Query 028065
Match_columns 214
No_of_seqs 162 out of 1387
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 08:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028065.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028065hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xioa_ f.13.1.1 (A:) Sensory 15.8 1.9E+02 0.014 20.8 11.0 34 148-182 149-182 (226)
2 d1vf5c3 f.23.23.1 (C:250-286) 7.4 1.8E+02 0.013 15.2 4.4 30 6-40 5-34 (37)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 5.7 1.9E+02 0.014 14.0 2.1 17 75-91 10-26 (30)
4 d1q90a3 f.23.23.1 (A:248-292) 5.5 1.9E+02 0.014 15.8 2.1 30 6-40 4-33 (45)
5 d1jfia_ a.22.1.3 (A:) Negative 3.5 4.2E+02 0.031 14.8 4.2 18 145-162 4-22 (66)
6 d1te7a_ b.122.1.7 (A:) Hypothe 3.1 2E+02 0.014 18.6 1.0 11 145-155 77-87 (103)
7 d2croa_ a.35.1.2 (A:) cro 434 3.0 3.5E+02 0.025 14.8 2.1 34 24-58 30-64 (65)
8 d1rh5b_ f.23.28.1 (B:) Preprot 3.0 3.9E+02 0.028 15.1 2.2 11 198-208 40-50 (56)
9 d1rzhh2 f.23.10.1 (H:11-35) Ph 2.8 3.6E+02 0.026 12.7 1.8 6 175-180 7-12 (26)
10 d2p06a1 a.204.1.3 (A:1-84) Hyp 2.8 5.6E+02 0.041 14.9 3.1 32 146-177 48-79 (84)
No 1
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=15.82 E-value=1.9e+02 Score=20.80 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHHHHHhhc
Q 028065 148 IMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLL 182 (214)
Q Consensus 148 ~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~~YG~~ 182 (214)
..++..++++.+. ...-.....+..+.|.+|++.
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 149 PLRAKTRTQSSEL-ANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHHTTSCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554432 233334445667899999876
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.41 E-value=1.8e+02 Score=15.24 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCcc
Q 028065 6 FLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFS 40 (214)
Q Consensus 6 ~v~g~l~~i~ti~~~~splp~~~~i~k~kst~~~s 40 (214)
.+-|.++...++. +.|+.-+.|+|..|.+.
T Consensus 5 Rv~gl~~F~~~v~-----laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 5 RVKWMIAFICLVM-----LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 4556677666665 78899999999988765
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.74 E-value=1.9e+02 Score=13.99 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHhcc
Q 028065 75 TGSAIEIIYVLIFLLFA 91 (214)
Q Consensus 75 ~G~~l~~~~~~~~~~y~ 91 (214)
++++++.++..++++-+
T Consensus 10 fac~i~lfffaiffrep 26 (30)
T d2axtt1 10 FACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 44455555555555433
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.48 E-value=1.9e+02 Score=15.83 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCcc
Q 028065 6 FLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFS 40 (214)
Q Consensus 6 ~v~g~l~~i~ti~~~~splp~~~~i~k~kst~~~s 40 (214)
.+-|.++...++. +.|+.-+.|+|..|.+.
T Consensus 4 Rv~gll~F~~~v~-----laQi~LVLKKKQfEKVQ 33 (45)
T d1q90a3 4 RIQGLLVFFSFVL-----LTQVLLVLKKKQFEKVQ 33 (45)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3556666666665 77888888888876543
No 5
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.46 E-value=4.2e+02 Score=14.75 Aligned_cols=18 Identities=6% Similarity=0.320 Sum_probs=12.6
Q ss_pred hHHHHHHHHh-cCCccccc
Q 028065 145 PLSIMRMVIK-TKSVEFMP 162 (214)
Q Consensus 145 PL~~i~~vi~-tk~~~~~p 162 (214)
|++.+++++| ..+...++
T Consensus 4 P~srVkkimk~~~~~~~is 22 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVA 22 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBC
T ss_pred ChHHHHHHHhcCCcccccc
Confidence 8889999999 44444444
No 6
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=3.06 E-value=2e+02 Score=18.61 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=8.1
Q ss_pred hHHHHHHHHhc
Q 028065 145 PLSIMRMVIKT 155 (214)
Q Consensus 145 PL~~i~~vi~t 155 (214)
||+++|++||+
T Consensus 77 ~L~eLK~vI~e 87 (103)
T d1te7a_ 77 TLTELKKVIAD 87 (103)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 57788888774
No 7
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=3.02 E-value=3.5e+02 Score=14.78 Aligned_cols=34 Identities=9% Similarity=-0.088 Sum_probs=16.8
Q ss_pred HHHHHHHHHhccCCCccchHHHHHH-HHHHHHHHhc
Q 028065 24 TITFRRIVRRKSTEQFSGIPYVMTL-LNCLLSAWYG 58 (214)
Q Consensus 24 lp~~~~i~k~kst~~~s~~p~~~~~-~n~~lW~~YG 58 (214)
-.++.++.+.++... ..+.-++-. -...-|+.+|
T Consensus 30 ~~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 30 QQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp HHHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHHC
T ss_pred HhHHHHHHCCCCCCH-HHHHHHHHHhCCCHHHHhhC
Confidence 456677766655333 222222222 2236677776
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.01 E-value=3.9e+02 Score=15.14 Aligned_cols=11 Identities=0% Similarity=-0.390 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 028065 198 TVLEFWRIMII 208 (214)
Q Consensus 198 ~~~~~~~~~~~ 208 (214)
.|+.++.+|+.
T Consensus 40 IGf~I~li~~~ 50 (56)
T d1rh5b_ 40 IGYIIHVPATY 50 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 9
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.81 E-value=3.6e+02 Score=12.66 Aligned_cols=6 Identities=0% Similarity=-0.070 Sum_probs=2.6
Q ss_pred HHHHHh
Q 028065 175 SWFVFG 180 (214)
Q Consensus 175 ~W~~YG 180 (214)
+|..|+
T Consensus 7 iw~fw~ 12 (26)
T d1rzhh2 7 IYSFWI 12 (26)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 10
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.79 E-value=5.6e+02 Score=14.87 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCccccchHHHHHHHHHHHHHH
Q 028065 146 LSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWF 177 (214)
Q Consensus 146 L~~i~~vi~tk~~~~~p~~~~~~~~~~~~~W~ 177 (214)
..++|+.+++.+++.+-=.+.=+.-.+.-+|-
T Consensus 48 mdelreavekedwenlrdelldvanfcmylwg 79 (84)
T d2p06a1 48 MDELREAVEKEDWENLRDELLDVANFCMYLWG 79 (84)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788889999998877555544445555553
Done!