Query 028067
Match_columns 214
No_of_seqs 132 out of 870
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 1.6E-23 3.5E-28 169.1 19.4 117 37-169 1-120 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.8 2.8E-17 6E-22 134.2 17.2 116 37-169 4-123 (151)
3 PF10604 Polyketide_cyc2: Poly 99.8 2.7E-16 5.9E-21 120.9 19.9 137 38-200 3-139 (139)
4 cd07821 PYR_PYL_RCAR_like Pyra 99.7 1.9E-16 4.2E-21 121.6 17.7 138 38-200 2-140 (140)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 4E-14 8.7E-19 110.9 16.1 137 39-201 1-144 (144)
6 cd08862 SRPBCC_Smu440-like Lig 99.6 7.6E-14 1.6E-18 107.8 16.9 136 38-201 2-138 (138)
7 cd08865 SRPBCC_10 Ligand-bindi 99.6 7.2E-14 1.6E-18 107.0 16.0 136 40-201 2-140 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.6 1.3E-13 2.7E-18 107.9 15.6 139 39-201 1-142 (142)
9 cd07822 SRPBCC_4 Ligand-bindin 99.5 2E-12 4.3E-17 99.3 17.2 140 38-200 1-141 (141)
10 cd07818 SRPBCC_1 Ligand-bindin 99.5 9.3E-13 2E-17 104.0 15.4 139 36-201 1-150 (150)
11 cd07819 SRPBCC_2 Ligand-bindin 99.4 1.3E-11 2.8E-16 95.3 16.9 135 37-198 2-139 (140)
12 cd07817 SRPBCC_8 Ligand-bindin 99.4 4.6E-12 1E-16 97.9 14.1 136 39-200 2-138 (139)
13 cd07813 COQ10p_like Coenzyme Q 99.4 9E-12 1.9E-16 97.6 13.1 134 40-201 2-137 (138)
14 cd07814 SRPBCC_CalC_Aha1-like 99.4 1.7E-11 3.7E-16 94.5 13.4 137 39-201 2-139 (139)
15 cd08860 TcmN_ARO-CYC_like N-te 99.4 3.5E-11 7.5E-16 97.3 15.5 141 38-203 2-146 (146)
16 cd07825 SRPBCC_7 Ligand-bindin 99.3 6.3E-11 1.4E-15 92.8 12.9 138 38-200 1-144 (144)
17 cd07824 SRPBCC_6 Ligand-bindin 99.3 1.8E-10 4E-15 91.5 15.7 134 40-198 4-145 (146)
18 cd05018 CoxG Carbon monoxide d 99.3 1.3E-10 2.8E-15 90.1 13.5 142 38-200 2-144 (144)
19 cd07812 SRPBCC START/RHO_alpha 99.2 1.4E-09 3.1E-14 80.4 15.1 133 40-197 2-139 (141)
20 cd07823 SRPBCC_5 Ligand-bindin 99.1 2.4E-09 5.1E-14 85.1 13.1 142 40-200 2-145 (146)
21 cd07820 SRPBCC_3 Ligand-bindin 99.1 5.8E-09 1.3E-13 82.0 14.5 103 40-166 2-109 (137)
22 PF03364 Polyketide_cyc: Polyk 99.0 2E-08 4.3E-13 77.3 13.3 126 47-196 1-130 (130)
23 PRK10724 hypothetical protein; 98.9 4E-08 8.8E-13 80.8 14.5 134 37-203 15-151 (158)
24 cd08893 SRPBCC_CalC_Aha1-like_ 98.8 1.5E-07 3.2E-12 72.5 14.0 136 38-201 1-136 (136)
25 cd08898 SRPBCC_CalC_Aha1-like_ 98.8 1.4E-07 3.1E-12 73.5 13.2 143 38-201 2-145 (145)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.8 7.2E-08 1.6E-12 78.0 11.8 129 37-203 11-139 (157)
27 cd08894 SRPBCC_CalC_Aha1-like_ 98.7 7.8E-07 1.7E-11 70.2 13.2 132 43-201 4-139 (139)
28 cd08900 SRPBCC_CalC_Aha1-like_ 98.5 7E-06 1.5E-10 64.9 15.1 133 43-201 4-143 (143)
29 cd08891 SRPBCC_CalC Ligand-bin 98.5 6.1E-06 1.3E-10 65.7 14.6 140 39-201 2-149 (149)
30 COG3427 Carbon monoxide dehydr 98.5 1.3E-06 2.7E-11 71.5 10.3 105 39-165 3-109 (146)
31 cd08897 SRPBCC_CalC_Aha1-like_ 98.5 6.7E-06 1.5E-10 64.3 13.8 126 39-200 2-132 (133)
32 cd07826 SRPBCC_CalC_Aha1-like_ 98.5 7.5E-06 1.6E-10 65.0 14.0 135 42-200 3-141 (142)
33 cd08896 SRPBCC_CalC_Aha1-like_ 98.5 9.5E-06 2.1E-10 64.4 14.5 136 43-200 4-145 (146)
34 PF06240 COXG: Carbon monoxide 98.4 6.4E-06 1.4E-10 65.6 11.7 134 46-199 4-139 (140)
35 cd08895 SRPBCC_CalC_Aha1-like_ 98.4 4.2E-05 9.2E-10 60.7 15.9 131 43-200 4-145 (146)
36 cd08901 SRPBCC_CalC_Aha1-like_ 98.3 1.6E-05 3.4E-10 62.6 12.8 129 39-201 2-132 (136)
37 PF08327 AHSA1: Activator of H 98.3 2.3E-05 4.9E-10 59.4 12.8 124 48-200 1-124 (124)
38 cd08876 START_1 Uncharacterize 98.3 0.00015 3.3E-09 60.0 17.9 148 37-199 41-194 (195)
39 COG5637 Predicted integral mem 98.3 1.6E-05 3.4E-10 67.3 11.7 147 33-207 66-216 (217)
40 cd08892 SRPBCC_Aha1 Putative h 98.1 0.00018 3.8E-09 56.1 13.8 121 44-200 5-125 (126)
41 COG2867 Oligoketide cyclase/li 98.0 7.5E-05 1.6E-09 61.0 11.1 138 38-205 3-141 (146)
42 COG3832 Uncharacterized conser 98.0 0.00015 3.2E-09 58.7 12.7 102 36-157 7-108 (149)
43 PTZ00220 Activator of HSP-90 A 97.2 0.0047 1E-07 48.8 10.5 92 47-165 1-93 (132)
44 cd08905 START_STARD1-like Chol 96.1 0.56 1.2E-05 39.9 15.9 149 37-201 49-208 (209)
45 PF08982 DUF1857: Domain of un 95.9 0.27 5.9E-06 40.3 12.3 60 50-115 19-79 (149)
46 cd08874 START_STARD9-like C-te 95.8 1 2.3E-05 38.5 16.4 31 46-76 52-82 (205)
47 cd08877 START_2 Uncharacterize 95.7 0.5 1.1E-05 40.0 13.9 156 39-201 46-214 (215)
48 cd08906 START_STARD3-like Chol 95.6 1.3 2.8E-05 37.8 17.1 149 37-201 49-208 (209)
49 COG4276 Uncharacterized conser 95.5 1.1 2.3E-05 36.7 14.9 106 46-174 9-120 (153)
50 PF10698 DUF2505: Protein of u 95.2 0.9 2E-05 36.9 13.1 132 41-199 3-155 (159)
51 cd08903 START_STARD5-like Lipi 94.1 3.2 7E-05 35.2 16.4 31 46-76 53-85 (208)
52 cd08913 START_STARD14-like Lip 94.0 2.7 5.9E-05 37.0 14.1 31 46-76 88-118 (240)
53 KOG3177 Oligoketide cyclase/li 93.6 1.4 3E-05 38.4 11.3 144 17-201 62-210 (227)
54 cd08873 START_STARD14_15-like 93.4 5.1 0.00011 35.3 15.9 114 39-166 79-202 (235)
55 cd08871 START_STARD10-like Lip 92.9 5.3 0.00011 33.9 18.0 143 46-201 54-202 (222)
56 cd08869 START_RhoGAP C-termina 92.5 5.7 0.00012 33.3 13.8 141 40-200 47-195 (197)
57 cd08868 START_STARD1_3_like Ch 90.2 10 0.00022 31.8 16.0 31 46-76 55-86 (208)
58 cd08863 SRPBCC_DUF1857 DUF1857 90.2 9 0.0002 31.2 16.0 63 50-119 18-82 (141)
59 smart00234 START in StAR and p 89.5 11 0.00023 31.0 16.0 144 46-203 52-204 (206)
60 cd00177 START Lipid-binding ST 89.1 9.9 0.00021 30.2 17.3 39 36-76 38-76 (193)
61 cd08911 START_STARD7-like Lipi 88.2 15 0.00032 31.1 17.2 142 46-201 52-206 (207)
62 cd08870 START_STARD2_7-like Li 87.3 17 0.00036 30.7 16.9 141 46-200 57-207 (209)
63 cd08908 START_STARD12-like C-t 84.8 24 0.00052 30.2 16.0 146 37-201 52-203 (204)
64 cd08914 START_STARD15-like Lip 82.0 36 0.00077 30.0 15.2 37 38-76 79-115 (236)
65 cd08910 START_STARD2-like Lipi 75.3 49 0.0011 27.9 14.3 142 46-200 56-205 (207)
66 cd08867 START_STARD4_5_6-like 74.4 50 0.0011 27.5 16.1 37 38-76 47-85 (206)
67 KOG2936 Uncharacterized conser 66.5 33 0.00072 31.4 7.9 114 44-192 178-293 (301)
68 cd08904 START_STARD6-like Lipi 64.0 92 0.002 26.6 16.3 38 37-76 46-83 (204)
69 PF01852 START: START domain; 60.8 90 0.0019 25.3 15.9 146 37-202 46-203 (206)
70 PF11687 DUF3284: Domain of un 58.8 84 0.0018 24.4 8.5 93 43-165 3-99 (120)
71 cd08902 START_STARD4-like Lipi 37.8 2.7E+02 0.0058 24.1 15.5 31 46-76 54-84 (202)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.92 E-value=1.6e-23 Score=169.13 Aligned_cols=117 Identities=18% Similarity=0.272 Sum_probs=101.1
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCC-C-CccCccceEEEE-ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEE
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQ-P-QKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIF 113 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~-l-~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~ 113 (214)
.+++.++ +|+||||+||++++||.+ + +.|+|.|++|++ +|++++||+|.+++.+|.+..+++|||+++|+++|++
T Consensus 1 ~~~~~e~--~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEV--ELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEE--EecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 3678888 999999999999999994 4 689999999985 7888899999999987755568999999999999999
Q ss_pred EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067 114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV 169 (214)
Q Consensus 114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~ 169 (214)
+|++++|+.+. +|+++|.++++|.|.++++|.++|+..|...
T Consensus 79 ~y~vveg~~~~--------------~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~ 120 (148)
T cd07816 79 KYTVIEGDVLK--------------DGYKSYKVEIKFVPKGDGGCVVKWTIEYEKK 120 (148)
T ss_pred EEEEEeccccc--------------CceEEEEEEEEEEECCCCCEEEEEEEEEEEC
Confidence 99999986532 3689999999999997788888888877654
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.77 E-value=2.8e-17 Score=134.16 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=97.1
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCC-CCccCc-cceEEEE-ecCCCCC-eEEEEEeeCCCCcceEEEEEEEEeCCCcE
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQ-PQKYKP-FVSRCIV-QGDLQIG-SVREVNVKSGLPATTSTERLELLDDEEHI 112 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~-l~~W~P-~V~s~~v-eG~g~VG-svR~l~~~~G~p~~~v~ErL~~~D~~~~~ 112 (214)
.+++.++ ++++||+++|+++..... +++-.| .|+++++ +|++++| ++|.+++..|.|...++||++.+|+++++
T Consensus 4 ~~~~~E~--~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~ 81 (151)
T PF00407_consen 4 GKLEVEV--EVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKT 81 (151)
T ss_dssp EEEEEEE--EESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTE
T ss_pred EEEEEEE--EecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcE
Confidence 4678888 999999999999997444 477777 5688875 8998777 99999999777777899999999999999
Q ss_pred EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEe
Q 028067 113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVV 169 (214)
Q Consensus 113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~ 169 (214)
++|+++||+... -+..|.+++++.|.++++|.++|++.|+..
T Consensus 82 ~~y~viEGd~l~---------------~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~ 123 (151)
T PF00407_consen 82 ITYTVIEGDVLG---------------DYKSFKSTIQKIPKGDGGCVVKWTIEYEKK 123 (151)
T ss_dssp EEEEEEEETTGT---------------TTEEEEEEEEEEEETTSCEEEEEEEEEEES
T ss_pred EEEEEEeccccc---------------cEEEEEEEEEecCCCCCceEEEEEEEEEec
Confidence 999999997533 358999999999998888999999988764
No 3
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.76 E-value=2.7e-16 Score=120.93 Aligned_cols=137 Identities=23% Similarity=0.234 Sum_probs=108.7
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI 117 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i 117 (214)
+++.++ +|+|||++||++++|+.++++|.|.+.++++.+.+++|..+.++. .|. ..++++++++||+++.+.|++
T Consensus 3 ~~~~~~--~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~~~~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 3 KVEVSI--EVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRV-AGR--GTVREEITEYDPEPRRITWRF 77 (139)
T ss_dssp EEEEEE--EESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEE-CSC--SEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEE--EECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEe-ccc--cceeEEEEEecCCCcEEEEEE
Confidence 567778 999999999999999999999999999998754333566677775 442 379999999998789999999
Q ss_pred EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067 118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 197 (214)
Q Consensus 118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~ 197 (214)
. . .|+.++..++++.|.+ +||.++|...+.. .++.......+..++.+.++..|++|++
T Consensus 78 ~--~-----------------~~~~~~~~~~~~~~~~-~gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 136 (139)
T PF10604_consen 78 V--P-----------------SGFTNGTGRWRFEPVG-DGTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKR 136 (139)
T ss_dssp E--S-----------------SSSCEEEEEEEEEEET-TTEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E--e-----------------cceeEEEEEEEEEEcC-CCEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 6 1 2557999999999998 6687777776554 2233334566888999999999999999
Q ss_pred HHh
Q 028067 198 VSE 200 (214)
Q Consensus 198 ~le 200 (214)
.+|
T Consensus 137 ~~E 139 (139)
T PF10604_consen 137 AAE 139 (139)
T ss_dssp HHH
T ss_pred ccC
Confidence 987
No 4
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.75 E-value=1.9e-16 Score=121.65 Aligned_cols=138 Identities=33% Similarity=0.520 Sum_probs=113.0
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEec-CCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQG-DLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG-~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
+++.++ +|+||+++||+++.|+.+++.|.|.+.++++.+ ..++|+.+.+.+..|. .++++++++|+.++.+.|+
T Consensus 2 ~i~~~~--~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~~ 76 (140)
T cd07821 2 KVTVSV--TIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSYR 76 (140)
T ss_pred cEEEEE--EECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEEE
Confidence 567788 999999999999999999999999999998753 3358999998887663 6899999999976889999
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
+.+++. |+.++.+++++.|.++++|.++++..+. ++.+.....+..++...+..+|++|+
T Consensus 77 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~t~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~L~ 136 (140)
T cd07821 77 IVEGPL-----------------PVKNYVATIRVTPEGDGGTRVTWTAEFD---PPEGLTDELARAFLTGVYRAGLAALK 136 (140)
T ss_pred ecCCCC-----------------CcccceEEEEEEECCCCccEEEEEEEEe---cCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 988633 4578999999999886688777776643 33324456788899999999999999
Q ss_pred HHHh
Q 028067 197 DVSE 200 (214)
Q Consensus 197 ~~le 200 (214)
+.++
T Consensus 137 ~~~~ 140 (140)
T cd07821 137 AALE 140 (140)
T ss_pred HhhC
Confidence 9875
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.61 E-value=4e-14 Score=110.91 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=98.7
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCC-----CCcceEEEEEEEEeCCCcE
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSG-----LPATTSTERLELLDDEEHI 112 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G-----~p~~~v~ErL~~~D~~~~~ 112 (214)
|+.++ .|+||+++||+++.|++++++|.|.|.+|++ ++.+ .+.........+ .+ ..++.++.+.++.++.
T Consensus 1 ~~~~~--~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~ 76 (144)
T cd08866 1 VVARV--RVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKFE-ARVVLELREREEFPRE 76 (144)
T ss_pred CeEEE--EECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeeee-EEEEEEEEEecCCCce
Confidence 35678 9999999999999999999999999999985 4422 222111110011 11 2355667777765789
Q ss_pred EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecC-CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 028067 113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191 (214)
Q Consensus 113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~-~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~g 191 (214)
++|++++| |+..+.++.++.|.++ ++|.++|.++. ++..+.....+..++...+...
T Consensus 77 i~~~~~~g-------------------~~~~~~g~w~~~~~~~~~~t~v~~~~~~---~~~~~~p~~l~~~~~~~~~~~~ 134 (144)
T cd08866 77 LDFEMVEG-------------------DFKRFEGSWRLEPLADGGGTLLTYEVEV---KPDFFAPVFLVEFVLRQDLPTN 134 (144)
T ss_pred EEEEEcCC-------------------chhceEEEEEEEECCCCCeEEEEEEEEE---EeCCCCCHHHHHHHHHHHHHHH
Confidence 99999876 3478999999999986 56766666554 3333444467888899999999
Q ss_pred HHHHHHHHhh
Q 028067 192 LKSLADVSEH 201 (214)
Q Consensus 192 L~~L~~~le~ 201 (214)
|++|++.+|+
T Consensus 135 l~~lr~~ae~ 144 (144)
T cd08866 135 LLAIRAEAES 144 (144)
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 6
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.61 E-value=7.6e-14 Score=107.78 Aligned_cols=136 Identities=16% Similarity=0.061 Sum_probs=101.1
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCC-CCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDL-QIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g-~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
+++.++ .|+||+++||++++|+.+++.|.|.+.++++.+++ ++|+...++...+ ..+..++.++++. +.+.|+
T Consensus 2 ~~~~~~--~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~-~~~~~~ 75 (138)
T cd08862 2 KFEATI--VIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPG-HSFTWT 75 (138)
T ss_pred EEEEEE--EEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCC-CEEEEE
Confidence 577888 99999999999999999999999999999876544 6888777765443 3578889999984 668887
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
.... ...+..++.+++.++++|..++...+. .++.......+.+.++..+...|++|+
T Consensus 76 ~~~~--------------------~~~~~~~~~~~~~~~~~t~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk 133 (138)
T cd08862 76 GPAP--------------------GISAVHRHEFEAKPDGGVRVTTSESLS--GPLAFLFGLFVGKKLRALLPEWLEGLK 133 (138)
T ss_pred ecCC--------------------CEEEEEEEEEEEcCCCcEEEEEEEEee--cchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6431 146678999998765676555444322 122222334677888999999999999
Q ss_pred HHHhh
Q 028067 197 DVSEH 201 (214)
Q Consensus 197 ~~le~ 201 (214)
+.+|.
T Consensus 134 ~~~E~ 138 (138)
T cd08862 134 AAAEQ 138 (138)
T ss_pred HHhcC
Confidence 98873
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=7.2e-14 Score=107.03 Aligned_cols=136 Identities=17% Similarity=0.128 Sum_probs=101.2
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe--cCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEE
Q 028067 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve--G~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
+.++ .|+||+++||++++||.+++.|.|.+.+++.. ++.++|+...+... .|.+ ..++++++++|+ ++.+.|.
T Consensus 2 ~~~~--~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~~~~~ 77 (140)
T cd08865 2 EESI--VIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRR-IELTYEITEYEP-GRRVVFR 77 (140)
T ss_pred ceEE--EEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCce-EEEEEEEEEecC-CcEEEEE
Confidence 4567 89999999999999999999999999888753 34568888877654 3332 357899999997 5888998
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
..++ + -.+..++++.|.+ ++|.++|...+.. ..+.......+...+...+...|++|+
T Consensus 78 ~~~~-------------------~-~~~~~~~~~~~~~-~~t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lk 135 (140)
T cd08865 78 GSSG-------------------P-FPYEDTYTFEPVG-GGTRVRYTAELEP-GGFARLLDPLMAPAFRRRARAALENLK 135 (140)
T ss_pred ecCC-------------------C-cceEEEEEEEEcC-CceEEEEEEEEcc-chhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7653 1 2478899999986 5787777765443 222222334566777888889999999
Q ss_pred HHHhh
Q 028067 197 DVSEH 201 (214)
Q Consensus 197 ~~le~ 201 (214)
+.+|.
T Consensus 136 ~~~e~ 140 (140)
T cd08865 136 ALLEA 140 (140)
T ss_pred HHhhC
Confidence 98874
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.58 E-value=1.3e-13 Score=107.88 Aligned_cols=139 Identities=15% Similarity=0.078 Sum_probs=102.1
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEE-EecCCCCC-eEEEEEee-CCCCcceEEEEEEEEeCCCcEEEE
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIG-SVREVNVK-SGLPATTSTERLELLDDEEHIFGM 115 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~-veG~g~VG-svR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y 115 (214)
+++++ +|+||+++||++++||.+++.|+|. ..+. +++.+ .+ .++.+... .|. ..-.+....+|++.+.+.|
T Consensus 1 ~~~s~--~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~-~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSV--TVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDG-GVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEE--EEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcC-CEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEE
Confidence 36788 9999999999999999999999998 4443 45322 22 34434443 333 1222455568887888999
Q ss_pred EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067 116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195 (214)
Q Consensus 116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L 195 (214)
..+++.. ++..+.++.+++|.++++|.+++...+... .|..+....+.+++...+...|++|
T Consensus 75 ~~~~~~~-----------------~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l 136 (142)
T cd08861 75 RQEEPPP-----------------PVASMSGEWRFEPLGGGGTRVTLRHDFTLG-IDSPEAVPWIRRALDRNSRAELAAL 136 (142)
T ss_pred EEeeCCC-----------------ChhhheeEEEEEECCCCcEEEEEEEEEEEC-CCCchhHHHHHHHHccccHHHHHHH
Confidence 9887433 348999999999988677888888776553 2333666778899999999999999
Q ss_pred HHHHhh
Q 028067 196 ADVSEH 201 (214)
Q Consensus 196 ~~~le~ 201 (214)
|+.+|.
T Consensus 137 k~~~E~ 142 (142)
T cd08861 137 RAAAER 142 (142)
T ss_pred HHHhhC
Confidence 999874
No 9
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.51 E-value=2e-12 Score=99.32 Aligned_cols=140 Identities=16% Similarity=0.078 Sum_probs=93.1
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCC-CCcceEEEEEEEEeCCCcEEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSG-LPATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G-~p~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
+++.++ +|+||+++||+++.|+.+++.|.|.+..++... ..+|+...+.+..+ .......++++++|+ .+++.|+
T Consensus 1 ~v~~~~--~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~ 76 (141)
T cd07822 1 TISTEI--EINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWR 76 (141)
T ss_pred CeEEEE--EecCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEE
Confidence 367788 999999999999999999999999887665321 45788877766432 122467889999998 5789999
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
...++.. ......++.|.|.++++|.+++...+.- .+.......+...+...++..++.|+
T Consensus 77 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~T~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~L~ 137 (141)
T cd07822 77 GGLPFPG-----------------LLDGEHSFELEPLGDGGTRFVHRETFSG--LLAPLVLLGLGRDLRAGFEAMNEALK 137 (141)
T ss_pred ecCCCCc-----------------EeeEEEEEEEEEcCCCcEEEEEeeEEEE--EEhHHhhhhhHHHHhHhHHHHHHHHH
Confidence 8665321 1356788999998657776555432221 22222222344455555555566666
Q ss_pred HHHh
Q 028067 197 DVSE 200 (214)
Q Consensus 197 ~~le 200 (214)
+.+|
T Consensus 138 ~~~E 141 (141)
T cd07822 138 ARAE 141 (141)
T ss_pred HhhC
Confidence 5554
No 10
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.51 E-value=9.3e-13 Score=104.01 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=101.7
Q ss_pred CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEE---EE---ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCC
Q 028067 36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRC---IV---QGDLQIGSVREVNVKSGLPATTSTERLELLDDE 109 (214)
Q Consensus 36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~---~v---eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~ 109 (214)
+.+++.++ .|+||+++||+++.|+.++++|+|.+..+ .. .++.++|+...++...+. .....+++++++
T Consensus 1 ~~~~~~s~--~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p- 75 (150)
T cd07818 1 DYRVERSI--VINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP- 75 (150)
T ss_pred CeEEEEEE--EEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-
Confidence 35788899 99999999999999999999999977543 21 234468888777655421 134567888887
Q ss_pred CcEEEEEEEcCcccceeeeccccccccCCCcc-eeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC----CCHHHHHHHH
Q 028067 110 EHIFGMRIVGGDHRLKIIWNFSNFISTSSSKL-QNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG----NTKDETCYFV 184 (214)
Q Consensus 110 ~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~-~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~----~~~~~~~~~v 184 (214)
++.+.|++..++ |+ ..+..++.+.|.+ +||.++|...+. .|.. .....+..++
T Consensus 76 ~~~i~~~~~~~~------------------~~~~~~~~~~~~~~~~-~gT~v~~~~~~~---~~~~~~~~~~~~~~~~~~ 133 (150)
T cd07818 76 NERIEYELRFIK------------------PFEATNDVEFTLEPVG-GGTKVTWGMSGE---LPFPLKLMYLFLDMDKMI 133 (150)
T ss_pred CcEEEEEEEecC------------------CccccceEEEEEEEcC-CceEEEEEEEec---CCchHHHHHHHhhHHHHH
Confidence 578999997532 22 3788999999995 688777776543 2221 2224456778
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028067 185 EALIKCNLKSLADVSEH 201 (214)
Q Consensus 185 ~~~~~~gL~~L~~~le~ 201 (214)
+..+..+|++|++.+|+
T Consensus 134 ~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 134 GKDFEKGLANLKAVLEK 150 (150)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 88899999999999986
No 11
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=1.3e-11 Score=95.28 Aligned_cols=135 Identities=15% Similarity=0.060 Sum_probs=87.5
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ec-CCCCCeEEEEEeeCCCCcceEEEEEEEEeC-CCcEE
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QG-DLQIGSVREVNVKSGLPATTSTERLELLDD-EEHIF 113 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG-~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~-~~~~~ 113 (214)
.+++.++ +|+||+++||++|.|+.++++|+|.|.++++ ++ +++.+....+.+..+. ...+-+.+++. +.+.+
T Consensus 2 ~~v~~s~--~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i 76 (140)
T cd07819 2 IKVSREF--EIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYG---IKDTYALEYTWDGAGSV 76 (140)
T ss_pred ceEEEEE--EEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeee---EEEEEEEEEEEcCCCcE
Confidence 4788999 9999999999999999999999999999986 43 3323333334443221 12222223332 25778
Q ss_pred EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067 114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK 193 (214)
Q Consensus 114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~ 193 (214)
+|+..++. +...+..++++.|.++ ||.++|...+.. ..| .....+..+........++
T Consensus 77 ~~~~~~~~------------------~~~~~~~~~~~~~~~~-~t~vt~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~ 134 (140)
T cd07819 77 SWTLVEGE------------------GNRSQEGSYTLTPKGD-GTRVTFDLTVEL-TVP--LPGFLKRKAEPLVLDEALK 134 (140)
T ss_pred EEEEeccc------------------ceeEEEEEEEEEECCC-CEEEEEEEEEEe-cCC--CCHHHHHHhhhHHHHHHHH
Confidence 99998752 3478899999999874 787777776543 222 2233344444555555555
Q ss_pred HHHHH
Q 028067 194 SLADV 198 (214)
Q Consensus 194 ~L~~~ 198 (214)
+|++.
T Consensus 135 ~l~~~ 139 (140)
T cd07819 135 GLKKR 139 (140)
T ss_pred hHhhh
Confidence 55543
No 12
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=4.6e-12 Score=97.88 Aligned_cols=136 Identities=18% Similarity=0.153 Sum_probs=94.8
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEE
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV 118 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv 118 (214)
++.++ +|+||+++||+++.|+.++++|.|.+.++++.+. .+....+....|.. .....++.+.++ ++.+.|...
T Consensus 2 v~~~i--~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~~~ 75 (139)
T cd07817 2 VEKSI--TVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD--TRSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWRSV 75 (139)
T ss_pred eeEEE--EeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC--CceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEEEC
Confidence 67888 9999999999999999999999999999986432 22333344433543 346667777777 456899876
Q ss_pred cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067 119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDV-PDGNTKDETCYFVEALIKCNLKSLAD 197 (214)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~-p~~~~~~~~~~~v~~~~~~gL~~L~~ 197 (214)
.| ++ .+..++.+.|.++++|.+++...+..... +.......+..+++..++.+|++||+
T Consensus 76 ~~-------------------~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~ 135 (139)
T cd07817 76 EG-------------------AD-PNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQ 135 (139)
T ss_pred CC-------------------CC-CcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 53 12 56688889997756776776665432111 11122245667788888999999999
Q ss_pred HHh
Q 028067 198 VSE 200 (214)
Q Consensus 198 ~le 200 (214)
.+|
T Consensus 136 ~aE 138 (139)
T cd07817 136 LVE 138 (139)
T ss_pred Hhh
Confidence 887
No 13
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.39 E-value=9e-12 Score=97.58 Aligned_cols=134 Identities=13% Similarity=0.139 Sum_probs=96.0
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRI 117 (214)
Q Consensus 40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~i 117 (214)
+.++ +|+||+++||+++.|+.++++|.|.|.++++ ++.+ .+....+.+. .|.. ..+..++. +++ .+++.++.
T Consensus 2 ~~s~--~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSR--LVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVGFGGIR-ESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEE--EcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEeecccc-EEEEEEEE-ecC-CCEEEEEe
Confidence 5677 9999999999999999999999999999986 4332 3444444443 2221 13445554 676 56788888
Q ss_pred EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067 118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 197 (214)
Q Consensus 118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~ 197 (214)
++| +++.+.++.++.|.++++|.+++...+.. +-+.....+..++.......|+++++
T Consensus 76 ~~g-------------------~~~~~~g~w~~~p~~~~~T~v~~~~~~~~---~~~l~~~l~~~~~~~~~~~~l~~f~~ 133 (138)
T cd07813 76 VDG-------------------PFKHLEGEWRFKPLGENACKVEFDLEFEF---KSRLLEALAGLVFDEVAKKMVDAFEK 133 (138)
T ss_pred cCC-------------------ChhhceeEEEEEECCCCCEEEEEEEEEEE---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 34788999999999877887777776543 32233345667778888888888888
Q ss_pred HHhh
Q 028067 198 VSEH 201 (214)
Q Consensus 198 ~le~ 201 (214)
++++
T Consensus 134 ~~~~ 137 (138)
T cd07813 134 RAKQ 137 (138)
T ss_pred HHhh
Confidence 7764
No 14
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.37 E-value=1.7e-11 Score=94.49 Aligned_cols=137 Identities=14% Similarity=0.046 Sum_probs=95.2
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRI 117 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~i 117 (214)
++.++ +|+||+++||+++.|+.+++.|.|.+..+.++-.. .|+.+.+... .|.. ..++.+++++|+ ++.+.|+.
T Consensus 2 i~~s~--~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~-Gg~~~~~~~~~~g~~-~~~~~~i~~~~~-~~~i~~~~ 76 (139)
T cd07814 2 ITIER--EFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRV-GGRWFFFMTGPDGEE-GWVSGEVLEVEP-PRRLVFTW 76 (139)
T ss_pred eEEEE--EecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccC-CceEEEEEECCCCCE-EeccEEEEEEcC-CCeEEEEe
Confidence 67788 99999999999999999999999863333322111 1666654432 2221 357889999998 57899999
Q ss_pred EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067 118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 197 (214)
Q Consensus 118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~ 197 (214)
..++. .+......++++.|.+ ++|.+++...+.....+ .......+..-+...|+.||+
T Consensus 77 ~~~~~----------------~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~lk~ 135 (139)
T cd07814 77 AFSDE----------------TPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA----EQEAREGMEEGWTGTLDRLKA 135 (139)
T ss_pred cccCC----------------CCCCceEEEEEEEECC-CCEEEEEEEEccChHhH----HHHHHhCHhhHHHHHHHHHHH
Confidence 77532 0235788899999988 67877777654331111 234455667788888999999
Q ss_pred HHhh
Q 028067 198 VSEH 201 (214)
Q Consensus 198 ~le~ 201 (214)
.+|+
T Consensus 136 ~~E~ 139 (139)
T cd07814 136 LLEK 139 (139)
T ss_pred HhhC
Confidence 9985
No 15
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.37 E-value=3.5e-11 Score=97.31 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=99.2
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e-cCCCCCeEEEEEe-eCCCCcceEEEEEEEEeCCCcEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNV-KSGLPATTSTERLELLDDEEHIFG 114 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e-G~g~VGsvR~l~~-~~G~p~~~v~ErL~~~D~~~~~~~ 114 (214)
..+.+| +|+|||++||+++.|+.+++.|.|.+..+++ + |+.++|..-.+.. .+|.+..+..| . .+|+..+++.
T Consensus 2 ~~~~si--~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~-~-~~~~~~~~i~ 77 (146)
T cd08860 2 RTDNSI--VIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSE-R-TLDPVNRTVR 77 (146)
T ss_pred cceeEE--EEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEE-E-EecCCCcEEE
Confidence 457889 9999999999999999999999999999986 4 4444553322222 24432222222 2 2677777777
Q ss_pred EE-EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067 115 MR-IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK 193 (214)
Q Consensus 115 Y~-iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~ 193 (214)
++ ... .|+..-..+.+++|.+ +||.+++...+...+ ...+....+.++++..+...|+
T Consensus 78 ~~~~~~-------------------~p~~~m~~~W~f~~~~-~gT~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 136 (146)
T cd08860 78 ARRVET-------------------GPFAYMNIRWEYTEVP-EGTRMRWVQDFEMKP-GAPVDDAAMTDRLNTNTRAQMA 136 (146)
T ss_pred EEEecC-------------------CCcceeeeeEEEEECC-CCEEEEEEEEEEECC-CCccchHHHHHHHhcccHHHHH
Confidence 64 212 2568899999999986 568888888766432 1133344577888999999999
Q ss_pred HHHHHHhhhh
Q 028067 194 SLADVSEHLA 203 (214)
Q Consensus 194 ~L~~~le~~a 203 (214)
+||+.+|+.|
T Consensus 137 ~Lk~~aE~~~ 146 (146)
T cd08860 137 RIKKKIEAAA 146 (146)
T ss_pred HHHHHhhhcC
Confidence 9999999854
No 16
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=6.3e-11 Score=92.75 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=89.6
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeC-CCCcceEEEEEEEEeCCCcEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GLPATTSTERLELLDDEEHIF 113 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~-G~p~~~v~ErL~~~D~~~~~~ 113 (214)
+++.++ +|+||+++||+++.|+.+++.|.|....... . ++..+|....+.... |.+ ..+..++++++| ++.+
T Consensus 1 ~i~~~~--~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~l 76 (144)
T cd07825 1 QVSVSR--TVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEE-NRLI 76 (144)
T ss_pred CeEEEE--EEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECC-CCEE
Confidence 367788 9999999999999999999999985332222 2 335688887766542 333 356778999999 5779
Q ss_pred EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHH--HHHHHHHHHHHHH
Q 028067 114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKD--ETCYFVEALIKCN 191 (214)
Q Consensus 114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~--~~~~~v~~~~~~g 191 (214)
.|+....+ .+......+++++|.++++|.+++...+ ..+.. ... .+......-++..
T Consensus 77 ~~~~~~~~-----------------~~~~~~~~~~~l~~~~~g~T~vt~~~~~---~g~~~-~~~~~~~~~~~~~g~~~~ 135 (144)
T cd07825 77 AWRPGPAG-----------------QEPGGHRWRWELEPIGPGRTRVTETYDW---SAVTD-LKELLGFPAFPEVQLEAS 135 (144)
T ss_pred EEEccCCC-----------------CCCCceeEEEEEEECCCCcEEEEEEEec---cCChh-hhhccccCCCCHHHHHHH
Confidence 99863211 1224566788999987666755555432 21111 000 1112345667788
Q ss_pred HHHHHHHHh
Q 028067 192 LKSLADVSE 200 (214)
Q Consensus 192 L~~L~~~le 200 (214)
|+.|++++|
T Consensus 136 l~~L~~~~~ 144 (144)
T cd07825 136 LDRLATLAE 144 (144)
T ss_pred HHHHHHHhC
Confidence 888888875
No 17
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=1.8e-10 Score=91.51 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=87.7
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCCCCc-ceEEEEEEEEeCCCcEEEE
Q 028067 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLPA-TTSTERLELLDDEEHIFGM 115 (214)
Q Consensus 40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G~p~-~~v~ErL~~~D~~~~~~~Y 115 (214)
+.+. +|+||+++||++++|+.++++|.|.+.++++ + ++.++|+..++......|. ..++-++.+.++ .+.+.|
T Consensus 4 ~~~~--~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~ 80 (146)
T cd07824 4 HTVW--RIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEV 80 (146)
T ss_pred eEEE--EecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEE
Confidence 4556 8999999999999999999999999999975 4 3456777755443222221 245667778877 578888
Q ss_pred EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEee----CCCCCCHHHHHHHHHHHHHHH
Q 028067 116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVD----VPDGNTKDETCYFVEALIKCN 191 (214)
Q Consensus 116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~----~p~~~~~~~~~~~v~~~~~~g 191 (214)
+. +|+ + . ...+++|.|.+ +||.+++.+...... ....+....+....+.++...
T Consensus 81 ~~-~g~--~-----------------~-~~~~~~~~~~~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 138 (146)
T cd07824 81 RA-SGD--L-----------------E-GVGRWTLAPDG-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAG 138 (146)
T ss_pred EE-EEe--e-----------------e-EEEEEEEEEcC-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhH
Confidence 85 432 2 2 36888999976 678777776544311 112333334455555666666
Q ss_pred HHHHHHH
Q 028067 192 LKSLADV 198 (214)
Q Consensus 192 L~~L~~~ 198 (214)
+++||++
T Consensus 139 ~~~L~~~ 145 (146)
T cd07824 139 EKGLARR 145 (146)
T ss_pred HHHHHhh
Confidence 6666654
No 18
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.28 E-value=1.3e-10 Score=90.10 Aligned_cols=142 Identities=16% Similarity=0.107 Sum_probs=92.3
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCC-cceEEEEEEEEeCCCcEEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLP-ATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p-~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
+++.++ +|++|+++||++++|+.++++|.|.+.++++.+++.......+.+ .+.. ....+.++.+.|+. +.+.++
T Consensus 2 ~~~~~~--~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 77 (144)
T cd05018 2 KISGEF--RIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKV-GPVKGTFKGKVELSDLDPP-ESYTIT 77 (144)
T ss_pred eeeeEE--EecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEE-ccEEEEEEEEEEEEecCCC-cEEEEE
Confidence 467788 999999999999999999999999999887543221111111222 1110 01235566677764 667777
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
....+. .....+..++.+.|. ++||.++|..++....+-..+....+..++...+..-+++|+
T Consensus 78 ~~~~~~----------------~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~ 140 (144)
T cd05018 78 GEGKGG----------------AGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLA 140 (144)
T ss_pred EEEcCC----------------CceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHH
Confidence 653211 123689999999998 578888888876542221122445566777777777788888
Q ss_pred HHHh
Q 028067 197 DVSE 200 (214)
Q Consensus 197 ~~le 200 (214)
+.++
T Consensus 141 ~~~~ 144 (144)
T cd05018 141 SKIG 144 (144)
T ss_pred HhhC
Confidence 7653
No 19
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=1.4e-09 Score=80.43 Aligned_cols=133 Identities=22% Similarity=0.221 Sum_probs=89.0
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe--cCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ--GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI 117 (214)
Q Consensus 40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve--G~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i 117 (214)
+.++ .|+||+++||+++.|+.+++.|.|.+.++++. +....|....+....+. ......++..+++ +..++|+.
T Consensus 2 ~~~~--~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASI--EIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEE--EeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEE
Confidence 3456 89999999999999999999999999999864 33456666665553121 1357888999988 67789998
Q ss_pred EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCC---CHHHHHHHHHHHHHHHHHH
Q 028067 118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGN---TKDETCYFVEALIKCNLKS 194 (214)
Q Consensus 118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~---~~~~~~~~v~~~~~~gL~~ 194 (214)
..++. + ..+..++.+.+.++++|.+++...+ .++... ....+.+++...+...+++
T Consensus 78 ~~~~~-----------------~-~~~~~~~~~~~~~~~~t~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T cd07812 78 TGGGG-----------------G-VDGTGEWRLEPEGDGGTRVTYTVEY---DPPGPLLKVFALLLAGALKRELAALLRA 136 (141)
T ss_pred ecCCC-----------------C-cceeEEEEEEECCCCcEEEEEEEEE---ecCCcchhhhhHHHHHHHHhHHHHHHHH
Confidence 77532 1 4788999999987447655555433 332222 2334445555555555555
Q ss_pred HHH
Q 028067 195 LAD 197 (214)
Q Consensus 195 L~~ 197 (214)
|++
T Consensus 137 ~~~ 139 (141)
T cd07812 137 LKA 139 (141)
T ss_pred HHh
Confidence 544
No 20
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.10 E-value=2.4e-09 Score=85.11 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=88.5
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceE--EEEEEEEeCCCcEEEEEE
Q 028067 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTS--TERLELLDDEEHIFGMRI 117 (214)
Q Consensus 40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v--~ErL~~~D~~~~~~~Y~i 117 (214)
+.++ +|+|||++||++++|+.+++.|.|.+.+.+..|++... -.+++.-|.-...+ +=++.+++++.+.+.+..
T Consensus 2 ~~~~--~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 2 ENEF--TVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYK--GTVKVKLGPISASFKGTARLLEDDEAARRAVLEA 77 (146)
T ss_pred CceE--EecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEE--EEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEE
Confidence 4577 89999999999999999999999999888754432221 22333322100011 225666774578888775
Q ss_pred EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067 118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 197 (214)
Q Consensus 118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~ 197 (214)
...+... ..--....++++.|.+ ++|.++|..+...-.+-.......+++..+..+..-+++|++
T Consensus 78 ~g~~~~~--------------~g~~~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~ 142 (146)
T cd07823 78 TGKDARG--------------QGTAEATVTLRLSPAG-GGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEA 142 (146)
T ss_pred EEecCCC--------------cceEEEEEEEEEEecC-CcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 4411111 0001467788888844 778777777654322222334445667777777777888888
Q ss_pred HHh
Q 028067 198 VSE 200 (214)
Q Consensus 198 ~le 200 (214)
++|
T Consensus 143 ~~e 145 (146)
T cd07823 143 RLA 145 (146)
T ss_pred Hhc
Confidence 876
No 21
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.08 E-value=5.8e-09 Score=82.02 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=77.6
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe----cCCCCCeEEEEEeeC-CCCcceEEEEEEEEeCCCcEEE
Q 028067 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ----GDLQIGSVREVNVKS-GLPATTSTERLELLDDEEHIFG 114 (214)
Q Consensus 40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve----G~g~VGsvR~l~~~~-G~p~~~v~ErL~~~D~~~~~~~ 114 (214)
+.++ +|+||+++||++++|+.+++.|.|.+.++++. |...+|+.-.+++.. |.+ ...+-+++++++ ++.|.
T Consensus 2 ~~s~--~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~-~~w~~~it~~~p-~~~f~ 77 (137)
T cd07820 2 ERST--VIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIP-QRWTTEITEVEP-PRRFV 77 (137)
T ss_pred eEEE--EcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCc-eEEEEEEEEEcC-CCeEE
Confidence 5678 99999999999999999999999999888763 223467776666653 322 245677888887 57799
Q ss_pred EEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEE
Q 028067 115 MRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIES 166 (214)
Q Consensus 115 Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s 166 (214)
+..+.| |+..+..+..+.|.+ +||.+|....+
T Consensus 78 ~~~~~G-------------------~~~~w~h~~~f~~~~-~gT~vt~~v~~ 109 (137)
T cd07820 78 DEQVSG-------------------PFRSWRHTHRFEAIG-GGTLMTDRVEY 109 (137)
T ss_pred EEeccC-------------------CchhCEEEEEEEECC-CceEEEEEEEE
Confidence 987765 346777888898877 47777777654
No 22
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.97 E-value=2e-08 Score=77.34 Aligned_cols=126 Identities=19% Similarity=0.262 Sum_probs=81.7
Q ss_pred ecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEEEEcCcccc
Q 028067 47 IKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMRIVGGDHRL 124 (214)
Q Consensus 47 I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~~ 124 (214)
|+||+++||++++|+.+++.|.|.+.++++ +.++. +..-.+.+. .+.+ .....++....+. . +.+..++|
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~g---- 72 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIK-RSWTSRVTEDPPE-R-IRFEQISG---- 72 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTC-EEEEEEEEEECTT-T-EEEESSET----
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEE-EEEEEEEEEEEee-e-eeeeecCC----
Confidence 689999999999999999999999999985 43221 222233443 2322 3456677655554 4 66666664
Q ss_pred eeeeccccccccCCCcceeeEEEEEEEeecC--CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 125 KIIWNFSNFISTSSSKLQNYSSIVTVHPEVI--DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 125 ~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~--~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
|++.+.++.++.|.++ +|+.+.+..... ++++.......+..+++......|++|+
T Consensus 73 ---------------~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 73 ---------------PFKSFEGSWRFEPLGGNEGGTRTRVTYDYE-VDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp ---------------TEEEEEEEEEEEEETTECCEEEEEEEEEEE-EETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CchhcEEEEEEEECCCCcCCCEEEEEEEEE-EecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 5599999999999873 155444444333 3555555555666666777666666653
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.94 E-value=4e-08 Score=80.77 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=90.5
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e-cCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEE
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q-GDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIF 113 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e-G~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~ 113 (214)
.++.+++ .|++|++++|+++.|..+++.|.|.|.++++ + .++ +....+++. .|. ....+.|.. +++. +++
T Consensus 15 ~~i~~~~--~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~--~~~a~l~v~~~g~-~~~f~srv~-~~~~-~~I 87 (158)
T PRK10724 15 PQISRTA--LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG--QMTAAVDVSKAGI-SKTFTTRNQ-LTSN-QSI 87 (158)
T ss_pred CeEEEEE--EecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC--EEEEEEEEeeCCc-cEEEEEEEE-ecCC-CEE
Confidence 4678888 9999999999999999999999999999986 3 222 223334443 332 134555555 4553 578
Q ss_pred EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067 114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK 193 (214)
Q Consensus 114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~ 193 (214)
.+..++| |++.+.+..+++|.++++|.+++...+... .. ....++..+++...+
T Consensus 88 ~~~~~~G-------------------pF~~l~g~W~f~p~~~~~t~V~~~l~fef~---s~----l~~~~~~~~~~~~~~ 141 (158)
T PRK10724 88 LMQLVDG-------------------PFKKLIGGWKFTPLSQEACRIEFHLDFEFT---NK----LIELAFGRVFKELAS 141 (158)
T ss_pred EEEecCC-------------------ChhhccceEEEEECCCCCEEEEEEEEEEEc---hH----HHHHHHHHHHHHHHH
Confidence 9988886 458999999999988677888888776542 22 222334445555555
Q ss_pred HHHHHHhhhh
Q 028067 194 SLADVSEHLA 203 (214)
Q Consensus 194 ~L~~~le~~a 203 (214)
.|-+.+++.|
T Consensus 142 ~mv~AF~~Ra 151 (158)
T PRK10724 142 NMVQAFTVRA 151 (158)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 24
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.85 E-value=1.5e-07 Score=72.46 Aligned_cols=136 Identities=16% Similarity=0.047 Sum_probs=84.0
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRI 117 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~i 117 (214)
|++.++ .|+||+++||+++.|+..++.|.+.. ..+++..+|..-.+...+.. ...+.=+++++++ ++.+.|+.
T Consensus 1 ~~~~~~--~i~ap~e~Vw~~~td~~~~~~W~~~~---~~~~~~~~G~~~~~~~~~~~-~~~~~~~v~~~~~-~~~l~~~~ 73 (136)
T cd08893 1 KFVYVT--YIRATPEKVWQALTDPEFTRQYWGGT---TVESDWKVGSAFEYRRGDDG-TVDVEGEVLESDP-PRRLVHTW 73 (136)
T ss_pred CeEEEE--EecCCHHHHHHHHcCchhhhheeccc---ccccCCcCCCeEEEEeCCCc-ccccceEEEEecC-CCeEEEEE
Confidence 456677 99999999999999999999998752 12344446655555444311 1235567888887 57777776
Q ss_pred EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067 118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 197 (214)
Q Consensus 118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~ 197 (214)
..+.... ..+......++.++|.+ +++.+++.... .+.+. ...+.+..-+...|+.|++
T Consensus 74 ~~~~~~~-------------~~~~~~~~v~~~l~~~~-~~t~l~~~~~~----~~~~~---~~~~~~~~gw~~~l~~Lk~ 132 (136)
T cd08893 74 RAVWDPE-------------MAAEPPSRVTFEIEPVG-DVVKLTVTHDG----FPPGS---PTLEGVSGGWPAILSSLKT 132 (136)
T ss_pred ecCCCcc-------------cCCCCCEEEEEEEEecC-CcEEEEEEecC----CCCch---hHHHhhhcCHHHHHHHHHH
Confidence 5432110 01124677788888876 45533333321 22221 2334456667778999999
Q ss_pred HHhh
Q 028067 198 VSEH 201 (214)
Q Consensus 198 ~le~ 201 (214)
.+|+
T Consensus 133 ~~e~ 136 (136)
T cd08893 133 LLET 136 (136)
T ss_pred HhcC
Confidence 8874
No 25
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.82 E-value=1.4e-07 Score=73.47 Aligned_cols=143 Identities=16% Similarity=0.111 Sum_probs=85.5
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEe-cCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQ-GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~ve-G~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
.++.++ +|+||+++||++++|+..++.|.+... +... |.+..| .+...++. .....-+++++++ .+.+.|+
T Consensus 2 ~i~~~i--~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~~-~~~~~~~i~~~~p-~~~l~~~ 73 (145)
T cd08898 2 RIERTI--LIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGYE-HGVFPVTVVEVDP-PRRFSFR 73 (145)
T ss_pred eeEEEE--EecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCCC-ccceEEEEEEeCC-CcEEEEE
Confidence 578899 999999999999999999999998543 2221 222122 23333321 0135568888998 6888998
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
......... .+..+......++++.+.+ +||.++++-..+. ..++.. .+.....+..-....|+.|+
T Consensus 74 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~-~~~~~~-~~~~~~~~~~gw~~~l~~L~ 140 (145)
T cd08898 74 WHPPAIDPG----------EDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFD-ALPAER-RAEAYRMNEGGWDEQLENLV 140 (145)
T ss_pred ecCCCcccc----------cccCCCCceEEEEEEEecC-CcEEEEEEEcCCC-CCChHH-HHHHHHhhhhhHHHHHHHHH
Confidence 754320000 0000123456889999976 6776666543211 111111 11233455667778888888
Q ss_pred HHHhh
Q 028067 197 DVSEH 201 (214)
Q Consensus 197 ~~le~ 201 (214)
++||.
T Consensus 141 ~~le~ 145 (145)
T cd08898 141 AYVEA 145 (145)
T ss_pred HHhcC
Confidence 88863
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.81 E-value=7.2e-08 Score=78.02 Aligned_cols=129 Identities=17% Similarity=0.135 Sum_probs=88.0
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
..+..++ +|+||+++||+++.|+.+++.|.+.. ..+..+|...++.+....+ .....+++++|+ ++.+.|+
T Consensus 11 ~~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~~-----~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p-~~~l~~~ 81 (157)
T cd08899 11 ATLRFER--LLPAPIEDVWAALTDPERLARWFAPG-----TGDLRVGGRVEFVMDDEEG-PNATGTILACEP-PRLLAFT 81 (157)
T ss_pred eEEEEEE--ecCCCHHHHHHHHcCHHHHHhhcCCC-----CCCcccCceEEEEecCCCC-CccceEEEEEcC-CcEEEEE
Confidence 4566666 89999999999999999999999832 2333466666665543111 346778889998 5788988
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
...++ .....+++|++.+ +||.+++..... +.. .....+..-....|+.|+
T Consensus 82 ~~~~~--------------------~~~~~~~~l~~~~-~gT~v~~~~~~~----~~~----~~~~~~~~GW~~~L~~Lk 132 (157)
T cd08899 82 WGEGG--------------------GESEVRFELAPEG-DGTRLTLTHRLL----DER----FGAGAVGAGWHLCLDVLE 132 (157)
T ss_pred ecCCC--------------------CCceEEEEEEEcC-CCEEEEEEEecc----Cch----hhhhhhcccHHHHHHHHH
Confidence 75432 2345688888866 677555554322 222 233455666778899999
Q ss_pred HHHhhhh
Q 028067 197 DVSEHLA 203 (214)
Q Consensus 197 ~~le~~a 203 (214)
+++|+..
T Consensus 133 ~~~e~~~ 139 (157)
T cd08899 133 AALEGGP 139 (157)
T ss_pred HHHcCCC
Confidence 9999854
No 27
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=7.8e-07 Score=70.15 Aligned_cols=132 Identities=12% Similarity=0.026 Sum_probs=81.0
Q ss_pred EeeeecCCHHHHHHHHhcCCCCCccCc-c-ceEEEEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcEEEEEEE
Q 028067 43 LVKHIKAPVHLVWSLVRRFDQPQKYKP-F-VSRCIVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRIV 118 (214)
Q Consensus 43 I~~~I~APae~VW~vi~Df~~l~~W~P-~-V~s~~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~~~Y~iv 118 (214)
+++.|+||+++||.++.|...+..|.+ . ......+.+..+|..-.+.+. +|.. ....=++++++| ++++.|+..
T Consensus 4 ~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p-~~~l~~t~~ 81 (139)
T cd08894 4 TTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVFLEIEP-PERIVYDHG 81 (139)
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEEEec
Confidence 345889999999999999999999873 2 222222333345555444342 3431 123457889998 588899874
Q ss_pred cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028067 119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADV 198 (214)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~ 198 (214)
.++ .....+++++|.+ +||.++++.. +. +.....+.+...+.+-....|+.|++.
T Consensus 82 ~~~--------------------~~~~v~~~~~~~~-~gT~ltl~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~ 136 (139)
T cd08894 82 SGP--------------------PRFRLTVTFEEQG-GKTRLTWRQV---FP-TAAERCEKIKFGAVEGNEQTLDRLAAY 136 (139)
T ss_pred cCC--------------------CcEEEEEEEEECC-CCEEEEEEEE---cC-CHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 320 2356788999876 7776666542 21 111112223344566677888888888
Q ss_pred Hhh
Q 028067 199 SEH 201 (214)
Q Consensus 199 le~ 201 (214)
|++
T Consensus 137 l~~ 139 (139)
T cd08894 137 LAR 139 (139)
T ss_pred HhC
Confidence 764
No 28
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.53 E-value=7e-06 Score=64.88 Aligned_cols=133 Identities=18% Similarity=0.075 Sum_probs=79.1
Q ss_pred EeeeecCCHHHHHHHHhcCCCCCccCcc-----ceEEEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCCcEEEE
Q 028067 43 LVKHIKAPVHLVWSLVRRFDQPQKYKPF-----VSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFGM 115 (214)
Q Consensus 43 I~~~I~APae~VW~vi~Df~~l~~W~P~-----V~s~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~~~~~Y 115 (214)
+++.++||+++||+++.|...+..|... +..+.+ +..+|..-.+.+ .+|.. ....=+++++|+ .+++.|
T Consensus 4 i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~--d~~~Gg~~~~~~~~~~g~~-~~~~g~~~~~~p-~~~l~~ 79 (143)
T cd08900 4 LERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEF--DFRVGGREVSRGGPKGGPE-ITVEARYHDIVP-DERIVY 79 (143)
T ss_pred EEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEE--ecCCCCEEEEEEECCCCCE-EeeeEEEEEecC-CceEEE
Confidence 4457899999999999999999999842 233333 333454433333 24431 234557888998 577888
Q ss_pred EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067 116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195 (214)
Q Consensus 116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L 195 (214)
+....... .|......++.+.+.+ +||.+++...... .+.. +.. ..+..=....|+.|
T Consensus 80 t~~~~~~~---------------~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~--~~~~---~~~-~~~~~GW~~~l~~L 137 (143)
T cd08900 80 TYTMHIGG---------------TLLSASLATVEFAPEG-GGTRLTLTEQGAF--LDGD---DDP-AGREQGTAALLDNL 137 (143)
T ss_pred EEeeccCC---------------ccccceEEEEEEEECC-CCEEEEEEEEEec--cccc---chh-hhHHHHHHHHHHHH
Confidence 76321110 1122345788898876 6775555543321 1111 112 33345566778999
Q ss_pred HHHHhh
Q 028067 196 ADVSEH 201 (214)
Q Consensus 196 ~~~le~ 201 (214)
++.|++
T Consensus 138 ~~~l~~ 143 (143)
T cd08900 138 AAELER 143 (143)
T ss_pred HHHHhC
Confidence 988874
No 29
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.51 E-value=6.1e-06 Score=65.75 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=79.4
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCc-c-------ceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCC
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKP-F-------VSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEE 110 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P-~-------V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~ 110 (214)
++.++ .|+||+++||++++| .+..|.+ . ...|+++- .+|....+...+|. ....=++.+++| .
T Consensus 2 ~~~~~--~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~--~~GG~~~~~~~~g~--~~~~g~v~~v~p-~ 72 (149)
T cd08891 2 VRKSV--TVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEP--RAGGRWYEIGEDGT--ECEWGTVLAWEP-P 72 (149)
T ss_pred eEEEE--EecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcc--cCCcEEEEecCCCc--EeceEEEEEEcC-C
Confidence 56677 999999999999999 4778864 2 13444431 23333333333453 223457888998 5
Q ss_pred cEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 028067 111 HIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC 190 (214)
Q Consensus 111 ~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~ 190 (214)
+++.|+-.-+.. . .+.+-..-..++.++|.++++|.++++-..... .+++..+......+..=...
T Consensus 73 ~~l~~tw~~~~~-~------------~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~-~~~~~~~~~~~~~~~~GW~~ 138 (149)
T cd08891 73 SRLVFTWQINAD-W------------RPDPDKASEVEVRFEAVGAEGTRVELEHRGFER-HGDGWEAAAMRMGYDGGWPL 138 (149)
T ss_pred CEEEEEeccCCC-c------------CcCCCCceEEEEEEEECCCCCeEEEEEEecccc-cCcchhhHHHHhcccCcHHH
Confidence 778887642110 0 001101236788888875467766666543321 11111222233334555666
Q ss_pred HHHHHHHHHhh
Q 028067 191 NLKSLADVSEH 201 (214)
Q Consensus 191 gL~~L~~~le~ 201 (214)
.|+.|++.|||
T Consensus 139 ~L~~L~~~l~~ 149 (149)
T cd08891 139 LLERYAAAAEK 149 (149)
T ss_pred HHHHHHHHhcC
Confidence 78999998875
No 30
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.50 E-value=1.3e-06 Score=71.48 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=68.4
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcc--eEEEEEEEEeCCCcEEEEE
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPAT--TSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~--~v~ErL~~~D~~~~~~~Y~ 116 (214)
++.+. .|++|+++||+.|.|+..+..-.|.|++++.+|+.-.+ .+.+.-|.-.. .-+=++..+|+..++++-+
T Consensus 3 ~~G~f--~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~e~~~---~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~ 77 (146)
T COG3427 3 YEGTF--RVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGDEYTA---KVKLKIGPLKGTFSGRVRFVNVDEPPRSITIN 77 (146)
T ss_pred ccceE--EecCCHHHHHHHhcCHHHHHhhcCCcceeeecCCeEEE---EEEEeecceeEEEEEEEEEccccCCCcEEEEE
Confidence 45566 89999999999999999999999999999887752111 12222221001 2334555656667766655
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEE
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIE 165 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~ 165 (214)
.-+|.. --.-+..+.+.|+|.+ ++++++|...
T Consensus 78 g~G~~~----------------~g~~~~~~~v~l~~~g-~gt~v~w~~~ 109 (146)
T COG3427 78 GSGGGA----------------AGFADGTVDVQLEPSG-EGTRVNWFAD 109 (146)
T ss_pred eecccc----------------cceeeeeeEEEEEEcC-CCcEEEEEEE
Confidence 544211 1236888999999988 4465555543
No 31
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.48 E-value=6.7e-06 Score=64.30 Aligned_cols=126 Identities=14% Similarity=0.150 Sum_probs=77.9
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceE---EEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCCcEE
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSR---CIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIF 113 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s---~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~~~~ 113 (214)
+.-++ .|+||+++||++++|...+..|.+.... ...+.+..+|..-.+.+ .+|.....+.=++.++++ .+++
T Consensus 2 ~~~~~--~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~~l 78 (133)
T cd08897 2 ITVET--TVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HKLI 78 (133)
T ss_pred EEEEE--EeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECC-CCEE
Confidence 44555 8999999999999999999999643211 11233444565544443 233211134567788998 5889
Q ss_pred EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Q 028067 114 GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLK 193 (214)
Q Consensus 114 ~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~ 193 (214)
.|+..+ ....++.+.|.+ +||.++++ .+..+.. ....+..=....|+
T Consensus 79 ~~~~~~-----------------------~~~v~~~l~~~~-~gT~l~l~-----~~~~~~~----~~~~~~~GW~~~l~ 125 (133)
T cd08897 79 EYTMED-----------------------GREVEVEFTEEG-DGTKVVET-----FDAENEN----PVEMQRQGWQAILD 125 (133)
T ss_pred EEEcCC-----------------------CCEEEEEEEECC-CCEEEEEE-----ECCCCCC----cHHHHHHHHHHHHH
Confidence 998632 124688999876 77755543 2221111 12233445577888
Q ss_pred HHHHHHh
Q 028067 194 SLADVSE 200 (214)
Q Consensus 194 ~L~~~le 200 (214)
.|+++||
T Consensus 126 ~L~~~le 132 (133)
T cd08897 126 NFKKYVE 132 (133)
T ss_pred HHHHHhh
Confidence 9988886
No 32
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.47 E-value=7.5e-06 Score=65.04 Aligned_cols=135 Identities=9% Similarity=-0.041 Sum_probs=80.8
Q ss_pred EEeeeecCCHHHHHHHHhcCCCCCccCccc-eEE-EEecCCCCCeEEEEEee--CCCCcceEEEEEEEEeCCCcEEEEEE
Q 028067 42 SLVKHIKAPVHLVWSLVRRFDQPQKYKPFV-SRC-IVQGDLQIGSVREVNVK--SGLPATTSTERLELLDDEEHIFGMRI 117 (214)
Q Consensus 42 sI~~~I~APae~VW~vi~Df~~l~~W~P~V-~s~-~veG~g~VGsvR~l~~~--~G~p~~~v~ErL~~~D~~~~~~~Y~i 117 (214)
+++++++||+++||+++.|...+..|...- ..+ ..+.+..+|..-.+.+. +|.. ..+.=++++++| .+++.|+.
T Consensus 3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~~~ei~p-~~~l~~t~ 80 (142)
T cd07826 3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGVYHEVTP-PERIVQTE 80 (142)
T ss_pred EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEEEe
Confidence 345588999999999999999999998432 111 12344445655555443 3321 235567888998 57777764
Q ss_pred EcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028067 118 VGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLAD 197 (214)
Q Consensus 118 v~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~ 197 (214)
.-.+. |-.....++.+.+.+ +||..+++.. +. .....++.....+..=....|+.|++
T Consensus 81 ~~~~~-----------------~~~~s~v~~~l~~~~-~gT~l~l~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~ 138 (142)
T cd07826 81 EFEGL-----------------PDGVALETVTFTELG-GRTRLTATSR---YP-SKEARDGVLASGMEEGMEESYDRLDE 138 (142)
T ss_pred EecCC-----------------CCCceEEEEEEEECC-CCEEEEEEEE---eC-CHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 32110 113567788999876 7776665422 21 11111112334556667777888887
Q ss_pred HHh
Q 028067 198 VSE 200 (214)
Q Consensus 198 ~le 200 (214)
.|+
T Consensus 139 ~l~ 141 (142)
T cd07826 139 LLA 141 (142)
T ss_pred HHh
Confidence 764
No 33
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.47 E-value=9.5e-06 Score=64.43 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=77.1
Q ss_pred EeeeecCCHHHHHHHHhcCCCCCccCc-c---ceEEEEecCCCCCeEEEEEe--eCCCCcceEEEEEEEEeCCCcEEEEE
Q 028067 43 LVKHIKAPVHLVWSLVRRFDQPQKYKP-F---VSRCIVQGDLQIGSVREVNV--KSGLPATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 43 I~~~I~APae~VW~vi~Df~~l~~W~P-~---V~s~~veG~g~VGsvR~l~~--~~G~p~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
+++.|+||+++||+++.+...+..|.+ . +..+.+ +..+|..-++.+ .+|.. ....=++.++|| .+++.|+
T Consensus 4 i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~--d~~~GG~~~~~~~~~~g~~-~~~~g~v~~i~p-~~~l~~t 79 (146)
T cd08896 4 LSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL--DLRPGGAFRTVMRGPDGEE-FPNPGCFLEVVP-GERLVFT 79 (146)
T ss_pred EEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEE--EeecCcEEEEEEECCCCCE-ecceEEEEEEeC-CCEEEEE
Confidence 345889999999999999999999974 2 223333 323444444443 23431 234567889999 5778887
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
-.-.+... +...| .-..++++++.+ +||.++++... .+....+.....-+..=....|+.|+
T Consensus 80 ~~~~~~~~-----------~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~----~~~~~~~~~~~~~~~~GW~~~l~~L~ 141 (146)
T cd08896 80 DALTPGWR-----------PAEKP--FMTAIITFEDEG-GGTRYTARARH----WTEADRKQHEEMGFHDGWGTAADQLA 141 (146)
T ss_pred EeecCCcC-----------CCCCC--cEEEEEEEEecC-CcEEEEEEEEe----CCHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 42211100 00111 145688899876 77766654321 11111111111123455777888888
Q ss_pred HHHh
Q 028067 197 DVSE 200 (214)
Q Consensus 197 ~~le 200 (214)
++++
T Consensus 142 ~~l~ 145 (146)
T cd08896 142 ALAE 145 (146)
T ss_pred HHHh
Confidence 8876
No 34
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.39 E-value=6.4e-06 Score=65.64 Aligned_cols=134 Identities=18% Similarity=0.122 Sum_probs=75.8
Q ss_pred eecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCC-Cc-ceEEEEEEEEeCCCcEEEEEEEcCccc
Q 028067 46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGL-PA-TTSTERLELLDDEEHIFGMRIVGGDHR 123 (214)
Q Consensus 46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~-p~-~~v~ErL~~~D~~~~~~~Y~iv~g~~~ 123 (214)
+|++|+++||++|.|+..+..-.|.+.+.+..| +.- .-.++++-|. .. -..+=++.+.|+.++. ..++...+..
T Consensus 4 ~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~--~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~-~~~~~g~g~~ 79 (140)
T PF06240_consen 4 EVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEY--KGKVKVKVGPIKGTFDGEVRITEIDPPESY-TLEFEGRGRG 79 (140)
T ss_dssp EECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEE--EEEEEEESCCCEEEEEEEEEEEEEETTTEE-EEEEEEEECT
T ss_pred EecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEE--EEEEEEEeccEEEEEEEEEEEEEcCCCcce-EeeeeccCCc
Confidence 899999999999999999999999999998655 310 0112332231 00 1244567778886554 3555443332
Q ss_pred ceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028067 124 LKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 199 (214)
Q Consensus 124 ~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~l 199 (214)
.. .+..+.+++...+++++.++|..+..............+....+.+++.-.+.|++.+
T Consensus 80 ~~----------------~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 80 GG----------------SSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp CC----------------EEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc----------------eEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 3445566666555445666666554432222223334555566666666666666554
No 35
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.36 E-value=4.2e-05 Score=60.69 Aligned_cols=131 Identities=21% Similarity=0.110 Sum_probs=76.8
Q ss_pred EeeeecCCHHHHHHHHhcCCCCCccCc-cceEEE-EecCCCCCeEEEEEe--eC-------CCCcceEEEEEEEEeCCCc
Q 028067 43 LVKHIKAPVHLVWSLVRRFDQPQKYKP-FVSRCI-VQGDLQIGSVREVNV--KS-------GLPATTSTERLELLDDEEH 111 (214)
Q Consensus 43 I~~~I~APae~VW~vi~Df~~l~~W~P-~V~s~~-veG~g~VGsvR~l~~--~~-------G~p~~~v~ErL~~~D~~~~ 111 (214)
+++.|+||+++||+++.|...+..|.+ .--.+. .+.+..+|..-.+.+ .+ |. .....=+++++++ ++
T Consensus 4 ~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~-~~~~~g~v~~v~p-~~ 81 (146)
T cd08895 4 LHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGN-TDVFGGRFLELVP-NE 81 (146)
T ss_pred EEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCc-EeeeEEEEEEEcC-CC
Confidence 345889999999999999999999985 211221 223333444433322 23 21 1134456888998 57
Q ss_pred EEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 028067 112 IFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191 (214)
Q Consensus 112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~g 191 (214)
++.|+..-.+.. .| .....++.+.+.+ ++|.+++... ..++.. ....+..=....
T Consensus 82 ~i~~~~~~~~~~---------------~~-~~~~v~~~~~~~~-~~T~lt~~~~----~~~~~~----~~~~~~~GW~~~ 136 (146)
T cd08895 82 RIVYTDVFDDPS---------------LS-GEMTMTWTLSPVS-GGTDVTIVQS----GIPDGI----PPEDCELGWQES 136 (146)
T ss_pred EEEEEEEecCCC---------------CC-ceEEEEEEEEecC-CCEEEEEEEe----CCCchh----hhhHHHHHHHHH
Confidence 788875322111 11 2447888888876 6775555543 123321 123445556667
Q ss_pred HHHHHHHHh
Q 028067 192 LKSLADVSE 200 (214)
Q Consensus 192 L~~L~~~le 200 (214)
|+.|+++++
T Consensus 137 l~~L~~~le 145 (146)
T cd08895 137 LANLAALVE 145 (146)
T ss_pred HHHHHHHhc
Confidence 888888776
No 36
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.34 E-value=1.6e-05 Score=62.65 Aligned_cols=129 Identities=11% Similarity=-0.036 Sum_probs=77.8
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEE
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV 118 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv 118 (214)
+..++ .|+||+++||+++++...+..|.+.-.+.++ .+|....+.+....+ .+.=++.+++| .+.+.|+..
T Consensus 2 ~~~~~--~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~----~~Gg~~~~~~~~~~~--~~~g~~~~~~p-~~~l~~~w~ 72 (136)
T cd08901 2 AKTAM--LIRRPVAEVFEAFVDPEITTKFWFTGSSGRL----EEGKTVTWDWEMYGA--SVPVNVLEIEP-NKRIVIEWG 72 (136)
T ss_pred eeEEE--EecCCHHHHHHHhcCHHHhccccccCCCccc----cCCCEEEEEEEccCC--ceEEEEEEEcC-CCEEEEEec
Confidence 56778 9999999999999999999998543222222 244433343332211 23446788988 578888764
Q ss_pred cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHH--HHHHHHHHHHHHHHH
Q 028067 119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETC--YFVEALIKCNLKSLA 196 (214)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~--~~v~~~~~~gL~~L~ 196 (214)
.++ ..-..++++.+.++++|.++++.. ..|.... +... ..+..=....|+.|+
T Consensus 73 ~~~--------------------~~s~v~~~l~~~~~ggT~ltl~~~----~~~~~~~-~~~~~~~~~~~GW~~~L~~L~ 127 (136)
T cd08901 73 DPG--------------------EPTTVEWTFEELDDGRTFVTITES----GFPGTDD-EGLKQALGSTEGWTLVLAGLK 127 (136)
T ss_pred CCC--------------------CCEEEEEEEEECCCCcEEEEEEEC----CCCCCcH-HHHHHHhcCCCCHHHHHHHHH
Confidence 321 124468888887646676555532 2233221 1111 122344566788999
Q ss_pred HHHhh
Q 028067 197 DVSEH 201 (214)
Q Consensus 197 ~~le~ 201 (214)
+.+|+
T Consensus 128 ~~le~ 132 (136)
T cd08901 128 AYLEH 132 (136)
T ss_pred HHHhc
Confidence 88876
No 37
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.31 E-value=2.3e-05 Score=59.37 Aligned_cols=124 Identities=16% Similarity=0.056 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEcCcccceee
Q 028067 48 KAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLKII 127 (214)
Q Consensus 48 ~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~~~ 127 (214)
+||+++||+++.+...+..|.+ .... +.+..+|....+.-.+|.. ....=++++++| ++.+.|+..-++..
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~--~~~~~~Gg~~~~~~~~g~~-~~~~~~v~~~~p-~~~i~~~~~~~~~~---- 71 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEA--EMDFRPGGSFRFMDPDGGE-FGFDGTVLEVEP-PERIVFTWRMPDDP---- 71 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEE--EEECSTTEEEEEEETTSEE-EEEEEEEEEEET-TTEEEEEEEEETSS----
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcc--eeeeecCCEEEEEecCCCC-ceeeEEEEEEeC-CEEEEEEEEccCCC----
Confidence 6999999999999999999921 1222 2233456554442234431 234445889998 57788886543221
Q ss_pred eccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 028067 128 WNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200 (214)
Q Consensus 128 ~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~le 200 (214)
+-.....++.|++ .+++|.++++... + +.. +.....+..-....|++|++.||
T Consensus 72 ------------~~~~~~v~~~~~~-~~~~T~l~~~~~~--~--~~~---~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 72 ------------DGPESRVTFEFEE-EGGGTRLTLTHSG--F--PDD---DEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp ------------SCEEEEEEEEEEE-ETTEEEEEEEEEE--E--HSH---HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCceEEEEEEEE-cCCcEEEEEEEEc--C--Ccc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence 1146678888888 4477766655521 1 111 11212156677778899998886
No 38
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.27 E-value=0.00015 Score=59.97 Aligned_cols=148 Identities=9% Similarity=0.031 Sum_probs=80.8
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCCC---cceEEEEEEEEeCCCcE
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLP---ATTSTERLELLDDEEHI 112 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p---~~~v~ErL~~~D~~~~~ 112 (214)
..+..+. .|++|+++||+++.|.+..++|.|.+.++++ +-.+.--.+-.+.+.-..| ...+..+-...+.++..
T Consensus 41 ~~~k~~~--~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 41 KEFKAVA--EVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEE--EEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 5677777 8999999999999999999999999999975 4221111222233322211 11121111122221233
Q ss_pred EEEEEEcCcc--cceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 028067 113 FGMRIVGGDH--RLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC 190 (214)
Q Consensus 113 ~~Y~iv~g~~--~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~ 190 (214)
+...+...++ +.. .+| .-...+.+.+.++|.++++|.+++... +++......-.+..++......
T Consensus 119 ~~i~~~s~~~~~P~~-----~~~-----vR~~~~~~~~~i~~~~~~~t~vt~~~~---~dp~g~iP~~lv~~~~~~~~~~ 185 (195)
T cd08876 119 VTITLEAAPEALPEQ-----KGY-----VRIKTVEGQWTFTPLGNGKTRVTYQAY---ADPGGSIPGWLANAFAKDAPYN 185 (195)
T ss_pred EEEEeecCCccCCCC-----CCe-----EEceeceeeEEEEECCCCeEEEEEEEE---eCCCCCCCHHHHHHHHHHHHHH
Confidence 3333333222 100 000 014677788899998766665555553 3443333344455555566666
Q ss_pred HHHHHHHHH
Q 028067 191 NLKSLADVS 199 (214)
Q Consensus 191 gL~~L~~~l 199 (214)
.|++|++++
T Consensus 186 ~l~~l~~~~ 194 (195)
T cd08876 186 TLENLRKQL 194 (195)
T ss_pred HHHHHHHhh
Confidence 666666654
No 39
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.27 E-value=1.6e-05 Score=67.32 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=97.9
Q ss_pred CCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcE
Q 028067 33 DVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHI 112 (214)
Q Consensus 33 ~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~ 112 (214)
...+..++.+| +|++|+|+||.+.+|+.++|.|+-.+.|+++--+.. |.-.++.+.|... +..-+|+..- .+.+
T Consensus 66 ~~~~i~v~~~V--~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr--SrW~~~ap~g~~v-~Wea~it~d~-~~e~ 139 (217)
T COG5637 66 MAKPIEVEVQV--TIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR--SRWKANAPLGLEV-EWEAEITKDI-PGER 139 (217)
T ss_pred ccCceEEEEEE--EeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc--cceeEcCCCCceE-EEeehhhccC-CCcE
Confidence 56788888888 999999999999999999999999999998633321 2222333334321 3456676554 4788
Q ss_pred EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHH----HHHHHH
Q 028067 113 FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCY----FVEALI 188 (214)
Q Consensus 113 ~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~----~v~~~~ 188 (214)
+.|+-++|-- -.-++.+++.+..++.+.+.+++.| .+|.+.......+ ..+..+
T Consensus 140 I~W~Sl~Ga~-------------------v~NsG~VrF~~~pg~~t~V~v~lsY---~~Pgg~~~a~va~~fgeepeqqI 197 (217)
T COG5637 140 IQWESLPGAR-------------------VENSGAVRFYDAPGDSTEVKVTLSY---RPPGGLLGAVVAKLFGEEPEQQI 197 (217)
T ss_pred EeeecCCCCc-------------------CCCCccEEeeeCCCCceEEEEEEEe---cCCccHHHHHHHHHhccchHHHH
Confidence 9999988722 1234567788877555677777754 3565543333222 234566
Q ss_pred HHHHHHHHHHHhhhhhcCC
Q 028067 189 KCNLKSLADVSEHLAVQDR 207 (214)
Q Consensus 189 ~~gL~~L~~~le~~a~~~~ 207 (214)
..-|+..+...|..-.+.|
T Consensus 198 ~~DL~RFk~~~e~~q~s~r 216 (217)
T COG5637 198 QDDLERFKEYQENGQPSGR 216 (217)
T ss_pred HHHHHHHHHHHHccCcccC
Confidence 6777777877777555554
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.09 E-value=0.00018 Score=56.08 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=71.6
Q ss_pred eeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEcCccc
Q 028067 44 VKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHR 123 (214)
Q Consensus 44 ~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~ 123 (214)
++.|+||+++||+++.+...+..|.....+. + ..+|..-. +.+|. +.=++.+++| ++++.|+-.-.+.+
T Consensus 5 ~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~--d--~~~GG~~~--~~~g~----~~g~~~~i~p-~~~l~~~w~~~~~~ 73 (126)
T cd08892 5 TETFQVPAEELYEALTDEERVQAFTRSPAKV--D--AKVGGKFS--LFGGN----ITGEFVELVP-GKKIVQKWRFKSWP 73 (126)
T ss_pred EEEECCCHHHHHHHHCCHHHHHhhcCCCcee--c--CCCCCEEE--EeCCc----eEEEEEEEcC-CCEEEEEEEcCCCC
Confidence 4488999999999999999999997532222 2 22333322 23452 3446778888 57777765321111
Q ss_pred ceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 028067 124 LKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVSE 200 (214)
Q Consensus 124 ~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~le 200 (214)
. -..-..++.+++.+ ++|.++++-.. .+.+ .....-++.-...|++|++.|+
T Consensus 74 ~----------------~~~s~v~~~l~~~~-~gT~ltl~~~g----~~~~----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 74 E----------------GHYSTVTLTFTEKD-DETELKLTQTG----VPAG----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred C----------------CCcEEEEEEEEECC-CCEEEEEEEEC----CCCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence 0 02345788888874 67755555432 2332 1222334444557888888875
No 41
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.04 E-value=7.5e-05 Score=60.99 Aligned_cols=138 Identities=14% Similarity=0.174 Sum_probs=95.9
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee-CCCCcceEEEEEEEEeCCCcEEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK-SGLPATTSTERLELLDDEEHIFGMR 116 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~-~G~p~~~v~ErL~~~D~~~~~~~Y~ 116 (214)
+++++. .+..+|+++.+++.|...+|+..|.|..+.+-......-+-.+++. .|. ..+..-|++ +++..+.+.-.
T Consensus 3 ~~~~s~--lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i-~e~F~Trv~-~~~~~~~I~~~ 78 (146)
T COG2867 3 QIERTA--LVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGI-RETFTTRVT-LKPTARSIDMK 78 (146)
T ss_pred eeEeee--eccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhe-eeeeeeeee-ecCchhhhhhh
Confidence 566777 8999999999999999999999999998876322223344445544 232 134555555 44545677777
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
.++| |++-..++.++.|.++++|.+.+.+++.+.. ......+..+++..-..+-
T Consensus 79 l~~G-------------------PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s-------~ll~~~~g~~f~~~a~~mv 132 (146)
T COG2867 79 LIDG-------------------PFKYLKGGWQFTPLSEDACKVEFFLDFEFKS-------RLLGALIGPVFKRLASKMV 132 (146)
T ss_pred hhcC-------------------ChhhhcCceEEEECCCCceEEEEEEEeeehh-------HHHHHHHHHHHHHHHHHHH
Confidence 7776 5688899999999877899899998876532 1344555666666666666
Q ss_pred HHHhhhhhc
Q 028067 197 DVSEHLAVQ 205 (214)
Q Consensus 197 ~~le~~a~~ 205 (214)
+.+++.|-+
T Consensus 133 ~aF~kRA~~ 141 (146)
T COG2867 133 EAFEKRAKE 141 (146)
T ss_pred HHHHHHHHH
Confidence 667666543
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00015 Score=58.73 Aligned_cols=102 Identities=11% Similarity=0.002 Sum_probs=63.7
Q ss_pred CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067 36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM 115 (214)
Q Consensus 36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y 115 (214)
+..++-+. .|++|+++||++++|...+.+|.. -.-++.+...+.+....+...+|. .....-++.+++| ++++.|
T Consensus 7 ~~~~~~er--~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~-~~~~~~~~~~v~p-~~rIv~ 81 (149)
T COG3832 7 DRTLEIER--LIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGP-VHSFEGEYLEVVP-PERIVF 81 (149)
T ss_pred CceEEEEE--eecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCC-eeecceEEEEEcC-CcEEEE
Confidence 44455555 899999999999999999999986 221333222112333445554552 2245677888998 576677
Q ss_pred EEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCC
Q 028067 116 RIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDG 157 (214)
Q Consensus 116 ~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~g 157 (214)
+-.-.+.. .|...-..++++.+..+++
T Consensus 82 tw~~~~~~---------------~~~~~~~v~~~l~~~~~g~ 108 (149)
T COG3832 82 TWDFDEDG---------------EPFLKSLVTITLTPEDDGG 108 (149)
T ss_pred EeccCCCC---------------CcccCceEEEEEEEecCCC
Confidence 66443321 1224567788888876554
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.24 E-value=0.0047 Score=48.78 Aligned_cols=92 Identities=8% Similarity=-0.001 Sum_probs=54.7
Q ss_pred ecCCHHHHHHHHhcCCCCCccC-ccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEcCcccce
Q 028067 47 IKAPVHLVWSLVRRFDQPQKYK-PFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVGGDHRLK 125 (214)
Q Consensus 47 I~APae~VW~vi~Df~~l~~W~-P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~ 125 (214)
++||+++||+++.|...+..|. +. .++++ ..+|..-.+. .+. +.=+.+++|+. +++.|+.--.+.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~--~~~~d--~~~GG~f~~~--~~~----~~G~~~ev~pp-~rlv~tw~~~~~--- 66 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGS--PAEMD--AKVGGKFSLF--NGS----VEGEFTELEKP-KKIVQKWRFRDW--- 66 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCC--Ccccc--CCcCCEEEEe--cCc----eEEEEEEEcCC-CEEEEEEecCCC---
Confidence 5899999999999999988884 32 23332 2344443322 332 44567789884 666665422110
Q ss_pred eeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEE
Q 028067 126 IIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIE 165 (214)
Q Consensus 126 ~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~ 165 (214)
.+ + ..-..|+.+++.++++|.++++..
T Consensus 67 -----------~~-~-~~s~vt~~~~~~~~g~T~lt~~~~ 93 (132)
T PTZ00220 67 -----------EE-D-VYSKVTIEFRAVEEDHTELKLTQT 93 (132)
T ss_pred -----------CC-C-CceEEEEEEEeCCCCcEEEEEEEe
Confidence 00 0 123578888886556776666554
No 44
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.11 E-value=0.56 Score=39.90 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=80.6
Q ss_pred ceEEEEEeeeecCCHHHHH-HHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeC-CC---CcceEEEEEEEEeC
Q 028067 37 HQCSSSLVKHIKAPVHLVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GL---PATTSTERLELLDD 108 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW-~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~-G~---p~~~v~ErL~~~D~ 108 (214)
.....+. .+++|+++++ .++-|....++|.+.+.++++ + ++.. =-++.+..+. +. ++-.+.-+....++
T Consensus 49 k~~k~e~--~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~-~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~ 125 (209)
T cd08905 49 KVFRLEV--VVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDT-LITHEVAAETAGNVVGPRDFVSVRCAKRRG 125 (209)
T ss_pred cEEEEEE--EecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCc-eEEEEEeccCCCCccCccceEEEEEEEEcC
Confidence 3344444 7899999999 777799999999999999874 3 2221 1123322221 11 11223333333333
Q ss_pred CCcEE-EEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecC--CCcceEEEEEEEEeeCCCCCCHHHHHHHHH
Q 028067 109 EEHIF-GMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI--DGRPGTLVIESFVVDVPDGNTKDETCYFVE 185 (214)
Q Consensus 109 ~~~~~-~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~--~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~ 185 (214)
.+..+ ..++.-...+. ..+-.-..++.+-+.+.|.++ +.|.++|... .|+--....-.+-.++.
T Consensus 126 ~~~~~~~~s~~~~~~P~----------~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~---~DpkG~iP~~lvN~~~~ 192 (209)
T cd08905 126 STCVLAGMATHFGLMPE----------QKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLS---IDLKGWLPKSIINQVLS 192 (209)
T ss_pred CcEEEEEEeecCCCCCC----------CCCeEEEEeeccEEEEEECCCCCCceEEEEEEe---ecCCCCCCHHHHHHHhH
Confidence 33332 22221111110 001122466778888999764 4454444433 35433344456667777
Q ss_pred HHHHHHHHHHHHHHhh
Q 028067 186 ALIKCNLKSLADVSEH 201 (214)
Q Consensus 186 ~~~~~gL~~L~~~le~ 201 (214)
..--..|.+|++.++.
T Consensus 193 ~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 193 QTQVDFANHLRQRMAS 208 (209)
T ss_pred HhHHHHHHHHHHHHhc
Confidence 7777888999988763
No 45
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=95.86 E-value=0.27 Score=40.28 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=38.7
Q ss_pred CHHHHHHHHhc-CCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEE
Q 028067 50 PVHLVWSLVRR-FDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGM 115 (214)
Q Consensus 50 Pae~VW~vi~D-f~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y 115 (214)
..++||.-|-. -.+...+.|.+.+|++-.+....-.|.++|+ + ..++|++....+ +.+.|
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg-~---~~v~E~v~~~~~--~~V~f 79 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFG-G---ATVRERVTLYPP--ERVDF 79 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEET-T---EEEEEEEEEETT--TEEEE
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEEC-C---cEEEEEEEEeCC--cEEEE
Confidence 46789998864 5556789999999986322224567999993 3 379999986544 56777
No 46
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.82 E-value=1 Score=38.52 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=29.3
Q ss_pred eecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067 46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76 (214)
Q Consensus 46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~v 76 (214)
+|++|+++||+++.|....++|.+.+.++++
T Consensus 52 ~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~v 82 (205)
T cd08874 52 VIKAPLATVWKAVKDPRTRFLYDTMIKTARI 82 (205)
T ss_pred EEcCCHHHHHHHHhCcchhhhhHHhhhheee
Confidence 6799999999999999999999999999975
No 47
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.72 E-value=0.5 Score=40.00 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=82.6
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEE-EecCCCCCeEEEEEeeCCCCc-ceEEEEEE------EEeCCC
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIGSVREVNVKSGLPA-TTSTERLE------LLDDEE 110 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p~-~~v~ErL~------~~D~~~ 110 (214)
..--+...|++|++.+.+++.|....+.|.|.+.+++ ++..+..-.+-.+.+ ..|+ ..-||-+. .++. +
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v~~~~~~~~~~~-~ 122 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV--DLPWPLSNREAVFRGFGVDRLEE-N 122 (215)
T ss_pred EEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE--eCceEecceEEEEEEEEEeeecc-C
Confidence 3333344789999999999999999999999998875 432211112222222 2343 11233332 2323 3
Q ss_pred cEEEEEEEcCcccceeeeccccc-ccc---CCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC-CCHHHHHHHHH
Q 028067 111 HIFGMRIVGGDHRLKIIWNFSNF-IST---SSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG-NTKDETCYFVE 185 (214)
Q Consensus 111 ~~~~Y~iv~g~~~~~~~~~~~~~-~~~---~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~-~~~~~~~~~v~ 185 (214)
..+...+..-++..+.- .+.+. +.. .-.-...+.+-+.++|.+++.|.++++.. .||--. .....+-.+..
T Consensus 123 ~~i~i~~~si~~~~~~~-~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~---~DP~g~~IP~~liN~~~k 198 (215)
T cd08877 123 GQIVILLKSIDDDPEFL-KLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVAN---VDPKMSLVPKSLLNFVAR 198 (215)
T ss_pred CCEEEEEecCCCCcccc-cccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEE---cCCCcccCCHHHHHHHHH
Confidence 33322221111100000 00000 000 11124667788889998866665555443 343223 34556666777
Q ss_pred HHHHHHHHHHHHHHhh
Q 028067 186 ALIKCNLKSLADVSEH 201 (214)
Q Consensus 186 ~~~~~gL~~L~~~le~ 201 (214)
.+....+.+|++.+++
T Consensus 199 ~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 199 KFAGLLFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777888888887764
No 48
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=95.57 E-value=1.3 Score=37.80 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=76.8
Q ss_pred ceEEEEEeeeecCCHHHHH-HHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeC-CCC---cceEEEEEEEEeC
Q 028067 37 HQCSSSLVKHIKAPVHLVW-SLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKS-GLP---ATTSTERLELLDD 108 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW-~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~-G~p---~~~v~ErL~~~D~ 108 (214)
..+.... .+++|+++++ +++.|....++|.+.+.++++ + +++. =-++.++... +.| .-.+.-|-..-+.
T Consensus 49 ~~fk~~~--~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~ 125 (209)
T cd08906 49 KTFILKA--FMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNT-LVSYDVAAGAAGGVVSPRDFVNVRRIERRR 125 (209)
T ss_pred cEEEEEE--EEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCc-EEEEEEccccccCCCCCCceEEEEEEEecC
Confidence 3344444 6799999998 689999999999999999974 3 2221 1112233221 112 1123223333333
Q ss_pred CCcE-EEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEe--ecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHH
Q 028067 109 EEHI-FGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHP--EVIDGRPGTLVIESFVVDVPDGNTKDETCYFVE 185 (214)
Q Consensus 109 ~~~~-~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p--~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~ 185 (214)
.+.. +..++.....|.. ++|+ -..++.+-+-+.| .+++.|.+||... .|+--....-.+..++.
T Consensus 126 ~~~i~~~~sv~~~~~P~~-----~~~V-----R~~~~~~G~~i~~~~~~~~~t~vt~~~~---~Dp~G~lP~~lvN~~~~ 192 (209)
T cd08906 126 DRYVSAGISTTHSHKPPL-----SKYV-----RGENGPGGFVVLKSASNPSVCTFIWILN---TDLKGRLPRYLIHQSLA 192 (209)
T ss_pred CcEEEEEEEEecCCCCCC-----CCeE-----EEeeeccEEEEEECCCCCCceEEEEEEe---cCCCCCCCHHHHHHHHH
Confidence 3322 2333322211110 0000 0222333344555 3445565565554 24333344445666677
Q ss_pred HHHHHHHHHHHHHHhh
Q 028067 186 ALIKCNLKSLADVSEH 201 (214)
Q Consensus 186 ~~~~~gL~~L~~~le~ 201 (214)
...-.-|++|++.++.
T Consensus 193 ~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 193 ATMFEFASHLRQRIRD 208 (209)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777778889888764
No 49
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=1.1 Score=36.68 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=66.3
Q ss_pred eecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEee---CCCC-cceEEEEEEE--EeCCCcEEEEEEEc
Q 028067 46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVK---SGLP-ATTSTERLEL--LDDEEHIFGMRIVG 119 (214)
Q Consensus 46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~---~G~p-~~~v~ErL~~--~D~~~~~~~Y~iv~ 119 (214)
.|+||.|.||+.-+..+++..-.|-.+.+.-+|+ .++..-.++++ -|.| ..+.+-|.++ +|+ ..+|+=.++.
T Consensus 9 ~i~aP~E~VWafhsrpd~lq~LTppw~VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~~~FtDv~i~ 86 (153)
T COG4276 9 TITAPHEMVWAFHSRPDALQRLTPPWIVVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-GSRFTDVCIT 86 (153)
T ss_pred EecCCHHHHhhhhcCccHHHhcCCCcEEeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC-cceeeeeeec
Confidence 5899999999999999998665554442211452 23333333332 2332 1356778887 888 5778888877
Q ss_pred CcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCC
Q 028067 120 GDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDG 174 (214)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~ 174 (214)
| |+|.-+..-+=++.+.+ ++ |+...+-.+++|.+
T Consensus 87 g-----------------Pfp~~~WrHtH~F~~eg-g~---TvliD~Vsye~p~g 120 (153)
T COG4276 87 G-----------------PFPALNWRHTHNFVDEG-GG---TVLIDSVSYELPAG 120 (153)
T ss_pred C-----------------CccceeeEEEeeeecCC-Cc---EEEEeeEEeeccCc
Confidence 5 34445677777777765 44 56666655566766
No 50
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.16 E-value=0.9 Score=36.93 Aligned_cols=132 Identities=22% Similarity=0.182 Sum_probs=68.2
Q ss_pred EEEeeeecCCHHHHHHHHhcCCCC----CccC---ccceEEEEecCCCCCeEEE-EEee-CCCCc---------ceEEEE
Q 028067 41 SSLVKHIKAPVHLVWSLVRRFDQP----QKYK---PFVSRCIVQGDLQIGSVRE-VNVK-SGLPA---------TTSTER 102 (214)
Q Consensus 41 ~sI~~~I~APae~VW~vi~Df~~l----~~W~---P~V~s~~veG~g~VGsvR~-l~~~-~G~p~---------~~v~Er 102 (214)
.++ ++++|+|+||+++.|-.-+ .... ..+.+++.+|++ + .++. -.+. +..|. ..+ ++
T Consensus 3 ~~~--~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~-~v~~~~~v~~~~lP~~~~k~v~~~l~v-~~ 77 (159)
T PF10698_consen 3 HSV--EYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-V-RVTVRQTVPADKLPSAARKFVGGDLRV-TR 77 (159)
T ss_pred EEE--EcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-E-EEEEEEecChhhCCHHHHHhcCCCeEE-EE
Confidence 345 8899999999999874322 1111 123444444443 1 1111 1111 23331 122 23
Q ss_pred EEEE---eCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHH
Q 028067 103 LELL---DDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDE 179 (214)
Q Consensus 103 L~~~---D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~ 179 (214)
-..+ ++..+..+|++--.+.| -...+++.|.|.+ ++|..++...-.. .+|- .-..
T Consensus 78 ~e~w~~~~~g~~~g~~~~~~~G~P------------------~~~~G~~~L~~~~-~gt~~~~~g~v~v-~VPl--vGgk 135 (159)
T PF10698_consen 78 TETWTPLDDGRRTGTFTVSIPGAP------------------VSISGTMRLRPDG-GGTRLTVEGEVKV-KVPL--VGGK 135 (159)
T ss_pred EEEEecCCCCeEEEEEEEEecCce------------------EEEEEEEEEecCC-CCEEEEEEEEEEE-EEcc--ccHH
Confidence 3344 55566666666432222 3789999999955 6775555544322 3342 2224
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028067 180 TCYFVEALIKCNLKSLADVS 199 (214)
Q Consensus 180 ~~~~v~~~~~~gL~~L~~~l 199 (214)
+++++...+...|+..++..
T Consensus 136 iE~~v~~~~~~~~~~e~~~~ 155 (159)
T PF10698_consen 136 IEKAVAENLRKLLEAEQEFT 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666555544
No 51
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.10 E-value=3.2 Score=35.18 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.1
Q ss_pred eecCCHHHHHHHHhcCCCC--CccCccceEEEE
Q 028067 46 HIKAPVHLVWSLVRRFDQP--QKYKPFVSRCIV 76 (214)
Q Consensus 46 ~I~APae~VW~vi~Df~~l--~~W~P~V~s~~v 76 (214)
.++++++++++++.|..+. ++|.+.+.++++
T Consensus 53 ~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~v 85 (208)
T cd08903 53 IVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEV 85 (208)
T ss_pred EecCCHHHHHHHHHhccchhhhhhhhccccEEE
Confidence 6799999999999887654 799999999974
No 52
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=94.00 E-value=2.7 Score=36.98 Aligned_cols=31 Identities=6% Similarity=0.238 Sum_probs=29.4
Q ss_pred eecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067 46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76 (214)
Q Consensus 46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~v 76 (214)
.+++|+++++++|.|....++|.+.+.+|++
T Consensus 88 ~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~v 118 (240)
T cd08913 88 VVHVDAAQAFLLLSDLRRRPEWDKHYRSCEL 118 (240)
T ss_pred EEcCCHHHHHHHHhChhhhhhhHhhccEEEE
Confidence 6799999999999999999999999999985
No 53
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=93.63 E-value=1.4 Score=38.40 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=80.7
Q ss_pred CCCcchhHHHhhhhcCCCCCceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCC-CCCeEEEEEeeCCCC
Q 028067 17 GFGKIEEDYIKRHHKHDVHDHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDL-QIGSVREVNVKSGLP 95 (214)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g-~VGsvR~l~~~~G~p 95 (214)
++++-|.-|-.|- .|+.+++++++++++...++.+.|.|+++.|...+ .-+..-.+.+ |.|
T Consensus 62 ~~~~r~k~Y~err----------------ligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeV--GFk 123 (227)
T KOG3177|consen 62 PFTNREKAYSERR----------------LIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEV--GFK 123 (227)
T ss_pred CcchHHHHHHHHh----------------hhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEe--cCc
Confidence 5556666665554 68999999999999999999999999999874221 2334444554 543
Q ss_pred c--ceEEEEEEEEeCCCcEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeec--CCCcceEEEEEEEEeeC
Q 028067 96 A--TTSTERLELLDDEEHIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEV--IDGRPGTLVIESFVVDV 171 (214)
Q Consensus 96 ~--~~v~ErL~~~D~~~~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~--~~gs~~t~~~~s~~~~~ 171 (214)
. .....+++..++ .+ .|++.-. +++ +..-....++.|.. .+.|.+.+.+.+++...
T Consensus 124 ~l~E~y~S~Vt~~~p-~l--~kt~~~d-~rL----------------F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~ 183 (227)
T KOG3177|consen 124 PLDERYTSNVTCVKP-HL--TKTVCAD-GRL----------------FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSL 183 (227)
T ss_pred ccchhheeeeEEecc-cc--eEEeecc-ccH----------------HHhhhheeeeccCCCCCCeEEEEEEEEEEehhH
Confidence 2 234455665555 33 4444332 233 13445556777765 24444444454443222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028067 172 PDGNTKDETCYFVEALIKCNLKSLADVSEH 201 (214)
Q Consensus 172 p~~~~~~~~~~~v~~~~~~gL~~L~~~le~ 201 (214)
-- ...+.-|...+.+...++..+.+.+
T Consensus 184 lh---s~va~~Ffd~V~~~~v~AF~~ra~~ 210 (227)
T KOG3177|consen 184 LH---SQVATIFFDEVVKQMVNAFEQRARK 210 (227)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223334444444445555554444
No 54
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=93.45 E-value=5.1 Score=35.25 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=63.5
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCC---CCcceEEEEEEE--EeCCC
Q 028067 39 CSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSG---LPATTSTERLEL--LDDEE 110 (214)
Q Consensus 39 ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G---~p~~~v~ErL~~--~D~~~ 110 (214)
+.... .+++|++++++++.|...-++|.+.+.++++ + ++. .+ +-+..+..- .|.-.+.-+-.. .+.++
T Consensus 79 fk~e~--~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d-~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 79 FCVEL--KVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGED-DG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEE--EecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCC-cE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 44444 6799999999999999999999999999975 4 332 23 222333211 111112211111 23322
Q ss_pred -cEEEEEEEc-CcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEE
Q 028067 111 -HIFGMRIVG-GDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIES 166 (214)
Q Consensus 111 -~~~~Y~iv~-g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s 166 (214)
..+..+-+. ...|.. .+-.-...+.+-+.+.|.++++|.+++..+.
T Consensus 155 ~~~I~~~SV~h~~~Pp~----------kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~ 202 (235)
T cd08873 155 PYKVAFRSVTLPRVPQT----------PGYSRTEVACAGFVIRQDCGTCTEVSYYNET 202 (235)
T ss_pred eEEEEEeeeecccCCCC----------CCeEEEEEEeeeEEEEECCCCcEEEEEEEEc
Confidence 222332232 211110 0112257788999999988677766666553
No 55
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=92.89 E-value=5.3 Score=33.90 Aligned_cols=143 Identities=11% Similarity=-0.002 Sum_probs=74.0
Q ss_pred ee-cCCHHHHHHHHhcCCCCCccCccceEEE-EecCCCCCeEEEEEeeCCCC---cceEEEEEEEEeCCCcEE-EEEEEc
Q 028067 46 HI-KAPVHLVWSLVRRFDQPQKYKPFVSRCI-VQGDLQIGSVREVNVKSGLP---ATTSTERLELLDDEEHIF-GMRIVG 119 (214)
Q Consensus 46 ~I-~APae~VW~vi~Df~~l~~W~P~V~s~~-veG~g~VGsvR~l~~~~G~p---~~~v~ErL~~~D~~~~~~-~Y~iv~ 119 (214)
++ ++|++++++++.|....+.|.+.+..++ ++-.+.--.+.+..+....| +-.+.-|....++....+ ..++..
T Consensus 54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~ 133 (222)
T cd08871 54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKH 133 (222)
T ss_pred EeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccC
Confidence 44 7999999999999888899999998886 44211112233333322222 112222222222211111 222211
Q ss_pred CcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028067 120 GDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSLADVS 199 (214)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L~~~l 199 (214)
.+.+. ..+-.-...+.+-+.++|.++++|.+++... .|+--....-.+..++.......|++|++.+
T Consensus 134 ~~~P~----------~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~---~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~ 200 (222)
T cd08871 134 KKYPP----------RKGFVRAISLLTGYLIRPTGPKGCTLTYVTQ---NDPKGSLPKWVVNKATTKLAPKVMKKLHKAA 200 (222)
T ss_pred CCCCC----------CCCeEEeEEEccEEEEEECCCCCEEEEEEEe---cCCCCCcCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11111 0000112456777888998766665555543 2432222233445555666667788888887
Q ss_pred hh
Q 028067 200 EH 201 (214)
Q Consensus 200 e~ 201 (214)
++
T Consensus 201 ~~ 202 (222)
T cd08871 201 LK 202 (222)
T ss_pred HH
Confidence 76
No 56
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=92.49 E-value=5.7 Score=33.33 Aligned_cols=141 Identities=15% Similarity=0.033 Sum_probs=73.1
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCCCCc---ceEEEEEEEEeCCCc--
Q 028067 40 SSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLPA---TTSTERLELLDDEEH-- 111 (214)
Q Consensus 40 e~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G~p~---~~v~ErL~~~D~~~~-- 111 (214)
..+. +|++++++|++.+-|.. +.|.+.+.++++ + ++. =.+-+..+..-.|. -.+.-|....+.++.
T Consensus 47 K~~~--~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~--~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 47 RAST--EVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDED--TEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEE--EeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCC--cEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 5555 78999999999998753 789999999974 4 222 11222222221121 122222323233332
Q ss_pred EEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 028067 112 IFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCN 191 (214)
Q Consensus 112 ~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~g 191 (214)
.+..+-++ ++. .+..+-.-...+.+-+.++|.++++|.+|+.... | |-|.-..-+......+....
T Consensus 121 ~i~~~Sv~--~~~--------~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~---D-p~G~iP~wl~N~~~~~~~~~ 186 (197)
T cd08869 121 VLVETSVE--HTE--------PVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRV---D-LRGRSPEWYNKVYGHLCARE 186 (197)
T ss_pred EEEEECCc--CCC--------CCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEE---C-CCCCCCceeecchHhHHHHH
Confidence 22222221 100 0000011134566778899987677767766653 3 22222222234445677778
Q ss_pred HHHHHHHHh
Q 028067 192 LKSLADVSE 200 (214)
Q Consensus 192 L~~L~~~le 200 (214)
|++|++-+.
T Consensus 187 ~~~l~~~~~ 195 (197)
T cd08869 187 LLRIRDSFR 195 (197)
T ss_pred HHHHHhhcc
Confidence 888887654
No 57
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=90.24 E-value=10 Score=31.85 Aligned_cols=31 Identities=19% Similarity=0.531 Sum_probs=27.0
Q ss_pred eecCCHHHHHH-HHhcCCCCCccCccceEEEE
Q 028067 46 HIKAPVHLVWS-LVRRFDQPQKYKPFVSRCIV 76 (214)
Q Consensus 46 ~I~APae~VW~-vi~Df~~l~~W~P~V~s~~v 76 (214)
.+++|+++|.. ++.|....+.|.+.+..+++
T Consensus 55 ~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~ 86 (208)
T cd08868 55 VLDCPAEFLYNELVLNVESLPSWNPTVLECKI 86 (208)
T ss_pred EEcCCHHHHHHHHHcCccccceecCcccceEE
Confidence 78999999975 66799999999999998864
No 58
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=90.16 E-value=9 Score=31.23 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=45.3
Q ss_pred CHHHHHHHHh-cCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEEc
Q 028067 50 PVHLVWSLVR-RFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIVG 119 (214)
Q Consensus 50 Pae~VW~vi~-Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv~ 119 (214)
..+++|.-|- .-.....+.|.+.+|++ +..+ ---.|.++++.. .++|++.. ++ ...+.|.+..
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~~----~v~e~vt~-~~-~~~v~f~~~~ 82 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGPA----KIRETVTL-EP-PSRVHFLQAD 82 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECCc----eEEEEEEe-cC-CcEEEEEecC
Confidence 5689999775 56666789999999986 4222 134599999664 69999974 44 3667887755
No 59
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=89.48 E-value=11 Score=31.05 Aligned_cols=144 Identities=11% Similarity=-0.061 Sum_probs=73.1
Q ss_pred eecCCHHH-HHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCC-Cc---ceEEE-EEEEEeCCCcEEEEEEE
Q 028067 46 HIKAPVHL-VWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGL-PA---TTSTE-RLELLDDEEHIFGMRIV 118 (214)
Q Consensus 46 ~I~APae~-VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~-p~---~~v~E-rL~~~D~~~~~~~Y~iv 118 (214)
.+++++++ +=+++.|....+.|.+.+.++++ +-...-..+.+.....-. |. ..+-- +....++....+..+-+
T Consensus 52 ~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv 131 (206)
T smart00234 52 VVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSV 131 (206)
T ss_pred EEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEEC
Confidence 67888887 55788899999999999998864 421111244443332221 21 11111 12222222233333222
Q ss_pred cCcccceeeecccccc-ccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEee-CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028067 119 GGDHRLKIIWNFSNFI-STSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVD-VPDGNTKDETCYFVEALIKCNLKSLA 196 (214)
Q Consensus 119 ~g~~~~~~~~~~~~~~-~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~-~p~~~~~~~~~~~v~~~~~~gL~~L~ 196 (214)
+ ++. +- ...-.-...+.+-+.++|.+++.|.+++....-... .|.-. +..++.......++.|+
T Consensus 132 ~--~~~--------~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~l----vn~~~~~~~~~~~~~~~ 197 (206)
T smart00234 132 T--HPT--------SPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWL----VRSLIKSGLAEFAKTWV 197 (206)
T ss_pred C--CCC--------CCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCcccee----ehhhhhhhHHHHHHHHH
Confidence 2 111 00 001112356788889999876666666655432211 24433 33444555556677777
Q ss_pred HHHhhhh
Q 028067 197 DVSEHLA 203 (214)
Q Consensus 197 ~~le~~a 203 (214)
+.+.+..
T Consensus 198 ~~~~~~~ 204 (206)
T smart00234 198 ATLQKHC 204 (206)
T ss_pred HHHHHHh
Confidence 7666543
No 60
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=89.12 E-value=9.9 Score=30.20 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=32.6
Q ss_pred CceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067 36 DHQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76 (214)
Q Consensus 36 ~~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v 76 (214)
...+.... ++++|+++||+++.|....+.|.+.+.++++
T Consensus 38 ~~~~k~~~--~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~v 76 (193)
T cd00177 38 LKLLKAEG--VIPASPEQVFELLMDIDLRKKWDKNFEEFEV 76 (193)
T ss_pred ceeEEEEE--EECCCHHHHHHHHhCCchhhchhhcceEEEE
Confidence 34455555 8899999999999999988999999998874
No 61
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=88.17 E-value=15 Score=31.07 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=77.5
Q ss_pred ee-cCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCe-EEEEEeeCCCCc---ceEEEEEEEEeCCCcEE---EEE
Q 028067 46 HI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGS-VREVNVKSGLPA---TTSTERLELLDDEEHIF---GMR 116 (214)
Q Consensus 46 ~I-~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGs-vR~l~~~~G~p~---~~v~ErL~~~D~~~~~~---~Y~ 116 (214)
++ ++|++.+.+++.|...-++|.+.+.++++ +-....+. +-.+.+.-..|. -.+--|-...|+++..+ .++
T Consensus 52 ~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~s 131 (207)
T cd08911 52 SFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKA 131 (207)
T ss_pred EEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEec
Confidence 45 99999999999999999999999998874 43221222 222222222221 23434444556554432 222
Q ss_pred EEcCcccceeeeccccccccCCCcceeeEEEEEEEeec---CCCcceEEEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHH
Q 028067 117 IVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEV---IDGRPGTLVIESFVVDVPDGN-TKDETCYFVEALIKCNL 192 (214)
Q Consensus 117 iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~---~~gs~~t~~~~s~~~~~p~~~-~~~~~~~~v~~~~~~gL 192 (214)
+.....+. ..+-.-+..|.+.+.+.|.+ ++|+. .+..++ .+ |.|. ..-.+..+.....-.-|
T Consensus 132 v~hp~~P~----------~~g~VRv~~~~~~~~i~p~~~~~~~~~~--~~~~~~-~d-PgG~IP~~lvN~~~~~~~~~~l 197 (207)
T cd08911 132 VQHPSYPE----------SPKKVRVEDYWSYMVIRPHKSFDEPGFE--FVLTYF-DN-PGVNIPSYITSWVAMSGMPDFL 197 (207)
T ss_pred CCCCCCCC----------CCCCEEEEEeEEEEEEEeCCCCCCCCeE--EEEEEE-eC-CCCccCHHHHHHHHHhhccHHH
Confidence 22111111 00113367899999999873 35553 333333 24 4332 23345455566666667
Q ss_pred HHHHHHHhh
Q 028067 193 KSLADVSEH 201 (214)
Q Consensus 193 ~~L~~~le~ 201 (214)
++|++.+.+
T Consensus 198 ~~l~~a~~~ 206 (207)
T cd08911 198 ERLRNAALK 206 (207)
T ss_pred HHHHHHHhc
Confidence 777776643
No 62
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=87.25 E-value=17 Score=30.65 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=72.4
Q ss_pred ee-cCCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeE-EEEEeeCCCCc---ceEEEEEEEEe-CCCcEEEEEEE
Q 028067 46 HI-KAPVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSV-REVNVKSGLPA---TTSTERLELLD-DEEHIFGMRIV 118 (214)
Q Consensus 46 ~I-~APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsv-R~l~~~~G~p~---~~v~ErL~~~D-~~~~~~~Y~iv 118 (214)
++ ++|++++.+++.|....++|.+.+.++++ +-+..-|.. -++.+.---|. -.+--|-...| +....+....+
T Consensus 57 ~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv 136 (209)
T cd08870 57 VFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGV 136 (209)
T ss_pred EEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCC
Confidence 56 67999999999999988999999988864 422111221 11222111111 12222222233 22222222222
Q ss_pred cCcccceeeecccccccc-CCCcceeeEEEEEEEee--cCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028067 119 GGDHRLKIIWNFSNFIST-SSSKLQNYSSIVTVHPE--VIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNLKSL 195 (214)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~-~~~p~~~y~ati~v~p~--~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL~~L 195 (214)
. ++. +.. ...-+..|.+.+.++|. +++++.++++.. .++--....-.+..++....-.-|++|
T Consensus 137 ~--~~~---------~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~---~dp~G~IP~wlvN~~~~~~~~~~l~~l 202 (209)
T cd08870 137 P--YPS---------VPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYF---HNPDGGIPRELAKLAVKRGMPGFLKKL 202 (209)
T ss_pred c--CCC---------CCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEE---ECCCCCCCHHHHHHHHHhhhHHHHHHH
Confidence 2 111 001 22346889999999998 545554444332 243223334445455555555566667
Q ss_pred HHHHh
Q 028067 196 ADVSE 200 (214)
Q Consensus 196 ~~~le 200 (214)
++.+.
T Consensus 203 ~~a~~ 207 (209)
T cd08870 203 ENALR 207 (209)
T ss_pred HHHHh
Confidence 66553
No 63
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=84.82 E-value=24 Score=30.24 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=80.9
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCCCCc---ceEEEEEEEEeCCC
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGLPA---TTSTERLELLDDEE 110 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G~p~---~~v~ErL~~~D~~~ 110 (214)
..+..++ +|++++++|...+-|- .+.|.+.+.++.+ + ++.. -+-...+..--|. ..+.-|.-..|.++
T Consensus 52 ~~~r~~~--~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~--~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~ 125 (204)
T cd08908 52 RLWRTTI--EVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQT--EIYQYVQNSMAPHPARDYVVLRTWRTNLPK 125 (204)
T ss_pred EEEEEEE--EeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCc--eEEEEEccCCCCCCCcEEEEEEEEEEeCCC
Confidence 3456666 8899999999999877 5789999988864 4 2221 1211111111111 12222233334444
Q ss_pred cEEEEEEEcCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHH
Q 028067 111 HIFGMRIVGGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKC 190 (214)
Q Consensus 111 ~~~~Y~iv~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~ 190 (214)
..+.-.+....+.. +.....-+..+.+-..++|.+.++|.+|.+.. .| |-|....-+.....-+...
T Consensus 126 g~~~I~~~Sv~h~~---------~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~---~D-PgG~iP~W~~N~~g~~~~~ 192 (204)
T cd08908 126 GACALLATSVDHDR---------APVAGVRVNVLLSRYLIEPCGSGKSKLTYMCR---ID-LRGHMPEWYTKSFGHLCAA 192 (204)
T ss_pred CeEEEEEeecCccc---------CCcCceEEEEEeeEEEEEECCCCcEEEEEEEE---eC-CCCCCcHHHHhhHHHHHHH
Confidence 43433332222222 10111223455677788998766776666554 24 5555555555666888888
Q ss_pred HHHHHHHHHhh
Q 028067 191 NLKSLADVSEH 201 (214)
Q Consensus 191 gL~~L~~~le~ 201 (214)
-|..|++-+.+
T Consensus 193 ~~~~~r~sf~~ 203 (204)
T cd08908 193 EVVKIRDSFSN 203 (204)
T ss_pred HHHHHHhhccC
Confidence 88888887753
No 64
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=81.96 E-value=36 Score=30.04 Aligned_cols=37 Identities=27% Similarity=0.542 Sum_probs=32.6
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v 76 (214)
.+..+. .+++|++++.+++.|....++|.+.+.++++
T Consensus 79 ~fk~e~--~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~v 115 (236)
T cd08914 79 SVWVEK--HVKRPAHLAYRLLSDFTKRPLWDPHFLSCEV 115 (236)
T ss_pred EEEEEE--EEcCCHHHHHHHHhChhhhchhHHhhceEEE
Confidence 455555 7799999999999999999999999999975
No 65
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=75.33 E-value=49 Score=27.95 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=70.3
Q ss_pred eec-CCHHHHHHHHhcCCCCCccCccceEEEE-ecCCCCCeEEEEEeeCCCCc---ceE-EEEEEEEeCCCcEEEEEEEc
Q 028067 46 HIK-APVHLVWSLVRRFDQPQKYKPFVSRCIV-QGDLQIGSVREVNVKSGLPA---TTS-TERLELLDDEEHIFGMRIVG 119 (214)
Q Consensus 46 ~I~-APae~VW~vi~Df~~l~~W~P~V~s~~v-eG~g~VGsvR~l~~~~G~p~---~~v-~ErL~~~D~~~~~~~Y~iv~ 119 (214)
+++ ++++.+.+++.|....+.|.+.+.++.- +.++ -.+-.+.++..-|. -.+ .-+....|.++..+-.-+..
T Consensus 56 ~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~ 133 (207)
T cd08910 56 VLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILAR 133 (207)
T ss_pred EEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEec
Confidence 566 7999999999999999999998876521 2222 11222333222121 111 11222344333321110001
Q ss_pred C-cccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 028067 120 G-DHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT-KDETCYFVEALIKCNLKSLAD 197 (214)
Q Consensus 120 g-~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~-~~~~~~~v~~~~~~gL~~L~~ 197 (214)
. +++.- -...+-.-+..|.+.+.++|.++++|.++++.. .+ |.|.- .-.+..+.......-|++|++
T Consensus 134 s~~~p~~-------P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~---~D-PgG~IP~wlvN~~~~~~~~~~l~~l~k 202 (207)
T cd08910 134 STSLPQL-------PEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYF---DN-PGGMIPSWLINWAAKNGVPNFLKDMQK 202 (207)
T ss_pred CCCCCCC-------CCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEE---eC-CCCcchHHHHHHHHHHhhHHHHHHHHH
Confidence 1 11110 000111235789999999998766664444332 24 33332 234444555555566667766
Q ss_pred HHh
Q 028067 198 VSE 200 (214)
Q Consensus 198 ~le 200 (214)
.+.
T Consensus 203 a~~ 205 (207)
T cd08910 203 ACQ 205 (207)
T ss_pred HHh
Confidence 553
No 66
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=74.45 E-value=50 Score=27.55 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=30.7
Q ss_pred eEEEEEeeeecCCHHHHHHHHhc--CCCCCccCccceEEEE
Q 028067 38 QCSSSLVKHIKAPVHLVWSLVRR--FDQPQKYKPFVSRCIV 76 (214)
Q Consensus 38 ~ve~sI~~~I~APae~VW~vi~D--f~~l~~W~P~V~s~~v 76 (214)
.+..+. .|++++++|.+++.| .....+|.+.+.++++
T Consensus 47 ~~k~~~--~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~ 85 (206)
T cd08867 47 LYRAEG--IVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEV 85 (206)
T ss_pred EEEEEE--EEcCCHHHHHHHHHhcCccccccccccccceEE
Confidence 455555 789999999999999 6667899999999874
No 67
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.55 E-value=33 Score=31.41 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=65.1
Q ss_pred eeeecCCHHHHHHHHhcCCCCCccCccceEEEEecCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCc-EEEEEEEcCcc
Q 028067 44 VKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIVQGDLQIGSVREVNVKSGLPATTSTERLELLDDEEH-IFGMRIVGGDH 122 (214)
Q Consensus 44 ~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~veG~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~-~~~Y~iv~g~~ 122 (214)
..+++++++++.+.+.|...+..|.-... .++.+. -|. +.+-+|. +.-+++++.+.++ .+.|++-+
T Consensus 178 ~~tfn~~~~eLy~~fld~~rv~~wt~S~a--~l~~~~-~g~---f~lf~Gn----Vtg~~~~~e~~K~Iv~kWrl~~--- 244 (301)
T KOG2936|consen 178 SATFNCRVDELYEIFLDPERVKAWTRSPA--ELEADP-GGK---FSLFDGN----VTGEFLELEKNKKIVMKWRLKS--- 244 (301)
T ss_pred hhhcCCCHHHHHHHHhcHHHHHHhcCChh--hcccCC-CCc---eEEeccc----ceeeeeeecCCCeEEEEEeccc---
Confidence 33889999999999999999988976322 344321 132 2333673 4445556666544 34565533
Q ss_pred cceeeeccccccccCCCcceeeEEEEEEEeecC-CCcceEEEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Q 028067 123 RLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVI-DGRPGTLVIESFVVDVPDGNTKDETCYFVEALIKCNL 192 (214)
Q Consensus 123 ~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~-~gs~~t~~~~s~~~~~p~~~~~~~~~~~v~~~~~~gL 192 (214)
+= ..+.|||+++.... +.+..++.+. ++|.+.. +.++.-.+..|=..|
T Consensus 245 ----------Wp-------~~~~atI~~~f~~~~~~t~l~~~~k----gVP~~ee-e~~~~~wq~yyf~~I 293 (301)
T KOG2936|consen 245 ----------WP-------DGHDATITLTFYESQGETKLQVKQK----GVPIGEE-ENTRQGWQEYYFEPI 293 (301)
T ss_pred ----------CC-------CCccceEEEEEecCCCceEEEEEec----CCCcchh-HHHHhhHHHHhhhHH
Confidence 21 56778888887653 3343333332 5676642 334444444443333
No 68
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=64.03 E-value=92 Score=26.58 Aligned_cols=38 Identities=5% Similarity=-0.043 Sum_probs=30.5
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v 76 (214)
.....+- .|+++++++++++.+.....+|.+.+.++++
T Consensus 46 kl~k~eg--vi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~i 83 (204)
T cd08904 46 NLYRVEG--IIPESPAKLIQFMYQPEHRIKWDKSLQVYKM 83 (204)
T ss_pred eEEEEEE--EecCCHHHHHHHHhccchhhhhcccccceee
Confidence 3344444 7899999999999997777899999988863
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=60.76 E-value=90 Score=25.34 Aligned_cols=146 Identities=14% Similarity=0.028 Sum_probs=75.7
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCCccCccceEEEE-e--cCCCCCeEEEEEeeCCC--CcceEEEEE----EEE-
Q 028067 37 HQCSSSLVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV-Q--GDLQIGSVREVNVKSGL--PATTSTERL----ELL- 106 (214)
Q Consensus 37 ~~ve~sI~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~v-e--G~g~VGsvR~l~~~~G~--p~~~v~ErL----~~~- 106 (214)
..+.... .++++++++...+.+-.. .|.+.+.++++ + .++ ..+......... |.. -||-+ ...
T Consensus 46 ~~~k~~~--~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~--~~i~~~~~~~~~~~p~~-~RDfv~~~~~~~~ 118 (206)
T PF01852_consen 46 KMFKAEG--VVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED--TDIVYFVMKSPWPGPVS-PRDFVFLRSWRKD 118 (206)
T ss_dssp EEEEEEE--EESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT--EEEEEEEEE-CTTTTSS-EEEEEEEEEEEEC
T ss_pred eEEEEEE--EEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCC--CeEEEEEecccCCCCCC-CcEEEEEEEEEEe
Confidence 3444455 789999966666655443 89999998874 4 222 345444443322 432 13322 222
Q ss_pred eCCCcEEEEEEEc-CcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEEEEEeeCCCCCC-HHHHHHHH
Q 028067 107 DDEEHIFGMRIVG-GDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIESFVVDVPDGNT-KDETCYFV 184 (214)
Q Consensus 107 D~~~~~~~Y~iv~-g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~s~~~~~p~~~~-~~~~~~~v 184 (214)
++....+..+=++ ...+. .+.+..-...+.+-+.++|.+++.|.++++.. .| |.|.. .-.+..++
T Consensus 119 ~~~~~~i~~~Si~~~~~~~---------~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~---~D-~~G~iP~~~~n~~~ 185 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPP---------NSKGYVRAEILISGWVIRPLGDGRTRVTYVSQ---VD-PKGWIPSWLVNMVV 185 (206)
T ss_dssp TTSEEEEEEEEEEBTTSST---------T-TTSEEEEEESEEEEEEEETTCEEEEEEEEE---EE-SSSSSHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccc---------cccCcceeeeeeEeEEEEEccCCCceEEEEEE---EC-CCCCChHHHHHHHH
Confidence 2222333332222 11111 01122234577888999999865565555543 35 33333 33444555
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028067 185 EALIKCNLKSLADVSEHL 202 (214)
Q Consensus 185 ~~~~~~gL~~L~~~le~~ 202 (214)
.......++.|++.+++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 186 KSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHh
Confidence 555666667777776654
No 70
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=58.82 E-value=84 Score=24.38 Aligned_cols=93 Identities=8% Similarity=0.035 Sum_probs=57.0
Q ss_pred EeeeecCCHHHHHHHHhcCCCCCccCccceEEE---Ee-cCCCCCeEEEEEeeCCCCcceEEEEEEEEeCCCcEEEEEEE
Q 028067 43 LVKHIKAPVHLVWSLVRRFDQPQKYKPFVSRCI---VQ-GDLQIGSVREVNVKSGLPATTSTERLELLDDEEHIFGMRIV 118 (214)
Q Consensus 43 I~~~I~APae~VW~vi~Df~~l~~W~P~V~s~~---ve-G~g~VGsvR~l~~~~G~p~~~v~ErL~~~D~~~~~~~Y~iv 118 (214)
|++++++||+.+.+.|-+---. .+...+ +. ... .|....-++..+. ..+=+|+++.+ ++.|.+++.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~-----DI~~~tgk~~~~~~L-~G~~Y~K~~~~~~---~~~v~It~~~~-~~~Y~~~~~ 72 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLY-----DIKQATGKKLPVKQL-KGFSYQKKFKNKR---EAKVKITEYEP-NKRYAATFS 72 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHH-----HHHHHcCCCCChhhc-CCcEEEEEcCCCC---EEEEEEEEEcC-CCEEEEEEE
Confidence 4567899999999988642211 011110 00 112 4544444555553 45556889988 688888885
Q ss_pred cCcccceeeeccccccccCCCcceeeEEEEEEEeecCCCcceEEEEE
Q 028067 119 GGDHRLKIIWNFSNFISTSSSKLQNYSSIVTVHPEVIDGRPGTLVIE 165 (214)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~~~p~~~y~ati~v~p~~~~gs~~t~~~~ 165 (214)
. +...+..+-.+.|.+++.+.+++...
T Consensus 73 s--------------------~~~~~~i~Y~i~~~~~~~~~v~y~E~ 99 (120)
T PF11687_consen 73 S--------------------SRGTFTISYEIEPLDDGSIEVTYEEE 99 (120)
T ss_pred e--------------------cCCCEEEEEEEEECCCCcEEEEEEEE
Confidence 4 23678888889999865565555543
No 71
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=37.82 E-value=2.7e+02 Score=24.09 Aligned_cols=31 Identities=3% Similarity=0.032 Sum_probs=27.3
Q ss_pred eecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 028067 46 HIKAPVHLVWSLVRRFDQPQKYKPFVSRCIV 76 (214)
Q Consensus 46 ~I~APae~VW~vi~Df~~l~~W~P~V~s~~v 76 (214)
.|+..+++||+.+.+-....+|.+.+++|.+
T Consensus 54 vv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~I 84 (202)
T cd08902 54 VVEDVYNRIVDHIRPGPYRLDWDSLMTSMDI 84 (202)
T ss_pred EecCCHHHHHHHHhcccchhcccchhhheeH
Confidence 6689999999999986667799999999984
Done!