BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028074
         (214 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1RX88|IF5A_THEPD Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk
           5) GN=eIF5A PE=3 SV=1
          Length = 132

 Score = 36.6 bits (83), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 82  GCFVVLLGASCVFFTFTDSFRTATGRLFYGVATFRGIWTFNGGRKKPCVPSDYRLRCADL 141
           G F+V+ G  C      +  ++ TG+     A   GI  F+GG++   VP+D R+    +
Sbjct: 14  GSFIVIDGEPC---KVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPII 70

Query: 142 FHASLSLIAFL 152
              +  ++AF+
Sbjct: 71  KKFTAQVVAFV 81


>sp|A4WW89|DNAK_RHOS5 Chaperone protein DnaK OS=Rhodobacter sphaeroides (strain ATCC
           17025 / ATH 2.4.3) GN=dnaK PE=3 SV=1
          Length = 636

 Score = 35.8 bits (81), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 156 GSHRDVVACYFPAMPRKITN-----TVPPLVGFVISVLLVVFPSKRRGIGYP----FLLQ 206
           G+    VA    A PR I N     T P +VGF  S  LV  P+KR+ +  P    F ++
Sbjct: 10  GTTNSCVAIMDGAQPRVIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVK 69

Query: 207 RDALYGRR 214
           R  L GRR
Sbjct: 70  R--LIGRR 75


>sp|A3PNM1|DNAK_RHOS1 Chaperone protein DnaK OS=Rhodobacter sphaeroides (strain ATCC
           17029 / ATH 2.4.9) GN=dnaK PE=3 SV=1
          Length = 636

 Score = 35.4 bits (80), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 156 GSHRDVVACYFPAMPRKITN-----TVPPLVGFVISVLLVVFPSKRRGIGYP----FLLQ 206
           G+    VA    A PR I N     T P +VGF  S  LV  P+KR+ +  P    F ++
Sbjct: 10  GTTNSCVAIMDGAQPRVIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVK 69

Query: 207 RDALYGRR 214
           R  L GRR
Sbjct: 70  R--LIGRR 75


>sp|Q3IYM7|DNAK_RHOS4 Chaperone protein DnaK OS=Rhodobacter sphaeroides (strain ATCC
           17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaK PE=3 SV=1
          Length = 636

 Score = 35.4 bits (80), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 156 GSHRDVVACYFPAMPRKITN-----TVPPLVGFVISVLLVVFPSKRRGIGYP----FLLQ 206
           G+    VA    A PR I N     T P +VGF  S  LV  P+KR+ +  P    F ++
Sbjct: 10  GTTNSCVAIMDGAQPRVIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVK 69

Query: 207 RDALYGRR 214
           R  L GRR
Sbjct: 70  R--LIGRR 75


>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
           discoideum GN=pggt1b PE=2 SV=1
          Length = 352

 Score = 35.4 bits (80), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 36  YVINAILSGTARLNVLLPTATILAFTILAPLLTNDGQCANLNRWLTGCFVVLLGASCVFF 95
           Y   A LS   RL+VL P    L F ++   +T  G C   N+    C+   +GAS +  
Sbjct: 218 YCAIASLSLLGRLDVLEPFKEQLTFWLVKKQIT--GFCGRTNKDPDTCYAFWIGASLMMI 275

Query: 96  TFTDSFRTATGRLFYGVATFRGIWTFNGGRKKPCVPSDYRLRCADLFHASLSLIAF 151
              D    A+   F G A    I    G  K+P        +  D+ H+ LSL+  
Sbjct: 276 DRYDLIDFASINAFIGSAQHEAI---GGVAKEPG-------QLPDVMHSYLSLVGL 321


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.143    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,542,773
Number of Sequences: 539616
Number of extensions: 3179249
Number of successful extensions: 8189
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8189
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)