BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028071
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40379|REC16_SCHPO Transcriptional activator protein rec16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rec16 PE=4 SV=1
Length = 472
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 97 IKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAKISADKTTALNMTVTIL 146
I N NK + +K +YR D G+ P+ + K+TAL++T + L
Sbjct: 104 INNRNKRKINRQKSRLQGLYRSDANGLQPLNSENVKMKKSTALSLTSSPL 153
>sp|B0KHX7|RBFA_PSEPG Ribosome-binding factor A OS=Pseudomonas putida (strain GB-1)
GN=rbfA PE=3 SV=1
Length = 132
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 58 KAKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADI--- 114
+ KDP+ + +IT DVS L A++ + + +G + P+ V LK N+
Sbjct: 26 EVKDPRVGLVTITAVDVSRDLGHAKVFITV-------MGEETPDAVQQSLKALNSAASFL 78
Query: 115 -MYRGDTVGVVPIPVAKISADKTTALNMTVTILANRFLSNPQLFSDA 160
++ G ++ + +P D++ + + ++ L R ++ +L DA
Sbjct: 79 RLHLGRSMQLRSVPQLHFHFDESVSRGVHLSALIERAVAEDRLHKDA 125
>sp|Q88DV8|RBFA_PSEPK Ribosome-binding factor A OS=Pseudomonas putida (strain KT2440)
GN=rbfA PE=3 SV=1
Length = 132
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 58 KAKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADI--- 114
+ KDP+ + +IT DVS L A++ + + +G + P+ V LK N+
Sbjct: 26 EVKDPRVGLVTITAVDVSRDLGHAKVFITV-------MGEETPDAVQQSLKALNSAASFL 78
Query: 115 -MYRGDTVGVVPIPVAKISADKTTALNMTVTILANRFLSNPQLFSDA 160
++ G ++ + +P D++ + + ++ L R ++ +L DA
Sbjct: 79 RLHLGRSMQLRSVPQLHFHFDESVSRGVHLSALIERAVAEDRLHKDA 125
>sp|A5W986|RBFA_PSEP1 Ribosome-binding factor A OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=rbfA PE=3 SV=1
Length = 132
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 58 KAKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADI--- 114
+ KDP+ + +IT DVS L A++ + + +G + P+ V LK N+
Sbjct: 26 EVKDPRVGLVTITAVDVSRDLGHAKVFITV-------MGEETPDAVQQSLKALNSAASFL 78
Query: 115 -MYRGDTVGVVPIPVAKISADKTTALNMTVTILANRFLSNPQLFSDA 160
++ G ++ + +P D++ + + ++ L R ++ +L DA
Sbjct: 79 RLHLGRSMQLRSVPQLHFHFDESVSRGVHLSALIERAVAEDRLHKDA 125
>sp|Q920G3|SIGL5_MOUSE Sialic acid-binding Ig-like lectin 5 OS=Mus musculus GN=Siglec5
PE=2 SV=1
Length = 569
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 20 PKPPKSGRSHRKRNICIGI-----LVSIVAIVLLIVILALTVFK---------------A 59
PK ++G+S R +G L++++A+ L ++ + V + A
Sbjct: 423 PKVSQAGKSETSRGTVLGAIWGAGLMALLAVCLCLIFFTVKVLRKKSALKVAATKGNHLA 482
Query: 60 KDPKTTINSITVQDVSIAL 78
K+P +TINS ++ +IAL
Sbjct: 483 KNPASTINSASITSSNIAL 501
>sp|B2VGW1|AAEA_ERWT9 p-hydroxybenzoic acid efflux pump subunit AaeA OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=aaeA PE=3
SV=1
Length = 310
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 32 RNICIGILVSIVAIVLLIVILALTVFKAKDPKTTINSITVQDVSIALD------SARMRV 85
R I ++ ++ I+ +++I + VF + P T T V+IA D R+R
Sbjct: 6 RKISRTVITLLLVIIAIVLIFRIWVFYTESPWTRDAKFTADVVAIAPDVSGLISEVRVRD 65
Query: 86 NLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVG 122
N + D + +P + L + AD+ Y +G
Sbjct: 66 NQLVQKDQVLFTIDPPRYQKALDEAQADVAYYQAVMG 102
>sp|Q49W89|MNHC1_STAS1 Na(+)/H(+) antiporter subunit C1 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=mnhC1 PE=3 SV=1
Length = 115
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 69 ITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMK-LKKGNADIMYRGDTVGVVPIP 127
+T V + L + +R+ + TL + N ++M LKKG I +G T V PIP
Sbjct: 12 LTAMSVYLILSKSLIRIIIGTTLQTHTA--NLFLITMGGLKKGEVPIYEKGITSYVDPIP 69
Query: 128 VAKISADKTTALNMTVTILANRFLSNPQLFSD 159
A I + ++T L F S +L +D
Sbjct: 70 QALILTAIVISFSVTAFFLVLAFRSYKELGTD 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,600,029
Number of Sequences: 539616
Number of extensions: 2511512
Number of successful extensions: 8133
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8113
Number of HSP's gapped (non-prelim): 42
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)