BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028074
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
          Length = 845

 Score = 30.0 bits (66), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 100 SFRTATGRLFYGVATFRGIWTFNGGRKKPCVPSDYRLRCADL------FHASLSLIAFLT 153
           +F+T  GR+ YG   F G   +   ++K   P  Y L           F  +   IA   
Sbjct: 682 NFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISV 741

Query: 154 --------LAGSHRDVVACYFPAMPRKITNTVPPLVGF 183
                    AGS  +VV  YF A+  K++  V  L GF
Sbjct: 742 DVKNTGDKFAGS--EVVQVYFSALNSKVSRPVKELKGF 777


>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
          Length = 845

 Score = 30.0 bits (66), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 100 SFRTATGRLFYGVATFRGIWTFNGGRKKPCVPSDYRLRCADL------FHASLSLIAFLT 153
           +F+T  GR+ YG   F G   +   ++K   P  Y L           F  +   IA   
Sbjct: 682 NFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISV 741

Query: 154 --------LAGSHRDVVACYFPAMPRKITNTVPPLVGF 183
                    AGS  +VV  YF A+  K++  V  L GF
Sbjct: 742 DVKNTGDKFAGS--EVVQVYFSALNSKVSRPVKELKGF 777


>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
 pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
          Length = 364

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 42  LSGTARLNVLLPTATILAFTILAPLLTNDGQCANLNRWLTGCFVVLLGASCVFFTFTD 99
           L+ TA  N ++    +  +     ++   G  AN++ W  GC +  L   CV F  TD
Sbjct: 172 LARTACTNFMMTPYVVTRYYRAPEVILGMGYAANVDIWSVGCIMGELVKGCVIFQGTD 229


>pdb|3LNN|A Chain A, Crystal Structure Of Zneb From Cupriavidus Metallidurans
 pdb|3LNN|B Chain B, Crystal Structure Of Zneb From Cupriavidus Metallidurans
          Length = 359

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 152 LTLAGSHRDVVACYF--PAM----PRKITNTVPPLVGFVISV 187
           L +A + R+ VA  F  PAM    P K+   +PPL G ++S+
Sbjct: 30  LAVAPATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSL 71


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.143    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,447,146
Number of Sequences: 62578
Number of extensions: 246986
Number of successful extensions: 489
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)