BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028068
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET
SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT
AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK

High Scoring Gene Products

Symbol, full name Information P value
AT5G01460 protein from Arabidopsis thaliana 3.4e-93
AT3G08930 protein from Arabidopsis thaliana 7.0e-93
DDB_G0283707
LMBR1-like conserved region-containing protein
gene from Dictyostelium discoideum 1.7e-26
DDB_G0293610
LMBR1-like conserved region-containing protein
gene from Dictyostelium discoideum 2.8e-26

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028068
        (214 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2179197 - symbol:AT5G01460 species:3702 "Arabi...   928  3.4e-93   1
TAIR|locus:2097618 - symbol:AT3G08930 species:3702 "Arabi...   925  7.0e-93   1
DICTYBASE|DDB_G0283707 - symbol:DDB_G0283707 "LMBR1-like ...   303  1.7e-26   1
DICTYBASE|DDB_G0293610 - symbol:DDB_G0293610 "LMBR1-like ...   301  2.8e-26   1


>TAIR|locus:2179197 [details] [associations]
            symbol:AT5G01460 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0016020
            "membrane" evidence=ISS] [GO:0005886 "plasma membrane"
            evidence=IDA] Pfam:PF04791 GO:GO:0016021 GO:GO:0005886
            EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AL161746
            eggNOG:NOG68571 HOGENOM:HOG000265403 ProtClustDB:CLSN2687125
            InterPro:IPR006876 EMBL:AY072197 EMBL:AY096440 IPI:IPI00545295
            PIR:T48168 RefSeq:NP_195766.1 UniGene:At.23267 PaxDb:Q9M028
            PRIDE:Q9M028 EnsemblPlants:AT5G01460.1 GeneID:831815
            KEGG:ath:AT5G01460 TAIR:At5g01460 InParanoid:Q9M028 OMA:AWIAHII
            PhylomeDB:Q9M028 Genevestigator:Q9M028 Uniprot:Q9M028
        Length = 509

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 181/214 (84%), Positives = 194/214 (90%)

Query:     1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
             MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct:   200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query:    61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
             GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct:   260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
             +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct:   320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query:   181 XXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMK 214
                          VIAGAMMLGL+LVFITIHPMK
Sbjct:   380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMK 413


>TAIR|locus:2097618 [details] [associations]
            symbol:AT3G08930 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0007033 "vacuole organization"
            evidence=RCA] Pfam:PF04791 GO:GO:0016021 GO:GO:0009506
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC010871 EMBL:AF083733
            EMBL:AY035091 EMBL:BT020414 IPI:IPI00544828 RefSeq:NP_566338.2
            UniGene:At.24515 PaxDb:Q9SR93 PRIDE:Q9SR93
            EnsemblPlants:AT3G08930.1 GeneID:820042 KEGG:ath:AT3G08930
            TAIR:At3g08930 eggNOG:NOG68571 HOGENOM:HOG000265403 KO:K14617
            OMA:NDAFALC PhylomeDB:Q9SR93 ProtClustDB:CLSN2687125
            Genevestigator:Q9SR93 InterPro:IPR006876 Uniprot:Q9SR93
        Length = 509

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 180/214 (84%), Positives = 194/214 (90%)

Query:     1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
             MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct:   200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query:    61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
             GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct:   260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
             +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct:   320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query:   181 XXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMK 214
                          VIAGAMMLGL+LVFITIHPMK
Sbjct:   380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMK 413


>DICTYBASE|DDB_G0283707 [details] [associations]
            symbol:DDB_G0283707 "LMBR1-like conserved
            region-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003674
            "molecular_function" evidence=ND] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
            dictyBase:DDB_G0283707 Pfam:PF04791 GO:GO:0016021 EMBL:AAFI02000056
            eggNOG:NOG68571 InterPro:IPR006876 ProtClustDB:CLSZ2429247
            RefSeq:XP_638976.2 EnsemblProtists:DDB0304473 GeneID:8624222
            KEGG:ddi:DDB_G0283707 InParanoid:Q54QP7 OMA:INEANCA Uniprot:Q54QP7
        Length = 507

 Score = 303 (111.7 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 70/216 (32%), Positives = 109/216 (50%)

Query:     2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
             R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct:   212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMIGDFKNRPQR-IPYDKYLERKKKIG 270

Query:    62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
             ++A EL +   T+      G   ++ RKN     + +  LEED + L+  Y  QG K   
Sbjct:   271 ERATELVEIGKTIQSRTSGGIMSKRDRKNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                  V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct:   328 -----VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLG 382

Query:   180 TXXXXXXXXXXXXXVIAGAMMLGLRLVFI-TIHPMK 214
                           V+ G    GLRL F+  IHPM+
Sbjct:   383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMR 418


>DICTYBASE|DDB_G0293610 [details] [associations]
            symbol:DDB_G0293610 "LMBR1-like conserved
            region-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003674
            "molecular_function" evidence=ND] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
            dictyBase:DDB_G0293610 Pfam:PF04791 GO:GO:0016021 EMBL:AAFI02000218
            eggNOG:NOG68571 OMA:NDAFALC InterPro:IPR006876 RefSeq:XP_629046.1
            EnsemblProtists:DDB0304472 GeneID:8629334 KEGG:ddi:DDB_G0293610
            InParanoid:Q54BI3 ProtClustDB:CLSZ2429247 Uniprot:Q54BI3
        Length = 507

 Score = 301 (111.0 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 69/216 (31%), Positives = 108/216 (50%)

Query:     2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
             R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct:   212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMITDFKNRPQR-IPYDKYLERKKKIG 270

Query:    62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
             ++A EL     T+      G   ++ R+N     + +  LEED + L+  Y  QG K   
Sbjct:   271 ERATELVDVGKTIQSRTTGGIMSKRDRRNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                  V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct:   328 -----VILYYAQFFGGFIALGVSLGWLLHIIIYMITAPEPFHPFLNSLVISLNNAWGFLG 382

Query:   180 TXXXXXXXXXXXXXVIAGAMMLGLRLVFI-TIHPMK 214
                           V+ G    GLRL F+  IHPM+
Sbjct:   383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMR 418


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.141   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       201   0.00089  111 3  11 22  0.43    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  159 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.68u 0.16s 24.84t   Elapsed:  00:00:01
  Total cpu time:  24.68u 0.16s 24.84t   Elapsed:  00:00:01
  Start:  Fri May 10 01:18:59 2013   End:  Fri May 10 01:19:00 2013

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