Query 028074
Match_columns 214
No_of_seqs 109 out of 119
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 09:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028074.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028074hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o6wa1 b.72.1.1 (A:1-29) Spli 48.1 4.1 0.0003 23.5 1.7 10 101-110 7-16 (29)
2 d1ywia1 b.72.1.1 (A:15-42) Hun 47.3 3.4 0.00025 23.7 1.2 10 101-110 6-15 (28)
3 d2rm0w1 b.72.1.1 (W:1-37) Form 40.6 6.1 0.00045 23.7 1.7 10 101-110 11-20 (37)
4 d1o6wa2 b.72.1.1 (A:30-75) Spl 39.4 6.3 0.00046 24.8 1.7 11 101-111 19-29 (46)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 21.3 3.2 0.00023 25.3 -2.2 14 181-194 6-19 (36)
6 d2jmfa1 b.72.1.1 (A:521-553) U 18.4 24 0.0018 20.3 1.4 11 101-111 10-20 (33)
7 d2dk1a1 b.72.1.1 (A:7-44) WW d 17.9 14 0.001 22.1 0.3 10 101-110 6-15 (38)
8 d2ogqa1 d.223.1.2 (A:371-494) 15.6 12 0.0009 27.4 -0.5 18 194-211 48-65 (124)
9 d1mu2a1 c.55.3.1 (A:430-555) H 14.4 50 0.0037 22.4 2.6 27 95-121 9-36 (126)
10 d1aopa2 d.58.36.1 (A:346-425) 13.6 40 0.0029 22.4 1.8 18 102-119 5-22 (80)
No 1
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.12 E-value=4.1 Score=23.54 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=8.5
Q ss_pred eecCCCcEEE
Q 028074 101 FRTATGRLFY 110 (214)
Q Consensus 101 ~~~~dGkvyY 110 (214)
++++||++||
T Consensus 7 ~~~~~G~~YY 16 (29)
T d1o6wa1 7 AKDASGRIYY 16 (29)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 5789999988
No 2
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.33 E-value=3.4 Score=23.71 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=8.3
Q ss_pred eecCCCcEEE
Q 028074 101 FRTATGRLFY 110 (214)
Q Consensus 101 ~~~~dGkvyY 110 (214)
.+++||++||
T Consensus 6 ~~~~~G~~YY 15 (28)
T d1ywia1 6 HKSPDGRTYY 15 (28)
T ss_dssp EEETTTEEEE
T ss_pred EECCCCCEEE
Confidence 4678999988
No 3
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}
Probab=40.57 E-value=6.1 Score=23.66 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=8.4
Q ss_pred eecCCCcEEE
Q 028074 101 FRTATGRLFY 110 (214)
Q Consensus 101 ~~~~dGkvyY 110 (214)
++++||++||
T Consensus 11 ~~~~~Gr~YY 20 (37)
T d2rm0w1 11 YKTADGKTYY 20 (37)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 4678999998
No 4
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.42 E-value=6.3 Score=24.79 Aligned_cols=11 Identities=36% Similarity=0.766 Sum_probs=8.7
Q ss_pred eecCCCcEEEE
Q 028074 101 FRTATGRLFYG 111 (214)
Q Consensus 101 ~~~~dGkvyYG 111 (214)
++++||++||=
T Consensus 19 ~~~~~Gr~YYy 29 (46)
T d1o6wa2 19 AKTADGKVYYY 29 (46)
T ss_dssp EECTTCCEEEE
T ss_pred EECCCCCEEEE
Confidence 46789999983
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.29 E-value=3.2 Score=25.33 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=12.3
Q ss_pred hHhhhheeeeecCC
Q 028074 181 VGFVISVLLVVFPS 194 (214)
Q Consensus 181 vG~~~S~vF~iFPt 194 (214)
.|++++.+|++.||
T Consensus 6 Lg~iAt~LFilvPt 19 (36)
T d2axtm1 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999886
No 6
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=18.37 E-value=24 Score=20.34 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=8.4
Q ss_pred eecCCCcEEEE
Q 028074 101 FRTATGRLFYG 111 (214)
Q Consensus 101 ~~~~dGkvyYG 111 (214)
..+.+|++||-
T Consensus 10 ~~d~~G~~Yyi 20 (33)
T d2jmfa1 10 RYTAAGERFFV 20 (33)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 35689999983
No 7
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.88 E-value=14 Score=22.13 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=7.3
Q ss_pred eecCCCcEEE
Q 028074 101 FRTATGRLFY 110 (214)
Q Consensus 101 ~~~~dGkvyY 110 (214)
.+++||++||
T Consensus 6 ~~~~~G~~YY 15 (38)
T d2dk1a1 6 GITSEGYHYY 15 (38)
T ss_dssp CCCSTTCCCE
T ss_pred EECCCCCEEE
Confidence 3567998876
No 8
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.60 E-value=12 Score=27.45 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=13.6
Q ss_pred CCCcccCCCCCCCccccc
Q 028074 194 SKRRGIGYPFLLQRDALY 211 (214)
Q Consensus 194 t~RhGIGyp~~~~~~~~~ 211 (214)
|++|||||.++.++--++
T Consensus 48 S~KyGlgY~LSdgtvGV~ 65 (124)
T d2ogqa1 48 SDKYGLGYQLCDNSVGVL 65 (124)
T ss_dssp TTTTEEEEEETTSCEEEE
T ss_pred CCCceEEEEEcCCcEEEE
Confidence 788999998887765443
No 9
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=14.45 E-value=50 Score=22.39 Aligned_cols=27 Identities=26% Similarity=0.100 Sum_probs=19.3
Q ss_pred eeccc-eeecCCCcEEEEEEeccceeee
Q 028074 95 FTFTD-SFRTATGRLFYGVATFRGIWTF 121 (214)
Q Consensus 95 ~sFTD-S~~~~dGkvyYG~aT~~Gl~~f 121 (214)
.-||| |.+...|.-.+|++.+.|=+.+
T Consensus 9 t~YTDGS~~~n~~~~~~g~~~~~~~~~~ 36 (126)
T d1mu2a1 9 TFYTDGSCNRQSKEGKAGYVTDRGKDKV 36 (126)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCEEE
T ss_pred EEEEcCCCCCCCCcEEEEEEecCCCEEE
Confidence 46899 7776667788888888774433
No 10
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=13.64 E-value=40 Score=22.35 Aligned_cols=18 Identities=6% Similarity=-0.053 Sum_probs=15.3
Q ss_pred ecCCCcEEEEEEecccee
Q 028074 102 RTATGRLFYGVATFRGIW 119 (214)
Q Consensus 102 ~~~dGkvyYG~aT~~Gl~ 119 (214)
++.||+-|||+.-|.|--
T Consensus 5 ~~~dG~~~~gl~v~~GRi 22 (80)
T d1aopa2 5 KGIDDNWHLTLFIENGRI 22 (80)
T ss_dssp ECSTTEEEEEECCGGGEE
T ss_pred CCCCCCEEEEEEecCccc
Confidence 467999999999999844
Done!