Query 028074
Match_columns 214
No_of_seqs 109 out of 119
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4frf_A Inositol polyphosphate 36.5 9.3 0.00032 32.9 0.6 28 118-145 212-241 (275)
2 1k2d_P MBP peptide, myelin bas 29.7 15 0.0005 22.1 0.5 12 192-203 10-21 (26)
3 2le2_A P56; UDG inhibition, DN 18.2 56 0.0019 22.6 1.7 23 97-121 6-34 (56)
4 1e0l_A Formin binding protein; 18.1 56 0.0019 20.0 1.6 10 101-110 11-20 (37)
5 1wr4_A Ubiquitin-protein ligas 17.8 53 0.0018 19.4 1.4 10 101-110 12-21 (36)
6 3dac_P Cellular tumor antigen 17.8 24 0.00081 20.4 -0.2 15 45-59 3-17 (21)
7 1e0m_A Wwprototype; SH3 protot 17.5 60 0.002 19.3 1.6 10 102-111 12-21 (37)
8 2ysh_A GAS-7, growth-arrest-sp 15.9 69 0.0023 19.5 1.6 9 102-110 16-24 (40)
9 1ymz_A CC45; artificial protei 15.2 72 0.0025 19.8 1.6 10 102-111 17-26 (43)
10 1wr3_A Ubiquitin-protein ligas 15.0 68 0.0023 19.1 1.4 9 102-110 13-21 (36)
No 1
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=36.54 E-value=9.3 Score=32.94 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=18.2
Q ss_pred eeeecCCCC--CCCCCCCcccccchhhhhH
Q 028074 118 IWTFNGGRK--KPCVPSDYRLRCADLFHAS 145 (214)
Q Consensus 118 l~~f~~~~~--~~~~~s~yrLr~~DfVHA~ 145 (214)
|.+++|... ......+.++|.+||.|++
T Consensus 212 L~vYD~~~~~~~~~~~~~~~vrmIDFAh~~ 241 (275)
T 4frf_A 212 LMVYENESILKGNDDDARPQVKLVDFAHVL 241 (275)
T ss_dssp EEEEECCC-------CCCCEEEEECCTTCE
T ss_pred eeEecCcccccccCCCCcccEEEEECCCCC
Confidence 667777632 2234578899999999974
No 2
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=29.67 E-value=15 Score=22.06 Aligned_cols=12 Identities=42% Similarity=0.548 Sum_probs=9.1
Q ss_pred cCCCCcccCCCC
Q 028074 192 FPSKRRGIGYPF 203 (214)
Q Consensus 192 FPt~RhGIGyp~ 203 (214)
=|+.|||-|--.
T Consensus 10 rpsqrhg~gsgs 21 (26)
T 1k2d_P 10 RPSQRHGTGSGS 21 (26)
T ss_pred CccccccCCCCc
Confidence 389999988543
No 3
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=18.17 E-value=56 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=16.4
Q ss_pred cccee------ecCCCcEEEEEEeccceeee
Q 028074 97 FTDSF------RTATGRLFYGVATFRGIWTF 121 (214)
Q Consensus 97 FTDS~------~~~dGkvyYG~aT~~Gl~~f 121 (214)
|-||| +|.||+-||-.- +||...
T Consensus 6 f~dsy~~t~ll~dddg~q~~e~h--~glsls 34 (56)
T 2le2_A 6 FVDSYDVTMLLQDDDGKQYYEYH--KGLSLS 34 (56)
T ss_dssp SCSSEEEEEEEECTTSCEEEEEE--EEECHH
T ss_pred cccceeEEEEEEcCCCceeeeee--cCcccc
Confidence 66776 578999999764 566543
No 4
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=18.12 E-value=56 Score=19.99 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=7.5
Q ss_pred eecCCCcEEE
Q 028074 101 FRTATGRLFY 110 (214)
Q Consensus 101 ~~~~dGkvyY 110 (214)
.++.||+.||
T Consensus 11 ~~~~~G~~YY 20 (37)
T 1e0l_A 11 YKTADGKTYY 20 (37)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCCEEE
Confidence 3567899887
No 5
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=17.80 E-value=53 Score=19.39 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=7.6
Q ss_pred eecCCCcEEE
Q 028074 101 FRTATGRLFY 110 (214)
Q Consensus 101 ~~~~dGkvyY 110 (214)
.++++|++||
T Consensus 12 ~~d~~g~~Yy 21 (36)
T 1wr4_A 12 RKDAKGRTYY 21 (36)
T ss_dssp EECSSSCEEE
T ss_pred EECCCCCEEE
Confidence 3567899988
No 6
>3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=17.79 E-value=24 Score=20.39 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=12.2
Q ss_pred HHhhhhhCchhHHHH
Q 028074 45 TARLNVLLPTATILA 59 (214)
Q Consensus 45 ta~LakLLPTGTvLa 59 (214)
-+.|-||||.+++|.
T Consensus 3 FS~l~kLLp~~~~ls 17 (21)
T 3dac_P 3 FSDLWKLLPENNVLS 17 (26)
T ss_pred cchhhhhCCccceec
Confidence 357889999999875
No 7
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=17.54 E-value=60 Score=19.31 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=7.5
Q ss_pred ecCCCcEEEE
Q 028074 102 RTATGRLFYG 111 (214)
Q Consensus 102 ~~~dGkvyYG 111 (214)
.+.+|++||=
T Consensus 12 ~~~~G~~Yy~ 21 (37)
T 1e0m_A 12 KTHNGKTYYY 21 (37)
T ss_dssp ECSSCCEEEE
T ss_pred ECCCCCEEEE
Confidence 4568999884
No 8
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=15.89 E-value=69 Score=19.54 Aligned_cols=9 Identities=33% Similarity=0.800 Sum_probs=7.3
Q ss_pred ecCCCcEEE
Q 028074 102 RTATGRLFY 110 (214)
Q Consensus 102 ~~~dGkvyY 110 (214)
++.+|++||
T Consensus 16 ~d~~Gr~YY 24 (40)
T 2ysh_A 16 LSPQGRRYY 24 (40)
T ss_dssp ECTTSCEEE
T ss_pred ECCCCCEEE
Confidence 567899998
No 9
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=15.24 E-value=72 Score=19.80 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=7.7
Q ss_pred ecCCCcEEEE
Q 028074 102 RTATGRLFYG 111 (214)
Q Consensus 102 ~~~dGkvyYG 111 (214)
++++|++||=
T Consensus 17 ~~~~Gr~YY~ 26 (43)
T 1ymz_A 17 TDVEGKVYYF 26 (43)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCCEEEE
Confidence 4578999983
No 10
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=15.01 E-value=68 Score=19.12 Aligned_cols=9 Identities=33% Similarity=0.715 Sum_probs=7.3
Q ss_pred ecCCCcEEE
Q 028074 102 RTATGRLFY 110 (214)
Q Consensus 102 ~~~dGkvyY 110 (214)
.+.+|++||
T Consensus 13 ~d~~G~~Yy 21 (36)
T 1wr3_A 13 VDNLGRTYY 21 (36)
T ss_dssp ECSSSCEEE
T ss_pred ECCCCCEEE
Confidence 457899998
Done!