BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028075
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PQ8|A Chain A, Myst Histone Acetyltransferase 1
          Length = 278

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 5   ESTLSSPQSQRPIDDITTVSYKSESVDPILENIKSLK 41
           EST+ SP+  +P+ D+  +SY+S     +LEN++  +
Sbjct: 172 ESTVGSPE--KPLSDLGKLSYRSYWSWVLLENLRDFR 206


>pdb|2GIV|A Chain A, Human Myst Histone Acetyltransferase 1
          Length = 295

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 5   ESTLSSPQSQRPIDDITTVSYKSESVDPILENIKSLK 41
           EST+ SP+  +P+ D+  +SY+S     +LEN++  +
Sbjct: 189 ESTVGSPE--KPLSDLGKLSYRSYWSWVLLENLRDFR 223


>pdb|4H7X|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
           Motif Of Human Dual Specificity Protein Kinase Mps1
 pdb|4H7X|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
           Motif Of Human Dual Specificity Protein Kinase Mps1
 pdb|4H7Y|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
           Motif Of Human Dual Specificity Protein Kinase Mps1
 pdb|4H7Y|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
           Motif Of Human Dual Specificity Protein Kinase Mps1
 pdb|4H7Y|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
           Motif Of Human Dual Specificity Protein Kinase Mps1
 pdb|4H7Y|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
           Motif Of Human Dual Specificity Protein Kinase Mps1
          Length = 161

 Score = 27.3 bits (59), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 105 ENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHA-LQVEIGELKG 151
           +N + ++DAL  KL+ R+  ++ A+       +E  A +QV   ELK 
Sbjct: 25  KNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.123    0.321 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,250,868
Number of Sequences: 62578
Number of extensions: 117522
Number of successful extensions: 363
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 18
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)