Query 028069
Match_columns 214
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 08:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028069.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028069hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlja3 c.26.3.1 (A:295-402) U 22.0 16 0.0011 24.7 1.3 21 162-182 19-39 (108)
2 d2dpwa1 c.68.1.19 (A:1-231) Un 16.9 27 0.002 24.6 1.7 18 53-71 5-22 (231)
3 d1iqoa_ d.214.1.1 (A:) Hypothe 13.6 69 0.005 22.5 3.1 36 159-194 3-38 (88)
4 d1mv8a3 c.26.3.1 (A:301-436) G 13.5 32 0.0023 23.3 1.2 21 162-182 17-37 (136)
5 d1e5ka_ c.68.1.8 (A:) Molybden 9.5 59 0.0043 21.6 1.5 11 58-68 10-20 (188)
6 d1s9ja_ d.144.1.7 (A:) Dual sp 8.3 74 0.0054 23.8 1.8 29 131-163 172-200 (322)
7 d1f4pa_ c.23.5.1 (A:) Flavodox 7.6 1.3E+02 0.0094 20.2 2.7 29 161-189 52-81 (147)
8 d1ua2a_ d.144.1.7 (A:) Cell di 7.3 88 0.0064 22.7 1.8 16 149-164 184-199 (299)
9 d2gfsa1 d.144.1.7 (A:5-352) MA 7.3 89 0.0065 23.0 1.8 16 149-164 202-217 (348)
10 d1rjba_ d.144.1.7 (A:) Fl cyto 7.1 88 0.0064 23.4 1.7 42 148-195 248-290 (325)
No 1
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=21.97 E-value=16 Score=24.72 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=17.7
Q ss_pred eeEEEeecCCccCCCCChhhh
Q 028069 162 GIAVATYNEGATDFKETPAYK 182 (214)
Q Consensus 162 g~a~~TYnegatdFretp~~k 182 (214)
|+.=.||.++-.|+||+|++.
T Consensus 19 ~ilGl~fK~n~dD~R~Sp~i~ 39 (108)
T d1dlja3 19 GVYRLIMKSNSDNFRESAIKD 39 (108)
T ss_dssp EEECCCSSTTCSCCTTCHHHH
T ss_pred EEEEEEECCCCcchhhhhHHH
Confidence 455679999999999999964
No 2
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}
Probab=16.91 E-value=27 Score=24.55 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=12.1
Q ss_pred eeeeccccccccccccCcC
Q 028069 53 HVVSAAKKLSSRTGRFDSK 71 (214)
Q Consensus 53 Hvv~a~kk~ssrtgRfdsK 71 (214)
=|++|+ +-|+|-.|++.+
T Consensus 5 avIlA~-G~~~r~~r~g~~ 22 (231)
T d2dpwa1 5 AIVLAG-GKEAWAERFGVG 22 (231)
T ss_dssp EEEECC-CBCSGGGTTTCS
T ss_pred EEEECC-CCCCCCCCCCCC
Confidence 356644 559899888754
No 3
>d1iqoa_ d.214.1.1 (A:) Hypothetical protein MTH1880 {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=13.57 E-value=69 Score=22.49 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.0
Q ss_pred hhceeEEEeecCCccCCCCChhhhhhhhhccccCCC
Q 028069 159 VACGIAVATYNEGATDFKETPAYKESVQSRDLLEGP 194 (214)
Q Consensus 159 iacg~a~~TYnegatdFretp~~kesvqsqe~~eep 194 (214)
||-++-++||++=..+++..-.||-++.-++|-+.+
T Consensus 3 iA~L~gi~~~~eL~ee~~~~v~~kA~~~~~~L~d~~ 38 (88)
T d1iqoa_ 3 IATLKGIFTLKDLPEEFRPFVDYKAGLEKKKLSDDD 38 (88)
T ss_dssp CCCEEEEECSTTCSTTTCCSTHHHHTTTTCCCSSCC
T ss_pred eEEEEEEEEHHHcchhhhhheEeeeecchhcCCCCC
Confidence 677888999999999999999999999888775443
No 4
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.49 E-value=32 Score=23.31 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=17.5
Q ss_pred eeEEEeecCCccCCCCChhhh
Q 028069 162 GIAVATYNEGATDFKETPAYK 182 (214)
Q Consensus 162 g~a~~TYnegatdFretp~~k 182 (214)
++.=.+|.++-.|+|++|++.
T Consensus 17 ~ilGlafK~~t~D~R~Sps~~ 37 (136)
T d1mv8a3 17 GLLGLSFKAGTDDLRESPLVE 37 (136)
T ss_dssp EEECCSSSTTCCCCTTCHHHH
T ss_pred EEEEEEECCCCcchhcCHHHH
Confidence 344578999999999999975
No 5
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}
Probab=9.48 E-value=59 Score=21.59 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=9.0
Q ss_pred ccccccccccc
Q 028069 58 AKKLSSRTGRF 68 (214)
Q Consensus 58 ~kk~ssrtgRf 68 (214)
|++.|||.|+.
T Consensus 10 AgG~ssRmG~~ 20 (188)
T d1e5ka_ 10 AGGKARRMGGV 20 (188)
T ss_dssp CCCCCSSSCSS
T ss_pred cCCCCcCCCCC
Confidence 88889999864
No 6
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.32 E-value=74 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.587 Sum_probs=19.1
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHhhcee
Q 028069 131 PDFWEGPQWGAFGFFLQYLWAFGIVFALVACGI 163 (214)
Q Consensus 131 PDFWEGpQWd~lGffvqylwafGV~faliacg~ 163 (214)
|..+.|.+++.- -=+|++||++.-+.+|-
T Consensus 172 PEvl~~~~y~~~----~DiWSlGvil~ell~G~ 200 (322)
T d1s9ja_ 172 PERLQGTHYSVQ----SDIWSMGLSLVEMAVGR 200 (322)
T ss_dssp HHHHHCSCCCTT----HHHHHHHHHHHHHHHSS
T ss_pred chHHcCCCCCcH----HHHHHHHHHHHHHHHCC
Confidence 555555554421 23799999999877764
No 7
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}
Probab=7.63 E-value=1.3e+02 Score=20.20 Aligned_cols=29 Identities=7% Similarity=0.219 Sum_probs=16.7
Q ss_pred ceeEEEeecCCccCC-CCChhhhhhhhhcc
Q 028069 161 CGIAVATYNEGATDF-KETPAYKESVQSRD 189 (214)
Q Consensus 161 cg~a~~TYnegatdF-retp~~kesvqsqe 189 (214)
+++.+.||+.|+-+. .+--.|.+.++..+
T Consensus 52 vii~~sT~g~g~~~~~~~~~~f~~~l~~~~ 81 (147)
T d1f4pa_ 52 VLLGCSTWGDDSIELQDDFIPLFDSLEETG 81 (147)
T ss_dssp EEEEECEECSSSCEECTTTHHHHHTGGGSC
T ss_pred EEEEecccCCcCCChhhhHHHhhhcccccc
Confidence 466788999885442 22334555555443
No 8
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.34 E-value=88 Score=22.70 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhceeE
Q 028069 149 LWAFGIVFALVACGIA 164 (214)
Q Consensus 149 lwafGV~faliacg~a 164 (214)
+|++||++.-+.+|..
T Consensus 184 iwSlGvil~el~~g~~ 199 (299)
T d1ua2a_ 184 MWAVGCILAELLLRVP 199 (299)
T ss_dssp HHHHHHHHHHHHHSSC
T ss_pred hhhcchHHHHHHhCcC
Confidence 6999999998877753
No 9
>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.27 E-value=89 Score=23.00 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhceeE
Q 028069 149 LWAFGIVFALVACGIA 164 (214)
Q Consensus 149 lwafGV~faliacg~a 164 (214)
+|++|+++.-+.+|-.
T Consensus 202 iwSlGv~l~~ll~g~~ 217 (348)
T d2gfsa1 202 IWSVGCIMAELLTGRT 217 (348)
T ss_dssp HHHHHHHHHHHHHSSC
T ss_pred hhhhhHHHHHHHhCCC
Confidence 6999999987777653
No 10
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.07 E-value=88 Score=23.38 Aligned_cols=42 Identities=17% Similarity=0.442 Sum_probs=22.3
Q ss_pred HHHHHHHHHH-HhhceeEEEeecCCccCCCCChhhhhhhhhccccCCCC
Q 028069 148 YLWAFGIVFA-LVACGIAVATYNEGATDFKETPAYKESVQSRDLLEGPD 195 (214)
Q Consensus 148 ylwafGV~fa-liacg~a~~TYnegatdFretp~~kesvqsqe~~eepe 195 (214)
=+|+|||++- ++++|..- | .+......+.+.++...-++.|+
T Consensus 248 DiwS~Gvil~emlt~g~~P--f----~~~~~~~~~~~~~~~~~~~~~p~ 290 (325)
T d1rjba_ 248 DVWSYGILLWEIFSLGVNP--Y----PGIPVDANFYKLIQNGFKMDQPF 290 (325)
T ss_dssp HHHHHHHHHHHHTTTSCCS--S----TTCCCSHHHHHHHHTTCCCCCCT
T ss_pred eccchhHHHHHHHhCCCCC--C----CCCCHHHHHHHHHhcCCCCCCCC
Confidence 3799999988 45555431 1 12223344555555544344443
Done!