BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028069
         (214 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5UEH4|RIMK_HAEIG Ribosomal protein S6 modification protein OS=Haemophilus influenzae
           (strain PittGG) GN=rimK PE=3 SV=1
          Length = 302

 Score = 32.3 bits (72), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 53  HVVSAAKKLSSRTGRFDSKNRRG-NTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFEN 111
            VV+  +++  + G F +   RG  T  IT ++E+K+   Q T  IG D   ++  + +N
Sbjct: 203 QVVATMQRIG-QNGEFRANCHRGGKTEKITLSDEEKQIAIQATKAIGLDVAGVDLIRSKN 261

Query: 112 AGVIVGVDGSPMPEL 126
             +++ V+ SP  E+
Sbjct: 262 GLLVLEVNASPGLEM 276


>sp|Q6CWK2|ATG13_KLULA Autophagy-related protein 13 OS=Kluyveromyces lactis (strain ATCC
           8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
           WM37) GN=ATG13 PE=3 SV=1
          Length = 684

 Score = 32.0 bits (71), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 61  LSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQ 92
           L SRTG     NRRG+ G + TT ED K+ +Q
Sbjct: 526 LLSRTGSNVDINRRGSVGTMETTNEDSKEDEQ 557


>sp|Q0IHW3|SMAG1_XENTR Protein Smaug homolog 1 OS=Xenopus tropicalis GN=samd4a PE=2 SV=1
          Length = 712

 Score = 30.8 bits (68), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 46  RAPFRTLH--VVSAAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTN 103
           R P + LH  +++  K  S +    +  NR  ++       E++  + + +A  G    +
Sbjct: 401 RVPLQELHQMILTPIKTYSPQNSNTEEHNREADSQPTLLVAENQASESKDSASAGIQQHH 460

Query: 104 INNNKFENAGVIVGVDGSPMPE--LPG 128
           I+N + E+ GV       P+PE  LPG
Sbjct: 461 ISNCETESGGV-------PLPEGDLPG 480


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.130    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,850,645
Number of Sequences: 539616
Number of extensions: 3463963
Number of successful extensions: 7077
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7064
Number of HSP's gapped (non-prelim): 26
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)