BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028075
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UIF3|TEKT2_HUMAN Tektin-2 OS=Homo sapiens GN=TEKT2 PE=1 SV=1
Length = 430
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 77 KVLLELFSMYRD--WQEEKA-KQISKRQEEIENKIEVADALATKLL-----------QRF 122
K L E+ +Y + WQE+ ++I++ QE+I + + + L TKLL + +
Sbjct: 267 KRLREMEKVYSELKWQEKNTLEEIAELQEDIRH---LEEDLRTKLLSLKLSHTRLEARTY 323
Query: 123 GYSVSAMKTSSQH--LSEVHALQVEIGELKGRLTEVISNCDALCKRIA 168
+V + +Q+ EVH L+ I LK +L + DALCK +A
Sbjct: 324 RPNVELCRDQAQYGLTDEVHQLEATIAALKQKLAQAQDALDALCKHLA 371
>sp|Q9Z6M3|AROB_CHLPN 3-dehydroquinate synthase OS=Chlamydia pneumoniae GN=aroB PE=3
SV=2
Length = 380
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 8 LSSPQSQRPIDDITTVSYKSESVDPILENIKSLKITTPILTSPP 51
SS + P+ IT VS + + PIL++IK L +LT PP
Sbjct: 25 FSSISTAYPLVIITDVSVQQHLLGPILDHIKMLGYQVIVLTFPP 68
>sp|Q10198|NDC80_SCHPO Kinetochore protein ndc80 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ndc80 PE=1 SV=1
Length = 624
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 134 QHLSEVHALQVEI-GELKG---RLTEVISNCDALCKRIAAEGPDSLKASIKPLAVTTTRS 189
+H+ V+ L E+ EL+G RLT V+S C+ L + A+E ++ A L +
Sbjct: 489 EHVDTVNDLIAELQDELRGIESRLTSVLSECNML-RETASEEKNAFDAESDKLERELQQL 547
Query: 190 EVSCSSSSLQKDDKLESSSTEG 211
++S +S LQ D +++S + E
Sbjct: 548 KLSSHNSMLQLDQRIQSINIEA 569
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica
GN=DCL4 PE=2 SV=1
Length = 1657
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 3 ASESTLSSPQSQRPIDDITTVSYKSESVDPILENIKS-LKITTPILTSPPPTESSLTD-I 60
A E LSSP + PID SY S +L+ I S + ++ SP D I
Sbjct: 841 AVERCLSSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGI 900
Query: 61 LVRRSSTSSASGTVNPKVLLELFSMYRDWQEE---KAKQISKRQEEIENKI-EVADALAT 116
L ++ S SG + E F + E+ KAKQI + + N++ E ++
Sbjct: 901 LDEINAWSEHSGATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGR 960
Query: 117 KLLQRF 122
+LL+ F
Sbjct: 961 ELLEHF 966
>sp|A9WTZ3|DNLJ_RENSM DNA ligase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM
20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) GN=ligA
PE=3 SV=1
Length = 758
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 97 ISKRQEEIENKIEVADALATKLL------QRFGYSVSAMKTSSQHLSEVHALQ--VEIGE 148
+ +R EEIE AL +L+ Q G VSA T QH S++++L+ I E
Sbjct: 66 LFRRLEEIE-------ALHPELISNDSPTQEVGGEVSAAFTPVQHTSQIYSLEDVFSIEE 118
Query: 149 LKGRLTEVISNCDALCKRIAAEGP 172
L+ + + +N + L I AE P
Sbjct: 119 LQSWIIKAQANAEKLAGSIVAERP 142
>sp|Q6ZWR6|SYNE1_MOUSE Nesprin-1 OS=Mus musculus GN=Syne1 PE=1 SV=2
Length = 8799
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 7 TLSSPQSQRPIDDITTVSYKSESVDPILENIKSLKITTPIL--TSPPPTE---SSLTDIL 61
T SS Q +D++ + + E + L+ S IT +L PP E S+L ++
Sbjct: 7163 TGSSEAVQVQVDNLQNLHDELEKQEGGLQKFGS--ITNQLLKECHPPVAETLSSTLQEVN 7220
Query: 62 VRRSSTSS--ASGTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIE-------NKIEVAD 112
+R ++ A + K LL+L+ Y+D+ ++ A I +++E+ NK ++AD
Sbjct: 7221 MRWNNLLEEIAEQLHSSKALLQLWQRYKDYSKQCASAIQRQEEQTSVLLKAATNK-DIAD 7279
Query: 113 ALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEVIS----NCDALC--KR 166
TK +Q + ++T L + E+GE G+ +V + C+ LC +R
Sbjct: 7280 DEVTKWIQDCNDLLKGLETVKDSL----FILRELGEQLGQQVDVSAAAAIQCEQLCFSQR 7335
Query: 167 IAA 169
+ A
Sbjct: 7336 LGA 7338
>sp|Q9K9S8|MURD_BACHD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=murD PE=3 SV=1
Length = 450
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 4 SESTLSSPQSQRPIDDITTVSYKSESVDPILENIKS------LKITTPILTSPPPTESSL 57
+E L+S S+ I IT + K+ + ++E +K + ++ S E++
Sbjct: 100 TEVELASKVSEAEIVAITGSNGKTTTTSLVVEMLKGSAREPKVAGNIGVVASDVAREATA 159
Query: 58 TDILVRRSSTSSASGT--VNPKV--LLELFSMYRDWQEEKAKQISKRQEEIEN 106
D++V S+ GT PKV LL +F + D+ K ++ +++ +EN
Sbjct: 160 DDVIVMEVSSFQLMGTSHFRPKVAILLNIFDAHLDYHGSKENYVAAKKKIVEN 212
>sp|O59729|SLPI_SCHPO Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=slp1 PE=3 SV=1
Length = 659
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 90 QEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHA-LQVEIGE 148
QE K I+KR +E + + D + K+L +G + +Q L E+++ LQ+EI +
Sbjct: 454 QESIYKNINKRLSTLEERKKAFDEIVEKILTNYGKHNAKNMNFTQLLHELNSTLQLEISK 513
Query: 149 L 149
L
Sbjct: 514 L 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.122 0.317
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,058,203
Number of Sequences: 539616
Number of extensions: 2218719
Number of successful extensions: 9886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 9847
Number of HSP's gapped (non-prelim): 133
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)