BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028067
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 285 bits (729), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/197 (70%), Positives = 161/197 (81%), Gaps = 18/197 (9%)
Query: 14 GSGGFGKIEE-DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVS 72
G+ +G +E Y++ HH+H ++QC+S+LVKHIKAP+HLVWSLVRRFDQPQKYKPFVS
Sbjct: 26 GTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVS 85
Query: 73 RCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSN 132
RC V GD +IGS+REVNVKSGLPATTSTERLELLDDEEHI G++I+GGDHRLK
Sbjct: 86 RCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLK------- 138
Query: 133 FISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL 192
NYSSI+TVHPE+I+GR GT+VIESFVVDVP GNTKDETCYFVEALI+CNL
Sbjct: 139 ----------NYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNL 188
Query: 193 KSLADVSEHLAVQDRTE 209
KSLADVSE LA QD T+
Sbjct: 189 KSLADVSERLASQDITQ 205
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 124/193 (64%), Positives = 154/193 (79%), Gaps = 18/193 (9%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG- 78
K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG
Sbjct: 8 KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK
Sbjct: 68 KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK------------- 114
Query: 139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SLADV
Sbjct: 115 ----NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170
Query: 199 SEHLAVQDRTEPI 211
+E L + + I
Sbjct: 171 TERLQAESMEKKI 183
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 124/193 (64%), Positives = 154/193 (79%), Gaps = 18/193 (9%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG- 78
K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG
Sbjct: 8 KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK
Sbjct: 68 KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK------------- 114
Query: 139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+CNL SLADV
Sbjct: 115 ----NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170
Query: 199 SEHLAVQDRTEPI 211
+E L + + I
Sbjct: 171 TERLQAESMEKKI 183
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 183
Score = 258 bits (660), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 123/193 (63%), Positives = 153/193 (79%), Gaps = 18/193 (9%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG- 78
K+E +YIK+HH+H++ + QCSS+LVKHIKAP+HLVWS+VRRFD+PQKYKPF+SRC+VQG
Sbjct: 8 KVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGK 67
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
L++GSVREV++KSGLPAT STE LE+LDD EHI G+RIVGGDHRLK
Sbjct: 68 KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK------------- 114
Query: 139 SKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198
NYSS +++H E IDG+ GTL IESFVVDVP+GNTK+ETC+FVEALI+ NL SLADV
Sbjct: 115 ----NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADV 170
Query: 199 SEHLAVQDRTEPI 211
+E L + + I
Sbjct: 171 TERLQAESMEKKI 183
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 116/175 (66%), Gaps = 22/175 (12%)
Query: 24 DYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQGD-LQ 81
+++ HH HDV QC SS+V+ I AP VW+LVRRFD P+ YK F+ +C IVQGD L
Sbjct: 63 EHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLH 122
Query: 82 IGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL 141
+G +REV V SGLPA +STERLE+LD+E H+ +VGGDHRLK
Sbjct: 123 VGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLK---------------- 166
Query: 142 QNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196
NY S+ T+H GT+V+ES++VDVP GNT++ET FV+ +++CNL+SLA
Sbjct: 167 -NYRSVTTLH---ASDDEGTVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLA 217
>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 193
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 19/183 (10%)
Query: 23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
++ I H + + CSS + I AP LVWS+VRRFD+PQ YKPF+ C V+ ++
Sbjct: 16 KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKPFIKSCSVEQNFEM 75
Query: 81 QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
++G R+V V SGLPA TSTERL++LDDE + G I+GG+HRL
Sbjct: 76 RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 120
Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
NY S+ TVH + R T+V+ES+VVD+P+GN++D+T F + ++K NL+ LA V+E
Sbjct: 121 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 178
Query: 201 HLA 203
+A
Sbjct: 179 AMA 181
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 22/195 (11%)
Query: 16 GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
G K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC
Sbjct: 1 GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75 IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
++ GD +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLK
Sbjct: 61 LISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK--------- 111
Query: 135 STSSSKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191
NY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K N
Sbjct: 112 --------NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLN 162
Query: 192 LKSLADVSEHLAVQD 206
L+ L + + D
Sbjct: 163 LQKLGVAATSAPMHD 177
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC ++ G
Sbjct: 19 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 78
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
D +GSVREV V SGLPA+TSTERLE +DD+ + RIVGG+HRLK
Sbjct: 79 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLK------------- 125
Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
NY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L
Sbjct: 126 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 180
Query: 196 ADVSEHLAVQD 206
+ + D
Sbjct: 181 GVAATSAPMHD 191
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 22/195 (11%)
Query: 16 GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
G K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC
Sbjct: 1 GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75 IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
++ GD +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLK
Sbjct: 61 LISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK--------- 111
Query: 135 STSSSKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191
NY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K N
Sbjct: 112 --------NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLN 162
Query: 192 LKSLADVSEHLAVQD 206
L+ L + + D
Sbjct: 163 LQKLGVAATSAPMHD 177
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC ++ G
Sbjct: 16 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 75
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
D +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLK
Sbjct: 76 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK------------- 122
Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
NY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L
Sbjct: 123 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 177
Query: 196 ADVSEHLAVQD 206
+ + D
Sbjct: 178 GVAATSAPMHD 188
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC ++ G
Sbjct: 4 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 63
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
D +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLK
Sbjct: 64 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK------------- 110
Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
NY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L
Sbjct: 111 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 165
Query: 196 ADVSEHLAVQD 206
+ + D
Sbjct: 166 GVAATSAPMHD 176
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 22/191 (11%)
Query: 20 KIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC-IVQG 78
K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC ++ G
Sbjct: 19 KTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG 78
Query: 79 DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSS 138
D +GSVREV V SGLPA+TSTERLE +DD+ + R+VGG+HRLK
Sbjct: 79 DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLK------------- 125
Query: 139 SKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195
NY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K NL+ L
Sbjct: 126 ----NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKL 180
Query: 196 ADVSEHLAVQD 206
+ + D
Sbjct: 181 GVAATSAPMHD 191
>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|B Chain B, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|C Chain C, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|D Chain D, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3QN1|A Chain A, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
Length = 193
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 113/183 (61%), Gaps = 19/183 (10%)
Query: 23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
++ I H + + CSS + I AP LVWS+VRRFD+PQ YK F+ C V+ ++
Sbjct: 16 KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 75
Query: 81 QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
++G R+V V SGLPA TSTERL++LDDE + G I+GG+HRL
Sbjct: 76 RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 120
Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
NY S+ TVH + R T+V+ES+VVD+P+GN++D+T F + ++K NL+ LA V+E
Sbjct: 121 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 178
Query: 201 HLA 203
+A
Sbjct: 179 AMA 181
>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
pdb|3K3K|B Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
Length = 211
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 113/183 (61%), Gaps = 19/183 (10%)
Query: 23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
++ I H + + CSS + I AP LVWS+VRRFD+PQ YK F+ C V+ ++
Sbjct: 34 KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 93
Query: 81 QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
++G R+V V SGLPA TSTERL++LDDE + G I+GG+HRL
Sbjct: 94 RVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 138
Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
NY S+ TVH + R T+V+ES+VVD+P+GN++D+T F + ++K NL+ LA V+E
Sbjct: 139 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 196
Query: 201 HLA 203
+A
Sbjct: 197 AMA 199
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 118/195 (60%), Gaps = 22/195 (11%)
Query: 16 GGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC- 74
G K E IK +H+ + C+S + + I AP +VW L+RRFD P++YK FV RC
Sbjct: 1 GSEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCR 60
Query: 75 IVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFI 134
++ GD +GSVREV V SGLP +TSTERLE +DD+ + R+VGG+HRLK
Sbjct: 61 LISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLK--------- 111
Query: 135 STSSSKLQNYSSIVTVHPEVID---GRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191
NY S+ +V+ E ++ G+ T+V+ES+ VD+P+GNT+++T FV+ ++K N
Sbjct: 112 --------NYKSVTSVN-EFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLN 162
Query: 192 LKSLADVSEHLAVQD 206
L+ L + + D
Sbjct: 163 LQKLGVAATSAPMHD 177
>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|B Chain B, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|C Chain C, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
Length = 194
Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 112/183 (61%), Gaps = 19/183 (10%)
Query: 23 EDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG--DL 80
++ I H + + CSS + I AP LVWS+VRRFD+PQ YK F+ C V+ ++
Sbjct: 17 KNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEM 76
Query: 81 QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSK 140
++G R+V V SGL A TSTERL++LDDE + G I+GG+HRL
Sbjct: 77 RVGCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLT--------------- 121
Query: 141 LQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
NY S+ TVH + R T+V+ES+VVD+P+GN++D+T F + ++K NL+ LA V+E
Sbjct: 122 --NYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAE 179
Query: 201 HLA 203
+A
Sbjct: 180 AMA 182
>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
pdb|3OJI|B Chain B, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
Length = 189
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
I+ HH + C+S + + AP H +W VR F P KYK F+ C ++ +
Sbjct: 17 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 76
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
+++G++REV+V SGLPA+TS E LE+LD+E+ I R++GG+HR
Sbjct: 77 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 120
Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
L NY S+ +V+ V+ R ++V+ES++VD+P GNT+++T FV+ ++K NL++
Sbjct: 121 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 179
Query: 195 LADVS 199
LA +S
Sbjct: 180 LAVIS 184
>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
pdb|4DSC|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
Length = 188
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
I+ HH + C+S + + AP H +W VR F P KYK F+ C ++ +
Sbjct: 16 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 75
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
+++G++REV+V SGLPA+TS E LE+LD+E+ I R++GG+HR
Sbjct: 76 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 119
Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
L NY S+ +V+ V+ R ++V+ES++VD+P GNT+++T FV+ ++K NL++
Sbjct: 120 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 178
Query: 195 LADVS 199
LA +S
Sbjct: 179 LAVIS 183
>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
pdb|4DSB|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
Length = 186
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
I+ HH + C+S + + AP H +W VR F P KYK F+ C ++ +
Sbjct: 14 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 73
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
+++G++REV+V SGLPA+TS E LE+LD+E+ I R++GG+HR
Sbjct: 74 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 117
Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
L NY S+ +V+ V+ R ++V+ES++VD+P GNT+++T FV+ ++K NL++
Sbjct: 118 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 176
Query: 195 LADVS 199
LA +S
Sbjct: 177 LAVIS 181
>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|3KLX|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|4DS8|A Chain A, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 209
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 28/185 (15%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ------GD 79
I+ HH + C+S + + AP H +W VR F P KYK F+ C ++ +
Sbjct: 37 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 96
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
+++G++REV+V SGLPA+TS E LE+LD+E+ I R++GG+HR
Sbjct: 97 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR---------------- 140
Query: 140 KLQNYSSIVTVHPEVI-----DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKS 194
L NY S+ +V+ V+ R ++V+ES++VD+P GNT+++T FV+ ++K NL++
Sbjct: 141 -LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQN 199
Query: 195 LADVS 199
LA +S
Sbjct: 200 LAVIS 204
>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3KAY|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3NMN|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|C Chain C, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 178
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 112/182 (61%), Gaps = 22/182 (12%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
I H + + + +CSS L + I AP VWS+VRRFD+PQ YK F+ C V D +++G
Sbjct: 11 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 70
Query: 84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRL+ N
Sbjct: 71 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR-----------------N 113
Query: 144 YSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
Y S+ TVH E + R T+V+ES+VVDVP+GN++++T F + +I+ NL+ LA ++E
Sbjct: 114 YKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 173
Query: 201 HL 202
+
Sbjct: 174 AM 175
>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|B Chain B, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|C Chain C, Crystal Structure Of (+)-Aba-Bound Pyl1
Length = 208
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 112/182 (61%), Gaps = 22/182 (12%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
I H + + + +CSS L + I AP VWS+VRRFD+PQ YK F+ C V D +++G
Sbjct: 41 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 100
Query: 84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRL+ N
Sbjct: 101 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR-----------------N 143
Query: 144 YSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
Y S+ TVH E + R T+V+ES+VVDVP+GN++++T F + +I+ NL+ LA ++E
Sbjct: 144 YKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 203
Query: 201 HL 202
+
Sbjct: 204 AM 205
>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
pdb|3NEF|A Chain A, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEF|B Chain B, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEG|A Chain A, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
pdb|3NEG|B Chain B, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
Length = 202
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 112/182 (61%), Gaps = 22/182 (12%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
I H + + + +CSS L + I AP VWS+VRRFD+PQ YK F+ C V D +++G
Sbjct: 25 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 84
Query: 84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRL+ N
Sbjct: 85 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR-----------------N 127
Query: 144 YSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
Y S+ TVH E + R T+V+ES+VVDVP+GN++++T F + +I+ NL+ LA ++E
Sbjct: 128 YKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 187
Query: 201 HL 202
+
Sbjct: 188 AM 189
>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 186
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 112/182 (61%), Gaps = 22/182 (12%)
Query: 26 IKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGD--LQIG 83
I H + + + +CSS L + I AP VWS+VRRFD+PQ YK F+ C V D +++G
Sbjct: 20 IAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVG 79
Query: 84 SVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQN 143
R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRL+ N
Sbjct: 80 CTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR-----------------N 122
Query: 144 YSSIVTVH---PEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200
Y S+ TVH E + R T+V+ES+VVDVP+GN++++T F + +I+ NL+ LA ++E
Sbjct: 123 YKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 182
Query: 201 HL 202
+
Sbjct: 183 AM 184
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 76 VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSN 132
++GD G+++ + + G P TT T R++ ++ E F ++ GD L I + N
Sbjct: 44 IKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIEN 100
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 76 VQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKII 127
V+GD G+VR + + G P TT T R + ++ E + ++ GD L I
Sbjct: 44 VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFI 95
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 80 LQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSS 139
L + +V+ V ++S T RL+ L + ++GG L SN S +
Sbjct: 134 LIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTL------SNIGSIGGT 187
Query: 140 KLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC 181
Y+ V + PEV G GT + +P N K E C
Sbjct: 188 ----YAKPVILPPEVAIGALGT------IKALPRFNEKGEVC 219
>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
Efi-500396) From Nitratiruptor Sp. Sb155-2
Length = 427
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 14 GSGGFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAP-VHLVWSLVRRFDQPQKYKPFVS 72
GSG F K ++++ + V+D + L K + VH+VW+ Y +
Sbjct: 220 GSGEFAKFFKEFLNQ--TRPVNDTKSFLELFKELHTLFVHMVWANEEEIQTIASYNAHII 277
Query: 73 RCIVQGDLQIGSVREVNVKSGLPATTSTERL 103
C + L V ++ +P +T+ L
Sbjct: 278 HCPISNRLLGNGVLDLEKIKSIPYAIATDGL 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,861,119
Number of Sequences: 62578
Number of extensions: 274366
Number of successful extensions: 690
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 32
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)