Query 028074
Match_columns 214
No_of_seqs 109 out of 119
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05078 DUF679: Protein of un 100.0 3.2E-84 7E-89 543.9 13.5 160 42-201 1-170 (170)
2 PF13127 DUF3955: Protein of u 58.2 7.7 0.00017 28.2 1.9 33 77-109 2-35 (63)
3 KOG4833 Uncharacterized conser 48.5 6.9 0.00015 38.7 0.5 43 137-188 499-547 (573)
4 PF10894 DUF2689: Protein of u 39.7 14 0.0003 27.3 0.8 9 139-147 21-29 (61)
5 PRK13724 conjugal transfer pro 34.4 19 0.0004 26.8 0.8 9 139-147 21-29 (65)
6 PF15601 Imm42: Immunity prote 33.3 25 0.00053 29.3 1.4 23 130-152 6-28 (134)
7 PF11395 DUF2873: Protein of u 23.9 74 0.0016 21.9 2.2 23 135-157 3-25 (43)
8 PLN02667 inositol polyphosphat 23.0 45 0.00097 30.6 1.3 30 116-145 218-249 (286)
9 PF03770 IPK: Inositol polypho 22.4 1.1E+02 0.0025 25.8 3.6 76 61-146 85-175 (197)
10 PRK04989 psbM photosystem II r 22.0 13 0.00027 24.9 -1.8 14 181-194 6-19 (35)
11 PF15623 CT47: Cancer/testis g 21.5 39 0.00085 31.5 0.7 19 132-150 114-132 (279)
12 PF13511 DUF4124: Domain of un 21.5 61 0.0013 22.0 1.5 14 102-115 19-32 (60)
13 CHL00080 psbM photosystem II p 21.4 14 0.00029 24.6 -1.7 15 181-195 6-20 (34)
No 1
>PF05078 DUF679: Protein of unknown function (DUF679); InterPro: IPR007770 This family contains uncharacterised plant proteins of unknown function.
Probab=100.00 E-value=3.2e-84 Score=543.88 Aligned_cols=160 Identities=51% Similarity=0.949 Sum_probs=155.4
Q ss_pred HHHHHhhhhhCchhHHHHHHHhhcccccCCcccchhHHHHHHHHHHhhhhhceeeccceeecCCCcEEEEEEeccceeee
Q 028074 42 LSGTARLNVLLPTATILAFTILAPLLTNDGQCANLNRWLTGCFVVLLGASCVFFTFTDSFRTATGRLFYGVATFRGIWTF 121 (214)
Q Consensus 42 lssta~LakLLPTGTvLaFQ~LsP~~TN~G~C~~~nr~Lt~~Ll~lca~sCff~sFTDS~~~~dGkvyYG~aT~~Gl~~f 121 (214)
|+++|||+|||||||||+||+|+|++||||+|+++|||||++||++||+||||+||||||+|+|||+|||+||+||||+|
T Consensus 1 ls~ta~La~LLPTGTvlaFq~L~P~~Tn~G~C~~~nr~lt~~Ll~lca~sC~f~sFTDS~~~~dGkvyYG~aT~~Gl~~f 80 (170)
T PF05078_consen 1 LSSTANLAKLLPTGTVLAFQILSPSFTNNGECDTANRWLTAALLALCAASCFFFSFTDSFRGSDGKVYYGFATPRGLWVF 80 (170)
T ss_pred CccHHHHHHhCcchHHHHHHHhhhhcccCCccCcchHHHHHHHHHHHHHHHHHeeecceeECCCCCEEEEEEEcccceec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c------CC-CCCCCCCCCcccccchhhhhHHHHHHHHHHHhccCCcceeeCCCcc---hhhhhhcCchhHhhhheeeee
Q 028074 122 N------GG-RKKPCVPSDYRLRCADLFHASLSLIAFLTLAGSHRDVVACYFPAMP---RKITNTVPPLVGFVISVLLVV 191 (214)
Q Consensus 122 ~------~~-~~~~~~~s~yrLr~~DfVHA~lS~~VF~avAl~D~nvv~CffP~~~---~evl~~lPl~vG~~~S~vF~i 191 (214)
| |+ +.++++++||||||+|||||+||++||++||++|+|||+||||.++ ||+++++|++||++||+|||+
T Consensus 81 ~~~~~~~g~~~~~~~~~~~yrlr~~DfvHA~lS~~VF~aval~d~~v~~Cf~P~~~~~~~~~l~~lP~~vG~~~S~vF~~ 160 (170)
T PF05078_consen 81 NYPGPEEGGGELKPRDLSKYRLRFIDFVHAFLSVVVFLAVALSDQNVVSCFFPSPSSETKEVLMNLPLGVGVLCSMVFMI 160 (170)
T ss_pred CCCCccccccCCCccccccceEehhhhhHHHHHHHHHHHhheeCCCcceecCCCCchhHHHHHHHhHHHHHHhHeeEEEE
Confidence 9 33 3467899999999999999999999999999999999999999998 999999999999999999999
Q ss_pred cCCCCcccCC
Q 028074 192 FPSKRRGIGY 201 (214)
Q Consensus 192 FPt~RhGIGy 201 (214)
|||+||||||
T Consensus 161 FPt~R~GIGy 170 (170)
T PF05078_consen 161 FPTTRHGIGY 170 (170)
T ss_pred CCCCCCCCCC
Confidence 9999999998
No 2
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=58.24 E-value=7.7 Score=28.24 Aligned_cols=33 Identities=24% Similarity=0.603 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhhhhhceee-ccceeecCCCcEE
Q 028074 77 NRWLTGCFVVLLGASCVFFT-FTDSFRTATGRLF 109 (214)
Q Consensus 77 nr~Lt~~Ll~lca~sCff~s-FTDS~~~~dGkvy 109 (214)
+++..+.++.+.++.|++.. ...||+|+||-++
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~ 35 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLH 35 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEe
Confidence 46778888889999998764 5669999999775
No 3
>KOG4833 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.51 E-value=6.9 Score=38.67 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=29.2
Q ss_pred ccchhhhhHHHHHHHHHHHhccCCcceeeCCCcc------hhhhhhcCchhHhhhhee
Q 028074 137 RCADLFHASLSLIAFLTLAGSHRDVVACYFPAMP------RKITNTVPPLVGFVISVL 188 (214)
Q Consensus 137 r~~DfVHA~lS~~VF~avAl~D~nvv~CffP~~~------~evl~~lPl~vG~~~S~v 188 (214)
+.+||+||+- ++|-|...||||..+ ....+.+-.-|-++|+-|
T Consensus 499 piidfnhaVc---------fsdLnIadcflpieSringklerdtrVisppvDiIancV 547 (573)
T KOG4833|consen 499 PIIDFNHAVC---------FSDLNIADCFLPIESRINGKLERDTRVISPPVDIIANCV 547 (573)
T ss_pred HHHHHHHHHH---------HhcccHhHheehhHhhhhhhhhccceeecCchHHHHhhh
Confidence 4578888754 589999999999987 333444444456666543
No 4
>PF10894 DUF2689: Protein of unknown function (DUF2689); InterPro: IPR024396 Members of this protein family are annotated as conjugal transfer protein TrbD; however, currently no function is known.
Probab=39.66 E-value=14 Score=27.28 Aligned_cols=9 Identities=56% Similarity=0.800 Sum_probs=7.9
Q ss_pred chhhhhHHH
Q 028074 139 ADLFHASLS 147 (214)
Q Consensus 139 ~DfVHA~lS 147 (214)
-||+||++|
T Consensus 21 DDFmhaVlS 29 (61)
T PF10894_consen 21 DDFMHAVLS 29 (61)
T ss_pred HHHHHHHHh
Confidence 499999998
No 5
>PRK13724 conjugal transfer protein TrbD; Provisional
Probab=34.38 E-value=19 Score=26.84 Aligned_cols=9 Identities=56% Similarity=0.800 Sum_probs=7.9
Q ss_pred chhhhhHHH
Q 028074 139 ADLFHASLS 147 (214)
Q Consensus 139 ~DfVHA~lS 147 (214)
-||+||++|
T Consensus 21 DDF~h~VlS 29 (65)
T PRK13724 21 DDFMHAVLS 29 (65)
T ss_pred HHHHHHHHh
Confidence 499999987
No 6
>PF15601 Imm42: Immunity protein 42
Probab=33.31 E-value=25 Score=29.34 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.1
Q ss_pred CCCCcccccchhhhhHHHHHHHH
Q 028074 130 VPSDYRLRCADLFHASLSLIAFL 152 (214)
Q Consensus 130 ~~s~yrLr~~DfVHA~lS~~VF~ 152 (214)
+..-|.+.-.||||+|+|.+..-
T Consensus 6 ~~~~~eiG~~dfl~sFFsti~~~ 28 (134)
T PF15601_consen 6 GFSWYEIGPPDFLHSFFSTISYR 28 (134)
T ss_pred CceEEEeCCHHHHHHHHHHHHHH
Confidence 34668999999999999998654
No 7
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=23.87 E-value=74 Score=21.91 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.7
Q ss_pred ccccchhhhhHHHHHHHHHHHhc
Q 028074 135 RLRCADLFHASLSLIAFLTLAGS 157 (214)
Q Consensus 135 rLr~~DfVHA~lS~~VF~avAl~ 157 (214)
.|+..||--.++|.+.|+++.+.
T Consensus 3 ~ltl~dfylc~l~~llflv~iml 25 (43)
T PF11395_consen 3 HLTLFDFYLCFLSFLLFLVIIML 25 (43)
T ss_pred ceehhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998763
No 8
>PLN02667 inositol polyphosphate multikinase
Probab=23.05 E-value=45 Score=30.62 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=20.8
Q ss_pred cceeeecCCCC--CCCCCCCcccccchhhhhH
Q 028074 116 RGIWTFNGGRK--KPCVPSDYRLRCADLFHAS 145 (214)
Q Consensus 116 ~Gl~~f~~~~~--~~~~~s~yrLr~~DfVHA~ 145 (214)
.=|.+++|... ......+.++|++||-|++
T Consensus 218 SLLivYDg~~~~~~~~~~~~v~VkmIDFAH~~ 249 (286)
T PLN02667 218 SILIVYEGEAILKGNPEDSRVEVKLVDFAHVL 249 (286)
T ss_pred EEEEEEcCCccccccCCCCcceEEEEeCcccc
Confidence 33777887632 1123468999999999985
No 9
>PF03770 IPK: Inositol polyphosphate kinase ; InterPro: IPR005522 ArgRIII has been demonstrated to be an inositol polyphosphate kinase [] which catalyses the reaction ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate .; GO: 0008440 inositol trisphosphate 3-kinase activity; PDB: 2IF8_B 2IEW_B 1W2C_A 1W2F_A 1W2D_A 2A98_A 2AQX_A 1TZD_A.
Probab=22.38 E-value=1.1e+02 Score=25.80 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=34.2
Q ss_pred HHhhcccccCCcccchhHHHHHHHHHHhhhhhceeeccceeecCCCcEEEEEEeccceeeecCCC---------------
Q 028074 61 TILAPLLTNDGQCANLNRWLTGCFVVLLGASCVFFTFTDSFRTATGRLFYGVATFRGIWTFNGGR--------------- 125 (214)
Q Consensus 61 Q~LsP~~TN~G~C~~~nr~Lt~~Ll~lca~sCff~sFTDS~~~~dGkvyYG~aT~~Gl~~f~~~~--------------- 125 (214)
+.|...|.+++.-....+.+..++--|-.+--+|-.-+. |=|....=|.+++|..
T Consensus 85 ~~l~~Ff~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~----------~~f~sSSLLivYd~~~~~~~~~~~~~~~~~~ 154 (197)
T PF03770_consen 85 DALKKFFNNGSSPRRRRELLRSILKQLEQLREWFESQRS----------FRFYSSSLLIVYDGDPSRLENESSSSSTSTS 154 (197)
T ss_dssp HHHHHHHT-TT-HHTHHHHHHHHHHHHHHHHHHHCC-CC----------EEEESEEEEEEEETTHHHHHHC---------
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhccc----------CeeecceEEEEEcCCcccccccccccccccc
Confidence 344444444432222344444555555555555544333 2222222266777661
Q ss_pred CCCCCCCCcccccchhhhhHH
Q 028074 126 KKPCVPSDYRLRCADLFHASL 146 (214)
Q Consensus 126 ~~~~~~s~yrLr~~DfVHA~l 146 (214)
........+++|++||.|+..
T Consensus 155 ~~~~~~~~~~vklIDFAH~~~ 175 (197)
T PF03770_consen 155 DSDDPPNKVDVKLIDFAHVFP 175 (197)
T ss_dssp ------S-EEEEEE--TTEEE
T ss_pred cccCCCCcccEEEEECCCccc
Confidence 123345789999999999976
No 10
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=21.99 E-value=13 Score=24.89 Aligned_cols=14 Identities=50% Similarity=1.008 Sum_probs=11.8
Q ss_pred hHhhhheeeeecCC
Q 028074 181 VGFVISVLLVVFPS 194 (214)
Q Consensus 181 vG~~~S~vF~iFPt 194 (214)
.|++++.+|+..||
T Consensus 6 lgfiAt~Lfi~iPt 19 (35)
T PRK04989 6 LGFVASLLFVLVPT 19 (35)
T ss_pred HHHHHHHHHHHHHH
Confidence 48888999988886
No 11
>PF15623 CT47: Cancer/testis gene family 47
Probab=21.52 E-value=39 Score=31.50 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.0
Q ss_pred CCcccccchhhhhHHHHHH
Q 028074 132 SDYRLRCADLFHASLSLIA 150 (214)
Q Consensus 132 s~yrLr~~DfVHA~lS~~V 150 (214)
..||+.|+|.||++|-=+-
T Consensus 114 aGfR~~fLDLVhslL~RiY 132 (279)
T PF15623_consen 114 AGFRFMFLDLVHSLLNRIY 132 (279)
T ss_pred ccceeeHHHHHHHHHHHHh
Confidence 4699999999999887654
No 12
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=21.50 E-value=61 Score=21.99 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=10.6
Q ss_pred ecCCCcEEEEEEec
Q 028074 102 RTATGRLFYGVATF 115 (214)
Q Consensus 102 ~~~dGkvyYG~aT~ 115 (214)
+|++|+++|.=.=+
T Consensus 19 ~D~~G~v~ysd~P~ 32 (60)
T PF13511_consen 19 VDENGVVHYSDTPP 32 (60)
T ss_pred ECCCCCEEECccCC
Confidence 57899999975543
No 13
>CHL00080 psbM photosystem II protein M
Probab=21.38 E-value=14 Score=24.62 Aligned_cols=15 Identities=20% Similarity=0.731 Sum_probs=12.4
Q ss_pred hHhhhheeeeecCCC
Q 028074 181 VGFVISVLLVVFPSK 195 (214)
Q Consensus 181 vG~~~S~vF~iFPt~ 195 (214)
.|++++.+|+..||-
T Consensus 6 lgfiAt~LFi~iPt~ 20 (34)
T CHL00080 6 LAFIATALFILVPTA 20 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 588999999988873
Done!