Query 028065
Match_columns 214
No_of_seqs 162 out of 1387
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkd_A Transmembrane domain of 19.4 38 0.0013 17.7 0.8 14 184-197 2-15 (26)
2 2nr1_A NR1 M2, M2; receptor, s 11.6 81 0.0028 16.8 0.8 13 171-183 9-21 (27)
3 2kih_A Matrix protein 2; S31N, 9.5 1E+02 0.0035 18.0 0.8 14 184-197 6-19 (43)
4 2ljb_A M2 protein, BM2 protein 8.1 78 0.0027 17.8 -0.0 14 184-197 6-19 (35)
5 2b2h_A AMT-1, ammonium transpo 6.5 4.5E+02 0.015 22.9 4.1 32 152-183 30-61 (399)
6 3bz1_X Photosystem II PSBX pro 6.4 2.3E+02 0.0079 17.3 1.5 18 161-178 10-27 (50)
7 3dad_A FH1/FH2 domain-containi 5.1 3.8E+02 0.013 23.0 2.6 30 23-52 255-284 (339)
8 3dad_A FH1/FH2 domain-containi 4.6 5.4E+02 0.019 22.0 3.3 32 144-175 254-285 (339)
9 3qrx_B Melittin; calcium-bindi 4.6 3.5E+02 0.012 14.0 1.3 14 22-35 11-24 (26)
10 2ls4_A High affinity copper up 5.8 1.9E+02 0.0065 15.2 0.0 19 185-203 2-20 (26)
No 1
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=19.38 E-value=38 Score=17.74 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=10.2
Q ss_pred CCceeEehhHHHHH
Q 028065 184 RDPFVAVSFIFFDL 197 (214)
Q Consensus 184 ~D~~i~~pN~~g~~ 197 (214)
+|..+...|.+|++
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 46677777888875
No 2
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=11.64 E-value=81 Score=16.85 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhcc
Q 028065 171 LCGTSWFVFGLLG 183 (214)
Q Consensus 171 ~~~~~W~~YG~~~ 183 (214)
+.+.+|+.+|.+.
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4567899998765
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=9.51 E-value=1e+02 Score=17.99 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=10.2
Q ss_pred CCceeEehhHHHHH
Q 028065 184 RDPFVAVSFIFFDL 197 (214)
Q Consensus 184 ~D~~i~~pN~~g~~ 197 (214)
+|..+...|.+|++
T Consensus 6 sdplv~aa~iiGIl 19 (43)
T 2kih_A 6 SDPLVVAANIIGIL 19 (43)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 56777777888875
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=8.15 E-value=78 Score=17.83 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=11.4
Q ss_pred CCceeEehhHHHHH
Q 028065 184 RDPFVAVSFIFFDL 197 (214)
Q Consensus 184 ~D~~i~~pN~~g~~ 197 (214)
+|..++..|.+|++
T Consensus 6 sDplviaA~IigiL 19 (35)
T 2ljb_A 6 SDPLVVAASIIGIL 19 (35)
T ss_dssp CCTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 68888888998875
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=6.49 E-value=4.5e+02 Score=22.90 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=23.0
Q ss_pred HHhcCCccccchHHHHHHHHHHHHHHHHhhcc
Q 028065 152 VIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLG 183 (214)
Q Consensus 152 vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~~ 183 (214)
..|+||+-++=..-.....+.++.|.++|.-.
T Consensus 30 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~l 61 (399)
T 2b2h_A 30 MVRRKNAVNMIALSFISLIITVLLWIFYGYSV 61 (399)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777776666666667788888898877654
No 6
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=6.43 E-value=2.3e+02 Score=17.33 Aligned_cols=18 Identities=22% Similarity=0.034 Sum_probs=12.2
Q ss_pred cchHHHHHHHHHHHHHHH
Q 028065 161 MPFFLSLFVFLCGTSWFV 178 (214)
Q Consensus 161 ~p~~~~~~~~~~~~~W~~ 178 (214)
+-..+++.+++.++.|-.
T Consensus 10 ~~mTpSL~NFl~SlvaG~ 27 (50)
T 3bz1_X 10 LTITPSLKGFFIGLLSGA 27 (50)
T ss_dssp -CCCHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHH
Confidence 335567888888887753
No 7
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=5.08 E-value=3.8e+02 Score=22.97 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhccCCCccchHHHHHHHHHH
Q 028065 23 PTITFRRIVRRKSTEQFSGIPYVMTLLNCL 52 (214)
Q Consensus 23 plp~~~~i~k~kst~~~s~~p~~~~~~n~~ 52 (214)
|+..+.++.++|+.++.....+.++++|+.
T Consensus 255 p~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 255 PWANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp TTHHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 355555666666666666666666666654
No 8
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=4.63 E-value=5.4e+02 Score=21.95 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhcCCccccchHHHHHHHHHHHH
Q 028065 144 SPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTS 175 (214)
Q Consensus 144 sPL~~i~~vi~tk~~~~~p~~~~~~~~~~~~~ 175 (214)
-|++.+-+.+++|+..........++++|..+
T Consensus 254 ~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 254 PPWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp CTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 46888889999999888888889999999774
No 9
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=4.60 E-value=3.5e+02 Score=13.96 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHhcc
Q 028065 22 APTITFRRIVRRKS 35 (214)
Q Consensus 22 splp~~~~i~k~ks 35 (214)
..+|.+..++|+|.
T Consensus 11 ~~LP~liSWiK~kr 24 (26)
T 3qrx_B 11 TGLPALISWIKRKR 24 (26)
T ss_pred ccchHHHHHHHHHh
Confidence 56899999999885
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=5.81 E-value=1.9e+02 Score=15.17 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=12.4
Q ss_pred CceeEehhHHHHHHHHHHH
Q 028065 185 DPFVAVSFIFFDLTVLEFW 203 (214)
Q Consensus 185 D~~i~~pN~~g~~~~~~~~ 203 (214)
|.++.+.=.+|+.+|.+++
T Consensus 2 Ng~l~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 2 NGYLCIAVAAGAGTGYFLF 20 (26)
Confidence 3455566677888877665
Done!