Query 028071
Match_columns 214
No_of_seqs 127 out of 762
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 2.4E-49 5.2E-54 328.5 28.4 212 2-214 4-219 (219)
2 PF03168 LEA_2: Late embryogen 99.5 8.2E-14 1.8E-18 101.1 8.4 97 94-193 1-100 (101)
3 smart00769 WHy Water Stress an 98.9 2.1E-08 4.5E-13 73.4 9.7 85 85-172 11-97 (100)
4 PF07092 DUF1356: Protein of u 98.6 2.6E-05 5.7E-10 65.1 19.8 85 57-145 96-181 (238)
5 COG5608 LEA14-like dessication 97.8 0.0023 5E-08 49.9 15.3 106 59-178 30-137 (161)
6 PF12751 Vac7: Vacuolar segreg 97.8 0.00016 3.4E-09 64.3 8.9 60 56-123 323-382 (387)
7 PLN03160 uncharacterized prote 94.4 1.5 3.2E-05 36.5 12.7 47 26-72 33-82 (219)
8 PF06072 Herpes_US9: Alphaherp 87.3 0.029 6.3E-07 36.7 -3.7 18 24-41 24-41 (60)
9 PF04478 Mid2: Mid2 like cell 83.8 1.5 3.3E-05 34.4 3.7 19 46-64 64-82 (154)
10 PF14927 Neurensin: Neurensin 80.9 2.1 4.5E-05 33.2 3.4 29 35-65 47-75 (140)
11 TIGR02588 conserved hypothetic 68.7 14 0.0003 28.0 5.0 38 52-101 24-61 (122)
12 PRK12785 fliL flagellar basal 67.1 53 0.0012 26.0 8.5 17 105-121 86-102 (166)
13 PRK05529 cell division protein 64.8 9.1 0.0002 32.5 3.9 15 61-75 58-72 (255)
14 PF11395 DUF2873: Protein of u 62.8 2.3 5.1E-05 25.2 -0.1 18 42-59 17-34 (43)
15 PF09624 DUF2393: Protein of u 61.6 48 0.001 25.4 7.2 34 90-123 63-96 (149)
16 PRK10893 lipopolysaccharide ex 61.0 89 0.0019 25.4 9.6 20 58-77 37-56 (192)
17 PF04790 Sarcoglycan_1: Sarcog 60.3 4.2 9.1E-05 34.9 1.0 14 28-41 9-22 (264)
18 PF14283 DUF4366: Domain of un 59.8 15 0.00032 30.7 4.1 12 53-64 179-190 (218)
19 PF11837 DUF3357: Domain of un 59.0 3.1 6.8E-05 30.6 0.0 14 28-41 23-36 (106)
20 PF09307 MHC2-interact: CLIP, 58.1 3.3 7.2E-05 30.9 0.0 33 27-60 23-59 (114)
21 PF05473 Herpes_UL45: UL45 pro 54.1 14 0.00031 30.2 3.2 15 3-17 5-19 (200)
22 PF00927 Transglut_C: Transglu 53.5 76 0.0016 22.6 6.7 60 85-144 11-75 (107)
23 PF14155 DUF4307: Domain of un 53.4 89 0.0019 23.0 11.7 15 114-128 70-86 (112)
24 COG1580 FliL Flagellar basal b 52.2 60 0.0013 25.7 6.3 28 30-57 15-42 (159)
25 PF12505 DUF3712: Protein of u 45.1 47 0.001 24.7 4.5 25 89-113 100-124 (125)
26 PRK08455 fliL flagellar basal 44.9 16 0.00034 29.5 2.0 11 53-63 38-48 (182)
27 PF07705 CARDB: CARDB; InterP 41.8 1.1E+02 0.0024 20.8 8.6 53 89-145 19-71 (101)
28 KOG3950 Gamma/delta sarcoglyca 41.2 2.3E+02 0.005 24.3 8.5 19 84-102 103-121 (292)
29 PF14221 DUF4330: Domain of un 41.2 1.8E+02 0.0039 23.0 8.9 10 93-102 57-66 (168)
30 PRK06531 yajC preprotein trans 41.1 11 0.00023 28.2 0.4 12 52-63 15-26 (113)
31 PF15012 DUF4519: Domain of un 40.3 29 0.00063 22.5 2.3 12 49-60 45-56 (56)
32 PF14874 PapD-like: Flagellar- 40.1 1.3E+02 0.0028 21.0 9.4 55 87-144 18-72 (102)
33 PF11906 DUF3426: Protein of u 38.6 1.7E+02 0.0037 22.1 7.5 58 64-126 48-106 (149)
34 PF11797 DUF3324: Protein of u 37.7 1.8E+02 0.0039 22.1 11.0 55 88-142 41-97 (140)
35 COG4736 CcoQ Cbb3-type cytochr 37.6 13 0.00028 24.6 0.3 20 42-61 15-34 (60)
36 PTZ00382 Variant-specific surf 36.9 27 0.00058 25.2 1.9 13 46-58 81-93 (96)
37 cd01324 cbb3_Oxidase_CcoQ Cyto 36.1 15 0.00033 23.0 0.5 15 47-61 21-35 (48)
38 PF05545 FixQ: Cbb3-type cytoc 35.1 13 0.00027 23.2 -0.0 20 42-61 15-34 (49)
39 PF15099 PIRT: Phosphoinositid 35.1 40 0.00087 25.6 2.7 38 27-64 43-80 (129)
40 PF07423 DUF1510: Protein of u 33.8 17 0.00037 30.3 0.6 17 42-60 22-38 (217)
41 PRK00159 putative septation in 31.6 84 0.0018 22.3 3.7 29 28-56 26-54 (87)
42 PF04415 DUF515: Protein of un 30.9 26 0.00057 32.0 1.3 18 42-59 41-58 (416)
43 COG3121 FimC P pilus assembly 30.6 1.1E+02 0.0025 25.5 5.0 44 93-141 165-208 (235)
44 PF12321 DUF3634: Protein of u 30.2 19 0.00041 26.7 0.2 16 50-65 10-27 (108)
45 PF09865 DUF2092: Predicted pe 29.4 3.3E+02 0.0071 22.5 7.9 38 85-122 35-74 (214)
46 PRK02251 putative septation in 28.9 87 0.0019 22.3 3.4 31 31-62 30-60 (87)
47 PF06781 UPF0233: Uncharacteri 28.4 1.2E+02 0.0026 21.5 4.1 27 30-56 28-54 (87)
48 CHL00031 psbT photosystem II p 28.1 41 0.00088 19.4 1.3 21 44-64 9-29 (33)
49 COG3736 VirB8 Type IV secretor 27.4 29 0.00063 29.3 0.9 49 29-77 39-87 (239)
50 PRK11875 psbT photosystem II r 26.9 35 0.00076 19.3 0.9 20 45-64 10-29 (31)
51 PF03302 VSP: Giardia variant- 26.6 41 0.0009 30.5 1.8 19 42-60 378-396 (397)
52 PF05966 Chordopox_A33R: Chord 26.2 22 0.00048 28.9 0.0 13 103-115 106-118 (190)
53 PF10907 DUF2749: Protein of u 26.2 78 0.0017 21.2 2.6 16 45-60 13-28 (66)
54 PF08693 SKG6: Transmembrane a 26.2 44 0.00095 20.2 1.3 7 52-58 31-37 (40)
55 PF13544 N_methyl_2: Type IV p 24.4 72 0.0016 17.8 1.9 12 30-41 8-19 (31)
56 PRK05696 fliL flagellar basal 24.3 73 0.0016 25.2 2.7 17 104-120 85-101 (170)
57 PF03923 Lipoprotein_16: Uncha 24.1 3.4E+02 0.0074 20.9 7.4 51 58-108 66-117 (159)
58 PF06024 DUF912: Nucleopolyhed 23.6 2.1E+02 0.0047 20.5 4.8 18 42-59 71-89 (101)
59 PF04573 SPC22: Signal peptida 23.2 1.3E+02 0.0028 24.2 3.8 12 57-68 32-43 (175)
60 PF06030 DUF916: Bacterial pro 23.0 1.5E+02 0.0033 22.1 4.0 19 129-147 87-105 (121)
61 COG5488 Integral membrane prot 22.9 77 0.0017 25.0 2.4 13 8-20 2-14 (164)
62 PF05473 Herpes_UL45: UL45 pro 22.7 58 0.0012 26.7 1.8 26 9-34 23-48 (200)
63 PF01299 Lamp: Lysosome-associ 22.6 75 0.0016 27.5 2.6 18 44-61 282-299 (306)
64 PF10830 DUF2553: Protein of u 22.5 1.9E+02 0.0041 20.0 4.0 29 100-128 7-35 (76)
65 KOG4684 Uncharacterized conser 21.1 30 0.00065 28.9 -0.2 27 28-54 206-232 (275)
66 PF02009 Rifin_STEVOR: Rifin/s 20.9 26 0.00057 30.6 -0.6 10 49-58 271-280 (299)
67 COG1589 FtsQ Cell division sep 20.9 42 0.00092 28.5 0.7 26 49-74 45-70 (269)
68 PF12751 Vac7: Vacuolar segreg 20.9 50 0.0011 29.9 1.2 71 2-73 259-345 (387)
69 PF06446 Hepcidin: Hepcidin; 20.1 61 0.0013 21.1 1.2 10 29-38 36-45 (57)
70 COG4698 Uncharacterized protei 20.1 79 0.0017 25.7 2.0 21 51-71 28-48 (197)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=2.4e-49 Score=328.52 Aligned_cols=212 Identities=30% Similarity=0.529 Sum_probs=190.4
Q ss_pred CCCCcccCCCcccCCCCCCC--CCCCCcCCcceeEeehHHHH-HHHHHHHHHheeeEEEeeCCCeEEEEEEEEeeEEeee
Q 028071 2 DPEEAPIAPSAAAGQADKPK--PPKSGRSHRKRNICIGILVS-IVAIVLLIVILALTVFKAKDPKTTINSITVQDVSIAL 78 (214)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~c~~C~~~~~~-lill~~v~~~i~~lv~rPk~P~~~v~~~~v~~~~~~~ 78 (214)
+|..+||||++.+.++|||. ++.+.++||+|.+||+|+++ +++|++++++++|++||||+|+|+++++++++|+++.
T Consensus 4 ~~~~~p~a~~~~~~~~d~~~~~~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~ 83 (219)
T PLN03160 4 TEQVRPLAPAAFRLRSDEEEATNHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELIN 83 (219)
T ss_pred cccCCCCCCCcccccCchhhcCcchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeecc
Confidence 56789999999999999973 33344577788888888777 7777888888999999999999999999999999974
Q ss_pred cCcCcceeEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCCceecCCCceEEEEEEEEEeeeecCCcchhc
Q 028071 79 DSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAKISADKTTALNMTVTILANRFLSNPQLFS 158 (214)
Q Consensus 79 ~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~~~~~~l~~~~~l~~ 158 (214)
+ ...+..+|+++.++++++|||+++|+|+++++.++|+|+.+|++.+|+|+|++++++.+++++.+.+.++.++++|.+
T Consensus 84 ~-~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~~~L~~ 162 (219)
T PLN03160 84 N-TTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSVPGLLT 162 (219)
T ss_pred C-CCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccchhHHH
Confidence 3 223568999999999999999999999999999999999999999999999999999999999888877766788999
Q ss_pred cccCCcEEeEEEEEEEEEEEEEe-EeeeEEEEEEeEEEEEcCCceEEcccccccccC
Q 028071 159 DATAGSMPMSTMAKVSGKVNIVG-IKISVSATSTCHFTVFLGNRTVSDQDCKTKAKI 214 (214)
Q Consensus 159 d~~~g~v~l~v~~~~~~~v~v~g-~k~~~~~~v~C~v~v~~~~~~~~~~~C~~~~k~ 214 (214)
|+++|.++|+++++++||++++| ++.+++.+++|++.++.++..+++++|+.++++
T Consensus 163 D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~~~~ 219 (219)
T PLN03160 163 DISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHVDL 219 (219)
T ss_pred HhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEecccccC
Confidence 99999999999999999999888 777999999999999999999999999999886
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.51 E-value=8.2e-14 Score=101.10 Aligned_cols=97 Identities=24% Similarity=0.429 Sum_probs=73.8
Q ss_pred EEEEECCCceeEEEeceEEEEEECCEEEe-ceEeCCceecCCCceEEEEEEEEEeeeecCCcchhccccCCcEEeEEEEE
Q 028071 94 NVGIKNPNKVSMKLKKGNADIMYRGDTVG-VVPIPVAKISADKTTALNMTVTILANRFLSNPQLFSDATAGSMPMSTMAK 172 (214)
Q Consensus 94 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~t~~v~~~l~~~~~~l~~~~~l~~d~~~g~v~l~v~~~ 172 (214)
+++++|||.++++|++.+++++|+|+.+| ....++|+|++++++.+.+.+++....+ ...+.++. +|..++++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l--~~~l~~~~-~~~~~~~v~~~ 77 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL--PRLLKDLL-AGRVPFDVTYR 77 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH--HHHHHHHH-HTTSCEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH--HHHHHhhh-ccccceEEEEE
Confidence 58999999999999999999999999999 7788999999999999999887775444 23444555 66778888889
Q ss_pred EEEEEEEEe--EeeeEEEEEEeE
Q 028071 173 VSGKVNIVG--IKISVSATSTCH 193 (214)
Q Consensus 173 ~~~~v~v~g--~k~~~~~~v~C~ 193 (214)
+++++++.+ +..+..+.++|+
T Consensus 78 ~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 78 IRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEcccceeeeEEEeEEeE
Confidence 999999633 333445555443
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.88 E-value=2.1e-08 Score=73.37 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=68.4
Q ss_pred eeEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeC-CceecCCCceEEEEEEEEEeeeecCCcchhccccCC
Q 028071 85 VNLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIP-VAKISADKTTALNMTVTILANRFLSNPQLFSDATAG 163 (214)
Q Consensus 85 ~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~v~~~l~~~~~~l~~~~~l~~d~~~g 163 (214)
..++.++.+.++++|||.+++.|++.+.+++|+|..+|++..+ ++.+++++++.+.+++++.. .....+..++.+|
T Consensus 11 ~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~---~~~~~~~~~l~~~ 87 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNL---FLAEALIWHIANG 87 (100)
T ss_pred cceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeeh---hHhHHHHHhhccC
Confidence 3678899999999999999999999999999999999999985 79999999999999988732 1124556666555
Q ss_pred c-EEeEEEEE
Q 028071 164 S-MPMSTMAK 172 (214)
Q Consensus 164 ~-v~l~v~~~ 172 (214)
. ++++++++
T Consensus 88 ~~~~y~l~g~ 97 (100)
T smart00769 88 EEIPYRLDGK 97 (100)
T ss_pred CCccEEEEEE
Confidence 3 55554443
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.56 E-value=2.6e-05 Score=65.14 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=65.5
Q ss_pred EeeCCCeEEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCC-ceecCCC
Q 028071 57 FKAKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPV-AKISADK 135 (214)
Q Consensus 57 ~rPk~P~~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~ 135 (214)
+-||.-.++-.++......++.. ...+..++.-.++++|||.+++.-.+.++++.|....+|++.... ..++|++
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~----~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs 171 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPD----KSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRS 171 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCC----CCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccC
Confidence 44987666555544444444421 345777888999999999999999999999999999999998765 4788998
Q ss_pred ceEEEEEEEE
Q 028071 136 TTALNMTVTI 145 (214)
Q Consensus 136 t~~v~~~l~~ 145 (214)
.+.+.+++..
T Consensus 172 ~~q~~~tV~t 181 (238)
T PF07092_consen 172 SKQVNYTVKT 181 (238)
T ss_pred CceEEEEeeE
Confidence 8888877554
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.83 E-value=0.0023 Score=49.90 Aligned_cols=106 Identities=10% Similarity=0.175 Sum_probs=74.0
Q ss_pred eCCCeEEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceE-eCCceecCCCce
Q 028071 59 AKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVP-IPVAKISADKTT 137 (214)
Q Consensus 59 Pk~P~~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~-vp~f~q~~~~t~ 137 (214)
-+.|.+.--.+..-. ++ .....+-.++.++|||.+.+--.+.+..++-+|..+|++. ..++.++|++..
T Consensus 30 ~~~p~ve~~ka~wGk--vt--------~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~ 99 (161)
T COG5608 30 VKKPGVESMKAKWGK--VT--------NSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRE 99 (161)
T ss_pred cCCCCceEEEEEEEE--Ee--------ccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeE
Confidence 345665554444443 33 1233678899999999999999999999999999999987 577999999999
Q ss_pred EEEEEEEEEeeeecCCcchhccccCCcE-EeEEEEEEEEEEE
Q 028071 138 ALNMTVTILANRFLSNPQLFSDATAGSM-PMSTMAKVSGKVN 178 (214)
Q Consensus 138 ~v~~~l~~~~~~l~~~~~l~~d~~~g~v-~l~v~~~~~~~v~ 178 (214)
++.+++..+...+. ..+...+.+|+= ++ ++++.+.++
T Consensus 100 tvdv~l~~d~~~~k--e~w~~hi~ngErs~I--r~~i~~~v~ 137 (161)
T COG5608 100 TVDVPLRLDNSKIK--EWWVTHIENGERSTI--RVRIKGVVK 137 (161)
T ss_pred EEEEEEEEehHHHH--HHHHHHhhccCcccE--EEEEEEEEE
Confidence 99999877653331 233445556652 33 334455555
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.76 E-value=0.00016 Score=64.25 Aligned_cols=60 Identities=25% Similarity=0.453 Sum_probs=40.9
Q ss_pred EEeeCCCeEEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEec
Q 028071 56 VFKAKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGV 123 (214)
Q Consensus 56 v~rPk~P~~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~ 123 (214)
+|--.+|--.|+=+.++++-.+ .=..-|++.|.+.|||.+.|.-++.++.|+-+-..+|.
T Consensus 323 v~AttKpL~~v~v~~I~NVlaS--------~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 323 VFATTKPLTDVQVVSIQNVLAS--------EQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred hhhcCcccccceEEEeeeeeec--------cceEEEeeEEEEECCCeEEEEeccceeeeEecCCccCc
Confidence 3445566555555555554333 12235889999999999999999999999976655553
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=94.41 E-value=1.5 Score=36.53 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=28.3
Q ss_pred CcCCcce-eEeehHHHHHHHHHHHHHheeeEEEeeC--CCeEEEEEEEEe
Q 028071 26 GRSHRKR-NICIGILVSIVAIVLLIVILALTVFKAK--DPKTTINSITVQ 72 (214)
Q Consensus 26 ~~~~~~c-~~C~~~~~~lill~~v~~~i~~lv~rPk--~P~~~v~~~~v~ 72 (214)
.++..+| .|++++++++++++++++++++=.=.|+ .-.++++++.+.
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~ 82 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELI 82 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeec
Confidence 3444545 4556667775555555555666567776 466677777664
No 8
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=87.29 E-value=0.029 Score=36.71 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=11.3
Q ss_pred CCCcCCcceeEeehHHHH
Q 028071 24 KSGRSHRKRNICIGILVS 41 (214)
Q Consensus 24 ~~~~~~~~c~~C~~~~~~ 41 (214)
.+.||||+|..|.++++.
T Consensus 24 ~~r~RrRrc~~~v~~v~~ 41 (60)
T PF06072_consen 24 ASRRRRRRCRLAVAIVFA 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444567777766666555
No 9
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=83.82 E-value=1.5 Score=34.36 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=12.8
Q ss_pred HHHHHheeeEEEeeCCCeE
Q 028071 46 VLLIVILALTVFKAKDPKT 64 (214)
Q Consensus 46 ~~v~~~i~~lv~rPk~P~~ 64 (214)
++++++++|+..|+|+-+|
T Consensus 64 l~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 64 LGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHhheeEEEecccCcc
Confidence 3445566888888887544
No 10
>PF14927 Neurensin: Neurensin
Probab=80.87 E-value=2.1 Score=33.24 Aligned_cols=29 Identities=3% Similarity=-0.033 Sum_probs=19.2
Q ss_pred eehHHHHHHHHHHHHHheeeEEEeeCCCeEE
Q 028071 35 CIGILVSIVAIVLLIVILALTVFKAKDPKTT 65 (214)
Q Consensus 35 C~~~~~~lill~~v~~~i~~lv~rPk~P~~~ 65 (214)
|+++.+++++++++++++.|++ |++++..
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vgY~v--P~~~e~~ 75 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVGYLV--PPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--CCcceec
Confidence 3344333677777778888887 7766655
No 11
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=68.74 E-value=14 Score=27.99 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=25.3
Q ss_pred eeeEEEeeCCCeEEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCC
Q 028071 52 LALTVFKAKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPN 101 (214)
Q Consensus 52 i~~lv~rPk~P~~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN 101 (214)
-.|+.-++++|.+.+......+ .....+.+-++++|--
T Consensus 24 y~~l~~~~~pp~l~v~~~~~~r------------~~~gqyyVpF~V~N~g 61 (122)
T TIGR02588 24 YDWLRYSNKAAVLEVAPAEVER------------MQTGQYYVPFAIHNLG 61 (122)
T ss_pred HHhhccCCCCCeEEEeehheeE------------EeCCEEEEEEEEEeCC
Confidence 4566677888999877666543 2233567788888873
No 12
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=67.10 E-value=53 Score=25.95 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=11.1
Q ss_pred EEEeceEEEEEECCEEE
Q 028071 105 MKLKKGNADIMYRGDTV 121 (214)
Q Consensus 105 i~y~~~~~~v~Y~g~~l 121 (214)
.+|=...+.+.+++...
T Consensus 86 ~ryLkv~i~L~~~~~~~ 102 (166)
T PRK12785 86 VQYLKLKVVLEVKDEKV 102 (166)
T ss_pred ceEEEEEEEEEECCHHH
Confidence 46777777777776543
No 13
>PRK05529 cell division protein FtsQ; Provisional
Probab=64.81 E-value=9.1 Score=32.51 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.8
Q ss_pred CCeEEEEEEEEeeEE
Q 028071 61 DPKTTINSITVQDVS 75 (214)
Q Consensus 61 ~P~~~v~~~~v~~~~ 75 (214)
.|.|.|+++.|++-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 699999999998654
No 14
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=62.77 E-value=2.3 Score=25.18 Aligned_cols=18 Identities=11% Similarity=0.397 Sum_probs=11.8
Q ss_pred HHHHHHHHHheeeEEEee
Q 028071 42 IVAIVLLIVILALTVFKA 59 (214)
Q Consensus 42 lill~~v~~~i~~lv~rP 59 (214)
+++++++.++++|+++.-
T Consensus 17 llflv~imliif~f~le~ 34 (43)
T PF11395_consen 17 LLFLVIIMLIIFWFSLEI 34 (43)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566666667778877543
No 15
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=61.62 E-value=48 Score=25.37 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=27.4
Q ss_pred EEEEEEEEECCCceeEEEeceEEEEEECCEEEec
Q 028071 90 TLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGV 123 (214)
Q Consensus 90 ~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~ 123 (214)
.+.+..+++|-.+..+..=..++++..+++..+.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCc
Confidence 5778899999999888888899999886654444
No 16
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=61.00 E-value=89 Score=25.36 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=17.0
Q ss_pred eeCCCeEEEEEEEEeeEEee
Q 028071 58 KAKDPKTTINSITVQDVSIA 77 (214)
Q Consensus 58 rPk~P~~~v~~~~v~~~~~~ 77 (214)
.++.|.|.+++++...|+.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46679999999999988865
No 17
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=60.29 E-value=4.2 Score=34.90 Aligned_cols=14 Identities=7% Similarity=-0.026 Sum_probs=10.6
Q ss_pred CCcceeEeehHHHH
Q 028071 28 SHRKRNICIGILVS 41 (214)
Q Consensus 28 ~~~~c~~C~~~~~~ 41 (214)
+|++|++|++++++
T Consensus 9 wrk~cly~~vllL~ 22 (264)
T PF04790_consen 9 WRKRCLYLFVLLLF 22 (264)
T ss_pred hhhhhHHHHHHHHH
Confidence 46778888887777
No 18
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=59.75 E-value=15 Score=30.66 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=6.5
Q ss_pred eeEEEeeCCCeE
Q 028071 53 ALTVFKAKDPKT 64 (214)
Q Consensus 53 ~~lv~rPk~P~~ 64 (214)
.|-++|||....
T Consensus 179 YfK~~K~K~~~~ 190 (218)
T PF14283_consen 179 YFKFYKPKQEEK 190 (218)
T ss_pred EEEEeccccccc
Confidence 333567765543
No 19
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=59.03 E-value=3.1 Score=30.58 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=0.0
Q ss_pred CCcceeEeehHHHH
Q 028071 28 SHRKRNICIGILVS 41 (214)
Q Consensus 28 ~~~~c~~C~~~~~~ 41 (214)
+|||-.+|+.++++
T Consensus 23 ~~rR~~k~~~~i~~ 36 (106)
T PF11837_consen 23 RRRRPLKCLAAIFS 36 (106)
T ss_dssp --------------
T ss_pred CcCCcchhHHHHHH
Confidence 34444455555544
No 20
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=58.11 E-value=3.3 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred cCCcceeEeehHHHH----HHHHHHHHHheeeEEEeeC
Q 028071 27 RSHRKRNICIGILVS----IVAIVLLIVILALTVFKAK 60 (214)
Q Consensus 27 ~~~~~c~~C~~~~~~----lill~~v~~~i~~lv~rPk 60 (214)
..+++|.+++.++.+ .++|+|- ++.+|++|.=+
T Consensus 23 ~~~~s~sra~~vagltvLa~LLiAGQ-a~TaYfv~~Qk 59 (114)
T PF09307_consen 23 PQRGSCSRALKVAGLTVLACLLIAGQ-AVTAYFVFQQK 59 (114)
T ss_dssp --------------------------------------
T ss_pred CCCCCccchhHHHHHHHHHHHHHHhH-HHHHHHHHHhH
Confidence 344556555555444 3333443 34567776644
No 21
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=54.11 E-value=14 Score=30.22 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=8.9
Q ss_pred CCCcccCCCcccCCC
Q 028071 3 PEEAPIAPSAAAGQA 17 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (214)
+++.|+.|+......
T Consensus 5 ~~~~~~~~~~~~~~~ 19 (200)
T PF05473_consen 5 DQQAPLKPTKSSLSF 19 (200)
T ss_pred cccCccccccccccc
Confidence 355667766666544
No 22
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=53.54 E-value=76 Score=22.63 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=39.5
Q ss_pred eeEeEEEEEEEEEECCCcee---EEEeceEEEEEECCEEEe--ceEeCCceecCCCceEEEEEEE
Q 028071 85 VNLNITLDVNVGIKNPNKVS---MKLKKGNADIMYRGDTVG--VVPIPVAKISADKTTALNMTVT 144 (214)
Q Consensus 85 ~~ln~~l~~~v~v~NPN~~~---i~y~~~~~~v~Y~g~~lg--~~~vp~f~q~~~~t~~v~~~l~ 144 (214)
..++-++.+.+++.||.... +...=....++|.|.... .........+|+++..+.+.+.
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 34566789999999997632 333335677789998653 3345677788898887777653
No 23
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=53.38 E-value=89 Score=23.03 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=9.6
Q ss_pred EEECCEEEece--EeCC
Q 028071 114 IMYRGDTVGVV--PIPV 128 (214)
Q Consensus 114 v~Y~g~~lg~~--~vp~ 128 (214)
..|++..+|.- .+|+
T Consensus 70 ~~~d~aeVGrreV~vp~ 86 (112)
T PF14155_consen 70 LDYDGAEVGRREVLVPP 86 (112)
T ss_pred EeCCCCEEEEEEEEECC
Confidence 34778888864 4555
No 24
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=52.19 E-value=60 Score=25.66 Aligned_cols=28 Identities=7% Similarity=-0.128 Sum_probs=13.3
Q ss_pred cceeEeehHHHHHHHHHHHHHheeeEEE
Q 028071 30 RKRNICIGILVSIVAIVLLIVILALTVF 57 (214)
Q Consensus 30 ~~c~~C~~~~~~lill~~v~~~i~~lv~ 57 (214)
++..|-++..+.+++++++.+..+|+..
T Consensus 15 k~~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 15 KKSLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred CceeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 4444444444443444444455566654
No 25
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=45.09 E-value=47 Score=24.70 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEEEEEECCCceeEEEeceEEE
Q 028071 89 ITLDVNVGIKNPNKVSMKLKKGNAD 113 (214)
Q Consensus 89 ~~l~~~v~v~NPN~~~i~y~~~~~~ 113 (214)
.++..++.+.||..+++..++.++.
T Consensus 100 ~~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCeEEEEeccEEEe
Confidence 3567788889998888888877664
No 26
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=44.89 E-value=16 Score=29.54 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=5.1
Q ss_pred eeEEEeeCCCe
Q 028071 53 ALTVFKAKDPK 63 (214)
Q Consensus 53 ~~lv~rPk~P~ 63 (214)
+|+.+....+.
T Consensus 38 ~~~~~~~~~~~ 48 (182)
T PRK08455 38 AMLLMGSKEEE 48 (182)
T ss_pred HHHHhcCCCcc
Confidence 44455444443
No 27
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=41.80 E-value=1.1e+02 Score=20.79 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=34.1
Q ss_pred EEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCCceecCCCceEEEEEEEE
Q 028071 89 ITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAKISADKTTALNMTVTI 145 (214)
Q Consensus 89 ~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~~ 145 (214)
-.+.+.++++|.-... -++..+.++.+|..++...+++ ..++.+..+.+++..
T Consensus 19 ~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i~~--L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 19 EPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTIPS--LAPGESETVTFTWTP 71 (101)
T ss_dssp SEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEESE--B-TTEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEECC--cCCCcEEEEEEEEEe
Confidence 3567788899975422 4466778888899888777755 456666666666544
No 28
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=41.21 E-value=2.3e+02 Score=24.26 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=15.5
Q ss_pred ceeEeEEEEEEEEEECCCc
Q 028071 84 RVNLNITLDVNVGIKNPNK 102 (214)
Q Consensus 84 ~~~ln~~l~~~v~v~NPN~ 102 (214)
..++...=+++++++|||.
T Consensus 103 ~l~~~S~rnvtvnarn~~g 121 (292)
T KOG3950|consen 103 PLYLQSARNVTVNARNPNG 121 (292)
T ss_pred ceEEEeccCeeEEccCCCC
Confidence 3467777789999999997
No 29
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=41.19 E-value=1.8e+02 Score=23.03 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=5.1
Q ss_pred EEEEEECCCc
Q 028071 93 VNVGIKNPNK 102 (214)
Q Consensus 93 ~~v~v~NPN~ 102 (214)
..+.+.||..
T Consensus 57 ~~l~~~~~~~ 66 (168)
T PF14221_consen 57 RGLSVPDPEP 66 (168)
T ss_pred eeeecCCccH
Confidence 3455555554
No 30
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=41.08 E-value=11 Score=28.21 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=8.3
Q ss_pred eeeEEEeeCCCe
Q 028071 52 LALTVFKAKDPK 63 (214)
Q Consensus 52 i~~lv~rPk~P~ 63 (214)
++|+.+||+.=+
T Consensus 15 i~yf~iRPQkKr 26 (113)
T PRK06531 15 LIFFMQRQQKKQ 26 (113)
T ss_pred HHHheechHHHH
Confidence 457789998543
No 31
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=40.25 E-value=29 Score=22.53 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=8.1
Q ss_pred HHheeeEEEeeC
Q 028071 49 IVILALTVFKAK 60 (214)
Q Consensus 49 ~~~i~~lv~rPk 60 (214)
|++++|+.-||+
T Consensus 45 Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 45 IVVFVYLKTRPR 56 (56)
T ss_pred HhheeEEeccCC
Confidence 445678888775
No 32
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=40.14 E-value=1.3e+02 Score=21.01 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=31.8
Q ss_pred EeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCCceecCCCceEEEEEEE
Q 028071 87 LNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAKISADKTTALNMTVT 144 (214)
Q Consensus 87 ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~ 144 (214)
........++++|......+|.=..-. ..+..+ ...-+++...|+.+..+.+.+.
T Consensus 18 ~g~~~~~~v~l~N~s~~p~~f~v~~~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 18 VGQTYSRTVTLTNTSSIPARFRVRQPE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred cCCEEEEEEEEEECCCCCEEEEEEeCC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 444667889999998755444311000 011111 2223466788888888888876
No 33
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=38.62 E-value=1.7e+02 Score=22.08 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=40.6
Q ss_pred EEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCCceeEEEeceEEEEE-ECCEEEeceEe
Q 028071 64 TTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADIM-YRGDTVGVVPI 126 (214)
Q Consensus 64 ~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~-Y~g~~lg~~~v 126 (214)
-.+..++++...+... ..-+-.+.++.+++|.......|-...++++ -+|+.+.+-.+
T Consensus 48 ~~~~~l~i~~~~~~~~-----~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPV-----PDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEee-----cCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 3555555555444321 1123356788999999999999999999998 77888887665
No 34
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=37.68 E-value=1.8e+02 Score=22.08 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=37.3
Q ss_pred eEEEEEEEEEECCCceeEEEeceEEEEEECCE--EEeceEeCCceecCCCceEEEEE
Q 028071 88 NITLDVNVGIKNPNKVSMKLKKGNADIMYRGD--TVGVVPIPVAKISADKTTALNMT 142 (214)
Q Consensus 88 n~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~--~lg~~~vp~f~q~~~~t~~v~~~ 142 (214)
|..-.+.+.++||+..-+.=-.+++.|+..|. .+.......+..-|.+.-.+.+.
T Consensus 41 n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~ 97 (140)
T PF11797_consen 41 NGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIP 97 (140)
T ss_pred CCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEec
Confidence 33446788899998744444456677877774 67777788888888876554443
No 35
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.58 E-value=13 Score=24.56 Aligned_cols=20 Identities=10% Similarity=0.361 Sum_probs=13.0
Q ss_pred HHHHHHHHHheeeEEEeeCC
Q 028071 42 IVAIVLLIVILALTVFKAKD 61 (214)
Q Consensus 42 lill~~v~~~i~~lv~rPk~ 61 (214)
++.+.+..+.++|.+|||+.
T Consensus 15 t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 44444445556678899985
No 36
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=36.88 E-value=27 Score=25.18 Aligned_cols=13 Identities=15% Similarity=-0.044 Sum_probs=7.1
Q ss_pred HHHHHheeeEEEe
Q 028071 46 VLLIVILALTVFK 58 (214)
Q Consensus 46 ~~v~~~i~~lv~r 58 (214)
+++.++++|+++|
T Consensus 81 ~lv~~l~w~f~~r 93 (96)
T PTZ00382 81 GLVGFLCWWFVCR 93 (96)
T ss_pred HHHHHHhheeEEe
Confidence 3334455666666
No 37
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=36.07 E-value=15 Score=22.95 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=8.3
Q ss_pred HHHHheeeEEEeeCC
Q 028071 47 LLIVILALTVFKAKD 61 (214)
Q Consensus 47 ~v~~~i~~lv~rPk~ 61 (214)
++.+.+++.+|+|+.
T Consensus 21 ~~Figiv~wa~~p~~ 35 (48)
T cd01324 21 LFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHhCCCc
Confidence 333334445788874
No 38
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.12 E-value=13 Score=23.17 Aligned_cols=20 Identities=5% Similarity=0.358 Sum_probs=10.3
Q ss_pred HHHHHHHHHheeeEEEeeCC
Q 028071 42 IVAIVLLIVILALTVFKAKD 61 (214)
Q Consensus 42 lill~~v~~~i~~lv~rPk~ 61 (214)
++++.++.+.+++.+++|+.
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 33343334334455678884
No 39
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=35.10 E-value=40 Score=25.64 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=22.4
Q ss_pred cCCcceeEeehHHHHHHHHHHHHHheeeEEEeeCCCeE
Q 028071 27 RSHRKRNICIGILVSIVAIVLLIVILALTVFKAKDPKT 64 (214)
Q Consensus 27 ~~~~~c~~C~~~~~~lill~~v~~~i~~lv~rPk~P~~ 64 (214)
+..-.|-+|+.-....++++|+++..+.+.|.++...+
T Consensus 43 g~e~s~Yrci~pfG~vili~GvvvT~vays~n~~~si~ 80 (129)
T PF15099_consen 43 GAEWSCYRCIMPFGVVILIAGVVVTAVAYSFNSHGSII 80 (129)
T ss_pred CCCceEEEEEEEehHHHHHHhhHhheeeEeecCCcchh
Confidence 44456777776666666666666555555565555543
No 40
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=33.78 E-value=17 Score=30.26 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=7.4
Q ss_pred HHHHHHHHHheeeEEEeeC
Q 028071 42 IVAIVLLIVILALTVFKAK 60 (214)
Q Consensus 42 lill~~v~~~i~~lv~rPk 60 (214)
+|+|+|+++ +|.+|.+.
T Consensus 22 IV~lLIiiv--a~~lf~~~ 38 (217)
T PF07423_consen 22 IVSLLIIIV--AYQLFFGG 38 (217)
T ss_pred HHHHHHHHH--hhhheecC
Confidence 444444433 34444444
No 41
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=31.57 E-value=84 Score=22.33 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=17.7
Q ss_pred CCcceeEeehHHHHHHHHHHHHHheeeEE
Q 028071 28 SHRKRNICIGILVSIVAIVLLIVILALTV 56 (214)
Q Consensus 28 ~~~~c~~C~~~~~~lill~~v~~~i~~lv 56 (214)
....-.+.....+.+.+++++-+++.|+.
T Consensus 26 ~~~sp~W~~~~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 26 AGPSSVWYVVLMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445565555555777777777766663
No 42
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=30.95 E-value=26 Score=31.98 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=8.4
Q ss_pred HHHHHHHHHheeeEEEee
Q 028071 42 IVAIVLLIVILALTVFKA 59 (214)
Q Consensus 42 lill~~v~~~i~~lv~rP 59 (214)
+|+++++..+-.|+..+|
T Consensus 41 iIii~~~~~~Y~~~~~~~ 58 (416)
T PF04415_consen 41 IIIIFIVYNIYYFLQNQP 58 (416)
T ss_pred HHHHHHHHHHHHHhhhhH
Confidence 444444444444444444
No 43
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.59 E-value=1.1e+02 Score=25.52 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=31.0
Q ss_pred EEEEEECCCceeEEEeceEEEEEECCEEEeceEeCCceecCCCceEEEE
Q 028071 93 VNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAKISADKTTALNM 141 (214)
Q Consensus 93 ~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~ 141 (214)
-.++++||--..+.+.+.++.. +|..++ +...++.|+++..+..
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~l 208 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFPL 208 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceeec
Confidence 3789999988888888777777 777776 4455566666655443
No 44
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=30.16 E-value=19 Score=26.69 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=8.5
Q ss_pred HheeeEEEeeCC--CeEE
Q 028071 50 VILALTVFKAKD--PKTT 65 (214)
Q Consensus 50 ~~i~~lv~rPk~--P~~~ 65 (214)
++++||++-=+. |.|.
T Consensus 10 ~li~~Lv~~~r~~~~vf~ 27 (108)
T PF12321_consen 10 ALIFWLVFVDRRGLPVFE 27 (108)
T ss_pred HHHHHHHHccccCceEEE
Confidence 345666654443 5554
No 45
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=29.41 E-value=3.3e+02 Score=22.53 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=29.9
Q ss_pred eeEeEEEEEEEEEECCCceeEEEe--ceEEEEEECCEEEe
Q 028071 85 VNLNITLDVNVGIKNPNKVSMKLK--KGNADIMYRGDTVG 122 (214)
Q Consensus 85 ~~ln~~l~~~v~v~NPN~~~i~y~--~~~~~v~Y~g~~lg 122 (214)
..+...-+.++.++=||++.+.+. .....++|+|..+-
T Consensus 35 qklq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred ceEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEE
Confidence 456666688999999999777774 46689999998764
No 46
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=28.94 E-value=87 Score=22.26 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=17.8
Q ss_pred ceeEeehHHHHHHHHHHHHHheeeEEEeeCCC
Q 028071 31 KRNICIGILVSIVAIVLLIVILALTVFKAKDP 62 (214)
Q Consensus 31 ~c~~C~~~~~~lill~~v~~~i~~lv~rPk~P 62 (214)
...+.....+.+.+++++-++++|+ .-+.-|
T Consensus 30 sP~W~~~~m~~lm~~Gl~WlvvyYl-~~~~~P 60 (87)
T PRK02251 30 NPRWFVPLFVALMIIGLIWLVVYYL-SNGSLP 60 (87)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhh-hCCCcC
Confidence 3445554444477777777766665 334444
No 47
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=28.43 E-value=1.2e+02 Score=21.51 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=15.7
Q ss_pred cceeEeehHHHHHHHHHHHHHheeeEE
Q 028071 30 RKRNICIGILVSIVAIVLLIVILALTV 56 (214)
Q Consensus 30 ~~c~~C~~~~~~lill~~v~~~i~~lv 56 (214)
.+-.+.....+.+.+++++-++++|+.
T Consensus 28 ~sp~W~~p~m~~lmllGL~WiVvyYi~ 54 (87)
T PF06781_consen 28 PSPRWYAPLMLGLMLLGLLWIVVYYIS 54 (87)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhhhcc
Confidence 344555554444777777766665554
No 48
>CHL00031 psbT photosystem II protein T
Probab=28.12 E-value=41 Score=19.37 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=9.4
Q ss_pred HHHHHHHheeeEEEeeCCCeE
Q 028071 44 AIVLLIVILALTVFKAKDPKT 64 (214)
Q Consensus 44 ll~~v~~~i~~lv~rPk~P~~ 64 (214)
++++.+.++++.++-=.+|++
T Consensus 9 ll~~tlgilFFAI~FRePPri 29 (33)
T CHL00031 9 LLVSTLGIIFFAIFFREPPKV 29 (33)
T ss_pred HHHHHHHHHHHhheecCCCCC
Confidence 333333344455544455554
No 49
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=27.36 E-value=29 Score=29.35 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=30.7
Q ss_pred CcceeEeehHHHHHHHHHHHHHheeeEEEeeCCCeEEEEEEEEeeEEee
Q 028071 29 HRKRNICIGILVSIVAIVLLIVILALTVFKAKDPKTTINSITVQDVSIA 77 (214)
Q Consensus 29 ~~~c~~C~~~~~~lill~~v~~~i~~lv~rPk~P~~~v~~~~v~~~~~~ 77 (214)
+++..||+++++.++.+++++++++.+=++=+.|-+--.+-.-..+++.
T Consensus 39 ~r~~~~~va~~~~~l~v~~~~~Ia~llPLK~~epy~v~vd~~tg~~~iv 87 (239)
T COG3736 39 SRRLAWRVAILFTLLAVAAVIAIAILLPLKKTEPYVVRVDNNTGNVAIV 87 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEEEEcCCCceEEEE
Confidence 3466677777666555555555666777888888875554444444443
No 50
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=26.85 E-value=35 Score=19.33 Aligned_cols=20 Identities=25% Similarity=0.374 Sum_probs=8.6
Q ss_pred HHHHHHheeeEEEeeCCCeE
Q 028071 45 IVLLIVILALTVFKAKDPKT 64 (214)
Q Consensus 45 l~~v~~~i~~lv~rPk~P~~ 64 (214)
+.+.+.++++.++-=.+|++
T Consensus 10 l~~tlgiiFFAIfFRepPri 29 (31)
T PRK11875 10 LTLALVTLFFAIAFRDPPKI 29 (31)
T ss_pred HHHHHHHHHHhhhccCCCCC
Confidence 33333334444444445543
No 51
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=26.60 E-value=41 Score=30.49 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=11.6
Q ss_pred HHHHHHHHHheeeEEEeeC
Q 028071 42 IVAIVLLIVILALTVFKAK 60 (214)
Q Consensus 42 lill~~v~~~i~~lv~rPk 60 (214)
+|+-++|.+|.|||+.|=|
T Consensus 378 vvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 378 VVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred HHHHHHHHHHhhheeeccc
Confidence 3333444467788888754
No 52
>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins. A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.
Probab=26.23 E-value=22 Score=28.94 Aligned_cols=13 Identities=0% Similarity=-0.097 Sum_probs=7.3
Q ss_pred eeEEEeceEEEEE
Q 028071 103 VSMKLKKGNADIM 115 (214)
Q Consensus 103 ~~i~y~~~~~~v~ 115 (214)
=||.|++-=..+-
T Consensus 106 ~GI~~~n~Cl~~~ 118 (190)
T PF05966_consen 106 DGIVYDNKCLTLN 118 (190)
T ss_dssp SSEEETTEEEEEE
T ss_pred CCcccCCEEEEec
Confidence 5777776533333
No 53
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=26.19 E-value=78 Score=21.22 Aligned_cols=16 Identities=0% Similarity=0.050 Sum_probs=11.9
Q ss_pred HHHHHHheeeEEEeeC
Q 028071 45 IVLLIVILALTVFKAK 60 (214)
Q Consensus 45 l~~v~~~i~~lv~rPk 60 (214)
+++.+.++.|++..|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4444566889999998
No 54
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.18 E-value=44 Score=20.18 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=3.3
Q ss_pred eeeEEEe
Q 028071 52 LALTVFK 58 (214)
Q Consensus 52 i~~lv~r 58 (214)
++|+++|
T Consensus 31 ~l~~~~r 37 (40)
T PF08693_consen 31 FLFFWYR 37 (40)
T ss_pred HhheEEe
Confidence 3444554
No 55
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=24.45 E-value=72 Score=17.83 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=1.6
Q ss_pred cceeEeehHHHH
Q 028071 30 RKRNICIGILVS 41 (214)
Q Consensus 30 ~~c~~C~~~~~~ 41 (214)
++....-++++.
T Consensus 8 ~~~~~~~GFTLi 19 (31)
T PF13544_consen 8 RRRRRQRGFTLI 19 (31)
T ss_dssp ----------HH
T ss_pred ccccccCCccHH
Confidence 334455677888
No 56
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.30 E-value=73 Score=25.17 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=10.1
Q ss_pred eEEEeceEEEEEECCEE
Q 028071 104 SMKLKKGNADIMYRGDT 120 (214)
Q Consensus 104 ~i~y~~~~~~v~Y~g~~ 120 (214)
+-+|=...+.+.+++..
T Consensus 85 ~~ryLkv~i~l~~~d~~ 101 (170)
T PRK05696 85 RDRLVQIKVQLMVRGSD 101 (170)
T ss_pred CceEEEEEEEEEECCHH
Confidence 34566666666666543
No 57
>PF03923 Lipoprotein_16: Uncharacterized lipoprotein; InterPro: IPR005619 The function of this presumed lipoprotein is unknown. The family includes Escherichia coli YajG P36671 from SWISSPROT.
Probab=24.07 E-value=3.4e+02 Score=20.95 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=32.7
Q ss_pred eeCCCeEEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCCc-eeEEEe
Q 028071 58 KAKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNK-VSMKLK 108 (214)
Q Consensus 58 rPk~P~~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN~-~~i~y~ 108 (214)
++..+.-.--.+.+..|..+.........+++.+.+.+.++|+|. +.=.|.
T Consensus 66 ~i~~~~~~~v~v~I~~l~~~v~~~~~~~~~~~~i~i~v~~~~~~~~~tK~y~ 117 (159)
T PF03923_consen 66 RIGPNANNNVTVQINELYADVKQGSLRYNATAKIQIEVTAQNGNGTFTKNYS 117 (159)
T ss_pred EeCCCCceEEEEEehheEEEeccceEEEEEEEEEEEEEEEEcCCCEEEEEEE
Confidence 334444455567777777764322223467888999999999998 544443
No 58
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=23.61 E-value=2.1e+02 Score=20.54 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=7.2
Q ss_pred HHHHHHHHHheeeEE-Eee
Q 028071 42 IVAIVLLIVILALTV-FKA 59 (214)
Q Consensus 42 lill~~v~~~i~~lv-~rP 59 (214)
++.+++++.++.|++ +|=
T Consensus 71 ~v~IlVily~IyYFVILRe 89 (101)
T PF06024_consen 71 FVCILVILYAIYYFVILRE 89 (101)
T ss_pred HHHHHHHHhhheEEEEEec
Confidence 333333333344444 443
No 59
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.17 E-value=1.3e+02 Score=24.17 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=7.2
Q ss_pred EeeCCCeEEEEE
Q 028071 57 FKAKDPKTTINS 68 (214)
Q Consensus 57 ~rPk~P~~~v~~ 68 (214)
+.+..|..++..
T Consensus 32 ~~~~~~~~~i~v 43 (175)
T PF04573_consen 32 FHPPSPSVSISV 43 (175)
T ss_pred ccCCCCceEEEE
Confidence 666667655543
No 60
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=22.97 E-value=1.5e+02 Score=22.09 Aligned_cols=19 Identities=5% Similarity=0.329 Sum_probs=14.7
Q ss_pred ceecCCCceEEEEEEEEEe
Q 028071 129 AKISADKTTALNMTVTILA 147 (214)
Q Consensus 129 f~q~~~~t~~v~~~l~~~~ 147 (214)
..++|++++.+.+++++..
T Consensus 87 Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 87 VTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred EEECCCCEEEEEEEEEcCC
Confidence 6788888888888877654
No 61
>COG5488 Integral membrane protein [Function unknown]
Probab=22.89 E-value=77 Score=24.95 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=10.6
Q ss_pred cCCCcccCCCCCC
Q 028071 8 IAPSAAAGQADKP 20 (214)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (214)
|.|++++.+.|||
T Consensus 2 ~~~~~~~~~~~eP 14 (164)
T COG5488 2 LQDAAAPSSIDEP 14 (164)
T ss_pred CCCCccccccCCc
Confidence 5678888899996
No 62
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=22.74 E-value=58 Score=26.69 Aligned_cols=26 Identities=4% Similarity=0.036 Sum_probs=12.5
Q ss_pred CCCcccCCCCCCCCCCCCcCCcceeE
Q 028071 9 APSAAAGQADKPKPPKSGRSHRKRNI 34 (214)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~c~~ 34 (214)
||+.+....+.+.+..+.+++.+|.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~s~~~~ 48 (200)
T PF05473_consen 23 EITEDEPNLDSATSTRREKRKSPCAC 48 (200)
T ss_pred CCCCCCccccccccccccccCCCccc
Confidence 44444444554444444444455554
No 63
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.61 E-value=75 Score=27.53 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=10.9
Q ss_pred HHHHHHHheeeEEEeeCC
Q 028071 44 AIVLLIVILALTVFKAKD 61 (214)
Q Consensus 44 ll~~v~~~i~~lv~rPk~ 61 (214)
+.++++++++|++.|=|.
T Consensus 282 a~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 282 AGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHHHhheeEeccc
Confidence 334444567898877554
No 64
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=22.55 E-value=1.9e+02 Score=20.01 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCceeEEEeceEEEEEECCEEEeceEeCC
Q 028071 100 PNKVSMKLKKGNADIMYRGDTVGVVPIPV 128 (214)
Q Consensus 100 PN~~~i~y~~~~~~v~Y~g~~lg~~~vp~ 128 (214)
.|++.-+|.+..+.+++.+..||+..+++
T Consensus 7 Td~V~gkf~ng~l~LY~~~e~IG~~~~~~ 35 (76)
T PF10830_consen 7 TDKVTGKFKNGGLELYHDNEMIGEIYMTE 35 (76)
T ss_pred ecceEEEecCCcEEEEeccceeeeEccCC
Confidence 35577788899999999999999976654
No 65
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=21.11 E-value=30 Score=28.88 Aligned_cols=27 Identities=4% Similarity=0.207 Sum_probs=11.7
Q ss_pred CCcceeEeehHHHHHHHHHHHHHheee
Q 028071 28 SHRKRNICIGILVSIVAIVLLIVILAL 54 (214)
Q Consensus 28 ~~~~c~~C~~~~~~lill~~v~~~i~~ 54 (214)
.||||.+|.+..+.+.+.++++.+..|
T Consensus 206 ar~Ra~~ffilal~~avta~~lt~gT~ 232 (275)
T KOG4684|consen 206 ARRRALLFFILALTVAVTAVILTMGTA 232 (275)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555444444334444443333333
No 66
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.88 E-value=26 Score=30.61 Aligned_cols=10 Identities=10% Similarity=0.574 Sum_probs=6.1
Q ss_pred HHheeeEEEe
Q 028071 49 IVILALTVFK 58 (214)
Q Consensus 49 ~~~i~~lv~r 58 (214)
+.+|+||++|
T Consensus 271 IMvIIYLILR 280 (299)
T PF02009_consen 271 IMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHH
Confidence 3445677766
No 67
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=20.87 E-value=42 Score=28.55 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=21.1
Q ss_pred HHheeeEEEeeCCCeEEEEEEEEeeE
Q 028071 49 IVILALTVFKAKDPKTTINSITVQDV 74 (214)
Q Consensus 49 ~~~i~~lv~rPk~P~~~v~~~~v~~~ 74 (214)
.+++.|....++.|.+.+..+.+++-
T Consensus 45 ~~~~~~~~~~~~~~~~~i~~v~v~Gn 70 (269)
T COG1589 45 VLVVLWVLILLSLPYFPIRKVSVSGN 70 (269)
T ss_pred HHHHHheehhhhcCCccceEEEEecC
Confidence 34456888889999999999999863
No 68
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=20.87 E-value=50 Score=29.91 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=33.7
Q ss_pred CCCCcccCCCcccCCCCC---CCC------CCCCcCCccee----EeehHHHH-HHHHHHHHHheeeEEEeeC-CCeE-E
Q 028071 2 DPEEAPIAPSAAAGQADK---PKP------PKSGRSHRKRN----ICIGILVS-IVAIVLLIVILALTVFKAK-DPKT-T 65 (214)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~c~----~C~~~~~~-lill~~v~~~i~~lv~rPk-~P~~-~ 65 (214)
|.|+-||-|+.-..++-. +.+ +....++|.|+ .|+.++++ |+++++++.+ ++..-||= +-++ .
T Consensus 259 DDERTPLi~S~R~~r~r~~RRp~s~slr~~e~~~~r~r~~~~r~~~c~~~~i~~lL~ig~~~gF-v~AttKpL~~v~v~~ 337 (387)
T PF12751_consen 259 DDERTPLIGSPRSSRSRHGRRPNSHSLRQMEYQQYRQRSWFSRFASCIYLSILLLLVIGFAIGF-VFATTKPLTDVQVVS 337 (387)
T ss_pred CcccCCcccCCCCCCCCCCCCCCCCcccccchhhhccccHHhhhhHHHHHHHHHHHHHHHHHHh-hhhcCcccccceEEE
Confidence 678899999874343322 111 11112333332 23333443 4444444444 44455664 4444 6
Q ss_pred EEEEEEee
Q 028071 66 INSITVQD 73 (214)
Q Consensus 66 v~~~~v~~ 73 (214)
|+++-.+.
T Consensus 338 I~NVlaS~ 345 (387)
T PF12751_consen 338 IQNVLASE 345 (387)
T ss_pred eeeeeecc
Confidence 66665543
No 69
>PF06446 Hepcidin: Hepcidin; InterPro: IPR010500 Hepcidin is a antibacterial and anti-fungal protein expressed in the liver and is also a signalling molecule in iron metabolism. The hepcidin protein is cysteine-rich and forms a distorted beta-sheet with an unusual disulphide bond found at the turn of the hairpin [].; GO: 0006879 cellular iron ion homeostasis, 0005576 extracellular region; PDB: 1M4E_A 2KEF_A 1M4F_A 3H0T_C 1S6W_A.
Probab=20.15 E-value=61 Score=21.09 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=5.6
Q ss_pred CcceeEeehH
Q 028071 29 HRKRNICIGI 38 (214)
Q Consensus 29 ~~~c~~C~~~ 38 (214)
...|..||-+
T Consensus 36 ~~~CrfCC~C 45 (57)
T PF06446_consen 36 LPICRFCCNC 45 (57)
T ss_dssp SS-EEEECSS
T ss_pred CccCcccccC
Confidence 3468877744
No 70
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.06 E-value=79 Score=25.66 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=16.2
Q ss_pred heeeEEEeeCCCeEEEEEEEE
Q 028071 51 ILALTVFKAKDPKTTINSITV 71 (214)
Q Consensus 51 ~i~~lv~rPk~P~~~v~~~~v 71 (214)
+++.+++.|+.|..++.+.+-
T Consensus 28 ~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 28 LIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HhheeeccCCCCCchhhccCc
Confidence 345678899998888887765
Done!