Query 028065
Match_columns 214
No_of_seqs 162 out of 1387
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 6E-44 1.3E-48 300.3 14.9 195 2-200 3-198 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.8 9.6E-22 2.1E-26 142.3 5.4 86 7-95 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.7 6.8E-18 1.5E-22 122.1 6.5 74 128-201 1-74 (87)
4 KOG1623 Multitransmembrane pro 99.5 2.4E-14 5.2E-19 121.1 4.6 89 5-96 125-213 (243)
5 COG4095 Uncharacterized conser 99.3 5E-12 1.1E-16 90.3 7.5 86 1-92 1-86 (89)
6 COG4095 Uncharacterized conser 99.3 3.3E-11 7.2E-16 86.0 8.1 76 126-204 4-79 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.8 8.3E-07 1.8E-11 74.8 18.0 172 10-188 6-198 (220)
8 PF04193 PQ-loop: PQ loop repe 98.2 7.4E-06 1.6E-10 54.9 6.3 57 128-187 3-59 (61)
9 PF04193 PQ-loop: PQ loop repe 98.1 7.2E-06 1.6E-10 55.0 6.0 54 11-66 5-58 (61)
10 KOG2913 Predicted membrane pro 96.8 0.022 4.9E-07 49.2 11.3 55 5-59 6-60 (260)
11 PHA02246 hypothetical protein 96.5 0.32 7E-06 38.8 16.4 178 1-201 1-181 (192)
12 KOG3211 Predicted endoplasmic 96.4 0.12 2.6E-06 43.1 12.4 157 21-190 44-203 (230)
13 TIGR00951 2A43 Lysosomal Cysti 95.7 0.023 5E-07 47.9 5.4 50 127-179 4-53 (220)
14 smart00679 CTNS Repeated motif 95.3 0.017 3.6E-07 33.4 2.4 27 22-48 2-28 (32)
15 smart00679 CTNS Repeated motif 93.6 0.061 1.3E-06 30.9 2.1 28 144-171 2-29 (32)
16 PRK01021 lpxB lipid-A-disaccha 93.4 5.1 0.00011 38.8 15.7 66 129-198 142-207 (608)
17 PF03650 MPC: Uncharacterised 92.6 0.043 9.4E-07 41.8 0.5 60 33-93 39-98 (119)
18 KOG1589 Uncharacterized conser 91.2 0.14 3E-06 38.4 1.8 59 33-92 43-101 (118)
19 PHA02246 hypothetical protein 89.0 3.8 8.2E-05 32.9 8.4 63 15-79 116-178 (192)
20 PF07578 LAB_N: Lipid A Biosyn 88.1 3.7 8.1E-05 28.6 7.0 54 146-204 14-67 (72)
21 PF10688 Imp-YgjV: Bacterial i 85.6 17 0.00037 29.1 10.8 127 45-205 30-157 (163)
22 PF03650 MPC: Uncharacterised 78.7 2.1 4.6E-05 32.7 2.8 71 131-206 20-93 (119)
23 KOG3211 Predicted endoplasmic 77.2 3.2 7E-05 34.8 3.7 71 21-93 155-225 (230)
24 COG3952 Predicted membrane pro 66.1 26 0.00056 26.2 5.9 52 152-207 47-98 (113)
25 KOG2913 Predicted membrane pro 64.7 15 0.00033 31.8 5.2 56 125-183 7-62 (260)
26 KOG1589 Uncharacterized conser 60.2 8.2 0.00018 29.0 2.4 51 155-205 43-96 (118)
27 PF07578 LAB_N: Lipid A Biosyn 52.6 32 0.0007 23.9 4.2 54 21-78 11-64 (72)
28 PF07857 DUF1632: CEO family ( 46.8 49 0.0011 28.6 5.4 66 127-192 180-254 (254)
29 PF10688 Imp-YgjV: Bacterial i 43.4 18 0.00039 29.0 2.1 36 45-83 118-153 (163)
30 PF05602 CLPTM1: Cleft lip and 42.2 55 0.0012 30.3 5.4 70 11-82 305-374 (438)
31 PRK15487 O-antigen ligase RfaL 38.8 1.5E+02 0.0032 27.2 7.5 69 130-203 327-396 (400)
32 KOG3145 Cystine transporter Cy 36.3 1.7E+02 0.0036 26.2 7.0 181 22-213 138-353 (372)
33 PF13829 DUF4191: Domain of un 28.7 1.1E+02 0.0024 26.0 4.6 58 146-205 10-69 (224)
34 KOG4314 Predicted carbohydrate 27.0 1.4E+02 0.0029 25.4 4.7 52 122-173 127-178 (290)
35 PRK11387 S-methylmethionine tr 25.8 3.8E+02 0.0081 24.6 8.1 18 15-32 374-391 (471)
36 KOG2489 Transmembrane protein 24.9 6.3E+02 0.014 24.3 11.0 165 15-181 328-520 (592)
37 PF05545 FixQ: Cbb3-type cytoc 24.2 1.8E+02 0.0039 18.1 4.0 35 3-37 2-36 (49)
38 PRK10580 proY putative proline 22.4 4.9E+02 0.011 23.7 8.2 24 11-34 363-386 (457)
39 PF01102 Glycophorin_A: Glycop 21.6 1.5E+02 0.0032 22.7 3.7 19 3-21 66-84 (122)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=6e-44 Score=300.31 Aligned_cols=195 Identities=46% Similarity=0.792 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHH
Q 028065 2 DIAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEI 81 (214)
Q Consensus 2 ~~~~~v~g~l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~ 81 (214)
+....++|..|+++|+++|++|+|+++||+|+||+|+.|..||+++++||.+|+.||. +.+||..++.+|++|+.++.
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~--~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGL--LKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhh--hccCceEEEEEehhcHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999997 56657889999999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cchhhhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccc
Q 028065 82 IYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHG-NARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEF 160 (214)
Q Consensus 82 ~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~ 160 (214)
+|+..|+.|+++||+.+.... .....+++..++++...|+ +++.+.+|.+|.+++++||+|||..+|+|+|+||+|+
T Consensus 81 ~Yi~~f~~ya~~k~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~ 158 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVKIVLA--LVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEY 158 (243)
T ss_pred HHHHHHheecCchheeEeeeh--HHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceee
Confidence 999999999998873222111 1112333333345556666 4568899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHHHHH
Q 028065 161 MPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDLTVL 200 (214)
Q Consensus 161 ~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~~~~ 200 (214)
||++++++.++++..|++||++++|.|+.+||.+|.++|+
T Consensus 159 mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~ 198 (243)
T KOG1623|consen 159 MPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGL 198 (243)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=9.6e-22 Score=142.32 Aligned_cols=86 Identities=26% Similarity=0.606 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHHHHH
Q 028065 7 LFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLI 86 (214)
Q Consensus 7 v~g~l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~~~~ 86 (214)
++|++|.+.++++++||+|+++|++|+||+|++|+.|+++.++||.+|+.||+ +.+| ++++.+|.+|..++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~--l~~d-~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGI--LIND-WPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhh--hcCC-eeEEeeHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999999996 5554 68999999999999999999
Q ss_pred HHhccChhH
Q 028065 87 FLLFAPKKE 95 (214)
Q Consensus 87 ~~~y~~~k~ 95 (214)
|++|++|||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999999875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.73 E-value=6.8e-18 Score=122.07 Aligned_cols=74 Identities=34% Similarity=0.445 Sum_probs=70.8
Q ss_pred hhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHHHHHH
Q 028065 128 IFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDLTVLE 201 (214)
Q Consensus 128 ~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~~~~~ 201 (214)
+++|.+|...+++++.||++++++++|+|+++++|.++.++.++||.+|+.||++++|++++++|.+|.+++..
T Consensus 1 ~~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~ 74 (87)
T PF03083_consen 1 QVLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSII 74 (87)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999987754
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.48 E-value=2.4e-14 Score=121.09 Aligned_cols=89 Identities=19% Similarity=0.338 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHHH
Q 028065 5 HFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYV 84 (214)
Q Consensus 5 ~~v~g~l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~~ 84 (214)
.+.+|.+|.+.+++||.||+..+++++|+||+|.+|+......++++..|+.||+ +. +|+.+..+|.+|..++..++
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGl--li-~D~~IaipN~iG~~l~~~QL 201 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGL--LI-KDFFIAIPNVLGFLLGLIQL 201 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHH--Hh-cCeEEEcccHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999997 55 55789999999999999999
Q ss_pred HHHHhccChhHH
Q 028065 85 LIFLLFAPKKEK 96 (214)
Q Consensus 85 ~~~~~y~~~k~~ 96 (214)
..|++|++++++
T Consensus 202 ~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 202 ILYFKYPKTTEK 213 (243)
T ss_pred HHhhhcCCCccc
Confidence 999999877643
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=5e-12 Score=90.27 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=76.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHH
Q 028065 1 MDIAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIE 80 (214)
Q Consensus 1 ~~~~~~v~g~l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~ 80 (214)
||...++.|..|.+.+.. +.+||..+++|+||++++|+..+......+.+|+.||+ +.+ +.|+...|.++..++
T Consensus 1 m~~~~~viG~ia~ilttf---~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI--Li~-~lPii~aN~i~~il~ 74 (89)
T COG4095 1 MDFFIEVIGTIAGILTTF---AFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI--LIN-DLPIIIANIISFILS 74 (89)
T ss_pred CcchhhhHHHHHHHHHHH---HHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH--HHc-cCcchhHHHHHHHHH
Confidence 678888999988877776 68999999999999999999999999999999999996 555 478999999999999
Q ss_pred HHHHHHHHhccC
Q 028065 81 IIYVLIFLLFAP 92 (214)
Q Consensus 81 ~~~~~~~~~y~~ 92 (214)
..-+....+|..
T Consensus 75 liIl~~kI~~~~ 86 (89)
T COG4095 75 LIILFYKIKYIL 86 (89)
T ss_pred HHHHHHHHHHHH
Confidence 988887776643
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=3.3e-11 Score=86.05 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=70.7
Q ss_pred hhhhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHHHHHHHHH
Q 028065 126 RKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDLTVLEFWR 204 (214)
Q Consensus 126 ~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~~~~~~~~ 204 (214)
..+..|.+|+.++..+| +||+-+++|+||++++++++........++|++||++++|.++...|.++..+++-+-.
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~ 79 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILF 79 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHH
Confidence 35778999999999999 99999999999999999999999999999999999999999999999999998876543
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.80 E-value=8.3e-07 Score=74.83 Aligned_cols=172 Identities=13% Similarity=0.086 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHh--------cccccccCceeEeee----hhhhH
Q 028065 10 VFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWY--------GLPFVSKNNILVSTI----NGTGS 77 (214)
Q Consensus 10 ~l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~Y--------G~~~l~~~~~~i~~~----N~~G~ 77 (214)
.+|.+...+-..+.+||+++.+|+||++++|+..+..-..+...|..| .. .++ ++.-.+ |-+-.
T Consensus 6 ~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~---~~~-~~~~~~~v~~edl~~ 81 (220)
T TIGR00951 6 ILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSI---TNE-FPLSSPGVTQNDVFF 81 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhh---hhc-cccccCCCcHHHHHH
Confidence 334444444445899999999999999999999999999999999999 42 322 322211 33332
Q ss_pred HHHH-----HHHHHHHhccChhHHHH--HHHHH-HHHHHHHHHHHHHHhhhccccchhhhhhhhhHHHHHHHhHhhHHHH
Q 028065 78 AIEI-----IYVLIFLLFAPKKEKAK--IFGLF-MLVLTVFAAVALVSLLAFHGNARKIFCGFAATIFSIIMYASPLSIM 149 (214)
Q Consensus 78 ~l~~-----~~~~~~~~y~~~k~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPL~~i 149 (214)
.++. .-..-+.+|.++.+|.. ..+.. ......++.............+....++.+-...++.-+ +||+
T Consensus 82 ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~iky---iPQi 158 (220)
T TIGR00951 82 TLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKY---FPQA 158 (220)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH---hHHH
Confidence 2222 22222223333212211 11111 111111111110100111123444556666666665555 9999
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHHHHHhhcc-CCcee
Q 028065 150 RMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLG-RDPFV 188 (214)
Q Consensus 150 ~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~-~D~~i 188 (214)
+...|.||+++.|..-....+..++.-..-.... +|...
T Consensus 159 ~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~ 198 (220)
T TIGR00951 159 ATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLK 198 (220)
T ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999988888888877666655533 44443
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.16 E-value=7.4e-06 Score=54.88 Aligned_cols=57 Identities=21% Similarity=0.420 Sum_probs=48.9
Q ss_pred hhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhccCCce
Q 028065 128 IFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPF 187 (214)
Q Consensus 128 ~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~ 187 (214)
+.+|.++.++....+ +||+.+..|+||++++++.+......++++|+.|.+..++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666666665555 999999999999999999999999999999999999987654
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.15 E-value=7.2e-06 Score=54.96 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCc
Q 028065 11 FGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNN 66 (214)
Q Consensus 11 l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~ 66 (214)
++.+..++...+.+||+++.+|+||++++|...+.....+..+|+.|.+ ..+++
T Consensus 5 ~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~--~~~~~ 58 (61)
T PF04193_consen 5 LGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI--LSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 3444455555699999999999999999999999999999999999996 55443
No 10
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.78 E-value=0.022 Score=49.21 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcc
Q 028065 5 HFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGL 59 (214)
Q Consensus 5 ~~v~g~l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~ 59 (214)
.+....+|++++++--.+-.||+.+..|+||.+++|+.+.+.-++....=+.|..
T Consensus 6 ~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~ 60 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFF 60 (260)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHH
Confidence 3455667777888888899999999999999999999999888877777777774
No 11
>PHA02246 hypothetical protein
Probab=96.49 E-value=0.32 Score=38.85 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=90.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCce-eEeeehhhhHHH
Q 028065 1 MDIAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNI-LVSTINGTGSAI 79 (214)
Q Consensus 1 ~~~~~~v~g~l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~-~i~~~N~~G~~l 79 (214)
||.....+... -++..-....|+++...|.|+.+++|-. |+-......+-..|-+ +..|.- .-+.+-+....+
T Consensus 1 md~~~~~~s~~---yailit~gYipgL~slvk~~nv~GvS~~-FWYLi~~tvgiSfyNl--L~T~~~~fqi~svg~nl~l 74 (192)
T PHA02246 1 MDNLSHYLSIL---YAILITVGYIPGLVALVKAESVKGVSNY-FWYLIVATVGISFYNL--LLTDASVFQIVSVGLNLTL 74 (192)
T ss_pred CchHHHHHHHH---HHHHHHhhhhhhHHHHhhhcccccHHHH-HHHHHHHHHHHHHHHH--HhcCCceEEEeeeehhhhh
Confidence 66655555543 3334444689999999999999998743 4445555667778886 443322 222333344455
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhHHHHHHHhHhhHHHHHHHHhcCCcc
Q 028065 80 EIIYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHGNARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVE 159 (214)
Q Consensus 80 ~~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~ 159 (214)
+.+.+.+-- |+ ||......... .++... +...+ ..+.--.+|...-+..| .+|+-+-.|||++|
T Consensus 75 givcLlv~~-~r---kkd~f~~~fii---ifSLll----fll~~--~~evtQtVat~tIiLaY---i~QIIqfyKTK~SE 138 (192)
T PHA02246 75 GIVCLLVAS-YR---KKDYFSIPFII---VFSLLL----FLLSD--FTALTQTVATITIILAY---VTQITTFYKTKSAE 138 (192)
T ss_pred hhhheeeeh-hh---ccccccchHHH---HHHHHH----HHHhh--hHHHHHHHHHHHHHHHH---HHHHHHHhhhcccC
Confidence 554443321 22 22111111111 111111 11111 11222233344444445 89999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcc--CCceeEehhHHHHHHHHH
Q 028065 160 FMPFFLSLFVFLCGTSWFVFGLLG--RDPFVAVSFIFFDLTVLE 201 (214)
Q Consensus 160 ~~p~~~~~~~~~~~~~W~~YG~~~--~D~~i~~pN~~g~~~~~~ 201 (214)
+.+..+.+.-...-.+ ....... --.++.+...+.+++-+.
T Consensus 139 g~n~~l~lii~~GL~~-L~~~m~Lthv~~hIiiTEf~N~iLiLi 181 (192)
T PHA02246 139 GTNRFLFLIIGLGLAS-LIVSMVLTHTYVHIIATEFVNFVLILI 181 (192)
T ss_pred CCChhHHHHHHHHHHH-HHHHHhhhCCcceeeHHHHHHHHHHHH
Confidence 9987655433222221 1222222 445566665555554443
No 12
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=96.36 E-value=0.12 Score=43.11 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=93.9
Q ss_pred HhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHHHHHHHhccChh--HHHH
Q 028065 21 LAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPKK--EKAK 98 (214)
Q Consensus 21 ~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~~~~~~~y~~~k--~~~~ 98 (214)
.--+||+-+|+.+||++++|...+..-+++-..-+.|.+ .++..+.-.--.+=+.++.+-+..+..+-+.+ +..+
T Consensus 44 ~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~---~~g~pFss~gE~~fLl~Q~vili~~if~f~~~~~~~v~ 120 (230)
T KOG3211|consen 44 LVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY---TSGYPFSSYGEYPFLLLQAVILILCIFHFSGQTVTVVQ 120 (230)
T ss_pred HhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh---hcCCCchhHHHHHHHHHHHHHHHHHHHHhccceeehhh
Confidence 357999999999999999999999999999999999994 55533322223333445554444433332211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHH
Q 028065 99 IFGLFMLVLTVFAAVALVSLLAFHGNARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFV 178 (214)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~ 178 (214)
.......+... .+.. .....+.-...+...-..-++-++|+..-.|+|++..+++.-...++-.+.--..
T Consensus 121 ~l~~~~~v~~~--------~~sk--~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARif 190 (230)
T KOG3211|consen 121 FLGYIALVVSV--------LASK--ALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIF 190 (230)
T ss_pred HHHHHHHHHHH--------HHHh--hhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHH
Confidence 22221111100 0111 1111122222222221223778899999999999999998888888888888888
Q ss_pred Hhhcc-CCceeEe
Q 028065 179 FGLLG-RDPFVAV 190 (214)
Q Consensus 179 YG~~~-~D~~i~~ 190 (214)
|.+-. +|.-+..
T Consensus 191 tsiq~t~d~~mll 203 (230)
T KOG3211|consen 191 TSIQETGDFLMLL 203 (230)
T ss_pred HHHHhcCChhhHH
Confidence 88876 4544443
No 13
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.66 E-value=0.023 Score=47.89 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=43.8
Q ss_pred hhhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHH
Q 028065 127 KIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVF 179 (214)
Q Consensus 127 ~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~Y 179 (214)
.+.+|....+.....+ +||+.+..|+||++++++.......++...|.+|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 3567777777766655 8999999999999999999999999999999999
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.31 E-value=0.017 Score=33.38 Aligned_cols=27 Identities=30% Similarity=0.186 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhccCCCccchHHHHHH
Q 028065 22 APTITFRRIVRRKSTEQFSGIPYVMTL 48 (214)
Q Consensus 22 splp~~~~i~k~kst~~~s~~p~~~~~ 48 (214)
+-+||+.+.+|+||++++|+..+....
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 568999999999999999977665443
No 15
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.59 E-value=0.061 Score=30.94 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhcCCccccchHHHHHHHH
Q 028065 144 SPLSIMRMVIKTKSVEFMPFFLSLFVFL 171 (214)
Q Consensus 144 sPL~~i~~vi~tk~~~~~p~~~~~~~~~ 171 (214)
+-+||+.+.+|+|+++++++.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4589999999999999999877665443
No 16
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.38 E-value=5.1 Score=38.81 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=46.0
Q ss_pred hhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHHH
Q 028065 129 FCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDLT 198 (214)
Q Consensus 129 ~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~~ 198 (214)
.+|++|.++-..=| +-|-.. -+++.-+.+|...-..+++.+.+=++|++.++|.-.++....|.+.
T Consensus 142 ~~G~~~q~~f~~Rf---~~Qw~~-se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~ 207 (608)
T PRK01021 142 LIGCIGLTIFSLRF---FIQWFY-LEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFP 207 (608)
T ss_pred HHHHHHHHHHHHHH---HHHHHH-HHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhH
Confidence 46666665433333 344322 3455556799888899999999999999999999987766655543
No 17
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=92.58 E-value=0.043 Score=41.83 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=52.7
Q ss_pred hccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHHHHHHHhccCh
Q 028065 33 RKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPK 93 (214)
Q Consensus 33 ~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~~~~~~~y~~~ 93 (214)
+|..|.+|..+-....+-+.+|+.|++ .+...++.++.+|.+-...+.+++.=+..|...
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~ 98 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYS 98 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 588999999999999999999999997 566777889999999999999999888877643
No 18
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=0.14 Score=38.38 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=51.6
Q ss_pred hccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHHHHHHHhccC
Q 028065 33 RKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAP 92 (214)
Q Consensus 33 ~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~~~~~~~y~~ 92 (214)
.|..|.+|.............|..|++ .+...++.++.+|.+=...+.+++.=.+.|..
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~ 101 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQ 101 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999997 45567788999999999999999998888853
No 19
>PHA02246 hypothetical protein
Probab=88.96 E-value=3.8 Score=32.87 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHH
Q 028065 15 TALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAI 79 (214)
Q Consensus 15 ~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l 79 (214)
.+....++..||+.+-+|+|++|+.|+..++..-..-.+-..--. +++-..-++++......+
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~--Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMV--LTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHh--hhCCcceeeHHHHHHHHH
Confidence 344455589999999999999999998887765544333222221 333333455555544443
No 20
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=88.09 E-value=3.7 Score=28.56 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHHHHHHHHH
Q 028065 146 LSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDLTVLEFWR 204 (214)
Q Consensus 146 L~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~~~~~~~~ 204 (214)
+-|-... |++.-+.+|..-=..+.+.+.+=++||+.++|.. +.+|-..|+.+|.
T Consensus 14 ~~QW~~S-Ek~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV----~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 14 IVQWIYS-EKAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPV----FILGQSFGLFIYI 67 (72)
T ss_pred HHHHHHH-HHcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChH----HHHHHhcChHHHH
Confidence 4443333 3444456888888899999999999999999995 5566666776653
No 21
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=85.58 E-value=17 Score=29.10 Aligned_cols=127 Identities=11% Similarity=0.211 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 028065 45 VMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHGN 124 (214)
Q Consensus 45 ~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (214)
......+.++..--. +.+. + +-+.+..++.....+..++++ +. ....+....... .....|
T Consensus 30 ~~~~~~~~~~~ihf~--LLGa-~----taa~~~~ls~~R~~~s~~~~~---~~-v~~~Fi~~~~~~--------~~~~~~ 90 (163)
T PF10688_consen 30 LLQAISCLLFAIHFA--LLGA-W----TAALSMLLSAVRNFVSIRTRS---RW-VMAVFIALSLVM--------GLFTWQ 90 (163)
T ss_pred HHHHHHHHHHHHHHH--HhCh-H----HHHHHHHHHHHHHHHHHHhCC---HH-HHHHHHHHHHHH--------HHHHHh
Confidence 344455555554443 3433 2 456777788887777666554 11 111111111011 112335
Q ss_pred chhhhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHH-HHHHHH
Q 028065 125 ARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDL-TVLEFW 203 (214)
Q Consensus 125 ~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~-~~~~~~ 203 (214)
.-.+.++.++++.....- .++ +..+ |-....+++.+|.+|++..+++....-|..... -..++|
T Consensus 91 g~~~~l~~~as~~~t~a~----------f~~---~~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i~ 155 (163)
T PF10688_consen 91 GWIELLPYAASVLGTIAL----------FML---DGIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITIY 155 (163)
T ss_pred hHHHHHHHHHHHHHHHHH----------Hhc---Cchh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 566777777766554332 112 2222 446689999999999999999998888877664 556666
Q ss_pred HH
Q 028065 204 RI 205 (214)
Q Consensus 204 ~~ 205 (214)
|.
T Consensus 156 R~ 157 (163)
T PF10688_consen 156 RL 157 (163)
T ss_pred HH
Confidence 54
No 22
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=78.73 E-value=2.1 Score=32.69 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhcc--CCceeEehhHHHH-HHHHHHHHHH
Q 028065 131 GFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLG--RDPFVAVSFIFFD-LTVLEFWRIM 206 (214)
Q Consensus 131 G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~--~D~~i~~pN~~g~-~~~~~~~~~~ 206 (214)
-+-|.+..=..-.+++.++ +|+.|.++..|..+-.+.+.+|.=|++.+ +|..+..-|..-. .=+.+.+|..
T Consensus 20 hFWaP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~ 93 (119)
T PF03650_consen 20 HFWAPVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKL 93 (119)
T ss_pred Eeehhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433334444443 68999999999999999999999999998 7887777787644 3445666653
No 23
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=77.23 E-value=3.2 Score=34.77 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=57.8
Q ss_pred HhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHHHHHHHhccCh
Q 028065 21 LAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPK 93 (214)
Q Consensus 21 ~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~~~~~~~y~~~ 93 (214)
.|-++|+.+-.|+|++|..|.......+-.|..=..|.. ..++|+.+...-.+...++..-..-..+|.++
T Consensus 155 ~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsi--q~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 155 VSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSI--QETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHH--HhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 577899999999999999999999999999999999997 66777877777777777776666555555543
No 24
>COG3952 Predicted membrane protein [Function unknown]
Probab=66.09 E-value=26 Score=26.24 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=43.0
Q ss_pred HHhcCCccccchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHHHHHHHHHHHH
Q 028065 152 VIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDLTVLEFWRIMI 207 (214)
Q Consensus 152 vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~~~~~~~~~~~ 207 (214)
..+.++.+-+|.+.--++.+.+.+=+.|.+-++|.. |++|-.+|+++|.--.
T Consensus 47 ~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV----~Vl~~~~glF~~l~nL 98 (113)
T COG3952 47 ASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPV----FVLGQACGLFIYLRNL 98 (113)
T ss_pred HHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchH----HHHHHhhhHHHHHHHH
Confidence 357788888999988999999999999999999986 6777777777775433
No 25
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=64.68 E-value=15 Score=31.80 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=41.3
Q ss_pred chhhhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhcc
Q 028065 125 ARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLG 183 (214)
Q Consensus 125 ~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~ 183 (214)
+.....|.+..++...-+ .||+.+..|+|+.+++|....+...+....=..|..+.
T Consensus 7 ~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~ 62 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQ 62 (260)
T ss_pred HHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhc
Confidence 344555555555555555 89999999999999999988888777777666666554
No 26
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.24 E-value=8.2 Score=29.03 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=41.2
Q ss_pred cCCccccchHHHHHHHHHHHHHHHHhhcc--CCceeEehhHH-HHHHHHHHHHH
Q 028065 155 TKSVEFMPFFLSLFVFLCGTSWFVFGLLG--RDPFVAVSFIF-FDLTVLEFWRI 205 (214)
Q Consensus 155 tk~~~~~p~~~~~~~~~~~~~W~~YG~~~--~D~~i~~pN~~-g~~~~~~~~~~ 205 (214)
.|..|.++....++-+..+++|+=|.+.+ +|+.+.--|.+ |..=++|.-||
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri 96 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRI 96 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999998 88888888876 44445565555
No 27
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=52.58 E-value=32 Score=23.90 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=32.5
Q ss_pred HhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHH
Q 028065 21 LAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSA 78 (214)
Q Consensus 21 ~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~ 78 (214)
.--+-|-..-.|+|. ..+|..-....+..+.+=+.||+ . ++|+..+...++|..
T Consensus 11 ~Rf~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~i--~-r~DpV~ilgq~~gl~ 64 (72)
T PF07578_consen 11 SRFIVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYAI--I-RKDPVFILGQSFGLF 64 (72)
T ss_pred HHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHH--H-HcChHHHHHHhcChH
Confidence 344555555555554 23455555688999999999996 4 455644444444443
No 28
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=46.82 E-value=49 Score=28.56 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=44.5
Q ss_pred hhhhhhhhHHHHHHHhHhhHHHHHHHHhcC------CccccchH--HHHH-HHHHHHHHHHHhhccCCceeEehh
Q 028065 127 KIFCGFAATIFSIIMYASPLSIMRMVIKTK------SVEFMPFF--LSLF-VFLCGTSWFVFGLLGRDPFVAVSF 192 (214)
Q Consensus 127 ~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk------~~~~~p~~--~~~~-~~~~~~~W~~YG~~~~D~~i~~pN 192 (214)
++++|...++++-++|++-+.=+..+.++. |.+.+++. -... .+.+.+.+.+|.+.++|..-+-||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 467999999999999987555444443333 45566533 2233 345566678999999998877666
No 29
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=43.39 E-value=18 Score=28.96 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHH
Q 028065 45 VMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIY 83 (214)
Q Consensus 45 ~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~ 83 (214)
....+++.+|+.|++ +.++ ++....|......+.+.
T Consensus 118 ~~~l~~~~~w~~~n~--~igS-~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNI--LIGS-WGGTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHHH--HHcC-HHHHHHHHHHHHHHHHH
Confidence 458899999999996 5555 66777787777766643
No 30
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=42.23 E-value=55 Score=30.31 Aligned_cols=70 Identities=23% Similarity=0.202 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHH
Q 028065 11 FGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEII 82 (214)
Q Consensus 11 l~~i~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~ 82 (214)
++..-++.=|++.=-++.-++++||.+++|....+.-+++...=++|=++ .+..+.|.+++++|++++.+
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D--~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLD--NETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEe--CCCcEEeehHhHhHHhHhhe
Confidence 44455666777888899999999999999999888888888888888741 13345788999999998875
No 31
>PRK15487 O-antigen ligase RfaL; Provisional
Probab=38.77 E-value=1.5e+02 Score=27.21 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=48.3
Q ss_pred hhhhhHHHHHHHhHhhHHHHHHH-HhcCCccccchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHHHHHHHH
Q 028065 130 CGFAATIFSIIMYASPLSIMRMV-IKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDLTVLEFW 203 (214)
Q Consensus 130 ~G~~~~~~~i~~~~sPL~~i~~v-i~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~~~~~~~ 203 (214)
.|.+|.+.-+.++.+|+....+. .|+|+. -|. .+...--..-..|++.++..--.-.|-.|++.|+-+.
T Consensus 327 ~GiiGll~ll~~~~~~l~~~~~~~~~~~~~--~~~---~~~~~l~~s~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 396 (400)
T PRK15487 327 AGILGLISLLYLYGAIIKETASSTFRKVEI--SPY---NAHLILLLSFIGFYIVRGNFEQVDINQIGIITGLLLA 396 (400)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ChH---hhhHHHHHHHHHHHhhccceeeeccchhHHHHHHHHH
Confidence 69999999999999999987666 344322 222 2222222333478888888777778999998887654
No 32
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=36.32 E-value=1.7e+02 Score=26.23 Aligned_cols=181 Identities=14% Similarity=0.038 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhccCCCccchHHHH--------HHHHH-HHHHHhcccccccCc--------eeEeeeh-----hhhHHH
Q 028065 22 APTITFRRIVRRKSTEQFSGIPYVM--------TLLNC-LLSAWYGLPFVSKNN--------ILVSTIN-----GTGSAI 79 (214)
Q Consensus 22 splp~~~~i~k~kst~~~s~~p~~~--------~~~n~-~lW~~YG~~~l~~~~--------~~i~~~N-----~~G~~l 79 (214)
|..||++.=.|+||+.++|+--... ...|+ ..|.- .+.++. .|+. .| .=|+++
T Consensus 138 SfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~----~iq~~y~~~~p~g~~pv~-~nDv~fslHa~lm 212 (372)
T KOG3145|consen 138 SFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCP----KIQNQYDTSYPLGVPPVT-LNDVVFSLHAVLM 212 (372)
T ss_pred eechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcH----HhccceeccCCCCCCccc-hhhhhhhHHHHHH
Confidence 6789999999999999988643221 11222 22221 122221 1221 22 224455
Q ss_pred HHHHHHHHHhccChhHHHH---HHHHHHHHHHHHHHHHHHHhhhcccc----chhhhhhhhhHHHHHHHhHhhHHHHHHH
Q 028065 80 EIIYVLIFLLFAPKKEKAK---IFGLFMLVLTVFAAVALVSLLAFHGN----ARKIFCGFAATIFSIIMYASPLSIMRMV 152 (214)
Q Consensus 80 ~~~~~~~~~~y~~~k~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~~i~~~~sPL~~i~~v 152 (214)
..+-+.-...|.+..+|.. .++.+.+. .+++....+ .....+ +-...+..+=...+.+=| .||...-
T Consensus 213 t~Iti~Qc~~yeR~~q~vs~~ialgil~i~-~~f~~~~~~--va~~~~~~wL~f~~~~syiKl~mTliKY---iPQa~mN 286 (372)
T KOG3145|consen 213 TVITILQCFFYERGWQRVSKGIALGILAIF-WLFAVVFMY--VAYWYVIRWLAFLNNLSYIKLAMTLIKY---IPQAYMN 286 (372)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHH-HHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHhhc
Confidence 5555555666665543321 12221111 111111111 001111 112223344444454445 8999999
Q ss_pred HhcCCccccchHHHH----HHHHHHHHHHHHhhccCCceeEehhHH--HHHHHHHHHHHHHHHHhhc
Q 028065 153 IKTKSVEFMPFFLSL----FVFLCGTSWFVFGLLGRDPFVAVSFIF--FDLTVLEFWRIMIILVHFM 213 (214)
Q Consensus 153 i~tk~~~~~p~~~~~----~~~~~~~~W~~YG~~~~D~~i~~pN~~--g~~~~~~~~~~~~~~~~~~ 213 (214)
.+.||+++-|..=.+ ....+-+.-..=..-.+||--+..|-- |.-+.=-+.|+..+.-|+.
T Consensus 287 ~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~QhyV 353 (372)
T KOG3145|consen 287 FTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQHYV 353 (372)
T ss_pred ceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhhee
Confidence 999999987742111 112222222222223355555555543 4444445778888888874
No 33
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=28.72 E-value=1.1e+02 Score=26.00 Aligned_cols=58 Identities=17% Similarity=-0.004 Sum_probs=40.8
Q ss_pred HHHHHHHHh--cCCccccchHHHHHHHHHHHHHHHHhhccCCceeEehhHHHHHHHHHHHHH
Q 028065 146 LSIMRMVIK--TKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVSFIFFDLTVLEFWRI 205 (214)
Q Consensus 146 L~~i~~vi~--tk~~~~~p~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~~~~~~~~~ 205 (214)
+.|++++.| .|+-..+++.|..+.+....+-++.|++.+.+..++ .+|.++|+....+
T Consensus 10 ~~Qi~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~--i~gi~~g~l~am~ 69 (224)
T PF13829_consen 10 RKQIWQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWL--IIGILLGLLAAMI 69 (224)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHH--HHHHHHHHHHHHH
Confidence 456666655 455566788888888888899999999999655443 4566666665544
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=26.99 E-value=1.4e+02 Score=25.36 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=38.6
Q ss_pred cccchhhhhhhhhHHHHHHHhHhhHHHHHHHHhcCCccccchHHHHHHHHHH
Q 028065 122 HGNARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCG 173 (214)
Q Consensus 122 ~~~~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~ 173 (214)
+++..++++|..|.+-+..|-+-.=-..|+++.+.|-..-+.-|+...+.|-
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL 178 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNL 178 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 4466788899988888887776555667888888887777776666666663
No 35
>PRK11387 S-methylmethionine transporter; Provisional
Probab=25.83 E-value=3.8e+02 Score=24.64 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=7.8
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 028065 15 TALFLFLAPTITFRRIVR 32 (214)
Q Consensus 15 ~ti~~~~splp~~~~i~k 32 (214)
.....|..+.-...+.+|
T Consensus 374 ~~li~y~~~~~~~i~lr~ 391 (471)
T PRK11387 374 AVVAVWLSICASHFMFRR 391 (471)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445555444433333
No 36
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=24.85 E-value=6.3e+02 Score=24.33 Aligned_cols=165 Identities=19% Similarity=0.122 Sum_probs=100.0
Q ss_pred HHHHHHHhhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHhcccccccCceeEeeehhhhHHHHHHHHHH--------
Q 028065 15 TALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLI-------- 86 (214)
Q Consensus 15 ~ti~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~~~~~-------- 86 (214)
-++.=|++.=-++.-+.|+||-+++|.-..+..++++..=+.|=+ =.+.++.|.++-++|.++...=+--
T Consensus 328 H~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYll--DneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~ 405 (592)
T KOG2489|consen 328 HSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLL--DNETSFMVLVSVGVGLLIELWKIKKAMKVEIDW 405 (592)
T ss_pred HHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheee--cCCccEEEEEeccceeeeeeeecceEEEEEEec
Confidence 344445565666777889999999999999999999999999984 1233456788889998876532110
Q ss_pred ----H-----------HhccChhHH--H-HHHHHHHHHHH-HHHHHHHHHhhhccc-cchhhhhhhhhHHHHHHHhHhhH
Q 028065 87 ----F-----------LLFAPKKEK--A-KIFGLFMLVLT-VFAAVALVSLLAFHG-NARKIFCGFAATIFSIIMYASPL 146 (214)
Q Consensus 87 ----~-----------~~y~~~k~~--~-~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~i~~~~sPL 146 (214)
. =.|..+|.+ . +..+.+.-++. +.....++.+.-.+. .-..-++-...+.+-.+.|.--+
T Consensus 406 ~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~ 485 (592)
T KOG2489|consen 406 SGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFML 485 (592)
T ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhC
Confidence 0 011111111 1 12222222211 122233334333333 33444454445555555566668
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHHHHHhh
Q 028065 147 SIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGL 181 (214)
Q Consensus 147 ~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~ 181 (214)
||+----|-||.+-+|..+.-=-++|.++==+++.
T Consensus 486 PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAF 520 (592)
T KOG2489|consen 486 PQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAF 520 (592)
T ss_pred hHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877888775444433
No 37
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.22 E-value=1.8e+02 Score=18.08 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCC
Q 028065 3 IAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTE 37 (214)
Q Consensus 3 ~~~~v~g~l~~i~ti~~~~splp~~~~i~k~kst~ 37 (214)
+-+.+.+..-.+.++.++..-+-.+.-..+.|+.+
T Consensus 2 ~~~~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 2 TYETLQGFARSIGTVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 45566677777777777777777777777666544
No 38
>PRK10580 proY putative proline-specific permease; Provisional
Probab=22.44 E-value=4.9e+02 Score=23.72 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhc
Q 028065 11 FGNATALFLFLAPTITFRRIVRRK 34 (214)
Q Consensus 11 l~~i~ti~~~~splp~~~~i~k~k 34 (214)
+++......|..+.....+.+|++
T Consensus 363 ~~~~~~~~~y~~~~~~~~~lr~~~ 386 (457)
T PRK10580 363 LATFATVWVWIMILLSQIAFRRRL 386 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566665655555553
No 39
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.57 E-value=1.5e+02 Score=22.72 Aligned_cols=19 Identities=26% Similarity=0.662 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 028065 3 IAHFLFGVFGNATALFLFL 21 (214)
Q Consensus 3 ~~~~v~g~l~~i~ti~~~~ 21 (214)
.+..++|+.|.++.+.+++
T Consensus 66 i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHH
Confidence 4567888888887766533
Done!