Query 028071
Match_columns 214
No_of_seqs 127 out of 762
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.9 6.9E-09 2.4E-13 82.2 8.3 103 60-175 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.6 4.4E-09 1.5E-13 81.6 1.0 102 60-174 20-123 (151)
3 3but_A Uncharacterized protein 98.3 3.4E-06 1.2E-10 64.1 9.6 91 88-181 17-108 (136)
4 3j1r_A Archaeal adhesion filam 48.9 6.2 0.00021 20.6 0.9 15 41-55 9-23 (26)
5 2l0d_A Cell surface protein; s 48.1 71 0.0024 22.6 9.0 51 90-144 20-70 (114)
6 3p5s_A CD38 molecule; cyclic A 34.8 8.2 0.00028 32.1 0.0 12 30-41 7-18 (278)
7 3idu_A Uncharacterized protein 28.4 1.4E+02 0.0047 21.4 5.8 49 90-143 34-82 (127)
8 3me0_B PAPG protein; immunoglo 25.7 1.9E+02 0.0066 21.0 6.0 69 57-126 9-89 (128)
9 3arc_T Photosystem II reaction 24.0 11 0.00037 20.8 -0.7 14 51-64 16-29 (32)
10 2xzz_A Protein-glutamine gamma 22.9 1.2E+02 0.0041 20.8 4.4 55 86-143 17-71 (102)
11 3qde_A Cellobiose phosphorylas 20.9 1.8E+02 0.006 27.7 6.5 58 55-130 742-799 (811)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.86 E-value=6.9e-09 Score=82.19 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=82.6
Q ss_pred CCCeEEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCC-ceecCCCceE
Q 028071 60 KDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPV-AKISADKTTA 138 (214)
Q Consensus 60 k~P~~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~t~~ 138 (214)
+.|++++.++++..++.. .++|.+.++++|||.+.+.+.+.+.++.-+|..++++..+. +.+++++++.
T Consensus 43 ~~PeV~v~~v~~~~~~l~----------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~ 112 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD----------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTV 112 (174)
T ss_dssp CCCEEEEEEEEEEEECSS----------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEE
T ss_pred CCCEEEEEEeEEeccccc----------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEE
Confidence 789999999999876543 35789999999999999999999999999999999999865 8999999999
Q ss_pred EEEEEEEEeeeecCCcchhccc-cCCcEEeEEEEEEEE
Q 028071 139 LNMTVTILANRFLSNPQLFSDA-TAGSMPMSTMAKVSG 175 (214)
Q Consensus 139 v~~~l~~~~~~l~~~~~l~~d~-~~g~v~l~v~~~~~~ 175 (214)
+.+++++....+ .++++++ ..+.+++++++++.+
T Consensus 113 v~Vpv~v~~~~l---~~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 113 LDVPVKVAYSIA---VSLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp EEEEEEESHHHH---HHTCCCCCSSEEECEEEEEEEEE
T ss_pred EEEEEEEEHHHH---HHHHHhcCCCCccceEEEEEEEe
Confidence 999988764323 2334455 345677776665543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.65 E-value=4.4e-09 Score=81.62 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=80.4
Q ss_pred CCCeEEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeC-CceecCCCceE
Q 028071 60 KDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIP-VAKISADKTTA 138 (214)
Q Consensus 60 k~P~~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~ 138 (214)
+.|++++.++++.+++.. .++|.+.++++|||.+++.+.+.+.++.-+|+.++++..+ ++.+++++++.
T Consensus 20 ~~P~v~v~~v~~~~~~~~----------~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~ 89 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD----------SVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTA 89 (151)
T ss_dssp CSCCCBCSEEEECCCTTT----------EECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEE
T ss_pred CCCEEEEEEeEEeccCcc----------eeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEE
Confidence 689999999988764432 3478899999999999999999999999999999999886 59999999999
Q ss_pred EEEEEEEEeeeecCCcchhccc-cCCcEEeEEEEEEE
Q 028071 139 LNMTVTILANRFLSNPQLFSDA-TAGSMPMSTMAKVS 174 (214)
Q Consensus 139 v~~~l~~~~~~l~~~~~l~~d~-~~g~v~l~v~~~~~ 174 (214)
+.+++++....+ .++.+++ ..+.+++++++++.
T Consensus 90 v~vpv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 90 LDIPVVVPYSIL---FNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EEECCCEEHHHH---HHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEEEHHHH---HHHHHhcccCCcccEEEEEEEE
Confidence 999987764222 3344444 35678877655554
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.33 E-value=3.4e-06 Score=64.12 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=67.4
Q ss_pred eEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceE-eCCceecCCCceEEEEEEEEEeeeecCCcchhccccCCcEE
Q 028071 88 NITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVP-IPVAKISADKTTALNMTVTILANRFLSNPQLFSDATAGSMP 166 (214)
Q Consensus 88 n~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~-vp~f~q~~~~t~~v~~~l~~~~~~l~~~~~l~~d~~~g~v~ 166 (214)
...|.+.++++|||.+.+.++..+..++.+|..+|++. ...+.+++++++.+.+++..+..++. +.+.+.+.+|.-
T Consensus 17 ~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~--~~~~~hi~nge~- 93 (136)
T 3but_A 17 QTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLR--EWWVTHIANGEK- 93 (136)
T ss_dssp EEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHT--THHHHHHHTTSE-
T ss_pred EEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhH--HHHHHHhhcCCc-
Confidence 34688999999999999999999999999999999987 57899999999999999888754443 234444444421
Q ss_pred eEEEEEEEEEEEEEe
Q 028071 167 MSTMAKVSGKVNIVG 181 (214)
Q Consensus 167 l~v~~~~~~~v~v~g 181 (214)
=+++++++.++.+.|
T Consensus 94 s~l~i~~~~~l~v~g 108 (136)
T 3but_A 94 TKIRVAIKPTIEIGG 108 (136)
T ss_dssp EEEEEEEEEEEECC-
T ss_pred eEEEEEEEEEEEeCC
Confidence 122344455566444
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=48.87 E-value=6.2 Score=20.55 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=8.1
Q ss_pred HHHHHHHHHHheeeE
Q 028071 41 SIVAIVLLIVILALT 55 (214)
Q Consensus 41 ~lill~~v~~~i~~l 55 (214)
.+|+++++++.++|+
T Consensus 9 lLIviav~aaVllyl 23 (26)
T 3j1r_A 9 LLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555554
No 5
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=48.12 E-value=71 Score=22.64 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=36.1
Q ss_pred EEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCCceecCCCceEEEEEEE
Q 028071 90 TLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAKISADKTTALNMTVT 144 (214)
Q Consensus 90 ~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~ 144 (214)
...+.++++|.-... =.++.+.++.+|..++...+++ ..++.++.+.++.+
T Consensus 20 ~~ti~atVkN~G~~~--a~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~~w~ 70 (114)
T 2l0d_A 20 VNTMTATIENQGNKD--STSFNVSLLVDGIVVDTQTVTS--LESENSTNVDFHWT 70 (114)
T ss_dssp EEEEEEEEEECSSSC--BCCEEEEEEETTEEEEEEEESC--BCBTCEEEEEEEEE
T ss_pred eEEEEEEEEECCCCC--CCCEEEEEEECCEEEcceeccc--ccCCCEEEEEEEEe
Confidence 456788999986522 1557788888999999988877 55566666666543
No 6
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=34.82 E-value=8.2 Score=32.14 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=0.0
Q ss_pred cceeEeehHHHH
Q 028071 30 RKRNICIGILVS 41 (214)
Q Consensus 30 ~~c~~C~~~~~~ 41 (214)
|++..|+++.+.
T Consensus 7 ~~~~~~l~~~~~ 18 (278)
T 3p5s_A 7 PRKKLCWCVLLF 18 (278)
T ss_dssp ------------
T ss_pred CceEEeehHHHH
Confidence 445556555554
No 7
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=28.35 E-value=1.4e+02 Score=21.43 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=35.7
Q ss_pred EEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCCceecCCCceEEEEEE
Q 028071 90 TLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAKISADKTTALNMTV 143 (214)
Q Consensus 90 ~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l 143 (214)
...+.++++|--... -++..+.++-+|..++...+ ...++.++.+.+..
T Consensus 34 ~~ti~vtV~N~G~~~--a~~~~V~lyvng~~v~t~~v---~La~G~s~tv~f~~ 82 (127)
T 3idu_A 34 LAEYEVHVKNLGGIG--VPSTKVRVYINGTLYKNWTV---SLGPKEEKVLTFNW 82 (127)
T ss_dssp CEEEEEEEEECSSSC--EEEEEEEEEETTEEEEEEEE---EECTTCEEEEEEEE
T ss_pred EEEEEEEEEECCCCc--cCCcEEEEEECCEEEeeEEe---ccCCCCeEEEEEEE
Confidence 456788888875533 35677888889999887655 37788887777765
No 8
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=25.70 E-value=1.9e+02 Score=20.95 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=35.1
Q ss_pred EeeCCCeEEEEEEEEeeEEeeecCcCc----ceeEeEEEEEEEEEEC--C-----CceeEEEec-eEEEEEECCEEEece
Q 028071 57 FKAKDPKTTINSITVQDVSIALDSARM----RVNLNITLDVNVGIKN--P-----NKVSMKLKK-GNADIMYRGDTVGVV 124 (214)
Q Consensus 57 ~rPk~P~~~v~~~~v~~~~~~~~~~~~----~~~ln~~l~~~v~v~N--P-----N~~~i~y~~-~~~~v~Y~g~~lg~~ 124 (214)
-||..|++.++.-.+..=++.....+. .....+++.+.++ .| | ..+++-.++ ....++-+|+..++.
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt-~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~ 87 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLL-RNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGET 87 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEE-ECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEE
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEe-cCCcccccccCceEEecCCCeEEEEEECCeeccce
Confidence 378888888876665432222110000 0112223333332 22 1 224555544 557777799988887
Q ss_pred Ee
Q 028071 125 PI 126 (214)
Q Consensus 125 ~v 126 (214)
.+
T Consensus 88 ~~ 89 (128)
T 3me0_B 88 TM 89 (128)
T ss_dssp EE
T ss_pred eE
Confidence 77
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.05 E-value=11 Score=20.81 Aligned_cols=14 Identities=14% Similarity=0.512 Sum_probs=6.8
Q ss_pred heeeEEEeeCCCeE
Q 028071 51 ILALTVFKAKDPKT 64 (214)
Q Consensus 51 ~i~~lv~rPk~P~~ 64 (214)
++++.++--.+|++
T Consensus 16 iiFFAI~FRePPri 29 (32)
T 3arc_T 16 LFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHTSCCCCC
T ss_pred HHHHhhhhcCCCCC
Confidence 33444444555554
No 10
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=22.88 E-value=1.2e+02 Score=20.84 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=34.5
Q ss_pred eEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCCceecCCCceEEEEEE
Q 028071 86 NLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAKISADKTTALNMTV 143 (214)
Q Consensus 86 ~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l 143 (214)
..+-.+.+.+++.|| +.+-..+..+.+-=.|-.=+ -.++-..++++++..+.+.+
T Consensus 17 ~v~~~l~v~vsf~NP--L~~~L~~c~~~vEG~GL~~~-~~~~~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 17 VVGQECEVQIVFKNP--LPVTLTNVVFRLEGSGLQRP-KILNVGDIGGNETVTLRQSF 71 (102)
T ss_dssp CSSSCEEEEEEEECC--SSSCBCSEEEEEEETTTEEE-EEEEECCBCTTCEEEEEEEE
T ss_pred ccCCeEEEEEEEECC--CCCcccCEEEEEECCCCCcc-eEEEcCcCCCCCEEEEEEEE
Confidence 455567889999999 55556666666655554333 23333447778776666553
No 11
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=20.87 E-value=1.8e+02 Score=27.65 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=34.2
Q ss_pred EEEeeCCCeEEEEEEEEeeEEeeecCcCcceeEeEEEEEEEEEECCCceeEEEeceEEEEEECCEEEeceEeCCce
Q 028071 55 TVFKAKDPKTTINSITVQDVSIALDSARMRVNLNITLDVNVGIKNPNKVSMKLKKGNADIMYRGDTVGVVPIPVAK 130 (214)
Q Consensus 55 lv~rPk~P~~~v~~~~v~~~~~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~ 130 (214)
+.+.|..|.. ...++++ +.+. +. .+.|+++||+... ....++.-+|+.+....+|-+.
T Consensus 742 L~i~P~LP~~-w~~~~~~-~~~~----------g~--~~~I~v~~~~~~~----~~~~~~~~dg~~~~~~~i~~~~ 799 (811)
T 3qde_A 742 LKIDPCIPKA-WDGYKVT-RYFR----------GS--TYEITVKNPNHVS----KGVAKITVDGNEISGNILPVFN 799 (811)
T ss_dssp EEECCBCCTT-CCEEEEE-EEET----------TE--EEEEEEECTTCCS----BCEEEEEETTEECSSSBCCCCC
T ss_pred EEEeCcCCcc-cCcEEEE-EEEC----------CE--EEEEEEEccCCCC----CCcEEEEECCEECcCCeeeecC
Confidence 4456776665 5555554 2332 11 3477788998632 2345677799988666676533
Done!