Query 028069
Match_columns 214
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 05:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02326 YMF19: Plant ATP synt 71.5 2.9 6.3E-05 31.6 1.9 26 137-162 1-26 (86)
2 PHA00736 hypothetical protein 70.3 3.5 7.6E-05 31.8 2.1 20 145-164 54-73 (79)
3 PF04971 Lysis_S: Lysis protei 63.4 5.2 0.00011 30.2 1.8 26 132-163 26-51 (68)
4 MTH00169 ATP8 ATP synthase F0 53.7 18 0.00039 26.5 3.2 23 137-159 2-24 (67)
5 PF13572 DUF4134: Domain of un 49.0 4.9 0.00011 31.4 -0.3 35 144-178 42-76 (98)
6 PF11770 GAPT: GRB2-binding ad 45.0 23 0.0005 30.5 3.0 36 154-189 18-80 (158)
7 PF06645 SPC12: Microsomal sig 44.8 22 0.00048 26.2 2.6 32 148-179 39-70 (76)
8 PRK14749 hypothetical protein; 39.7 19 0.00041 23.7 1.4 13 148-160 4-16 (30)
9 TIGR02106 cyd_oper_ybgT cyd op 38.7 20 0.00044 23.4 1.3 11 148-158 4-14 (30)
10 PF08173 YbgT_YccB: Membrane b 37.8 21 0.00046 22.9 1.3 11 148-158 4-14 (28)
11 PF06679 DUF1180: Protein of u 37.8 9.5 0.00021 32.3 -0.3 51 151-205 100-159 (163)
12 PF12270 Cyt_c_ox_IV: Cytochro 36.9 28 0.00061 29.0 2.3 28 145-172 107-134 (137)
13 PF11373 DUF3175: Protein of u 30.0 11 0.00024 29.7 -1.1 27 187-213 3-32 (86)
14 PF10463 Peptidase_U49: Peptid 28.2 42 0.0009 29.3 2.0 13 145-157 7-19 (206)
15 PRK06569 F0F1 ATP synthase sub 25.9 61 0.0013 27.3 2.5 25 137-161 2-29 (155)
16 COG3763 Uncharacterized protei 22.2 53 0.0011 25.1 1.3 17 148-164 4-20 (71)
17 MTH00025 ATP8 ATP synthase F0 22.0 1.1E+02 0.0025 22.8 3.1 22 137-158 2-23 (70)
18 PRK09697 protein secretion pro 20.2 2.2E+02 0.0047 24.1 4.7 53 130-186 16-78 (139)
19 PF06783 UPF0239: Uncharacteri 20.2 2.2E+02 0.0048 22.4 4.4 27 141-168 17-43 (85)
20 COG5035 CDC50 Cell cycle contr 20.1 1.1E+02 0.0023 29.6 3.2 24 144-167 44-67 (372)
No 1
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=71.54 E-value=2.9 Score=31.59 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhce
Q 028069 137 PQWGAFGFFLQYLWAFGIVFALVACG 162 (214)
Q Consensus 137 pQWd~lGffvqylwafGV~faliacg 162 (214)
||-|.+=||-||.|.+.+++.+....
T Consensus 1 PQLD~~tf~sQ~fW~~i~f~~~y~~~ 26 (86)
T PF02326_consen 1 PQLDIVTFFSQYFWLLIFFFFFYIFL 26 (86)
T ss_pred CCCceeeHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999888865433
No 2
>PHA00736 hypothetical protein
Probab=70.27 E-value=3.5 Score=31.79 Aligned_cols=20 Identities=30% Similarity=0.768 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhceeE
Q 028069 145 FLQYLWAFGIVFALVACGIA 164 (214)
Q Consensus 145 fvqylwafGV~faliacg~a 164 (214)
|+...|.++|.|+|||+.+.
T Consensus 54 flplfwgi~vifgliag~vl 73 (79)
T PHA00736 54 FLPLFWGITVIFGLIAGLVL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 77888999999999998764
No 3
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=63.45 E-value=5.2 Score=30.18 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=20.0
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHhhcee
Q 028069 132 DFWEGPQWGAFGFFLQYLWAFGIVFALVACGI 163 (214)
Q Consensus 132 DFWEGpQWd~lGffvqylwafGV~faliacg~ 163 (214)
|..-..||.++|++ .||+|+|+.|++
T Consensus 26 d~~sp~qW~aIGvi------~gi~~~~lt~lt 51 (68)
T PF04971_consen 26 DQFSPSQWAAIGVI------GGIFFGLLTYLT 51 (68)
T ss_pred hccCcccchhHHHH------HHHHHHHHHHHh
Confidence 55677899999974 578888887765
No 4
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=53.75 E-value=18 Score=26.54 Aligned_cols=23 Identities=35% Similarity=0.808 Sum_probs=19.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHh
Q 028069 137 PQWGAFGFFLQYLWAFGIVFALV 159 (214)
Q Consensus 137 pQWd~lGffvqylwafGV~fali 159 (214)
||-|..-|+-||.|.+.+++.+.
T Consensus 2 PQLd~~~f~sQ~~Wl~i~f~~ly 24 (67)
T MTH00169 2 PQLDSVTYLTQYIWTLIILFFLF 24 (67)
T ss_pred CCCchHHHHHHHHHHHHHHHHHH
Confidence 78899999999999988877763
No 5
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=49.02 E-value=4.9 Score=31.37 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhceeEEEeecCCccCCCCC
Q 028069 144 FFLQYLWAFGIVFALVACGIAVATYNEGATDFKET 178 (214)
Q Consensus 144 ffvqylwafGV~faliacg~a~~TYnegatdFret 178 (214)
.+..+++++|-+++||+.+=...-+|.|..|.++.
T Consensus 42 ~~~~l~yaI~aVvglIGai~VY~k~~~Gd~dv~k~ 76 (98)
T PF13572_consen 42 PVTKLMYAIGAVVGLIGAIRVYIKWNNGDQDVKKS 76 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHH
Confidence 36788999999999999999999999999887654
No 6
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=44.96 E-value=23 Score=30.50 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=24.9
Q ss_pred HHHHHhhceeEEEee-cC-----------------CccCCCCCh---------hhhhhhhhcc
Q 028069 154 IVFALVACGIAVATY-NE-----------------GATDFKETP---------AYKESVQSRD 189 (214)
Q Consensus 154 V~faliacg~a~~TY-ne-----------------gatdFretp---------~~kesvqsqe 189 (214)
.+|-|+.||+.|+-| |- ..+|+.+|+ .+|.|||+|+
T Consensus 18 Ll~lLl~cgiGcvwhwkhr~~~~ftLPkflqRRssk~kDytkt~~~~~~~i~~r~k~svq~~d 80 (158)
T PF11770_consen 18 LLLLLLLCGIGCVWHWKHRDSTRFTLPKFLQRRSSKRKDYTKTPSLSPEVIGPRHKISVQTKD 80 (158)
T ss_pred HHHHHHHHhcceEEEeeccCccccchHHHHHhhhhhccccccCcCCCcccccccccccccccc
Confidence 345567888888777 22 346777777 6788888774
No 7
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=44.79 E-value=22 Score=26.22 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhceeEEEeecCCccCCCCCh
Q 028069 148 YLWAFGIVFALVACGIAVATYNEGATDFKETP 179 (214)
Q Consensus 148 ylwafGV~faliacg~a~~TYnegatdFretp 179 (214)
|.+++|++++++.|+=.-.-||..+-.+.+..
T Consensus 39 ~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~ 70 (76)
T PF06645_consen 39 YIYGAGVVLTLLVVVPPWPFYNRHPLKWLPPK 70 (76)
T ss_pred HHHHHHHHHHHhheeCCcHhhcCCcccCCCCC
Confidence 55677777777777666677887766655443
No 8
>PRK14749 hypothetical protein; Provisional
Probab=39.66 E-value=19 Score=23.69 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhh
Q 028069 148 YLWAFGIVFALVA 160 (214)
Q Consensus 148 ylwafGV~falia 160 (214)
+.|++|+.+|...
T Consensus 4 faWiLG~~lAc~f 16 (30)
T PRK14749 4 LLWFVGILLMCSL 16 (30)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999988543
No 9
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=38.69 E-value=20 Score=23.40 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q 028069 148 YLWAFGIVFAL 158 (214)
Q Consensus 148 ylwafGV~fal 158 (214)
+.|++|+.+|+
T Consensus 4 faWilG~~lA~ 14 (30)
T TIGR02106 4 FAWILGTLLAC 14 (30)
T ss_pred HHHHHHHHHHH
Confidence 57999999985
No 10
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=37.80 E-value=21 Score=22.90 Aligned_cols=11 Identities=27% Similarity=1.020 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH
Q 028069 148 YLWAFGIVFAL 158 (214)
Q Consensus 148 ylwafGV~fal 158 (214)
+.|++|+.+|+
T Consensus 4 faWilG~~lA~ 14 (28)
T PF08173_consen 4 FAWILGVLLAC 14 (28)
T ss_pred HHHHHHHHHHH
Confidence 57999999985
No 11
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=37.78 E-value=9.5 Score=32.26 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=24.4
Q ss_pred HHHHHHHH-hhceeEEEeecCCccCCCCChhhhhhhhh-----cc---ccCCCCCCCCCccCCC
Q 028069 151 AFGIVFAL-VACGIAVATYNEGATDFKETPAYKESVQS-----RD---LLEGPDASNSDVFESN 205 (214)
Q Consensus 151 afGV~fal-iacg~a~~TYnegatdFretp~~kesvqs-----qe---~~eepe~s~SdVFesN 205 (214)
+|+.+.++ |+|+ ++.+|-.+- |+-..+||-|+. +| |.++.|..|+.|||.|
T Consensus 100 Vl~g~s~l~i~yf-vir~~R~r~---~~rktRkYgvl~~~~~~~Em~pL~~ddedeD~TvFd~~ 159 (163)
T PF06679_consen 100 VLVGLSALAILYF-VIRTFRLRR---RNRKTRKYGVLTTRAENVEMAPLEEDDEDEDSTVFDAN 159 (163)
T ss_pred HHHHHHHHHHHHH-HHHHHhhcc---ccccceeecccCCCcccceecccCCCccccccceeeec
Confidence 33333333 3444 345554443 223345665553 22 3333444555699976
No 12
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=36.88 E-value=28 Score=28.97 Aligned_cols=28 Identities=32% Similarity=0.333 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhceeEEEeecCCc
Q 028069 145 FLQYLWAFGIVFALVACGIAVATYNEGA 172 (214)
Q Consensus 145 fvqylwafGV~faliacg~a~~TYnega 172 (214)
|..+|.++|+++.++++.-.+.-|..|.
T Consensus 107 ~g~Wl~~iG~~~~i~~~~G~vfEy~rg~ 134 (137)
T PF12270_consen 107 FGWWLILIGAVLLIVAVVGWVFEYYRGP 134 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeccCc
Confidence 5568888899999888888888888775
No 13
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=30.00 E-value=11 Score=29.71 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=21.9
Q ss_pred hccccCCCCC--CCCCccC-CCCcccCCCC
Q 028069 187 SRDLLEGPDA--SNSDVFE-SNPTEVAPSL 213 (214)
Q Consensus 187 sqe~~eepe~--s~SdVFe-sNPTEvAPsL 213 (214)
||++-+.+++ -+.+||. ++|.++|-||
T Consensus 3 S~~Vt~~Sdaldle~~vF~~~dp~~IA~SL 32 (86)
T PF11373_consen 3 SQKVTEHSDALDLEPGVFKSDDPKKIAASL 32 (86)
T ss_pred ccccCccCCcCCCCccccCCCCHHHHHHHH
Confidence 6778888887 5569999 7899998776
No 14
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=28.17 E-value=42 Score=29.28 Aligned_cols=13 Identities=54% Similarity=1.196 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q 028069 145 FLQYLWAFGIVFA 157 (214)
Q Consensus 145 fvqylwafGV~fa 157 (214)
++||||+||..+=
T Consensus 7 ~L~~lW~f~~~~~ 19 (206)
T PF10463_consen 7 FLEYLWIFGFAAW 19 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 7899999998764
No 15
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=25.90 E-value=61 Score=27.25 Aligned_cols=25 Identities=28% Similarity=0.794 Sum_probs=17.5
Q ss_pred CCcchhHHHHHHHH---HHHHHHHHhhc
Q 028069 137 PQWGAFGFFLQYLW---AFGIVFALVAC 161 (214)
Q Consensus 137 pQWd~lGffvqylw---afGV~faliac 161 (214)
||-|..-|+.|++| .|+|++.|+..
T Consensus 2 PQfd~~~~~sqifw~iI~FlILy~ll~k 29 (155)
T PRK06569 2 PQFDIATYYSQIFWLIVTFGLLYIFVYK 29 (155)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 78888888889888 45555555444
No 16
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.18 E-value=53 Score=25.15 Aligned_cols=17 Identities=41% Similarity=0.382 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhceeE
Q 028069 148 YLWAFGIVFALVACGIA 164 (214)
Q Consensus 148 ylwafGV~faliacg~a 164 (214)
+||+++|+++|+++.+.
T Consensus 4 ~lail~ivl~ll~G~~~ 20 (71)
T COG3763 4 WLAILLIVLALLAGLIG 20 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777777665543
No 17
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=22.00 E-value=1.1e+02 Score=22.83 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=18.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHH
Q 028069 137 PQWGAFGFFLQYLWAFGIVFAL 158 (214)
Q Consensus 137 pQWd~lGffvqylwafGV~fal 158 (214)
||=|..=|.-||.|.+-+++.+
T Consensus 2 PQLd~~~f~nQi~W~~i~f~il 23 (70)
T MTH00025 2 PQLDTTTYLTQYRWTLIVLFLL 23 (70)
T ss_pred CCcchhHhHHHHHHHHHHHHHH
Confidence 6788888999999988777665
No 18
>PRK09697 protein secretion protein GspB; Provisional
Probab=20.17 E-value=2.2e+02 Score=24.11 Aligned_cols=53 Identities=26% Similarity=0.380 Sum_probs=33.8
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHhhceeEEEee----------cCCccCCCCChhhhhhhh
Q 028069 130 EPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATY----------NEGATDFKETPAYKESVQ 186 (214)
Q Consensus 130 ePDFWEGpQWd~lGffvqylwafGV~faliacg~a~~TY----------negatdFretp~~kesvq 186 (214)
+|..|..-.=..+||.+|++-+. ..| |+.+.+.-| .+..+.--++|+||.+.|
T Consensus 16 ~~~~~~~~~~~TI~~Vi~L~~~~-L~~---AG~~~~GGYA~Qlwvlw~~k~~~T~~~~tP~~~Qs~q 78 (139)
T PRK09697 16 HPGIFSRQKHSTIIYVICLLLIC-LWF---AGMVLVGGYARQLWVLWIVKAEVTVEAETPAFKQSTQ 78 (139)
T ss_pred CcchhhhhhccchHHHHHHHHHH-HHH---hcceeechhHHHHHHHHHHhhhheecCCCcchhhhhh
Confidence 46678777788999999975221 111 112222222 456677889999999866
No 19
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=20.16 E-value=2.2e+02 Score=22.38 Aligned_cols=27 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhceeEEEee
Q 028069 141 AFGFFLQYLWAFGIVFALVACGIAVATY 168 (214)
Q Consensus 141 ~lGffvqylwafGV~faliacg~a~~TY 168 (214)
++.-++.|---+|-+|=|| |+.||+.+
T Consensus 17 ~~e~llRYGLf~GAIFQli-CilAiI~~ 43 (85)
T PF06783_consen 17 FFENLLRYGLFVGAIFQLI-CILAIILP 43 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHheeee
Confidence 4567899988999988865 66666655
No 20
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=20.14 E-value=1.1e+02 Score=29.56 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhceeEEEe
Q 028069 144 FFLQYLWAFGIVFALVACGIAVAT 167 (214)
Q Consensus 144 ffvqylwafGV~faliacg~a~~T 167 (214)
-++.++.++|++|+.++.|+.+++
T Consensus 44 ~vLpL~flig~vf~plG~gl~~~~ 67 (372)
T COG5035 44 TVLPLLFLIGIVFAPLGGGLLVAS 67 (372)
T ss_pred HHHHHHHHHHHHHhhccceEEEEe
Confidence 367888999999999998887654
Done!