81)
T PF06404_consen 51 SCEGGEGEEECLMRRTLA 68 (81)
T ss_pred cccCCCCchHHHHHHHHH
Confidence 678779999999998754
No 101
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.00 E-value=2.4e+02 Score=22.14 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhcccCCeeEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHHHHH--HHHHhhhC
Q 028063 45 YNRVLRMKSNYDAHGLRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLK--RKLTRKLS 114 (214)
Q Consensus 45 ~~rl~Rl~~~y~~~GmRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLk--ReL~EeLg 114 (214)
++|+.|+.+ +.|.-.+++|=.+|-....-..+-+...|+....=++.+..+|+.-+.++ +++.++|+
T Consensus 14 ~dri~~~l~---e~g~~v~~eGD~ivas~pgis~ieik~E~kkL~v~t~~~~~d~~~l~~~ktyndfleklt 82 (96)
T COG4004 14 PDRIMRGLS---ELGWTVSEEGDRIVASSPGISRIEIKPENKKLLVNTTDYTDDETKLQTAKTYNDFLEKLT 82 (96)
T ss_pred HHHHHHHHH---HhCeeEeecccEEEEecCCceEEEEecccceEEEecccccCchhHHHHHHHHHHHHHHHh
Confidence 566666554 44677888888888776666777778788888888899999999988887 46777776
No 102
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=27.06 E-value=53 Score=24.37 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHHHHH
Q 028063 62 TCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLK 106 (214)
Q Consensus 62 rsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLk 106 (214)
.....|+++|.| |+|..+|.+.|++..+
T Consensus 54 ~~~~~v~i~HsH-----------------P~g~~~PS~~D~~~~~ 81 (101)
T cd08059 54 IGMKVVGLVHSH-----------------PSGSCRPSEADLSLFT 81 (101)
T ss_pred CCCcEEEEEecC-----------------cCCCCCCCHHHHHHHH
Confidence 344678888887 7889999998876544
No 103
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=26.70 E-value=1.3e+02 Score=27.70 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=31.8
Q ss_pred eEEEEeec---CCceecCCccc-CCCCChHHHHHHHHHhhhCC
Q 028063 77 HLLLLQVR---NSIFKLPGGRL-RPGESDIYGLKRKLTRKLSL 115 (214)
Q Consensus 77 hVLLLQ~~---~~~fkLPGGrl-~~gE~e~egLkReL~EeLg~ 115 (214)
=+||++.. .+.|.||.+.. .++++=..+..|.|....|-
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge 182 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGE 182 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcc
Confidence 46777732 57999999999 88998889999999887763
No 104
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=25.96 E-value=36 Score=26.86 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=16.3
Q ss_pred CeeEEEEEEEEecCCCCeEEEEeecCCceecCCcccCCCCChHH
Q 028063 60 LRTCVEAVLLVELFKHPHLLLLQVRNSIFKLPGGRLRPGESDIY 103 (214)
Q Consensus 60 mRrsV~aVllvh~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~e 103 (214)
++..+.+||++|.| |+|..+|.+.|++
T Consensus 61 l~~~A~~vIl~HNH-----------------PsG~~~PS~~D~~ 87 (123)
T PF04002_consen 61 LRLNASSVILAHNH-----------------PSGDPEPSDADIA 87 (123)
T ss_dssp HHTT-SEEEEEEE------------------TTS--S--HHHHH
T ss_pred HhhCCceEEEEEEc-----------------CCCCCCCCHhHHH
Confidence 34556889999987 7899999887764
No 105
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=23.81 E-value=2.5e+02 Score=23.57 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHhhhCCCCCCCCcceEEceeeeeeecCCCCCCCCCCCCCCCCCccee--eEEEEEEcCCceEEeec
Q 028063 100 SDIYGLKRKLTRKLSLNEDGGEVDWEVGECLGMWWKPDFETLLFPYFPPNVKRPKEC--TKLFLVKLPVSQKFFVP 173 (214)
Q Consensus 100 ~e~egLkReL~EeLg~~~~~~~~~~eVge~Lg~WwRpnFe~~~yPYlP~Hit~pKE~--~kl~~V~Lpe~~~f~vp 173 (214)
.....|+..+.+.+|. .++.-..||-||||+. + .+..|+-++..+ .-|.-|.|=..|.|.+=
T Consensus 74 ~~L~~L~~~v~~~~g~------~~~~~n~~LvN~Y~~G-d-----~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~ 137 (169)
T TIGR00568 74 QDLGDLCERVATAAGF------PDFQPDACLVNRYAPG-A-----TLSLHQDRDEPDLRAPLLSVSLGLPAIFLIG 137 (169)
T ss_pred HHHHHHHHHHHHHhCC------CCCCCCEEEEEeecCC-C-----ccccccccccccCCCCEEEEeCCCCEEEEec
Confidence 4456777777777764 2456678999999999 6 489999975444 37888999999999983
No 106
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.36 E-value=1.4e+02 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=23.4
Q ss_pred CceecCCcccCCCCChHHHHHHHHHhhhC
Q 028063 86 SIFKLPGGRLRPGESDIYGLKRKLTRKLS 114 (214)
Q Consensus 86 ~~fkLPGGrl~~gE~e~egLkReL~EeLg 114 (214)
.-|-+|||++-..--..+-+..+++++..
T Consensus 22 ~GWl~Pgg~vi~NPlkAqR~AE~~n~~~~ 50 (60)
T PF07026_consen 22 NGWLMPGGKVITNPLKAQRLAEELNSKQV 50 (60)
T ss_pred ceeecCCCeeEcCHHHHHHHHHHHHhhHh
Confidence 36999999999887777778778877765
No 107
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=22.18 E-value=2e+02 Score=23.22 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=40.1
Q ss_pred HHHHHHhhcccCCeeEEEEEEEEe-----cCCCCeEEEEeecCCceecCCcccCCCCChHHHHHHH--HHhhhCCCCCCC
Q 028063 48 VLRMKSNYDAHGLRTCVEAVLLVE-----LFKHPHLLLLQVRNSIFKLPGGRLRPGESDIYGLKRK--LTRKLSLNEDGG 120 (214)
Q Consensus 48 l~Rl~~~y~~~GmRrsV~aVllvh-----~h~~phVLLLQ~~~~~fkLPGGrl~~gE~e~egLkRe--L~EeLg~~~~~~ 120 (214)
-+-.+++++..- -.-|++|=|+. ..+..-+-..-...+.|+.|||+--|..- ..+=-|| |.--|+
T Consensus 26 S~~Fkd~C~~TT-A~iV~~V~L~k~~sDvN~~t~GiYv~sstG~~w~Ipgg~~YPdN~-ls~EmRKiAMAAvLS------ 97 (122)
T PF06453_consen 26 SKHFKDNCNSTT-AKIVQGVQLVKYISDVNKNTKGIYVVSSTGGVWFIPGGQDYPDNY-LSNEMRKIAMAAVLS------ 97 (122)
T ss_dssp -HHHHHHHTTSS-SEEEEEE-EEEEEEE-STTT-EEEEEETTS-EEEE---SSTTHHH-HHHHHHHHHHHHHHH------
T ss_pred HHHHHhhhhhhH-HHHHhhhhhhhhhhhccCCCCcEEEEeCCCCeEEccCCCcCchhH-hhHHHHHHHHHHHHh------
Confidence 344677777532 34466665552 34455677777778899999999887541 1111222 233333
Q ss_pred CcceEEceeeeeeecCC
Q 028063 121 EVDWEVGECLGMWWKPD 137 (214)
Q Consensus 121 ~~~~eVge~Lg~WwRpn 137 (214)
+..|.=|...=+.||
T Consensus 98 --~~rVNlCAs~a~sPN 112 (122)
T PF06453_consen 98 --NVRVNLCASEASSPN 112 (122)
T ss_dssp --T-EEEEEEETTSSSE
T ss_pred --CCEEEeeecCCCCCC
Confidence 566666666554444
No 108
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=69 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.521 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCcceeeEEEEEEcCCceEEeec
Q 028063 140 TLLFPYFPPNVKRPKECTKLFLVKLPVSQKFFVP 173 (214)
Q Consensus 140 ~~~yPYlP~Hit~pKE~~kl~~V~Lpe~~~f~vp 173 (214)
+.-|||-||-|+ =|.|+|--..-|+|.+++|
T Consensus 58 p~eYPFKPP~i~---f~tkiYHpNVDe~gqvClP 88 (153)
T KOG0422|consen 58 PVEYPFKPPKIK---FKTKIYHPNVDEKGQVCLP 88 (153)
T ss_pred CCCCCCCCCeee---eeeeeccCCCCCCCceeee
Confidence 347999999874 5679999899999999988
Done!