Query 028068
Match_columns 214
No_of_seqs 101 out of 132
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w6a_A ARF GTPase-activating p 89.7 1.1 3.7E-05 30.4 6.1 38 33-77 2-42 (63)
2 2yy0_A C-MYC-binding protein; 87.6 0.7 2.4E-05 30.5 4.0 44 33-77 3-48 (53)
3 3s9g_A Protein hexim1; cyclin 80.0 13 0.00044 27.6 8.4 57 48-110 30-86 (104)
4 3rvy_A ION transport protein; 75.6 1.5 5.2E-05 36.9 2.7 24 20-43 218-241 (285)
5 3pjs_K KCSA, voltage-gated pot 73.7 3.4 0.00012 32.5 4.2 24 21-44 100-123 (166)
6 3hd7_A Vesicle-associated memb 73.7 22 0.00075 25.4 10.1 25 52-76 13-37 (91)
7 3b5x_A Lipid A export ATP-bind 72.4 61 0.0021 30.0 18.1 12 27-38 170-181 (582)
8 3eff_K Voltage-gated potassium 68.8 8.4 0.00029 29.1 5.3 22 20-41 72-93 (139)
9 2f23_A Anti-cleavage anti-GREA 68.6 34 0.0012 26.5 9.0 62 48-109 7-73 (156)
10 3b60_A Lipid A export ATP-bind 68.4 75 0.0026 29.4 14.5 31 7-37 145-180 (582)
11 2lw1_A ABC transporter ATP-bin 68.0 8.6 0.00029 27.3 4.9 54 57-110 24-77 (89)
12 1rh5_B Preprotein translocase 66.4 14 0.00047 25.9 5.5 68 91-162 5-72 (74)
13 3he5_B Synzip2; heterodimeric 65.7 8.6 0.00029 24.4 3.9 25 87-111 8-32 (52)
14 2kog_A Vesicle-associated memb 64.5 15 0.00051 27.8 5.9 25 52-76 41-65 (119)
15 4f4c_A Multidrug resistance pr 60.7 1.6E+02 0.0054 30.4 17.2 35 6-40 215-254 (1321)
16 3qf4_B Uncharacterized ABC tra 59.9 1.1E+02 0.0038 28.4 13.2 32 8-39 158-194 (598)
17 4a82_A Cystic fibrosis transme 55.4 1.3E+02 0.0044 27.8 14.8 30 10-39 144-178 (578)
18 1lrz_A FEMA, factor essential 54.3 52 0.0018 29.2 8.6 51 59-109 251-301 (426)
19 2yl4_A ATP-binding cassette SU 54.1 1.4E+02 0.0047 27.7 18.0 12 27-38 167-178 (595)
20 4h22_A Leucine-rich repeat fli 52.5 39 0.0013 25.1 6.2 69 48-116 16-85 (103)
21 3kdq_A Uncharacterized conserv 52.3 73 0.0025 25.0 8.2 63 48-110 77-149 (154)
22 3oja_B Anopheles plasmodium-re 51.4 34 0.0012 31.3 7.1 26 86-111 555-580 (597)
23 2l5g_B Putative uncharacterize 51.2 27 0.00093 21.8 4.3 18 86-103 20-37 (42)
24 2dq0_A Seryl-tRNA synthetase; 50.9 77 0.0026 28.9 9.3 57 55-111 38-98 (455)
25 3qf4_A ABC transporter, ATP-bi 50.6 1.6E+02 0.0054 27.3 14.1 29 10-38 146-179 (587)
26 4dzo_A Mitotic spindle assembl 50.0 16 0.00056 27.7 3.9 28 89-116 4-31 (123)
27 3qne_A Seryl-tRNA synthetase, 49.7 78 0.0027 29.4 9.2 57 55-111 40-100 (485)
28 3vou_A ION transport 2 domain 48.8 56 0.0019 24.7 6.9 15 25-39 89-103 (148)
29 3sjb_C Golgi to ER traffic pro 48.4 76 0.0026 23.1 7.1 27 85-111 52-78 (93)
30 2oxj_A Hybrid alpha/beta pepti 48.3 17 0.00056 21.8 2.8 22 56-77 2-23 (34)
31 3zbh_A ESXA; unknown function, 48.2 48 0.0017 22.5 6.0 69 48-116 9-90 (99)
32 2bni_A General control protein 47.6 16 0.00053 21.9 2.6 22 56-77 2-23 (34)
33 1go4_E MAD1 (mitotic arrest de 46.4 56 0.0019 24.1 6.2 63 48-110 9-96 (100)
34 3mky_B Protein SOPB; partition 45.8 19 0.00065 29.5 3.9 49 26-76 62-110 (189)
35 1yzm_A FYVE-finger-containing 45.5 36 0.0012 22.1 4.4 21 90-110 29-49 (51)
36 4i0x_B ESAT-6-like protein MAB 44.8 70 0.0024 22.5 6.5 34 85-118 63-96 (103)
37 1ic2_A Tropomyosin alpha chain 44.2 73 0.0025 21.9 6.3 55 57-111 8-63 (81)
38 2dq3_A Seryl-tRNA synthetase; 43.6 76 0.0026 28.6 8.0 23 54-76 36-58 (425)
39 3oja_B Anopheles plasmodium-re 43.5 96 0.0033 28.2 8.8 13 92-104 540-552 (597)
40 3hnw_A Uncharacterized protein 42.7 74 0.0025 24.4 6.7 27 85-111 106-132 (138)
41 1z0k_B FYVE-finger-containing 42.5 27 0.00092 24.1 3.6 21 90-110 47-67 (69)
42 1ses_A Seryl-tRNA synthetase; 42.0 1.2E+02 0.004 27.4 8.9 54 56-111 36-93 (421)
43 3c3f_A Alpha/beta peptide with 41.8 24 0.00082 21.0 2.8 22 56-77 2-23 (34)
44 3fav_B ESAT-6, 6 kDa early sec 41.6 80 0.0027 21.4 7.5 70 48-117 5-87 (94)
45 2p4v_A Transcription elongatio 41.4 79 0.0027 24.6 6.8 62 48-109 6-73 (158)
46 4ioe_A Secreted protein ESXB; 41.3 79 0.0027 21.3 8.3 31 48-78 9-39 (93)
47 1sfc_A VAMP 2, protein (synapt 39.5 1E+02 0.0035 22.1 7.2 24 53-76 39-62 (96)
48 1l4a_A Synaptobrevin; snare, s 39.1 92 0.0032 21.4 6.4 25 52-76 23-47 (80)
49 1ez3_A Syntaxin-1A; three heli 38.8 1.1E+02 0.0037 22.1 7.1 63 52-114 51-120 (127)
50 3m48_A General control protein 38.4 24 0.00083 20.9 2.5 19 58-76 3-21 (33)
51 3na7_A HP0958; flagellar bioge 38.3 89 0.003 25.9 7.1 22 89-110 90-111 (256)
52 3arc_T Photosystem II reaction 37.1 40 0.0014 19.9 3.2 20 5-24 3-22 (32)
53 3sja_C Golgi to ER traffic pro 36.6 99 0.0034 21.0 7.3 20 85-104 35-54 (65)
54 3twe_A Alpha4H; unknown functi 36.5 53 0.0018 18.1 3.5 11 66-76 12-22 (27)
55 4h33_A LMO2059 protein; bilaye 35.5 27 0.00091 26.4 3.1 25 20-44 75-99 (137)
56 2d1l_A Metastasis suppressor p 35.5 1.2E+02 0.004 25.7 7.4 25 52-76 132-156 (253)
57 1vcs_A Vesicle transport throu 35.4 1.2E+02 0.0042 21.7 8.1 53 59-111 42-96 (102)
58 2xrh_A Protein HP0721; unknown 35.3 1.1E+02 0.0038 22.5 6.3 47 48-94 26-79 (100)
59 3iv1_A Tumor susceptibility ge 35.3 1.1E+02 0.0038 21.4 6.0 25 87-111 51-75 (78)
60 2vs0_A Virulence factor ESXA; 35.0 1E+02 0.0035 20.7 9.2 70 48-117 6-88 (97)
61 2v66_B Nuclear distribution pr 33.8 1.5E+02 0.005 22.1 6.9 22 90-111 50-71 (111)
62 1z0j_B FYVE-finger-containing 33.7 51 0.0017 22.0 3.8 22 90-111 36-57 (59)
63 1uo4_A General control protein 33.1 36 0.0012 20.3 2.6 21 57-77 3-23 (34)
64 3lay_A Zinc resistance-associa 32.9 82 0.0028 25.2 5.7 20 87-106 111-130 (175)
65 3u1c_A Tropomyosin alpha-1 cha 32.6 1.4E+02 0.0047 21.5 6.9 20 90-109 45-64 (101)
66 3c3g_A Alpha/beta peptide with 32.6 57 0.0019 19.3 3.4 21 57-77 2-22 (33)
67 3bhp_A UPF0291 protein YNZC; N 32.4 69 0.0024 21.4 4.3 34 66-99 5-38 (60)
68 1kd8_B GABH BLL, GCN4 acid bas 32.1 42 0.0014 20.3 2.8 20 57-76 3-22 (36)
69 3vp9_A General transcriptional 31.7 46 0.0016 24.2 3.6 27 87-113 48-74 (92)
70 2yy0_A C-MYC-binding protein; 31.7 77 0.0026 20.4 4.4 27 85-111 22-48 (53)
71 2p22_C Protein SRN2; endosome, 30.9 1.3E+02 0.0045 24.3 6.7 25 91-115 130-154 (192)
72 1wle_A Seryl-tRNA synthetase; 30.6 1E+02 0.0035 28.6 6.7 24 88-111 122-145 (501)
73 2w83_C C-JUN-amino-terminal ki 30.5 1.4E+02 0.0048 20.9 7.0 55 51-111 19-73 (77)
74 2jvd_A UPF0291 protein YNZC; s 30.2 83 0.0028 20.6 4.3 32 66-97 5-36 (54)
75 1urq_A M-tomosyn isoform; tran 29.9 1.2E+02 0.0042 20.1 6.9 24 53-76 13-36 (63)
76 1grj_A GREA protein; transcrip 29.7 1.9E+02 0.0066 22.2 8.2 62 48-109 6-73 (158)
77 3v1a_A Computational design, M 29.6 77 0.0026 20.3 4.0 18 90-107 28-45 (48)
78 1waz_A MERF; protein structure 29.3 25 0.00087 22.3 1.6 13 20-32 4-16 (46)
79 3onj_A T-snare VTI1; helix, HA 29.2 1.5E+02 0.0053 21.0 7.5 55 56-110 35-94 (97)
80 3fav_A ESAT-6-like protein ESX 29.1 1.4E+02 0.0048 20.5 8.1 71 48-118 7-90 (101)
81 3efg_A Protein SLYX homolog; x 28.8 1.5E+02 0.005 20.5 6.0 58 48-111 7-64 (78)
82 1v74_B Colicin D immunity prot 28.4 1.6E+02 0.0056 21.0 6.1 27 34-63 7-33 (87)
83 4f4c_A Multidrug resistance pr 28.3 5E+02 0.017 26.6 12.8 37 5-41 874-915 (1321)
84 3b5n_A Synaptobrevin homolog 1 28.2 1.2E+02 0.0042 19.6 7.2 26 51-76 9-34 (61)
85 2lw1_A ABC transporter ATP-bin 28.1 1.5E+02 0.0052 20.5 9.1 33 82-114 15-47 (89)
86 3g9w_C Integrin beta-1D; prote 27.9 31 0.0011 22.4 2.0 13 85-97 8-20 (52)
87 1n7s_A Vesicle-associated memb 26.4 1.4E+02 0.0046 19.4 7.2 26 51-76 11-36 (63)
88 2qyw_A Vesicle transport throu 26.3 1.8E+02 0.0062 20.8 6.9 18 87-104 83-100 (102)
89 2wt7_B Transcription factor MA 26.1 1.2E+02 0.0041 21.8 5.0 11 66-76 25-35 (90)
90 4i0x_A ESAT-6-like protein MAB 25.8 1.6E+02 0.0056 20.1 7.0 33 85-117 50-82 (94)
91 3v86_A De novo design helix; c 25.8 91 0.0031 17.2 3.9 19 89-107 7-25 (27)
92 2wq1_A General control protein 25.7 64 0.0022 19.1 2.8 20 57-76 2-21 (33)
93 2f95_B Sensory rhodopsin II tr 25.7 37 0.0013 24.8 2.3 19 92-110 126-144 (163)
94 3u59_A Tropomyosin beta chain; 25.5 1.8E+02 0.0063 20.6 6.9 18 90-107 45-62 (101)
95 2akf_A Coronin-1A; coiled coil 25.0 1.1E+02 0.0036 17.7 4.0 21 90-110 7-27 (32)
96 2nps_A VAMP-4, vesicle-associa 25.0 1.6E+02 0.0055 19.8 6.6 25 52-76 16-40 (74)
97 1s94_A S-syntaxin; three helix 24.9 2.4E+02 0.0082 21.7 8.3 68 50-117 80-154 (180)
98 1a92_A Delta antigen; leucine 24.0 1.3E+02 0.0045 19.3 4.3 24 88-111 13-36 (50)
99 1taf_B TFIID TBP associated fa 24.0 1.7E+02 0.0059 19.8 6.0 60 27-87 2-63 (70)
100 2lf0_A Uncharacterized protein 23.9 1.5E+02 0.0052 22.5 5.4 27 85-111 32-58 (123)
101 1gl2_A Endobrevin; membrane pr 23.7 1.6E+02 0.0055 19.3 5.7 25 52-76 17-41 (65)
102 1t3j_A Mitofusin 1; coiled coi 23.7 2.1E+02 0.0073 20.7 8.3 22 90-111 72-93 (96)
103 1hjb_A Ccaat/enhancer binding 23.6 2E+02 0.0068 20.4 8.1 63 50-114 13-75 (87)
104 3q8t_A Beclin-1; autophagy, AT 23.3 2.1E+02 0.0071 20.4 8.3 24 87-110 58-81 (96)
105 1wlq_A Geminin; coiled-coil; 2 23.1 1.9E+02 0.0064 20.5 5.4 21 56-76 29-49 (83)
106 3oja_A Leucine-rich immune mol 22.9 2.1E+02 0.0072 25.4 7.2 21 54-74 366-386 (487)
107 2l16_A SEC-independent protein 22.8 1.9E+02 0.0067 20.0 5.7 45 55-103 28-72 (78)
108 3arc_J Photosystem II reaction 22.6 49 0.0017 20.4 2.0 20 10-29 19-38 (40)
109 2k48_A Nucleoprotein; viral pr 22.4 1.9E+02 0.0064 21.5 5.5 29 48-76 32-60 (107)
110 3m9b_A Proteasome-associated A 22.4 1.7E+02 0.0059 24.8 6.1 29 83-111 69-97 (251)
111 3a5t_A Transcription factor MA 22.3 7.1 0.00024 29.3 -2.3 14 63-76 32-45 (107)
112 2w83_C C-JUN-amino-terminal ki 22.2 2E+02 0.0068 20.1 5.3 46 54-105 29-74 (77)
113 3gwk_C SAG1039, putative uncha 22.1 1.9E+02 0.0065 19.5 9.4 69 48-116 8-89 (98)
114 1a93_B MAX protein, coiled coi 21.4 1.4E+02 0.0047 17.7 3.9 23 88-110 6-28 (34)
115 2jee_A YIIU; FTSZ, septum, coi 21.2 2.2E+02 0.0076 20.0 5.6 53 59-111 10-63 (81)
116 3vlc_E Golgi to ER traffic pro 21.0 1.6E+02 0.0055 21.3 4.9 20 85-104 59-78 (94)
117 4dyl_A Tyrosine-protein kinase 20.8 4.3E+02 0.015 23.2 9.2 69 51-119 316-396 (406)
118 2hy6_A General control protein 20.7 84 0.0029 18.7 2.6 19 58-76 4-22 (34)
119 1s4x_A Integrin beta-3; cell a 20.4 51 0.0018 22.5 2.0 14 85-98 26-39 (67)
120 3rvy_A ION transport protein; 20.3 87 0.003 25.8 3.8 26 7-32 214-239 (285)
121 4a3a_A Amphiphysin; structural 20.2 2.7E+02 0.0093 22.8 6.9 57 54-110 130-186 (243)
122 1j1d_B Troponin T, TNT; THIN f 20.2 69 0.0024 23.7 2.8 12 90-101 78-89 (106)
123 1j1d_C Troponin I, TNI; THIN f 20.0 1.2E+02 0.0042 23.3 4.3 20 48-67 11-30 (133)
No 1
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=89.74 E-value=1.1 Score=30.43 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=24.4
Q ss_pred hHHHHhhcccCCCcccCHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 028068 33 PLGLIFSFIRRPKAVITRSQYIKEATEL---GKKARELKKAADTLHQE 77 (214)
Q Consensus 33 Pi~lI~~f~~Rpk~~is~~~~~~~~~~l---~~~~~~l~e~~~~l~~~ 77 (214)
|+|+--+ | |+-.||.+-|+.+ +.|.++|+.....+.++
T Consensus 2 ~~dlsDg------p-it~qeylevK~ALaaSeAkiQQLmkVN~~ls~E 42 (63)
T 2w6a_A 2 PLGSSDG------A-VTLQEYLELKKALATSEAKVQQLMKVNSSLSDE 42 (63)
T ss_dssp CCC--CC------S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCC------c-chHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHH
Confidence 5555555 3 9999999977777 45666666666666543
No 2
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=87.56 E-value=0.7 Score=30.48 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=21.4
Q ss_pred hHHHHhhccc--CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028068 33 PLGLIFSFIR--RPKAVITRSQYIKEATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 33 Pi~lI~~f~~--Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~ 77 (214)
|+|+|+.+.+ -|.. .+.+.+..+..++..+.++|.+.-++++++
T Consensus 3 AlefIk~~LG~~~p~~-~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 3 ALDFLKHHLGAATPEN-PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp -------------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888998887 7755 555556666667777777777776666653
No 3
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=80.03 E-value=13 Score=27.58 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=42.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
+|++++..+=.+++++...+.+..+.++.... ..-.++..+..+++.|.++...|..
T Consensus 30 mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~------~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 30 MSKQELIKEYLELEKSLSRMEDENNRLRLESK------RLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999988888899888898888888876532 2235677788888888877665543
No 4
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=75.60 E-value=1.5 Score=36.94 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=18.6
Q ss_pred HHHHHhhhhhhhhhHHHHhhcccC
Q 028068 20 LFSIFGGVGIACLPLGLIFSFIRR 43 (214)
Q Consensus 20 lfi~y~gvGlaaLPi~lI~~f~~R 43 (214)
.|++.+|+++.++|+..|-+...+
T Consensus 218 ~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 218 PFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999886653
No 5
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=73.75 E-value=3.4 Score=32.47 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=17.8
Q ss_pred HHHHhhhhhhhhhHHHHhhcccCC
Q 028068 21 FSIFGGVGIACLPLGLIFSFIRRP 44 (214)
Q Consensus 21 fi~y~gvGlaaLPi~lI~~f~~Rp 44 (214)
+....|+++.+++++.+-+...++
T Consensus 100 ~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 100 VVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp HHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444578888899998888876543
No 6
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=73.68 E-value=22 Score=25.40 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 52 QYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
|..|.+....+-.++++|+|+.|+.
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~ 37 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSE 37 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHH
Confidence 4455555556666667777766664
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=72.43 E-value=61 Score=29.99 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=6.0
Q ss_pred hhhhhhhHHHHh
Q 028068 27 VGIACLPLGLIF 38 (214)
Q Consensus 27 vGlaaLPi~lI~ 38 (214)
+.++.+|+-.+-
T Consensus 170 i~l~~~~l~~~~ 181 (582)
T 3b5x_A 170 VLIVVAPVVAFA 181 (582)
T ss_pred HHHHHHHHHHHH
Confidence 344555655543
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=68.80 E-value=8.4 Score=29.05 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=16.2
Q ss_pred HHHHHhhhhhhhhhHHHHhhcc
Q 028068 20 LFSIFGGVGIACLPLGLIFSFI 41 (214)
Q Consensus 20 lfi~y~gvGlaaLPi~lI~~f~ 41 (214)
.+....|+++.+++++.+-+..
T Consensus 72 ~~~~~~G~~~~~~~~~~i~~~~ 93 (139)
T 3eff_K 72 VVVMVAGITSFGLVTAALATWF 93 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888889998888754
No 9
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=68.60 E-value=34 Score=26.52 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHHHH
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~-----k~rr~l~~l~~~~~~Le~~~~~le 109 (214)
+|..-|...+.+++.+..+.-+..+.++.....|-+|. ..|.+...+.+..+.|+++.+.++
T Consensus 7 ~T~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~ 73 (156)
T 2f23_A 7 LTKAGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAV 73 (156)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 89999999999999877788888888887655554431 233445555666666666655543
No 10
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=68.41 E-value=75 Score=29.39 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHHH
Q 028068 7 EYVVALATIVGSVLFSIFGG-----VGIACLPLGLI 37 (214)
Q Consensus 7 ~f~i~~l~~iG~~lfi~y~g-----vGlaaLPi~lI 37 (214)
..+.+++++++.+.++++.+ +.++.+|+-.+
T Consensus 145 ~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~ 180 (582)
T 3b60_A 145 TVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSI 180 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555555555444433 33444555444
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.96 E-value=8.6 Score=27.32 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028068 57 ATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
-..+..+.+++-+....|+..-.+...-.+|-.++..+..+...++.+.+.+.+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777765544333233445666666666666666555554
No 12
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=66.37 E-value=14 Score=25.86 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 028068 91 VKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHP 162 (214)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~ 162 (214)
++++.+..++.-+|.+++-..-++.+..|.. ...-.-...-++.|++..++-+ +|+.+.++.+||..|
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~-~iak~~~iG~~imG~IGfiIkl---i~ipIn~ii~~~~~~ 72 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVLKKPTKDEYL-AVAKVTALGISLLGIIGYIIHV---PATYIKGILKPPTTP 72 (74)
T ss_dssp -------CCHHHHHHHHHHHSEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHhcccCCCCCC
Confidence 3444455555555555544443344332221 0011112355666777776654 788999999987554
No 13
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.69 E-value=8.6 Score=24.40 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.|+++.++++.--+||||++.+|..
T Consensus 8 lrkkiarlkkdnlqlerdeqnleki 32 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKI 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHH
Confidence 4556666666666666666666554
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=64.48 E-value=15 Score=27.76 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 52 QYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
|..+.+....+-.++++|+|+.|+.
T Consensus 41 evdeVk~IM~~NIdkvLeRGEkLd~ 65 (119)
T 2kog_A 41 QVDEVVDIMRVNVDKVLERDQKLSE 65 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3444555555555556666655554
No 15
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=60.66 E-value=1.6e+02 Score=30.41 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhhc
Q 028068 6 PEYVVALATIVGSVLFSIF-----GGVGIACLPLGLIFSF 40 (214)
Q Consensus 6 ~~f~i~~l~~iG~~lfi~y-----~gvGlaaLPi~lI~~f 40 (214)
..++.+++++++.+..+++ +-+.++.+|+-.+-.+
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~ 254 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGF 254 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555554 3456677787766554
No 16
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=59.94 E-value=1.1e+02 Score=28.41 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhh
Q 028068 8 YVVALATIVGSVLFSIF-----GGVGIACLPLGLIFS 39 (214)
Q Consensus 8 f~i~~l~~iG~~lfi~y-----~gvGlaaLPi~lI~~ 39 (214)
.+.+++++++.+.++++ +-+.++.+|+-++-.
T Consensus 158 ~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~ 194 (598)
T 3qf4_B 158 FFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLIT 194 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554443 334555666655543
No 17
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=55.44 E-value=1.3e+02 Score=27.78 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhh
Q 028068 10 VALATIVGSVLFSIF-----GGVGIACLPLGLIFS 39 (214)
Q Consensus 10 i~~l~~iG~~lfi~y-----~gvGlaaLPi~lI~~ 39 (214)
.+.+++++.+.++++ +-++++.+|+-++-.
T Consensus 144 ~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~ 178 (578)
T 4a82_A 144 LDCITIIIALSIMFFLDVKLTLAALFIFPFYILTV 178 (578)
T ss_dssp HHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 334455556654443
No 18
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=54.31 E-value=52 Score=29.23 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHH
Q 028068 59 ELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 59 ~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le 109 (214)
.++++.+++.+...+++.+-.+...+.|.+++++.++++...++++...++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 251 ELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444466666666655333333456777888888888888877766654
No 19
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=54.11 E-value=1.4e+02 Score=27.68 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=6.0
Q ss_pred hhhhhhhHHHHh
Q 028068 27 VGIACLPLGLIF 38 (214)
Q Consensus 27 vGlaaLPi~lI~ 38 (214)
+.++.+|+-++-
T Consensus 167 i~l~~~~l~~~~ 178 (595)
T 2yl4_A 167 FVLSVVPPVSII 178 (595)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555655443
No 20
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=52.46 E-value=39 Score=25.06 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcC-hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKG-RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s-~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~ 116 (214)
+|.+|+..+|+.+.=.++-|.+.-...+....+-.+. +.-.|+++++++....|..+...+.....+.+
T Consensus 16 VsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666776666666555555555555444322211111 12234677777777777777777666544444
No 21
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=52.28 E-value=73 Score=25.00 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=43.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcC----------hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKG----------RKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s----------~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
.|-.|..+.+.++..+...+.+.+..=..+...-+.| .+.|++.+++.++.|.|+..-+.+.+
T Consensus 77 ~tl~eaia~rd~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~l~k~~r~Ld~~IQ~~Nw 149 (154)
T 3kdq_A 77 MTLADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATMDAREIRKKADLAAKEYRQLDVDIQRLNW 149 (154)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhheeccCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555677788888888888888887755432111111 56788888888888888877666554
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.38 E-value=34 Score=31.31 Aligned_cols=26 Identities=23% Similarity=0.191 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.+++...+++|...++++..++++.
T Consensus 555 ~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 555 NKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666776777777666
No 23
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.20 E-value=27 Score=21.83 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 028068 86 KWRKNVKSVEKELLQLEE 103 (214)
Q Consensus 86 k~rr~l~~l~~~~~~Le~ 103 (214)
|.+.+++.++.....||+
T Consensus 20 Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 20 MVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555554
No 24
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.93 E-value=77 Score=28.94 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 55 KEATELGKKARELKKAADTLHQEE----RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 55 ~~~~~l~~~~~~l~e~~~~l~~~~----~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+++.++..+.++++.+.+++.++- +++....+-+.+.+.+++++..||.+.+.+++.
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666665555421 222222334455666666666666666655554
No 25
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=50.56 E-value=1.6e+02 Score=27.33 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHH-----hhhhhhhhhHHHHh
Q 028068 10 VALATIVGSVLFSIF-----GGVGIACLPLGLIF 38 (214)
Q Consensus 10 i~~l~~iG~~lfi~y-----~gvGlaaLPi~lI~ 38 (214)
.+.+++++.+.++++ +.+.++.+|+-.+-
T Consensus 146 ~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~ 179 (587)
T 3qf4_A 146 RAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLL 179 (587)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444 33455566655443
No 26
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=49.97 E-value=16 Score=27.74 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 028068 89 KNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~~~~~~ 116 (214)
+|++.+++++..+|.+.++|.+.|++..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks 31 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKI 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888766544
No 27
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=49.69 E-value=78 Score=29.39 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 55 KEATELGKKARELKKAADTLHQEE----RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 55 ~~~~~l~~~~~~l~e~~~~l~~~~----~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+++.++..++++++.+..++.++- +++.....-+.+.+.+++++..||.+.+.+++.
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666665555411 122222334445556666666666555554443
No 28
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=48.77 E-value=56 Score=24.68 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=7.9
Q ss_pred hhhhhhhhhHHHHhh
Q 028068 25 GGVGIACLPLGLIFS 39 (214)
Q Consensus 25 ~gvGlaaLPi~lI~~ 39 (214)
.|+++.+..++-+-+
T Consensus 89 ~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 89 IGIGLVFGFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 29
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=48.37 E-value=76 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.387 Sum_probs=18.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.|-||+++++..|+..+.+....-..+
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888877777665554443
No 30
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=48.29 E-value=17 Score=21.76 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028068 56 EATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~ 77 (214)
+.+++++++++|+.....++++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHH
Confidence 3567777888887777777643
No 31
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=48.25 E-value=48 Score=22.52 Aligned_cols=69 Identities=10% Similarity=0.177 Sum_probs=41.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCcC-------hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS------GSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~------~~~s-------~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
++.+++.....++...++++.+.-++|+..-.. |.-+ .+++...+++.+.+....+..+.....|.+
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 88 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILED 88 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777877777777777777752221 1111 234555555555555555555555555555
Q ss_pred Cc
Q 028068 115 GE 116 (214)
Q Consensus 115 ~~ 116 (214)
.+
T Consensus 89 ~d 90 (99)
T 3zbh_A 89 TD 90 (99)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=47.65 E-value=16 Score=21.89 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028068 56 EATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~ 77 (214)
+.++++++.++++.....|+++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~E 23 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNE 23 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHH
Confidence 4567888888888888777754
No 33
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.37 E-value=56 Score=24.05 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=37.9
Q ss_pred cCHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcc----CC------------cC------hHhHHHHHHHHHHHHHHH
Q 028068 48 ITRSQYIKEA---TELGKKARELKKAADTLHQEERS----GS------------KG------RKWRKNVKSVEKELLQLE 102 (214)
Q Consensus 48 is~~~~~~~~---~~l~~~~~~l~e~~~~l~~~~~~----~~------------~s------~k~rr~l~~l~~~~~~Le 102 (214)
.|..+|...+ ..+.+..++|+++-+.++.+-.. |. ++ ...++++.+|++|...|.
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLR 88 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666775543 44566777777777777752111 11 11 234567778888888888
Q ss_pred HHHHHHHH
Q 028068 103 EDVKLLEE 110 (214)
Q Consensus 103 ~~~~~le~ 110 (214)
++.+.+++
T Consensus 89 ~~v~~lEe 96 (100)
T 1go4_E 89 GLLRAMER 96 (100)
T ss_dssp HHHTTCC-
T ss_pred HHHHHHhc
Confidence 77776665
No 34
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=45.76 E-value=19 Score=29.50 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=34.0
Q ss_pred hhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 26 GVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 26 gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
.+-.|.||-++|..|++ |-- ++.+.+...........+.+.+..+.+.+
T Consensus 62 ~L~~A~LP~~lv~~fp~-p~d-Ls~~~~~~L~k~~~~~~~ll~~~a~~l~e 110 (189)
T 3mky_B 62 CINTAKLPKSVVALFSH-PGE-LSARSGDALQKAFTDKEELLKQQASNLHE 110 (189)
T ss_dssp HHHHHHSCHHHHHTSSS-GGG-SCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHcCC-HHh-cCchhHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678999999999985 877 99888777655454444444455555543
No 35
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=45.55 E-value=36 Score=22.13 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028068 90 NVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~ 110 (214)
++..|++.++.|+++...++.
T Consensus 29 EV~~Le~NLrEL~~ei~~~~~ 49 (51)
T 1yzm_A 29 EVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 777788888888888877764
No 36
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=44.77 E-value=70 Score=22.51 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=21.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 028068 85 RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKA 118 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~~ 118 (214)
.++++..+++++.+..+.+..+.....|...+..
T Consensus 63 ~~W~~~a~~l~~~L~~i~~~l~~a~~~y~~~e~~ 96 (103)
T 4i0x_B 63 KEWMDAARELVEGLSQMEEAARTAHGAYSEAQEA 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778888887777777777778777764
No 37
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.24 E-value=73 Score=21.93 Aligned_cols=55 Identities=11% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 57 ATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~~~~~~~~-~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
...+..+.+...++..+.+.+-+... ...+--.++..+++....||.+.+..++.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544322111 11223345666777777777776665554
No 38
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=43.59 E-value=76 Score=28.62 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028068 54 IKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
.+++.++..+.++++.+..++.+
T Consensus 36 ~~~~r~~~~~~~~l~~~~n~~sk 58 (425)
T 2dq3_A 36 DKRRREIIKRLEALRSERNKLSK 58 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666667777777766665
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.47 E-value=96 Score=28.23 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 028068 92 KSVEKELLQLEED 104 (214)
Q Consensus 92 ~~l~~~~~~Le~~ 104 (214)
+.++++...+|++
T Consensus 540 ~~~~~~~~~le~~ 552 (597)
T 3oja_B 540 EDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHH
Confidence 3333444444443
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.69 E-value=74 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=19.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
...++++..++++...|+++...+|..
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777654
No 41
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=42.48 E-value=27 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028068 90 NVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~ 110 (214)
|+..|++.+++|+++..+++.
T Consensus 47 EV~tLe~NLrEL~~ei~~~q~ 67 (69)
T 1z0k_B 47 EVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 677788888888888777653
No 42
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.00 E-value=1.2e+02 Score=27.37 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcCh----HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 56 EATELGKKARELKKAADTLHQEERSGSKGR----KWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~----k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++.++..+.++++.+..++.++-.+ .+. +-+.+.+.+++++..||.+.+.+++.
T Consensus 36 ~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 36 EVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666777776666653322 111 22345555666666666665555554
No 43
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.83 E-value=24 Score=21.04 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028068 56 EATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~ 77 (214)
+.+++++++++++.....++++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHH
Confidence 3567777777777776666643
No 44
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=41.58 E-value=80 Score=21.39 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=33.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCcC-------hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS------GSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~------~~~s-------~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
++.+++.....++...+.++.+.-.+|+..-.+ |.-+ .++++..+++++.+..+.+..+.....|..
T Consensus 5 v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y~~ 84 (94)
T 3fav_B 5 WNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMAS 84 (94)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666665555542211 2222 456666666666666666666666666776
Q ss_pred Ccc
Q 028068 115 GEK 117 (214)
Q Consensus 115 ~~~ 117 (214)
.+.
T Consensus 85 ~d~ 87 (94)
T 3fav_B 85 TEG 87 (94)
T ss_dssp ---
T ss_pred HHH
Confidence 665
No 45
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=41.36 E-value=79 Score=24.59 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=34.6
Q ss_pred cCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHHHH
Q 028068 48 ITRSQYIKEATELGKK-ARELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 48 is~~~~~~~~~~l~~~-~~~l~e~~~~l~~~~~~~~~s~-----k~rr~l~~l~~~~~~Le~~~~~le 109 (214)
+|..-|.+.+.+++.- ..+--+..+.++.....|-.|. ..|++...+.+..+.|+++.+.++
T Consensus 6 lT~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 6 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp ECHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred ccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 7877787777777743 3344455666665444444331 134455555555666665554443
No 46
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=41.33 E-value=79 Score=21.26 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEE 78 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~ 78 (214)
++.+++.....++...++++.+.-..|++.-
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~ 39 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDI 39 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888887633
No 47
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=39.48 E-value=1e+02 Score=22.05 Aligned_cols=24 Identities=4% Similarity=0.005 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 53 YIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
..+.+....+-.++++|+|+.|+.
T Consensus 39 ldeVk~IM~~NI~kvLeRGEkLd~ 62 (96)
T 1sfc_A 39 VDEVVDIMRVNVDKVLERDQKLSE 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344555555566677777777765
No 48
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=39.15 E-value=92 Score=21.41 Aligned_cols=25 Identities=4% Similarity=0.035 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 52 QYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
|..+.+....+-.++++|+|+.|+.
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~ 47 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISE 47 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4556666777778889999998886
No 49
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=38.76 E-value=1.1e+02 Score=22.10 Aligned_cols=63 Identities=6% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--c--CCcChH---hHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028068 52 QYIKEATELGKKARELKKAADTLHQEER--S--GSKGRK---WRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~~~~--~--~~~s~k---~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
++.....++.+.+..++..-+.+++... + +.-+.. -+.....+.+....+-.++...+..|++
T Consensus 51 ~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre 120 (127)
T 1ez3_A 51 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 120 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666676666666665221 1 112222 2335567888888888888887777654
No 50
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.38 E-value=24 Score=20.92 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028068 58 TELGKKARELKKAADTLHQ 76 (214)
Q Consensus 58 ~~l~~~~~~l~e~~~~l~~ 76 (214)
+++++++++|++....+++
T Consensus 3 ~QLE~kVEeLl~~n~~Le~ 21 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLEN 21 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHH
Confidence 4666677777766666654
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.29 E-value=89 Score=25.93 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028068 89 KNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~ 110 (214)
|+++.+.++...++++...++.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444443
No 52
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=37.10 E-value=40 Score=19.89 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028068 5 FPEYVVALATIVGSVLFSIF 24 (214)
Q Consensus 5 f~~f~i~~l~~iG~~lfi~y 24 (214)
..+|+.-+.+++|.++|+++
T Consensus 3 a~vYt~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 3 TITYVFIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 35788889999999998875
No 53
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=36.56 E-value=99 Score=20.99 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=12.8
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 028068 85 RKWRKNVKSVEKELLQLEED 104 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~ 104 (214)
.|-||+++++..++..+.+.
T Consensus 35 aKL~Rk~DKl~~ele~l~~~ 54 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777776666665544
No 54
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.51 E-value=53 Score=18.14 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.5
Q ss_pred HHHHHHHHHHh
Q 028068 66 ELKKAADTLHQ 76 (214)
Q Consensus 66 ~l~e~~~~l~~ 76 (214)
++.|+-+.+++
T Consensus 12 dlqerlrklrk 22 (27)
T 3twe_A 12 DLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 55
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=35.54 E-value=27 Score=26.40 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=18.6
Q ss_pred HHHHHhhhhhhhhhHHHHhhcccCC
Q 028068 20 LFSIFGGVGIACLPLGLIFSFIRRP 44 (214)
Q Consensus 20 lfi~y~gvGlaaLPi~lI~~f~~Rp 44 (214)
.+....|+++.+++++.+-++....
T Consensus 75 ~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 75 SIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999998876543
No 56
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=35.48 E-value=1.2e+02 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 52 QYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
+|+..++++.++..++...++..++
T Consensus 132 ~~k~~r~elkk~~~~~~k~qkK~rk 156 (253)
T 2d1l_A 132 EYKKARQEIKKKSSDTLKLQKKAKK 156 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 4555666666666666665555444
No 57
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=35.40 E-value=1.2e+02 Score=21.73 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC--cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 59 ELGKKARELKKAADTLHQEERSGS--KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 59 ~l~~~~~~l~e~~~~l~~~~~~~~--~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++++..++..|.-++.+-+-+... ...+...+++.+++++..|.++.+.+...
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555444433322 22456678888888888888888876654
No 58
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=35.34 E-value=1.1e+02 Score=22.46 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhh--ccCCcChHhHHHHHHH
Q 028068 48 ITRSQYIKEATELGKKARELKKAA-----DTLHQEE--RSGSKGRKWRKNVKSV 94 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~-----~~l~~~~--~~~~~s~k~rr~l~~l 94 (214)
...+++.+.++++.+|.+++-+.. +++++.. +-.++|.+++++.+.-
T Consensus 26 V~p~~~~dY~mEv~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS~ke~~~~r~a 79 (100)
T 2xrh_A 26 VAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKA 79 (100)
T ss_dssp SCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455667778888888887765554 3444432 2367888887776653
No 59
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=35.28 E-value=1.1e+02 Score=21.43 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
-.++-+.+......|.++.+.++.+
T Consensus 51 l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 51 LDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555544443
No 60
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=35.02 E-value=1e+02 Score=20.68 Aligned_cols=70 Identities=7% Similarity=0.223 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCcC-------hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS------GSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~------~~~s-------~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
++.+++.....++...+.++.+..++|+..-.. |.-+ .+++...+++.+.+..+.+..+.....|.+
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~ 85 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQE 85 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777766652221 2222 345556666666666666666666666776
Q ss_pred Ccc
Q 028068 115 GEK 117 (214)
Q Consensus 115 ~~~ 117 (214)
.+.
T Consensus 86 ~d~ 88 (97)
T 2vs0_A 86 QDQ 88 (97)
T ss_dssp ---
T ss_pred HHH
Confidence 665
No 61
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.82 E-value=1.5e+02 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028068 90 NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.-+.++..+|.||...+.+|.+
T Consensus 50 ~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 50 IKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHH
Confidence 3334444455555555555544
No 62
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=33.71 E-value=51 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028068 90 NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++..|.+.++.|+++....+..
T Consensus 36 EV~~Le~NLrEL~~ei~~~~~~ 57 (59)
T 1z0j_B 36 EVEVLTENLRELKHTLAKQKGG 57 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 7777888888888887776654
No 63
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.06 E-value=36 Score=20.28 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 028068 57 ATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~~~ 77 (214)
.+++++++++++.....|+++
T Consensus 3 M~QLEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHH
Confidence 457777777777777777653
No 64
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.93 E-value=82 Score=25.20 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 028068 87 WRKNVKSVEKELLQLEEDVK 106 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~ 106 (214)
|..+++++.+|..+|..+.+
T Consensus 111 DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 111 DTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 55566666666655555433
No 65
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.59 E-value=1.4e+02 Score=21.47 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028068 90 NVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le 109 (214)
++..+++....+|.+.+..+
T Consensus 45 Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444433
No 66
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.59 E-value=57 Score=19.28 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 028068 57 ATELGKKARELKKAADTLHQE 77 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~~~ 77 (214)
.+++++++++++.....++++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~E 22 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHH
Confidence 456777777777777666643
No 67
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=32.39 E-value=69 Score=21.43 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHH
Q 028068 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELL 99 (214)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~ 99 (214)
+.+++..+|-++.+..+.+...+.|-.+||++-.
T Consensus 5 ~~i~RINeLakK~K~~gLT~eEk~EQ~~LR~eYl 38 (60)
T 3bhp_A 5 AKIARINELAAKAKAGVITEEEKAEQQKLRQEYL 38 (60)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4566667777777777788777777666666543
No 68
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.11 E-value=42 Score=20.25 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028068 57 ATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~~ 76 (214)
.++++.++++|+..-..|++
T Consensus 3 MnQLE~KVEeLl~~~~~Le~ 22 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHH
Confidence 45666666666666555553
No 69
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=31.71 E-value=46 Score=24.15 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028068 87 WRKNVKSVEKELLQLEEDVKLLEEMYP 113 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~~~ 113 (214)
.-.|++..++.|++||..+++++..|.
T Consensus 48 Qi~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 48 QLAEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888877654
No 70
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.70 E-value=77 Score=20.43 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=18.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
.+-|++...+++++..|.++.+.+...
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777666654
No 71
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=30.85 E-value=1.3e+02 Score=24.32 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Q 028068 91 VKSVEKELLQLEEDVKLLEEMYPQG 115 (214)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~~~~~ 115 (214)
+++|+.+....|.+.+.+++.|..+
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F~~~ 154 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTTRSI 154 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4578899999999999999998764
No 72
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.63 E-value=1e+02 Score=28.62 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.+.+.+++++..||.+.+.+++.
T Consensus 122 ~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 122 RARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665555555443
No 73
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.47 E-value=1.4e+02 Score=20.90 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 51 SQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+|+.+++..++---++|+.+-+++-.+.. --|-++...++.-..++.+.+.+|+.
T Consensus 19 ~eLl~TKNaLnvvk~DLI~rvdELt~E~e------~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 19 TQLLETKNALNIVKNDLIAKVDELTCEKD------VLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777787777778877777765432 34445555555555555555555543
No 74
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=30.24 E-value=83 Score=20.63 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHH
Q 028068 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKE 97 (214)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~ 97 (214)
+.+++..+|-++.+..+.+...+.+-.+||++
T Consensus 5 ~~i~RINeLakK~K~~gLT~eEk~EQ~~LR~e 36 (54)
T 2jvd_A 5 AKIARINELAAKAKAGVITEEEKAEQQKLRQE 36 (54)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 34556666666666677777666666666654
No 75
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.87 E-value=1.2e+02 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 53 YIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 53 ~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
..+.+....+-.+++.|+|+.|+.
T Consensus 13 v~ev~~iM~~ni~kvlERGekL~~ 36 (63)
T 1urq_A 13 ASGVVGELARARLALDERGQKLSD 36 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777788888888875
No 76
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=29.66 E-value=1.9e+02 Score=22.23 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHHHH
Q 028068 48 ITRSQYIKEATELGKKAR-ELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKLLE 109 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~-~l~e~~~~l~~~~~~~~~s~-----k~rr~l~~l~~~~~~Le~~~~~le 109 (214)
+|..-|.+.+.+++.--. +--+..+.++...+.|-.|. ..|++...+.+..+.|+++.+.++
T Consensus 6 ~T~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~ 73 (158)
T 1grj_A 6 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 73 (158)
T ss_dssp EEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred cCHHHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCe
Confidence 777778777777774322 34445556665555554431 134455556666666666655544
No 77
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=29.62 E-value=77 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028068 90 NVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~ 107 (214)
|+..|++.+++|+++++.
T Consensus 28 EV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 28 EVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566666667766666543
No 78
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=29.26 E-value=25 Score=22.34 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=9.4
Q ss_pred HHHHHhhhhhhhh
Q 028068 20 LFSIFGGVGIACL 32 (214)
Q Consensus 20 lfi~y~gvGlaaL 32 (214)
+-+++|++|++|+
T Consensus 4 LViL~g~vGLsa~ 16 (46)
T 1waz_A 4 LVILLGVVGLSAL 16 (46)
T ss_dssp HHHHHHHHHHHHC
T ss_pred eehhHHHhhHHHH
Confidence 4567888888774
No 79
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=29.20 E-value=1.5e+02 Score=20.97 Aligned_cols=55 Identities=11% Similarity=0.242 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC--C--cChHhHHHHHHHHHHHHH-HHHHHHHHHH
Q 028068 56 EATELGKKARELKKAADTLHQEERSG--S--KGRKWRKNVKSVEKELLQ-LEEDVKLLEE 110 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~~~~~~--~--~s~k~rr~l~~l~~~~~~-Le~~~~~le~ 110 (214)
.-.++++..++..|.-++.+-+-+.. - ...+...+++.+++++.. |.++.+.+..
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444555555555555555444332 1 113455567777777777 7777776654
No 80
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=29.11 E-value=1.4e+02 Score=20.51 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCc-----------ChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS--GSK-----------GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~--~~~-----------s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
++.++......++..-+.++.+...+|+..-.+ +.- -.+++....++++.+..+.+..+.....|.+
T Consensus 7 v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~ 86 (101)
T 3fav_A 7 TDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSR 86 (101)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666643322 111 1456666667777777777777777777777
Q ss_pred Cccc
Q 028068 115 GEKA 118 (214)
Q Consensus 115 ~~~~ 118 (214)
.+..
T Consensus 87 ~d~~ 90 (101)
T 3fav_A 87 ADEE 90 (101)
T ss_dssp ----
T ss_pred HHHH
Confidence 7753
No 81
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.82 E-value=1.5e+02 Score=20.55 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++.+++.++-.+++.|..-.-+-.++|...- .+..+++++++++++.|.++.+.++.+
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v------~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEAL------ADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455555555555555555444444444321 356789999999999999888777754
No 82
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=28.41 E-value=1.6e+02 Score=20.98 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHhhcccCCCcccCHHHHHHHHHHHHHH
Q 028068 34 LGLIFSFIRRPKAVITRSQYIKEATELGKK 63 (214)
Q Consensus 34 i~lI~~f~~Rpk~~is~~~~~~~~~~l~~~ 63 (214)
+++.++|++-. ||+++|+++--+++++
T Consensus 7 i~la~~Fv~~~---IsA~~F~ee~wr~er~ 33 (87)
T 1v74_B 7 IDLAKLFLASK---ITAIEFSERICVERRR 33 (87)
T ss_dssp HHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc---CcHHHHHHHHHHHHhh
Confidence 68899999944 9999999955555544
No 83
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=28.26 E-value=5e+02 Score=26.63 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHHHhhcc
Q 028068 5 FPEYVVALATIVGSVLFSIFGG-----VGIACLPLGLIFSFI 41 (214)
Q Consensus 5 f~~f~i~~l~~iG~~lfi~y~g-----vGlaaLPi~lI~~f~ 41 (214)
+...+..++++++.+..+++.+ +.++.+|+-.+-.+.
T Consensus 874 l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~ 915 (1321)
T 4f4c_A 874 FSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYL 915 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666555543 455666766554443
No 84
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=28.25 E-value=1.2e+02 Score=19.57 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 51 SQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
.|..+.+....+-.++++|+|+.|+.
T Consensus 9 ~~l~evk~iM~~NI~~vl~RgekLd~ 34 (61)
T 3b5n_A 9 AEIDDTVGIMRDNINKVAERGERLTS 34 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45667777778888888999988886
No 85
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.09 E-value=1.5e+02 Score=20.55 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=18.2
Q ss_pred CcChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028068 82 SKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 82 ~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
++|-|.+|+++.+.++...||.+...++....+
T Consensus 15 KLSykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 15 KLSYKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555555555555555555555555555333
No 86
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Probab=27.93 E-value=31 Score=22.35 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=10.7
Q ss_pred hHhHHHHHHHHHH
Q 028068 85 RKWRKNVKSVEKE 97 (214)
Q Consensus 85 ~k~rr~l~~l~~~ 97 (214)
..||||+.+|++|
T Consensus 8 i~DrREyakFe~E 20 (52)
T 3g9w_C 8 IHDRREFAKFEKE 20 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHH
Confidence 5799999998776
No 87
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=26.39 E-value=1.4e+02 Score=19.42 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 51 SQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
.|..+.+....+-.++++|+|+.|+.
T Consensus 11 ~~l~ev~~iM~~NI~~vl~RGekLd~ 36 (63)
T 1n7s_A 11 AQVDEVVDIMRVNVDKVLERDQKLSE 36 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34566677777778888888888876
No 88
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=26.30 E-value=1.8e+02 Score=20.83 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 028068 87 WRKNVKSVEKELLQLEED 104 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~ 104 (214)
...+++.+++++..|.++
T Consensus 83 ~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 83 MMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334555555555555544
No 89
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.11 E-value=1.2e+02 Score=21.77 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=6.1
Q ss_pred HHHHHHHHHHh
Q 028068 66 ELKKAADTLHQ 76 (214)
Q Consensus 66 ~l~e~~~~l~~ 76 (214)
.++++-+.+++
T Consensus 25 ~lKq~RRtlKN 35 (90)
T 2wt7_B 25 RLKQKRRTLKN 35 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 45555556664
No 90
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=25.82 E-value=1.6e+02 Score=20.15 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=18.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 028068 85 RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~ 117 (214)
.+++...+++++.+..+.+..+.....|.+.+.
T Consensus 50 ~~w~~~a~~l~~~L~~i~~~l~~aa~~y~~~d~ 82 (94)
T 4i0x_A 50 DEMQDGATKVWNALTDIASTLGSNAAAFHAQET 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666777665
No 91
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.76 E-value=91 Score=17.17 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028068 89 KNVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~ 107 (214)
.|.-.++-|+|.|.++...
T Consensus 7 devgelkgevralkdevkd 25 (27)
T 3v86_A 7 DEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhc
Confidence 3455555566666555443
No 92
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.74 E-value=64 Score=19.05 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028068 57 ATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 57 ~~~l~~~~~~l~e~~~~l~~ 76 (214)
.+|++.++++|+.....+++
T Consensus 2 MnQLEdKVEell~~~~~le~ 21 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHH
Confidence 35666666666666655554
No 93
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=25.67 E-value=37 Score=24.80 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028068 92 KSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~ 110 (214)
+++++.+.++++..++++.
T Consensus 126 ~~l~~~~~~~~~~~~~~~~ 144 (163)
T 2f95_B 126 QSVRTSLEDAKNAREDAEQ 144 (163)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 94
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.46 E-value=1.8e+02 Score=20.63 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028068 90 NVKSVEKELLQLEEDVKL 107 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~ 107 (214)
++..+++....|+.+.+.
T Consensus 45 ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 95
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.03 E-value=1.1e+02 Score=17.70 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028068 90 NVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~ 110 (214)
++++++.-+..|.++.+++|+
T Consensus 7 ~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555666666554
No 96
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=24.99 E-value=1.6e+02 Score=19.78 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 52 QYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
|..+.+....+-.++++|+|+.|+.
T Consensus 16 el~ev~~iM~~NI~~vL~RgekLd~ 40 (74)
T 2nps_A 16 QVDEVIDVMQENITKVIERGERLDE 40 (74)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4567777778888889999988886
No 97
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.92 E-value=2.4e+02 Score=21.74 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cC--CcC---hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 028068 50 RSQYIKEATELGKKARELKKAADTLHQEER--SG--SKG---RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (214)
Q Consensus 50 ~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~--~~--~~s---~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~ 117 (214)
+.++.....++.+.++++...-+.++..-. ++ .-+ |--+...+.+.++...+-.++..++..|.+.-.
T Consensus 80 k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K 154 (180)
T 1s94_A 80 KEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCK 154 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677777777777777775221 11 112 122346678999999999999999999887664
No 98
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.99 E-value=1.3e+02 Score=19.27 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
|++...++++.|.-.+...++|+.
T Consensus 13 Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 666677777777777777777775
No 99
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=23.95 E-value=1.7e+02 Score=19.81 Aligned_cols=60 Identities=5% Similarity=0.002 Sum_probs=39.1
Q ss_pred hhhhhhhHHHHhhcccCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHh
Q 028068 27 VGIACLPLGLIFSFIRRP--KAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKW 87 (214)
Q Consensus 27 vGlaaLPi~lI~~f~~Rp--k~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~ 87 (214)
.+|+-+|.+-|+..-.-- .+ +|.+-....+..++.+..++.+..-++-+..+....+..|
T Consensus 2 ~~~s~lp~~~v~~iaes~Gi~~-lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~D 63 (70)
T 1taf_B 2 LYGSSISAESMKVIAESIGVGS-LSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRD 63 (70)
T ss_dssp CCSCCCCHHHHHHHHHHTTCCC-BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred cccccCCHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 357778888877653111 13 7777777788888888888888777776544434444444
No 100
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.94 E-value=1.5e+02 Score=22.47 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=15.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.|.-.+.++.+|...|+.+...+...
T Consensus 32 rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 32 VEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666665555443
No 101
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.75 E-value=1.6e+02 Score=19.30 Aligned_cols=25 Identities=4% Similarity=0.085 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 52 QYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 52 ~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
|..+.+....+-.++++|+|+.|+.
T Consensus 17 ~l~evk~iM~~NI~~vL~RgekLd~ 41 (65)
T 1gl2_A 17 EVEGVKNIMTQNVERILARGENLDH 41 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455666666677777888877775
No 102
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.72 E-value=2.1e+02 Score=20.74 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028068 90 NVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (214)
+.+.++.+--.|+.+.+.+.+.
T Consensus 72 ~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 72 NSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455445555555554443
No 103
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.60 E-value=2e+02 Score=20.37 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028068 50 RSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 50 ~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
.++|.+.+...+.-++.=++..++=+.+-. .....-.++-..|+.++..|+.+...|...+.+
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~--~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQ--HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777666666555555544433332110 011234456666777777777777766665333
No 104
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.27 E-value=2.1e+02 Score=20.43 Aligned_cols=24 Identities=17% Similarity=0.549 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028068 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
.-|+.+.++.....++++.+-++.
T Consensus 58 ~w~eyn~~~~ql~e~~dE~~Sl~~ 81 (96)
T 3q8t_A 58 YQREYSEFKRQQLELDDELKSVEN 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444443
No 105
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.11 E-value=1.9e+02 Score=20.55 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028068 56 EATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 56 ~~~~l~~~~~~l~e~~~~l~~ 76 (214)
++..+.+-.++|.+..+.++.
T Consensus 29 Rr~AL~eaL~EN~~Lh~~ie~ 49 (83)
T 1wlq_A 29 RRKALYEALKENEKLHKEIEQ 49 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566555555555555543
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.91 E-value=2.1e+02 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028068 54 IKEATELGKKARELKKAADTL 74 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l 74 (214)
.+++.++++..++.++..++.
T Consensus 366 ~~~~~~le~~~~~~~~~~~~~ 386 (487)
T 3oja_A 366 EQKKKALDEQVSNGRRAHAEL 386 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345556655555555444333
No 107
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=22.76 E-value=1.9e+02 Score=19.95 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHH
Q 028068 55 KEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEE 103 (214)
Q Consensus 55 ~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~ 103 (214)
+....+.+-..+.++..+..+++.+ ......++++.++++....+
T Consensus 28 ~l~r~lGk~ir~fK~~~~~~~~e~~----~~~~~~el~~~~~~~~~~~~ 72 (78)
T 2l16_A 28 EIGRAAGRTLLEFKSATKSLVSGDE----KEEKSAELTAVKQDKNAGLE 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhh----HHhhHHHHHHHHHHHHHHHH
Confidence 3444455444555555555554321 12233455555555554443
No 108
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=22.63 E-value=49 Score=20.39 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 028068 10 VALATIVGSVLFSIFGGVGI 29 (214)
Q Consensus 10 i~~l~~iG~~lfi~y~gvGl 29 (214)
++.+..+|.++|=-|.|.|-
T Consensus 19 ~~vi~~~giFfyGsYsGlGS 38 (40)
T 3arc_J 19 MGVIVIVGLFFYGAYAGLGS 38 (40)
T ss_dssp HHHHHHHHHHHHHHSSSTTS
T ss_pred hhhhheeeEEEeecccccCC
Confidence 45566677777777777763
No 109
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.45 E-value=1.9e+02 Score=21.49 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQ 76 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~ 76 (214)
++-++..+...++.+-=.+|....+.|+.
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkd 60 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKD 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655566666666665
No 110
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.40 E-value=1.7e+02 Score=24.82 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=22.0
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 83 ~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++.+-+.+++.+++|+..|+++.+++..-
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34556778888888888888888887653
No 111
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=22.33 E-value=7.1 Score=29.29 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHh
Q 028068 63 KARELKKAADTLHQ 76 (214)
Q Consensus 63 ~~~~l~e~~~~l~~ 76 (214)
+..+++++-|.+++
T Consensus 32 e~~~lK~~RR~lKN 45 (107)
T 3a5t_A 32 EIIQLKQRRRTLKN 45 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 33356666666665
No 112
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.20 E-value=2e+02 Score=20.13 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHH
Q 028068 54 IKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDV 105 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~ 105 (214)
.-.|..+-.|.++|--....++.+-. .-+....+++..+..||++.
T Consensus 29 nvvk~DLI~rvdELt~E~e~l~~El~------s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 29 NIVKNDLIAKVDELTCEKDVLQGELE------AVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555566555555555432 22233344444455555443
No 113
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=22.06 E-value=1.9e+02 Score=19.54 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=38.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCcCh-------HhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028068 48 ITRSQYIKEATELGKKARELKKAADTLHQEER------SGSKGR-------KWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~------~~~~s~-------k~rr~l~~l~~~~~~Le~~~~~le~~~~~ 114 (214)
++.+++.....++...++++.+.-..|++.-. +|.-+. +++..++++.+.+....+..+.....|.+
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 87 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQ 87 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777765222 133232 34444445555555544444444444544
Q ss_pred Cc
Q 028068 115 GE 116 (214)
Q Consensus 115 ~~ 116 (214)
.+
T Consensus 88 ~D 89 (98)
T 3gwk_C 88 TD 89 (98)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 114
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.40 E-value=1.4e+02 Score=17.74 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028068 88 RKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
||+-...+++..+|++....|++
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 115
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.24 E-value=2.2e+02 Score=20.02 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028068 59 ELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (214)
Q Consensus 59 ~l~~~~~~l~e~~~~l~~~~~~~~-~s~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (214)
++..|.++.+|...-+|.+-.+-+ .+..-..+.+.++.....|+++.+++...
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555566665544443221100 11122223333333334455555555544
No 116
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=21.01 E-value=1.6e+02 Score=21.33 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=11.9
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 028068 85 RKWRKNVKSVEKELLQLEED 104 (214)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~ 104 (214)
.|-||+++++..|+..+...
T Consensus 59 AKL~Rk~DKl~~ele~l~~~ 78 (94)
T 3vlc_E 59 TKNNRKLDSLDKEINNLKDE 78 (94)
T ss_dssp HHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555443
No 117
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.76 E-value=4.3e+02 Score=23.16 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cC-----------hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 028068 51 SQYIKEATELGKKARELKKAADTLHQEERSGS-KG-----------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKA 118 (214)
Q Consensus 51 ~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s-----------~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~~ 118 (214)
+++.+.+..+..+-+++-+..+.++....... .+ ...+.++..++-.+..|+...+.++....+.|+.
T Consensus 316 ~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 395 (406)
T 4dyl_A 316 DELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHLGPG 395 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455555555555555555555554322111 11 2355677778888888888888888887777764
Q ss_pred c
Q 028068 119 E 119 (214)
Q Consensus 119 ~ 119 (214)
+
T Consensus 396 ~ 396 (406)
T 4dyl_A 396 E 396 (406)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.74 E-value=84 Score=18.67 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028068 58 TELGKKARELKKAADTLHQ 76 (214)
Q Consensus 58 ~~l~~~~~~l~e~~~~l~~ 76 (214)
+++++++++|+.....|++
T Consensus 4 nQLEdkVEeLl~~~~~Le~ 22 (34)
T 2hy6_A 4 KQLADAVEELASANYHLAN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHH
Confidence 4566666666665555553
No 119
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=20.39 E-value=51 Score=22.46 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=11.2
Q ss_pred hHhHHHHHHHHHHH
Q 028068 85 RKWRKNVKSVEKEL 98 (214)
Q Consensus 85 ~k~rr~l~~l~~~~ 98 (214)
..||||..++++|-
T Consensus 26 i~DrrEyakFE~Er 39 (67)
T 1s4x_A 26 IHDRKEFAKFEEER 39 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 57999999987764
No 120
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=20.33 E-value=87 Score=25.83 Aligned_cols=26 Identities=8% Similarity=0.305 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 028068 7 EYVVALATIVGSVLFSIFGGVGIACL 32 (214)
Q Consensus 7 ~f~i~~l~~iG~~lfi~y~gvGlaaL 32 (214)
.|.++++.+.|.++..+++|+=..++
T Consensus 214 ~~f~~~~~i~~~~~lnl~~aii~~~f 239 (285)
T 3rvy_A 214 VFFIPFIFVVTFVMINLVVAICVDAM 239 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666644443
No 121
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=20.21 E-value=2.7e+02 Score=22.85 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028068 54 IKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (214)
Q Consensus 54 ~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (214)
..-+..|.+|-+++.+--+.-++-.+-..++.||-.++.+.++++..-.++++.+..
T Consensus 130 ~~i~k~I~KR~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~lN~ 186 (243)
T 4a3a_A 130 PDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNV 186 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777776654433321110111124545555544444444444444333
No 122
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.18 E-value=69 Score=23.70 Aligned_cols=12 Identities=0% Similarity=0.138 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 028068 90 NVKSVEKELLQL 101 (214)
Q Consensus 90 ~l~~l~~~~~~L 101 (214)
+++.|+..+.+|
T Consensus 78 EI~eL~~rV~dl 89 (106)
T 1j1d_B 78 EINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 344444444333
No 123
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=20.02 E-value=1.2e+02 Score=23.29 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=9.3
Q ss_pred cCHHHHHHHHHHHHHHHHHH
Q 028068 48 ITRSQYIKEATELGKKAREL 67 (214)
Q Consensus 48 is~~~~~~~~~~l~~~~~~l 67 (214)
||++-=...++-+-.+|.+.
T Consensus 11 mt~~Rk~~Lk~lll~kA~e~ 30 (133)
T 1j1d_C 11 ISASRKLQLKTLLLQIAKQE 30 (133)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 66665444444443333333
Done!