Query 028075
Match_columns 214
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 09:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yy0_A C-MYC-binding protein; 88.9 0.25 8.7E-06 33.7 2.6 35 135-169 17-51 (53)
2 4djg_A Plectin-related protein 78.6 1.3 4.5E-05 31.1 2.5 26 98-123 26-51 (52)
3 2p22_C Protein SRN2; endosome, 74.7 14 0.00049 30.4 8.2 23 148-170 128-150 (192)
4 4ew8_A Sensor protein DIVL; si 68.4 15 0.0005 27.8 6.4 53 88-140 17-69 (268)
5 3v86_A De novo design helix; c 68.3 3.3 0.00011 25.6 2.2 18 139-156 2-19 (27)
6 3uul_A Utrophin; spectrin repe 66.3 28 0.00095 23.7 10.1 74 72-170 31-104 (118)
7 1hs7_A Syntaxin VAM3; UP-and-D 62.3 4.2 0.00015 30.7 2.3 38 131-168 14-58 (97)
8 1oxz_A ADP-ribosylation factor 58.9 32 0.0011 28.3 7.2 89 84-173 59-167 (186)
9 2dnx_A Syntaxin-12; snare, HAB 56.8 15 0.00051 27.9 4.6 47 119-169 23-69 (130)
10 1o3x_A ADP-ribosylation factor 53.3 58 0.002 25.4 7.6 80 85-165 35-134 (140)
11 3uun_A Dystrophin; triple heli 51.1 53 0.0018 22.1 7.8 72 73-169 32-103 (119)
12 3qfe_A Putative dihydrodipicol 50.9 49 0.0017 28.1 7.3 138 18-167 169-317 (318)
13 2qyw_A Vesicle transport throu 50.0 73 0.0025 23.3 7.3 31 74-104 8-38 (102)
14 2efl_A Formin-binding protein 44.3 1E+02 0.0036 24.3 7.9 64 106-169 91-155 (305)
15 3gp4_A Transcriptional regulat 44.1 42 0.0014 25.4 5.3 32 134-165 88-119 (142)
16 1vf6_A PALS-1, PALS1-associate 43.4 20 0.0007 27.0 3.3 56 108-163 6-67 (83)
17 2nuw_A 2-keto-3-deoxygluconate 41.0 41 0.0014 27.9 5.2 74 19-99 148-224 (288)
18 3gpv_A Transcriptional regulat 40.4 29 0.001 26.4 3.9 21 113-133 63-83 (148)
19 3qne_A Seryl-tRNA synthetase, 38.9 74 0.0025 29.5 7.0 79 75-167 28-108 (485)
20 3na7_A HP0958; flagellar bioge 38.5 1.2E+02 0.004 24.8 7.5 74 93-167 54-127 (256)
21 3r9v_A Invasin IPAD; type III 38.4 83 0.0028 28.0 7.0 76 86-161 95-171 (286)
22 1w3i_A EDA, 2-keto-3-deoxy glu 38.4 93 0.0032 25.8 7.0 79 18-99 148-226 (293)
23 2fup_A Hypothetical protein PA 37.2 1.2E+02 0.0041 22.1 8.3 67 95-165 42-110 (157)
24 2r91_A 2-keto-3-deoxy-(6-phosp 35.9 92 0.0031 25.7 6.5 76 18-99 147-225 (286)
25 4dnd_A Syntaxin-10, SYN10; str 35.6 1.3E+02 0.0046 23.0 7.0 72 79-153 40-128 (130)
26 2d2s_A Exocyst complex compone 35.0 20 0.00067 29.7 2.3 49 115-165 37-87 (235)
27 3pv8_A DNA polymerase I; DNA p 34.9 1.6E+02 0.0056 27.4 8.7 85 112-201 248-342 (592)
28 3nzz_A Cell invasion protein S 34.6 93 0.0032 28.0 6.7 74 85-161 95-171 (308)
29 3gp4_A Transcriptional regulat 33.1 1.3E+02 0.0045 22.6 6.6 60 76-135 79-138 (142)
30 3vkg_A Dynein heavy chain, cyt 31.6 1.8E+02 0.006 33.1 9.5 35 72-106 1890-1924(3245)
31 1q06_A Transcriptional regulat 30.9 59 0.002 24.2 4.2 29 133-161 85-113 (135)
32 3lss_A Seryl-tRNA synthetase; 30.8 1.2E+02 0.0043 28.0 7.1 32 136-167 109-141 (484)
33 1xi4_J LCA, clathrin light cha 30.7 1.1E+02 0.0039 21.8 5.5 48 86-133 11-60 (70)
34 1t3u_A Conserved hypothetical 30.0 45 0.0015 23.9 3.3 72 90-161 28-99 (104)
35 1ses_A Seryl-tRNA synthetase; 28.8 1.1E+02 0.0039 27.1 6.3 81 79-179 27-109 (421)
36 2q7s_A N-formylglutamate amido 28.7 55 0.0019 28.0 4.1 91 73-164 131-286 (290)
37 2wkj_A N-acetylneuraminate lya 28.4 1.1E+02 0.0036 25.7 5.7 77 18-98 166-243 (303)
38 2au5_A Conserved domain protei 27.6 30 0.001 28.0 2.1 64 72-168 41-104 (139)
39 3aev_A Translation initiation 27.0 1.9E+02 0.0065 24.5 7.1 60 98-159 108-169 (275)
40 3ghg_A Fibrinogen alpha chain; 26.5 2.1E+02 0.0073 27.7 8.0 36 135-170 107-143 (562)
41 2ym9_A Cell invasion protein S 26.4 1.8E+02 0.006 26.5 7.1 74 85-161 133-209 (346)
42 2r8w_A AGR_C_1641P; APC7498, d 25.8 1E+02 0.0035 26.4 5.3 31 68-98 240-270 (332)
43 3f31_A Spectrin alpha chain, b 25.7 2E+02 0.0068 21.1 7.6 69 75-171 76-144 (149)
44 2j0o_A Invasin IPAD; type III 25.7 1.9E+02 0.0064 26.2 7.1 73 86-161 117-193 (318)
45 1deq_A Fibrinogen (alpha chain 25.7 1.7E+02 0.0057 27.2 7.0 32 135-166 132-166 (390)
46 3bvo_A CO-chaperone protein HS 25.4 2.2E+02 0.0076 23.0 7.0 40 72-111 127-167 (207)
47 3l39_A Putative PHOU-like phos 25.3 1.6E+02 0.0054 23.5 6.1 75 93-182 57-132 (227)
48 2yc2_C IFT27, small RAB-relate 25.3 20 0.00069 25.6 0.7 42 104-147 138-187 (208)
49 2p22_C Protein SRN2; endosome, 25.2 78 0.0027 25.9 4.3 117 47-169 15-135 (192)
50 1m1j_A Fibrinogen alpha subuni 24.9 84 0.0029 30.0 4.9 66 84-166 90-168 (491)
51 2p7n_A Pathogenicity island 1 24.9 2E+02 0.0069 26.8 7.4 83 78-160 170-252 (407)
52 3hh0_A Transcriptional regulat 24.5 1.6E+02 0.0056 22.2 5.7 18 115-132 53-70 (146)
53 2dq0_A Seryl-tRNA synthetase; 24.2 1.4E+02 0.0046 27.0 6.0 78 76-167 27-106 (455)
54 2pcq_A Putative dihydrodipicol 23.8 1.4E+02 0.0048 24.6 5.6 79 18-99 146-224 (283)
55 1wle_A Seryl-tRNA synthetase; 23.7 2.8E+02 0.0096 25.5 8.1 92 76-179 66-161 (501)
56 2dq3_A Seryl-tRNA synthetase; 23.7 2.5E+02 0.0084 24.9 7.5 78 76-167 26-105 (425)
57 1wrd_A TOM1, target of MYB pro 23.1 2.2E+02 0.0074 20.9 6.0 50 117-166 43-95 (103)
58 1f6k_A N-acetylneuraminate lya 22.9 82 0.0028 26.1 4.0 78 18-98 158-235 (293)
59 2efk_A CDC42-interacting prote 22.1 2.9E+02 0.01 21.7 7.4 82 83-168 65-147 (301)
60 3d0c_A Dihydrodipicolinate syn 22.0 3.5E+02 0.012 22.7 8.0 75 18-97 161-241 (314)
61 3s5o_A 4-hydroxy-2-oxoglutarat 22.0 1.6E+02 0.0054 24.7 5.6 33 67-99 218-250 (307)
62 3n06_A Prolactin, PRL; PH depe 21.6 1.3E+02 0.0045 23.9 4.9 62 112-173 68-130 (186)
63 2bid_A Protein (BID); programm 21.1 2E+02 0.007 24.5 6.1 84 88-180 79-174 (197)
64 3bbn_D Ribosomal protein S4; s 20.4 38 0.0013 28.0 1.5 66 15-84 131-198 (201)
65 1naf_A ADP-ribosylation factor 20.4 3.3E+02 0.011 21.7 9.1 87 84-171 43-149 (158)
66 3tso_C RAB11 family-interactin 20.0 1E+02 0.0034 22.8 3.5 47 136-182 20-66 (75)
No 1
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.89 E-value=0.25 Score=33.71 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=31.6
Q ss_pred hhccccchhhhHhhhhhHHHHHHhhhHHHHHHHHh
Q 028075 135 HLSEVHALQVEIGELKGRLTEVISNCDALCKRIAA 169 (214)
Q Consensus 135 hL~~V~~LqvevgElKgrLteVisncdaLCKRI~~ 169 (214)
--++|-.|+.|+.|||.+..+....++-||+|+++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34688999999999999999999999999999874
No 2
>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}
Probab=78.63 E-value=1.3 Score=31.08 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=22.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhc
Q 028075 98 SKRQEEIENKIEVADALATKLLQRFG 123 (214)
Q Consensus 98 sk~QeeienkIE~adalA~KLlQR~n 123 (214)
.+..+|++.-|-.|||||++|-||=|
T Consensus 26 GrnkddveeaismVealavqltqrE~ 51 (52)
T 4djg_A 26 GRNKDDVEEAIAMVEALAVQLTQREG 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778999999999999999999854
No 3
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=74.74 E-value=14 Score=30.37 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=15.9
Q ss_pred hhhhHHHHHHhhhHHHHHHHHhc
Q 028075 148 ELKGRLTEVISNCDALCKRIAAE 170 (214)
Q Consensus 148 ElKgrLteVisncdaLCKRI~~e 170 (214)
-|+.+|..-+++-|+-|..|+..
T Consensus 128 ~L~~~L~~a~~e~eeeS~~l~~~ 150 (192)
T 2p22_C 128 ALKKKLEQNTKKLDEESSQLETT 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777764
No 4
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=68.39 E-value=15 Score=27.76 Aligned_cols=53 Identities=6% Similarity=0.072 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccc
Q 028075 88 DWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVH 140 (214)
Q Consensus 88 eWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~ 140 (214)
.+.++-.+++.+++++++...+..+.++.-+-..++-.+++++..++.|..-.
T Consensus 17 ~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~ 69 (268)
T 4ew8_A 17 RGSHMLQSALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERAD 69 (268)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence 34455566677777777777777777777777778888888888887776533
No 5
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=68.32 E-value=3.3 Score=25.61 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=13.8
Q ss_pred ccchhhhHhhhhhHHHHH
Q 028075 139 VHALQVEIGELKGRLTEV 156 (214)
Q Consensus 139 V~~LqvevgElKgrLteV 156 (214)
|+.|+-|||||||.....
T Consensus 2 vyqlkdevgelkgevral 19 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRAL 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHH
Confidence 567888999999976543
No 6
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=66.31 E-value=28 Score=23.67 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=44.0
Q ss_pred CCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhh
Q 028075 72 GTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKG 151 (214)
Q Consensus 72 ~~~np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKg 151 (214)
..-|+..+-+++.-+...+.+. ...+. +|+.+-..|-+|++.-++ -..+...++.
T Consensus 31 ~~~d~~~v~~~l~~h~~l~~ei----~~~~~----~v~~v~~~g~~L~~~~~~-----------------~~~~~~~i~~ 85 (118)
T 3uul_A 31 ISDDVEDVKEQFATHETFMMEL----SAHQS----SVGSVLQAGNQLMTQGTL-----------------SDEEEFEIQE 85 (118)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHTTCS-----------------CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHhCCC-----------------ChhHHHHHHH
Confidence 3457888777777776666543 33333 344445555566553222 1234556777
Q ss_pred HHHHHHhhhHHHHHHHHhc
Q 028075 152 RLTEVISNCDALCKRIAAE 170 (214)
Q Consensus 152 rLteVisncdaLCKRI~~e 170 (214)
+|..+-..++.||.+....
T Consensus 86 ~l~~l~~rw~~L~~~~~~R 104 (118)
T 3uul_A 86 QMTLLNARWEALRVESMER 104 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777888888776543
No 7
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=62.31 E-value=4.2 Score=30.69 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=28.5
Q ss_pred hhhhhhccccchhhhHh------hhhhHHH-HHHhhhHHHHHHHH
Q 028075 131 TSSQHLSEVHALQVEIG------ELKGRLT-EVISNCDALCKRIA 168 (214)
Q Consensus 131 tts~hL~~V~~Lqvevg------ElKgrLt-eVisncdaLCKRI~ 168 (214)
|.+.+++....+..-|| +|...|. +++++|+.|.|+|.
T Consensus 14 t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 14 TFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444444454 7899999 99999999999999
No 8
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=58.94 E-value=32 Score=28.28 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=63.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhH---HHHHHHHH-------------HHHHHHHhccchhhhhhhhhhhcc-c---cchh
Q 028075 84 SMYRDWQEEKAKQISKRQEEIEN---KIEVADAL-------------ATKLLQRFGYSVSAMKTSSQHLSE-V---HALQ 143 (214)
Q Consensus 84 S~YreWQe~~a~~isk~Qeeien---kIE~adal-------------A~KLlQR~n~S~S~Mktts~hL~~-V---~~Lq 143 (214)
+|+.+ -+.+.++++|+..||+. ++++-... -.-|+|.+.-+.-.|+..-++|-+ + ..+=
T Consensus 59 ~m~~~-d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L 137 (186)
T 1oxz_A 59 EMVQE-DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEAL 137 (186)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred HHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 45554 35678999999988876 66655442 236778888888889998888873 3 2356
Q ss_pred hhHhhhhhHHHHHHhhhHHHHHHHHhcCCc
Q 028075 144 VEIGELKGRLTEVISNCDALCKRIAAEGPD 173 (214)
Q Consensus 144 vevgElKgrLteVisncdaLCKRI~~eGPe 173 (214)
.|+.++-..|+.||..|+.+.+.=...|..
T Consensus 138 ~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~ 167 (186)
T 1oxz_A 138 AEILQANDNLTQVINLYKQLVRGEEVNGDA 167 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHCC-----
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCccc
Confidence 788999999999999999998765555533
No 9
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.85 E-value=15 Score=27.85 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=33.3
Q ss_pred HHHhccchhhhhhhhhhhccccchhhhHhhhhhHHHHHHhhhHHHHHHHHh
Q 028075 119 LQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEVISNCDALCKRIAA 169 (214)
Q Consensus 119 lQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLteVisncdaLCKRI~~ 169 (214)
++++|-.++.|+---..|.-- -+.-+|..+|..+...|..|||.+..
T Consensus 23 I~~In~~vs~l~r~v~~LGT~----kDt~~LR~kl~~~~~~t~~l~k~ts~ 69 (130)
T 2dnx_A 23 IQRISQATAQIKNLMSQLGTK----QDSSKLQENLQQLQHSTNQLAKETNE 69 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS----SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777665555542 25677888888888888888887764
No 10
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=53.30 E-value=58 Score=25.45 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=57.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHh---HHHHHHHHH-H------------HHHHHHhccchhhhhhhhhhhcc-c---cchhh
Q 028075 85 MYRDWQEEKAKQISKRQEEIE---NKIEVADAL-A------------TKLLQRFGYSVSAMKTSSQHLSE-V---HALQV 144 (214)
Q Consensus 85 ~YreWQe~~a~~isk~Qeeie---nkIE~adal-A------------~KLlQR~n~S~S~Mktts~hL~~-V---~~Lqv 144 (214)
|+.+ -+.+..+++|+..||+ +++++-... . .-|++.+.-+.-.|+..-++|-+ + ..+=.
T Consensus 35 m~~~-d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~ 113 (140)
T 1o3x_A 35 MVQE-DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALA 113 (140)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence 4442 3566888888887765 455554432 1 36778888888889998888873 3 23567
Q ss_pred hHhhhhhHHHHHHhhhHHHHH
Q 028075 145 EIGELKGRLTEVISNCDALCK 165 (214)
Q Consensus 145 evgElKgrLteVisncdaLCK 165 (214)
|+.++-..|+.||..|+++++
T Consensus 114 elL~~ND~ln~vl~kY~~~~~ 134 (140)
T 1o3x_A 114 EILQANDNLTQVINLYKQLVR 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhc
Confidence 888999999999999998865
No 11
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=51.14 E-value=53 Score=22.09 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhH
Q 028075 73 TVNPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGR 152 (214)
Q Consensus 73 ~~np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgr 152 (214)
.-|+..+-.++.-+...+.+. ..++. +|+.+...|-+|++.-+++ ..+...++.+
T Consensus 32 ~~d~~~v~~~l~~h~~l~~ei----~~~~~----~v~~~~~~g~~L~~~~~~~-----------------~~~~~~i~~~ 86 (119)
T 3uun_A 32 SNDVEVVKDQFHTHEGYMMDL----TAHQG----RVGNILQLGSKLIGTGKLS-----------------EDEETEVQEQ 86 (119)
T ss_dssp CSSHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHHTCSC-----------------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH----HHhHH----HHHHHHHHHHHHHHcCCCC-----------------HHHHHHHHHH
Confidence 346666666666665555433 23333 3444444555555432221 2234456777
Q ss_pred HHHHHhhhHHHHHHHHh
Q 028075 153 LTEVISNCDALCKRIAA 169 (214)
Q Consensus 153 LteVisncdaLCKRI~~ 169 (214)
|..+-..++.||.++..
T Consensus 87 l~~l~~rw~~L~~~~~~ 103 (119)
T 3uun_A 87 MNLLNSRWECLRVASME 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776654
No 12
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=50.89 E-value=49 Score=28.05 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=63.9
Q ss_pred cceeeeecCccCcchHHHhhhcccc-cCccccCCCCCCCccccee-eccCCCCCCCCCCChHHHHHHHHHhHHHHHHHHH
Q 028075 18 DDITTVSYKSESVDPILENIKSLKI-TTPILTSPPPTESSLTDIL-VRRSSTSSASGTVNPKVLLELFSMYRDWQEEKAK 95 (214)
Q Consensus 18 DeITTVse~~e~~DP~LErLkSLkI-a~PiL~spp~~EssLtDIL-vrk~ssSs~S~~~np~v~~ELfS~YreWQe~~a~ 95 (214)
+.|.-|++.+..++-+.+-++.+.= -=.++.+.. .-+-+.| +.-.-.-+..+++-|..+.+|+..|++=.-+.|.
T Consensus 169 pnIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d---~~~l~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~ 245 (318)
T 3qfe_A 169 PNVVGVKLTCASVGKITRLAATLPPAAFSVFGGQS---DFLIGGLSVGSAGCIAAFANVFPKTVSKIYELYKAGKVDQAM 245 (318)
T ss_dssp TTEEEEEESSCCHHHHHHHHHHSCGGGCEEEESCG---GGHHHHHHTTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHH
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCCEEEEEecH---HHHHHHHHCCCCEEEecHHHhhHHHHHHHHHHHHCCCHHHHH
Confidence 3466777766554433332222210 001444433 1122222 2222244566789999999988777654445555
Q ss_pred HHHHHHHHHhHHHH-----HHHHHHHHHHHHhcc-ch---hhhhhhhhhhccccchhhhHhhhhhHHHHHHhhhHHHHHH
Q 028075 96 QISKRQEEIENKIE-----VADALATKLLQRFGY-SV---SAMKTSSQHLSEVHALQVEIGELKGRLTEVISNCDALCKR 166 (214)
Q Consensus 96 ~isk~QeeienkIE-----~adalA~KLlQR~n~-S~---S~Mktts~hL~~V~~LqvevgElKgrLteVisncdaLCKR 166 (214)
++..+-..+..-++ +=.|++..+++..|+ .+ ..+|-=-..|+ .+.+.+|.+++.++..+.++
T Consensus 246 ~l~~~l~~~~~~~~~~~~~~K~al~~~~~~~~G~~~~~~~g~~R~Pl~~l~---------~~~~~~l~~~l~~~~~~e~~ 316 (318)
T 3qfe_A 246 ELHRKAALAESPCKSGIATTKYAAAIFSAKAAGIEDAEEKLRPRKPYDPPS---------EAAKQEVRKVMAEVAAIEAG 316 (318)
T ss_dssp HHHHHHHHHTCCC--CHHHHHHHHHHTHHHHTTCTTHHHHTSCSTTSCCCC---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhhHHHhCCCcCCCCCCCCCCCCCCCC---------HHHHHHHHHHHHHHHHHHhh
Confidence 55443322211111 111222223344555 21 12222111111 35677778888887777665
Q ss_pred H
Q 028075 167 I 167 (214)
Q Consensus 167 I 167 (214)
+
T Consensus 317 l 317 (318)
T 3qfe_A 317 L 317 (318)
T ss_dssp H
T ss_pred c
Confidence 4
No 13
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=49.97 E-value=73 Score=23.31 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 028075 74 VNPKVLLELFSMYRDWQEEKAKQISKRQEEI 104 (214)
Q Consensus 74 ~np~v~~ELfS~YreWQe~~a~~isk~Qeei 104 (214)
-||-.+-|||.-|.+=-..-..+|.++-..|
T Consensus 8 ~~~~~mSelFe~YE~df~~l~~~i~~kl~~i 38 (102)
T 2qyw_A 8 AASAASSEHFEKLHEIFRGLLEDLQGVPERL 38 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788999999754444444444443333
No 14
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=44.34 E-value=1e+02 Score=24.25 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhh-hhhhhhccccchhhhHhhhhhHHHHHHhhhHHHHHHHHh
Q 028075 106 NKIEVADALATKLLQRFGYSVSAMK-TSSQHLSEVHALQVEIGELKGRLTEVISNCDALCKRIAA 169 (214)
Q Consensus 106 nkIE~adalA~KLlQR~n~S~S~Mk-tts~hL~~V~~LqvevgElKgrLteVisncdaLCKRI~~ 169 (214)
....+|+.|.-.+.+.|.--..-++ .--.+.+++..++-++.+.-..|...-.+|+..|+..+.
T Consensus 91 ~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~ 155 (305)
T 2efl_A 91 QHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADR 155 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543333344 223455667788888888888888889999999987763
No 15
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.14 E-value=42 Score=25.44 Aligned_cols=32 Identities=22% Similarity=0.087 Sum_probs=18.3
Q ss_pred hhhccccchhhhHhhhhhHHHHHHhhhHHHHH
Q 028075 134 QHLSEVHALQVEIGELKGRLTEVISNCDALCK 165 (214)
Q Consensus 134 ~hL~~V~~LqvevgElKgrLteVisncdaLCK 165 (214)
.|+.++..-.-++.++...|...|..|+....
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555566666777777766543
No 16
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=43.41 E-value=20 Score=26.99 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhccc----hhhhhhhhhh--hccccchhhhHhhhhhHHHHHHhhhHHH
Q 028075 108 IEVADALATKLLQRFGYS----VSAMKTSSQH--LSEVHALQVEIGELKGRLTEVISNCDAL 163 (214)
Q Consensus 108 IE~adalA~KLlQR~n~S----~S~Mktts~h--L~~V~~LqvevgElKgrLteVisncdaL 163 (214)
..|+|.|-+||-+|=-++ ++..|.+-+| +.++-.||--|++||+.++...+.|.+.
T Consensus 6 Lq~leRLQ~KL~erGd~s~~ekLs~lk~~LqSPLF~qILtlQqSikqLk~Qvn~~p~~~~~~ 67 (83)
T 1vf6_A 6 LQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLNHILESGKET 67 (83)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHccccchHhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCcccccc
Confidence 357888889998886554 6777887665 7888899999999999999999888765
No 17
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=41.04 E-value=41 Score=27.91 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=37.7
Q ss_pred ceeeeecCccCcchHHHhhhcccccCc---cccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHHHhHHHHHHHHH
Q 028075 19 DITTVSYKSESVDPILENIKSLKITTP---ILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFSMYRDWQEEKAK 95 (214)
Q Consensus 19 eITTVse~~e~~DP~LErLkSLkIa~P---iL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS~YreWQe~~a~ 95 (214)
.|.-|++.+.+++-+.+-++ .++ ++.+.. .-+-+.|..-.-.-+..+++-|....+|+..|++-.-+.|.
T Consensus 148 nIvgiKdssgd~~~~~~~~~----~~~~f~v~~G~d---~~~~~~l~~~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~ 220 (288)
T 2nuw_A 148 PVKGIKDTNQDLAHSLEYKL----NLPGVKVYNGSN---TLIYYSLLSLDGVVASFTNFIPEVIVKQRDLIKQGKLDDAL 220 (288)
T ss_dssp TEEEEEECCSCHHHHHHHHH----HSTTCEEEECCG---GGHHHHHTTSSEEECGGGGTCHHHHHHHHHHHHTTCHHHHH
T ss_pred EEEEEEeCCCCHHHHHHHHh----cCCCeEEEECcH---HHHHHHHHHhCEEEecHHHhCHHHHHHHHHHHHCCCHHHHH
Confidence 57777777765544333322 111 344432 12222222222233455688999999977777643334555
Q ss_pred HHHH
Q 028075 96 QISK 99 (214)
Q Consensus 96 ~isk 99 (214)
++..
T Consensus 221 ~l~~ 224 (288)
T 2nuw_A 221 RLQE 224 (288)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 18
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.36 E-value=29 Score=26.35 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=11.7
Q ss_pred HHHHHHHHHhccchhhhhhhh
Q 028075 113 ALATKLLQRFGYSVSAMKTSS 133 (214)
Q Consensus 113 alA~KLlQR~n~S~S~Mktts 133 (214)
...++.|+.+|+|+.-+|.--
T Consensus 63 l~~I~~lr~~G~sL~eIk~~l 83 (148)
T 3gpv_A 63 LEMILCLKNTGMPIQKIKQFI 83 (148)
T ss_dssp HHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 344555666666666555443
No 19
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.87 E-value=74 Score=29.52 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhH
Q 028075 75 NPKVLLELFSMYRDWQEEKA--KQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGR 152 (214)
Q Consensus 75 np~v~~ELfS~YreWQe~~a--~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgr 152 (214)
++..+-++..++.+|++... +++..++.++..+|-. +.+=+ .....-+.++..|+-+|.+|+..
T Consensus 28 ~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~--------~k~~~------~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 28 SVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK--------RFKAK------EDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHTT------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhcCc------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788888888887543 3444444444444421 11111 11234455666677777777777
Q ss_pred HHHHHhhhHHHHHHH
Q 028075 153 LTEVISNCDALCKRI 167 (214)
Q Consensus 153 LteVisncdaLCKRI 167 (214)
+.++-...+.++-+|
T Consensus 94 ~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 94 EAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777777665
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.46 E-value=1.2e+02 Score=24.83 Aligned_cols=74 Identities=4% Similarity=0.066 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHHHHHHhhhHHHHHHH
Q 028075 93 KAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEVISNCDALCKRI 167 (214)
Q Consensus 93 ~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLteVisncdaLCKRI 167 (214)
....+.+.+..+++.|+-+.+-.-+.=++++ +++.-|--.+-..++..++-++..+...+.+++...+++=+.+
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~-~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMS-EIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677778888887777777774 5655555555555555666666666666666666665554444
No 21
>3r9v_A Invasin IPAD; type III secretion system, TIP protein, deoxycholate, cell I; HET: DXC; 1.90A {Shigella flexneri} SCOP: a.250.1.1 PDB: 2jaa_A 2j0n_A
Probab=38.42 E-value=83 Score=28.00 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhc-cccchhhhHhhhhhHHHHHHhhhH
Q 028075 86 YRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLS-EVHALQVEIGELKGRLTEVISNCD 161 (214)
Q Consensus 86 YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~-~V~~LqvevgElKgrLteVisncd 161 (214)
|+|--...++-|+...++-----+-+=.-+.+..|-||--++.|..-..+=. +=..++.....||..|++++.+|.
T Consensus 95 yaElwa~Is~~I~~IksdYld~Ya~lvk~yTdyyQd~N~~lsk~s~~I~agg~DGN~IkFd~~~lk~~l~~f~~kY~ 171 (286)
T 3r9v_A 95 HRELWAKIANSINDINEQYLKVYEHAVSSYTQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVNSLKKALEELKEKYK 171 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEESSSSSEEEECHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCeeeecHHHHHHHHHHHHHHhc
Confidence 4454455677777777776666666667789999999997776653333222 334689999999999999999886
No 22
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=38.40 E-value=93 Score=25.84 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=38.4
Q ss_pred cceeeeecCccCcchHHHhhhcccccCccccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHH
Q 028075 18 DDITTVSYKSESVDPILENIKSLKITTPILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFSMYRDWQEEKAKQI 97 (214)
Q Consensus 18 DeITTVse~~e~~DP~LErLkSLkIa~PiL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS~YreWQe~~a~~i 97 (214)
+.|.-|++.+..++-+.+-++ ..=---++.+.. +--+.-+.+.-.-.-+..+++-|+.+.+|+..|++-.-+.|.++
T Consensus 148 pnIvgiKds~gd~~~~~~~~~-~~~~f~v~~G~d--~~~~~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l 224 (293)
T 1w3i_A 148 GCFTGVKDTIENIIHTLDYKR-LNPNMLVYSGSD--MLIATVASTGLDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKL 224 (293)
T ss_dssp CCEEEEEECCSCHHHHHHHHH-HCTTSEEEECCS--TTHHHHHHTTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCEEEEEeCCCCHHHHHHHHh-cCCCEEEEEccH--HHHHHHHHcCCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHH
Confidence 456777777655443333322 110001344433 11222222333334455678899999987766654333445544
Q ss_pred HH
Q 028075 98 SK 99 (214)
Q Consensus 98 sk 99 (214)
..
T Consensus 225 ~~ 226 (293)
T 1w3i_A 225 QF 226 (293)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 23
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=37.17 E-value=1.2e+02 Score=22.12 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccch--hhhhhhhhhhccccchhhhHhhhhhHHHHHHhhhHHHHH
Q 028075 95 KQISKRQEEIENKIEVADALATKLLQRFGYSV--SAMKTSSQHLSEVHALQVEIGELKGRLTEVISNCDALCK 165 (214)
Q Consensus 95 ~~isk~QeeienkIE~adalA~KLlQR~n~S~--S~Mktts~hL~~V~~LqvevgElKgrLteVisncdaLCK 165 (214)
..|.+..+++=.+|+..|.-=.+++..+|+.. ..|..-..+ ...+-++.++-..|..++..|..+-.
T Consensus 42 ~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~----~~~~~~l~~~~~~l~~l~~~~~~~N~ 110 (157)
T 2fup_A 42 QQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE----RADGAELLARGDELGELLERCQQANL 110 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT----CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc----cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666677889998764 334332222 45667888888899999999877654
No 24
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=35.94 E-value=92 Score=25.72 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=38.2
Q ss_pred cceeeeecCccCcchHHHhhhcccccCc---cccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHHHhHHHHHHHH
Q 028075 18 DDITTVSYKSESVDPILENIKSLKITTP---ILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFSMYRDWQEEKA 94 (214)
Q Consensus 18 DeITTVse~~e~~DP~LErLkSLkIa~P---iL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS~YreWQe~~a 94 (214)
+.|.-|++.+.+++=+.+-++ .++ ++.+.. +--+.-+.+.-.-.-+..+++-|+...+|+..|++-.-+.|
T Consensus 147 pnivgiKds~gd~~~~~~~~~----~~~~f~v~~G~d--~~~~~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A 220 (286)
T 2r91_A 147 GCIRGVKDTNESLAHTLAYKR----YLPQARVYNGSD--SLVFASFAVRLDGVVASSANYLPELLAGIRDAVAAGDIERA 220 (286)
T ss_dssp SCEEEEEECCSCHHHHHHHHH----HCTTSEEEECCG--GGHHHHHHTTCSEECCGGGTTCHHHHHHHHHHHHTTCHHHH
T ss_pred CCEEEEEeCCCCHHHHHHHHh----cCCCEEEEEccH--HHHHHHHHcCCCEEEecHHHhCHHHHHHHHHHHHCCCHHHH
Confidence 456777777655443333222 111 344332 11122222333334455678999999987776664333445
Q ss_pred HHHHH
Q 028075 95 KQISK 99 (214)
Q Consensus 95 ~~isk 99 (214)
.++..
T Consensus 221 ~~l~~ 225 (286)
T 2r91_A 221 RSLQF 225 (286)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 25
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=35.56 E-value=1.3e+02 Score=23.04 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=41.9
Q ss_pred HHHHHHHhHHHHHHH--H-----HHHHHHHHHHhHHHHHHHHH------HH----HHHHHhccchhhhhhhhhhhccccc
Q 028075 79 LLELFSMYRDWQEEK--A-----KQISKRQEEIENKIEVADAL------AT----KLLQRFGYSVSAMKTSSQHLSEVHA 141 (214)
Q Consensus 79 ~~ELfS~YreWQe~~--a-----~~isk~QeeienkIE~adal------A~----KLlQR~n~S~S~Mktts~hL~~V~~ 141 (214)
+--+=++|+.|++.. + .++.....||.+-++.++.= |+ +=-.|||.+.. ..+.|=+-|..
T Consensus 40 l~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~---Ei~~Rr~fV~~ 116 (130)
T 4dnd_A 40 VNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAG---DLQERKVFVER 116 (130)
T ss_dssp HHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHH---HHHHHHHHHHH
Confidence 334678899997432 1 24555555666655554421 12 22346776654 24556677777
Q ss_pred hhhhHhhhhhHH
Q 028075 142 LQVEIGELKGRL 153 (214)
Q Consensus 142 LqvevgElKgrL 153 (214)
++-+|.+||..|
T Consensus 117 ~r~~I~~mk~~l 128 (130)
T 4dnd_A 117 MREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888765
No 26
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.02 E-value=20 Score=29.70 Aligned_cols=49 Identities=8% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHhccchhhhhhhh--hhhccccchhhhHhhhhhHHHHHHhhhHHHHH
Q 028075 115 ATKLLQRFGYSVSAMKTSS--QHLSEVHALQVEIGELKGRLTEVISNCDALCK 165 (214)
Q Consensus 115 A~KLlQR~n~S~S~Mktts--~hL~~V~~LqvevgElKgrLteVisncdaLCK 165 (214)
|+.|+++.+.-+..++..+ -+...+..++.-|.|.|.+|+++| .++|+.
T Consensus 37 Av~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L--~~~l~~ 87 (235)
T 2d2s_A 37 AVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKL--SQSILS 87 (235)
T ss_dssp HHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHH--HHHHHT
T ss_pred HHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 5556666665555555321 222334557777889999999988 334433
No 27
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=34.93 E-value=1.6e+02 Score=27.41 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhccchhhh-----hhhhhhhcc---ccchhhhHhhhhhHHHHHHhhh-HHHHHHHHh-cCCcccccccCc
Q 028075 112 DALATKLLQRFGYSVSAM-----KTSSQHLSE---VHALQVEIGELKGRLTEVISNC-DALCKRIAA-EGPDSLKASIKP 181 (214)
Q Consensus 112 dalA~KLlQR~n~S~S~M-----ktts~hL~~---V~~LqvevgElKgrLteVisnc-daLCKRI~~-eGPesLr~sv~p 181 (214)
..|+.-|+.++|..+.-. .|.+..|.. -|++=-.|.|.++ |....+.| |+|-+-|.. .| .+++++.+
T Consensus 248 kql~~~Lf~~lgl~~~kktktg~st~~~vL~~l~~~~p~~~~ile~R~-l~kl~sty~~~l~~~v~~~~g--Rih~~~~q 324 (592)
T 3pv8_A 248 KQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATK--KVHTIFNQ 324 (592)
T ss_dssp HHHHHHHHTTSCCCCCCEETTEECCCHHHHHHTTTTCTHHHHHHHHHH-HHHHHHHHTHHHHHHSBTTTT--EECCEEES
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHHHHHHHhhccCCC--EECceeee
Confidence 345555667777654210 122334444 4787777777775 66777776 998877643 23 67888887
Q ss_pred cccccCCCcccccCCccccc
Q 028075 182 LAVTTTRSEVSCSSSSLQKD 201 (214)
Q Consensus 182 fs~a~~~~~~~~~~~~~~~~ 201 (214)
..++| .+.+++...+|..
T Consensus 325 ~~t~T--GRlss~~PNlQni 342 (592)
T 3pv8_A 325 ALTQT--GRLSSTEPNLQNI 342 (592)
T ss_dssp SCCSS--SCCEEESSCCSSC
T ss_pred CCcee--eCcccccCCcccc
Confidence 76553 3555555556654
No 28
>3nzz_A Cell invasion protein SIPD; needle TIP protein, PRGI, SIPB, SIPC; 1.65A {Salmonella enterica} PDB: 3o02_A* 3o00_A 3o01_A* 2ym0_A
Probab=34.56 E-value=93 Score=28.00 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=57.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhc---cccchhhhHhhhhhHHHHHHhhhH
Q 028075 85 MYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLS---EVHALQVEIGELKGRLTEVISNCD 161 (214)
Q Consensus 85 ~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~---~V~~LqvevgElKgrLteVisncd 161 (214)
-|+|.-+..++-|+..-++--.-.+-+=.-+++-+|-||--++.|. .+++ +=..++..+..||..|.+++.+|.
T Consensus 95 s~aElw~~I~~~I~~Ik~dYldvYa~IVk~YTdyyQdfN~aLSklS---~~IsaGkDGN~IKFd~~sfkkaL~~li~KY~ 171 (308)
T 3nzz_A 95 SDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMG---GWLLPGKDGNTVKLDVTSLKNDLNSLVNKYN 171 (308)
T ss_dssp ---HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTGG---GGEEECSSTTEEEECHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhcCCCCCeeeecHHHHHHHHHHHHHhcc
Confidence 6888778888888888777666666667778999999999888884 4554 333588899999999999999884
No 29
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.12 E-value=1.3e+02 Score=22.63 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhh
Q 028075 76 PKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQH 135 (214)
Q Consensus 76 p~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~h 135 (214)
+....+++.-.++--++..+++.+..+.|+++|+..+..-.+.-+.+|+.-+.-+.-++|
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERSNEGHH 138 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccCCCcc
Confidence 334455555555555555556666667778888877776666666666644444444444
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.58 E-value=1.8e+02 Score=33.12 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=27.4
Q ss_pred CCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 028075 72 GTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIEN 106 (214)
Q Consensus 72 ~~~np~v~~ELfS~YreWQe~~a~~isk~Qeeien 106 (214)
.-+-|+--+||.+.|+.=-.+|-+++..+++-+++
T Consensus 1890 ~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~ 1924 (3245)
T 3vkg_A 1890 NYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNI 1924 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999998887777777776665554
No 31
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=30.94 E-value=59 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=15.2
Q ss_pred hhhhccccchhhhHhhhhhHHHHHHhhhH
Q 028075 133 SQHLSEVHALQVEIGELKGRLTEVISNCD 161 (214)
Q Consensus 133 s~hL~~V~~LqvevgElKgrLteVisncd 161 (214)
..|+.++..-..++.+++..|..++..|.
T Consensus 85 ~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (135)
T 1q06_A 85 LEKVAEIERHIEELQSMRDQLLALANACP 113 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444455555556666665553
No 32
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=30.79 E-value=1.2e+02 Score=27.96 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=23.1
Q ss_pred hcc-ccchhhhHhhhhhHHHHHHhhhHHHHHHH
Q 028075 136 LSE-VHALQVEIGELKGRLTEVISNCDALCKRI 167 (214)
Q Consensus 136 L~~-V~~LqvevgElKgrLteVisncdaLCKRI 167 (214)
+.+ +..|.-+|.+++..+.++-..-+.++-+|
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455 66777777777777777777777776665
No 33
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=30.68 E-value=1.1e+02 Score=21.77 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--ccchhhhhhhh
Q 028075 86 YRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRF--GYSVSAMKTSS 133 (214)
Q Consensus 86 YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~--n~S~S~Mktts 133 (214)
-|+|.++...+|.++-+.=+-+-+-.-.-|.|=|.-| ||.-..=|+-+
T Consensus 11 Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~ 60 (70)
T 1xi4_J 11 IRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKA 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998888877777777788888777 44443334333
No 34
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=29.99 E-value=45 Score=23.86 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHHHHHHhhhH
Q 028075 90 QEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEVISNCD 161 (214)
Q Consensus 90 Qe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLteVisncd 161 (214)
.+.-|+.|.++=.+|..+.-..+.--+-+|--+|..--..+.-..+-.....++-.|.+|..+|..++.+..
T Consensus 28 l~~aA~~vd~~~~~i~~~~~~~~~~r~~vmaALnladel~~~~~~~~~~~~~~~~~i~~L~~~le~aL~~~~ 99 (104)
T 1t3u_A 28 LESAARYLDGKMREIRSSGKVIGADRVAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALANPA 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344455555555555544322221112233334444334444334434556666777777777777766544
No 35
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.78 E-value=1.1e+02 Score=27.12 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=42.2
Q ss_pred HHHHHHHhHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHHHHH
Q 028075 79 LLELFSMYRDWQEEKA--KQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEV 156 (214)
Q Consensus 79 ~~ELfS~YreWQe~~a--~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLteV 156 (214)
+-++..+|.+|.+... +++..++.++...|-. +.+ ....+-+.++..|.-+|.+++..+.++
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~----~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK----APP------------EEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcc------------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888876543 3344444444443321 000 011222345555666677777776666
Q ss_pred HhhhHHHHHHHHhcCCccccccc
Q 028075 157 ISNCDALCKRIAAEGPDSLKASI 179 (214)
Q Consensus 157 isncdaLCKRI~~eGPesLr~sv 179 (214)
-...+.+.-+| |--+-.+|
T Consensus 91 ~~~~~~~~~~i----pN~~~~~v 109 (421)
T 1ses_A 91 EARLEALLLQV----PLPPWPGA 109 (421)
T ss_dssp HHHHHHHHTTC----CCCCCTTS
T ss_pred HHHHHHHHHhC----CCCCCCCC
Confidence 66665555444 55555554
No 36
>2q7s_A N-formylglutamate amidohydrolase; YP_297560.1, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.00A {Ralstonia eutropha} SCOP: c.56.5.9
Probab=28.67 E-value=55 Score=28.02 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCChHHHHHHHH-HhHHHHHHHHHHHHHHHHHH--------------------------------hHH------HHHHHH
Q 028075 73 TVNPKVLLELFS-MYRDWQEEKAKQISKRQEEI--------------------------------ENK------IEVADA 113 (214)
Q Consensus 73 ~~np~v~~ELfS-~YreWQe~~a~~isk~Qeei--------------------------------enk------IE~ada 113 (214)
.+++....+... .|+-+-..-++.|.+.+..- ++. -+.+++
T Consensus 131 ~l~~~e~~~Ri~~~~~PYH~aL~~~l~~~~a~~g~~vlid~HS~~~~~~~~~~~~~g~~rPd~~lG~~~g~s~~~~l~~~ 210 (290)
T 2q7s_A 131 KLTVAEVQRRINRYYRPYHAALTEAVEGAYQRFGAVWHLNLHSMPNNAYERLKIQSPRPLADFVLGDRDGTTCEPGLVDL 210 (290)
T ss_dssp CEEHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHSCEEEEEEEEECTTHHHHTTCCCSSCCCSEEEESTTTTSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecCCCCcccccccccCCCCCCeEEEecCCCCcCCHHHHHH
Confidence 455555544444 46777777777777654431 111 133444
Q ss_pred HHHHHHHHhccchhhh------hhhhhh---hccccchhhhHh-----------------hhhhHHHHHHhhhHHHH
Q 028075 114 LATKLLQRFGYSVSAM------KTSSQH---LSEVHALQVEIG-----------------ELKGRLTEVISNCDALC 164 (214)
Q Consensus 114 lA~KLlQR~n~S~S~M------ktts~h---L~~V~~Lqvevg-----------------ElKgrLteVisncdaLC 164 (214)
+. ..|+..||+|..= =++-+| -.++|.+|+||. .++..|..++..+-+..
T Consensus 211 ~~-~~l~~~g~~v~~N~Py~Gg~it~~yg~P~~g~~aiqiEi~~~lymde~~~~~~~~~~~l~~~L~~~l~~l~~~~ 286 (290)
T 2q7s_A 211 VE-RELREKGYTVARNDPYKGVQLIAQIGRPAERRNSLQIEIRRPLYMEEGTRERNEGFATLQRDLTLLTLRIAEYV 286 (290)
T ss_dssp HH-HHHHHTTCCEEESSSCCC-CHHHHHCBGGGTEEEEEEEEEGGGTEETTTTEECTHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHhhcCCEEEeCCCcCcchhHHhhCCCCCCcEEEEEEEchhhhcCCCcccCchHHHHHHHHHHHHHHHHHHHh
Confidence 33 3346677775311 133344 468999999993 78889999987766544
No 37
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=28.35 E-value=1.1e+02 Score=25.71 Aligned_cols=77 Identities=4% Similarity=0.032 Sum_probs=36.3
Q ss_pred cceeeeecCccCcchHHHhhhcc-cccCccccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHHHhHHHHHHHHHH
Q 028075 18 DDITTVSYKSESVDPILENIKSL-KITTPILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFSMYRDWQEEKAKQ 96 (214)
Q Consensus 18 DeITTVse~~e~~DP~LErLkSL-kIa~PiL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS~YreWQe~~a~~ 96 (214)
+.|.-|++.+..++=+.+-++.- .+. ++.+.. +--+.-+++.-.-.-+..+++-|..+.+|+..|++-.-+.|.+
T Consensus 166 pnIvgiK~s~gd~~~~~~~~~~~~~f~--v~~G~d--~~~~~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~ 241 (303)
T 2wkj_A 166 PGVGALXQTSGDLYQMEQIRREHPDLV--LYNGYD--NIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQK 241 (303)
T ss_dssp TTEEEEEECCCCHHHHHHHHHHCTTCE--EEECCG--GGHHHHHHHTCCEEEETTHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCeE--EEeCcH--HHHHHHHHCCCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHH
Confidence 45777777776544333222210 111 344433 1112222233222334456778888888766665433344544
Q ss_pred HH
Q 028075 97 IS 98 (214)
Q Consensus 97 is 98 (214)
+.
T Consensus 242 l~ 243 (303)
T 2wkj_A 242 LQ 243 (303)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 38
>2au5_A Conserved domain protein; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.10A {Enterococcus faecalis} SCOP: a.244.1.1
Probab=27.61 E-value=30 Score=28.02 Aligned_cols=64 Identities=31% Similarity=0.405 Sum_probs=41.4
Q ss_pred CCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhh
Q 028075 72 GTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKG 151 (214)
Q Consensus 72 ~~~np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKg 151 (214)
.+.+|.|+.+.= ---+|-++.|.-. |.- +.--|+..=||+ .+|+|||
T Consensus 41 S~F~P~VL~~ME-~~P~WL~Es~~~~---Q~~----------iV~SL~~~~N~~-------------------~~~~L~~ 87 (139)
T 2au5_A 41 SHFSPIVLAEME-KDPNWLEEAAGGM---QGV----------IVQSLLEDENFS-------------------SVEQLKG 87 (139)
T ss_dssp TTCCHHHHHHHH-HCTTHHHHHHHHH---HHH----------HHHHHTTCTTCS-------------------SHHHHHH
T ss_pred ccCCHHHHHHHh-hCchHHHHHHHHh---HHH----------HHHHHhccCCcC-------------------cHHHHHH
Confidence 478899888742 3356877665432 111 112233333443 4789999
Q ss_pred HHHHHHhhhHHHHHHHH
Q 028075 152 RLTEVISNCDALCKRIA 168 (214)
Q Consensus 152 rLteVisncdaLCKRI~ 168 (214)
.++-.|.-|+++.||=-
T Consensus 88 E~~~Li~LY~~~~~~~L 104 (139)
T 2au5_A 88 ELARLIRLYFALAKDNL 104 (139)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998743
No 39
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=27.03 E-value=1.9e+02 Score=24.53 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=42.2
Q ss_pred HHHHHHHhHHHH-HHHHHHHHHHHHhccchhhhhhhhhhh-ccccchhhhHhhhhhHHHHHHhh
Q 028075 98 SKRQEEIENKIE-VADALATKLLQRFGYSVSAMKTSSQHL-SEVHALQVEIGELKGRLTEVISN 159 (214)
Q Consensus 98 sk~QeeienkIE-~adalA~KLlQR~n~S~S~Mktts~hL-~~V~~LqvevgElKgrLteVisn 159 (214)
....+..+.-+| ..+.++-+|...||++..+.|-+..|= +-...| +- .+.+..|.+.|..
T Consensus 108 ~~v~~~~G~~~ee~~~~~~w~l~~~~g~~~~afk~a~~~~~~~l~~l-i~-~~~~~~L~e~i~~ 169 (275)
T 3aev_A 108 RLAAEKLGKDFEAAWREVWVPLEEEWGEVYAAFEDAAKDGIEVLKGH-VP-DEWLPVLKEIVEN 169 (275)
T ss_dssp HHHHHHHTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHHCGGGGBTT-BC-GGGHHHHHHHHHH
T ss_pred EEchhhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCcHHHHhh-CC-HHHHHHHHHHHHH
Confidence 334446666666 788899999999999999999888743 334455 33 5667777776654
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.54 E-value=2.1e+02 Score=27.69 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=24.4
Q ss_pred hhcccc-chhhhHhhhhhHHHHHHhhhHHHHHHHHhc
Q 028075 135 HLSEVH-ALQVEIGELKGRLTEVISNCDALCKRIAAE 170 (214)
Q Consensus 135 hL~~V~-~LqvevgElKgrLteVisncdaLCKRI~~e 170 (214)
...+|- -|+--|-.||.++..+|.|..+|=++|+.+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 566667777777777778877777777653
No 41
>2ym9_A Cell invasion protein SIPD; type 3 secretion, T3SS, needle TIP protein, H pathogen interaction, bacterial pathogenesis, TIP complex; 3.00A {Salmonella enterica subsp}
Probab=26.42 E-value=1.8e+02 Score=26.54 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhc---cccchhhhHhhhhhHHHHHHhhhH
Q 028075 85 MYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLS---EVHALQVEIGELKGRLTEVISNCD 161 (214)
Q Consensus 85 ~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~---~V~~LqvevgElKgrLteVisncd 161 (214)
-|+|--...++-|+...++--..-+-+=.-+++..|-||--++-|- .+++ +=..++.....||..|.+++.+|.
T Consensus 133 S~aeLW~~Is~~I~~I~sdYldvYa~Ivk~YTdyyQd~Ne~LSKlS---d~IsaGkDGN~IkFd~~s~k~~l~~l~~KY~ 209 (346)
T 2ym9_A 133 SDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMG---GWLLPGKDGNTVKLDVTSLKNDLNSLVNKYN 209 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHGGGG---GGEEECSSSSEEEECHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhccCCCCCeeeecHHHHHHHHHHHHHhcc
Confidence 3555556678888888887776777777788999999999888883 4443 333688889999999999998775
No 42
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=25.75 E-value=1e+02 Score=26.35 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=20.0
Q ss_pred CCCCCCCChHHHHHHHHHhHHHHHHHHHHHH
Q 028075 68 SSASGTVNPKVLLELFSMYRDWQEEKAKQIS 98 (214)
Q Consensus 68 Ss~S~~~np~v~~ELfS~YreWQe~~a~~is 98 (214)
-+..+++-|....+|+..|++-.-+.|.++.
T Consensus 240 is~~anv~P~~~~~l~~a~~~Gd~~~A~~l~ 270 (332)
T 2r8w_A 240 YSVVAGLLPVPALQLMRAAQAGNAEEAKRLD 270 (332)
T ss_dssp EESGGGTCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EeCHHHhCHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455688899999987777643334454443
No 43
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=25.71 E-value=2e+02 Score=21.08 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHHH
Q 028075 75 NPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLT 154 (214)
Q Consensus 75 np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLt 154 (214)
||..+-.++.-++..+.+.. .. +..++.+.+.+-+|++. ||.. -.+++.||.
T Consensus 76 d~~~v~~~l~kH~afe~El~----a~----~~~l~~v~~~g~~Li~~-~~~~-------------------~~~I~~rl~ 127 (149)
T 3f31_A 76 DPTNLQGKLQKHQAFEAEVQ----AN----SGAIVKLDETGNLMISE-GHFA-------------------SETIRTRLM 127 (149)
T ss_dssp SSSCHHHHHHHHHHHHHHHH----HT----THHHHHHHHHHHHHHHH-TCTT-------------------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHhc-CCCc-------------------HHHHHHHHH
Confidence 45555555544444443322 22 23455566666666664 3321 235678888
Q ss_pred HHHhhhHHHHHHHHhcC
Q 028075 155 EVISNCDALCKRIAAEG 171 (214)
Q Consensus 155 eVisncdaLCKRI~~eG 171 (214)
++-..++.||......|
T Consensus 128 ~l~~~W~~L~~~~~~r~ 144 (149)
T 3f31_A 128 ELHRQWELLLEKMREKG 144 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887654
No 44
>2j0o_A Invasin IPAD; type III secretion, cell invasion, T3SS, plasmid, virulence; 3.00A {Shigella flexneri} SCOP: a.250.1.1
Probab=25.69 E-value=1.9e+02 Score=26.16 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhc----cccchhhhHhhhhhHHHHHHhhhH
Q 028075 86 YRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLS----EVHALQVEIGELKGRLTEVISNCD 161 (214)
Q Consensus 86 YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~----~V~~LqvevgElKgrLteVisncd 161 (214)
|++--...++-|+...++--.-.+-+=.-+++..|-||--++.| +.|+. +=..+.....+||..|.+++++|.
T Consensus 117 ~~elw~~Is~~I~~I~sdYld~Ya~ivk~yTdyyQ~~ne~lskl---s~~I~aGg~DGn~IkFd~~~~k~~l~~~~~kY~ 193 (318)
T 2j0o_A 117 HRELWAKIANSINDINEQYLKVYEHAVSSYTQMYQDFSAVLSSL---AGWISPGGNDGNSVKLQVNSLKKALEELKEKYK 193 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEECSSSSSCEEECHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCCCCCCeeeecHHHHHHHHHHHHHHhc
Confidence 88877788888988888776666667777899999999988776 45555 344889999999999999998876
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.67 E-value=1.7e+02 Score=27.15 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=18.7
Q ss_pred hhccccchhhhHhhhh---hHHHHHHhhhHHHHHH
Q 028075 135 HLSEVHALQVEIGELK---GRLTEVISNCDALCKR 166 (214)
Q Consensus 135 hL~~V~~LqvevgElK---grLteVisncdaLCKR 166 (214)
+|..++.||+-|.++. +||+.-|..|-.=||+
T Consensus 132 q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~ 166 (390)
T 1deq_A 132 QVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKG 166 (390)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444455555544433 4677777777777764
No 46
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=25.36 E-value=2.2e+02 Score=23.00 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=26.9
Q ss_pred CCCChHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhHHHHHH
Q 028075 72 GTVNPKVLLELFSMYRDWQEEK-AKQISKRQEEIENKIEVA 111 (214)
Q Consensus 72 ~~~np~v~~ELfS~YreWQe~~-a~~isk~QeeienkIE~a 111 (214)
...||..|.|.+.+..+|.+-. ...|.+...++..+|+-.
T Consensus 127 ~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~~~ 167 (207)
T 3bvo_A 127 YEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEF 167 (207)
T ss_dssp SSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4689999999988777776532 344666666666666544
No 47
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=25.33 E-value=1.6e+02 Score=23.50 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccch-hhhHhhhhhHHHHHHhhhHHHHHHHHhcC
Q 028075 93 KAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHAL-QVEIGELKGRLTEVISNCDALCKRIAAEG 171 (214)
Q Consensus 93 ~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~L-qvevgElKgrLteVisncdaLCKRI~~eG 171 (214)
.+.++.++=.++|+ -||.+..++.+++|-+. +-|+ +-+|-+|=..+-.|+-.++..++|+.-.+
T Consensus 57 ~~~~~~~~I~~lE~---~aD~i~~~i~~~L~~~f------------itP~dReDI~~L~~~lDdI~D~ie~~a~~l~l~~ 121 (227)
T 3l39_A 57 ERADYYKQIKDMER---EGDRLTHLIFDELSTTF------------ITPFDREDIHDLASCMDDVIDGINSSAKRIVIYN 121 (227)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCS------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcC------------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34444444444554 47888888888887543 3344 44577788888888888888888888777
Q ss_pred CcccccccCcc
Q 028075 172 PDSLKASIKPL 182 (214)
Q Consensus 172 PesLr~sv~pf 182 (214)
|+.++..++.|
T Consensus 122 ~~~~~~~~~~l 132 (227)
T 3l39_A 122 PRPISESGKEL 132 (227)
T ss_dssp CSSCCHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 76655444433
No 48
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=25.27 E-value=20 Score=25.58 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=20.2
Q ss_pred HhHHHHHHH-------HHHHHHHHHhccchhhhhhhhhh-hccccchhhhHh
Q 028075 104 IENKIEVAD-------ALATKLLQRFGYSVSAMKTSSQH-LSEVHALQVEIG 147 (214)
Q Consensus 104 ienkIE~ad-------alA~KLlQR~n~S~S~Mktts~h-L~~V~~Lqvevg 147 (214)
+.||++..+ .-+.++.+.+|+ ..+.++|.+ -.+|..|--.|-
T Consensus 138 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~--~~~~~Sa~~~~~gi~~l~~~i~ 187 (208)
T 2yc2_C 138 VANKTDLPPQRHQVRLDMAQDWATTNTL--DFFDVSANPPGKDADAPFLSIA 187 (208)
T ss_dssp EEECC-------CCCHHHHHHHHHHTTC--EEEECCC-------CHHHHHHH
T ss_pred EEECcccchhhccCCHHHHHHHHHHcCC--EEEEeccCCCCcCHHHHHHHHH
Confidence 456666554 456677788874 567777776 666666555443
No 49
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.16 E-value=78 Score=25.93 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=71.5
Q ss_pred ccC-CCCCCCcccceeeccCCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Q 028075 47 LTS-PPPTESSLTDILVRRSSTSSASGTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYS 125 (214)
Q Consensus 47 L~s-pp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S 125 (214)
++. |+.+++++.++=+-+.-. .+.-..+-+|.+=.|+=.+..+.+...-| ++...++.+..+|-.|++.++.=
T Consensus 15 ~~~~~~~~~~~~~~~~LP~~L~-----~LS~~eL~~LL~~~~dlL~~~v~~l~~~q-~~~~~~e~l~s~ae~ll~l~~~L 88 (192)
T 2p22_C 15 SPGLPEKVNEKSKNIPLPEGIN-----LLSSKEIIDLIQTHRHQLELYVTKFNPLT-DFAGKIHAFRDQFKQLEENFEDL 88 (192)
T ss_dssp CCCCC------CCCCCCSSGGG-----SCTTHHHHHHHHHCHHHHHHHGGGGSCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcccCCCCCHHHH-----hCCHHHHHHHHhChHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence 443 333477777666655432 22233555666555555555555443322 23333444477888888888887
Q ss_pred hhhhhhhhhhhccccchhhhHhhhhhHHH-HHHhhh--HHHHHHHHh
Q 028075 126 VSAMKTSSQHLSEVHALQVEIGELKGRLT-EVISNC--DALCKRIAA 169 (214)
Q Consensus 126 ~S~Mktts~hL~~V~~LqvevgElKgrLt-eVisnc--daLCKRI~~ 169 (214)
-.....+-..+.+++.|..+.......+. .+.++| ++|..|+..
T Consensus 89 e~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~ 135 (192)
T 2p22_C 89 HEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQ 135 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 77888888899999999999988888885 554665 678877754
No 50
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.94 E-value=84 Score=29.96 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHH-------------HHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhh
Q 028075 84 SMYRDWQEEKAK-------------QISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELK 150 (214)
Q Consensus 84 S~YreWQe~~a~-------------~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElK 150 (214)
.||.-|.+.-++ ++.++++.|..||..-= -.+++|| ..|..+.++|..|-
T Consensus 90 ~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~~IrvLq----------------~~l~~q~skIQRLE 152 (491)
T 1m1j_A 90 ETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-NRIKALQ----------------NSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------------HHHHHHHHHHHHHH
Q ss_pred hHHHHHHhhhHHHHHH
Q 028075 151 GRLTEVISNCDALCKR 166 (214)
Q Consensus 151 grLteVisncdaLCKR 166 (214)
-.+..-+..|..=|+|
T Consensus 153 ~dI~~q~~~Cr~pC~r 168 (491)
T 1m1j_A 153 VDIDIKIRACKGSCAR 168 (491)
T ss_dssp HHHHHHHHTTTTTBSS
T ss_pred HHHHHHHHHhcchhhh
No 51
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=24.92 E-value=2e+02 Score=26.77 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHHHHHH
Q 028075 78 VLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEVI 157 (214)
Q Consensus 78 v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLteVi 157 (214)
..++=+--|+|--...++-|+...++--...+-+=.-+++.+|-||--++.|-..-.-=++=..++..+..||..|..++
T Consensus 170 ~~a~~g~S~aeLw~~Isd~I~nIksdYldvYa~IvK~YTdyyQdfNeaLSklSdyIsAGkDGNkIkFd~~sfk~al~kl~ 249 (407)
T 2p7n_A 170 AAAGQGMADSDLWDMISDQIGKIKDNYLGVYENVVGQYTDFYKAFSDILSQMANWIKPGGDGNKVKLNVDALKAALEKLK 249 (407)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC---------CCHHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeeecHHHHHHHHHHHH
Confidence 33333445666556677888887777666666666778999999999888882222211344578888999999999999
Q ss_pred hhh
Q 028075 158 SNC 160 (214)
Q Consensus 158 snc 160 (214)
.+|
T Consensus 250 ~KY 252 (407)
T 2p7n_A 250 KDF 252 (407)
T ss_dssp HHT
T ss_pred Hhh
Confidence 999
No 52
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=24.50 E-value=1.6e+02 Score=22.22 Aligned_cols=18 Identities=11% Similarity=0.436 Sum_probs=10.0
Q ss_pred HHHHHHHhccchhhhhhh
Q 028075 115 ATKLLQRFGYSVSAMKTS 132 (214)
Q Consensus 115 A~KLlQR~n~S~S~Mktt 132 (214)
.++.|+..|+|+..+|.-
T Consensus 53 ~I~~lr~~G~sl~~I~~~ 70 (146)
T 3hh0_A 53 QIQSFKHLGFSLGEIQNI 70 (146)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 345556666666555543
No 53
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.16 E-value=1.4e+02 Score=27.01 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHH
Q 028075 76 PKVLLELFSMYRDWQEEKA--KQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRL 153 (214)
Q Consensus 76 p~v~~ELfS~YreWQe~~a--~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrL 153 (214)
+..+-++..+|.+|.+... +++..++.++..+|-. +.+=+ ....+-+.++..|.-+|.+|+..+
T Consensus 27 ~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~--------~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 27 VKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGK--------RRKKG------EPVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHTSC------CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhccc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888888876543 3444444444444422 11111 112233455566666666676676
Q ss_pred HHHHhhhHHHHHHH
Q 028075 154 TEVISNCDALCKRI 167 (214)
Q Consensus 154 teVisncdaLCKRI 167 (214)
.++-...+.+.-+|
T Consensus 93 ~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 93 EELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666666554
No 54
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=23.84 E-value=1.4e+02 Score=24.63 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=38.3
Q ss_pred cceeeeecCccCcchHHHhhhcccccCccccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHH
Q 028075 18 DDITTVSYKSESVDPILENIKSLKITTPILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFSMYRDWQEEKAKQI 97 (214)
Q Consensus 18 DeITTVse~~e~~DP~LErLkSLkIa~PiL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS~YreWQe~~a~~i 97 (214)
+.|.-|++.+..++-+.+-++ ..=-=-++.+.. +--+.-+.++-.-.-+..+++-|+...+|+..|++=.-+.|.++
T Consensus 146 pnivgiKdssgd~~~~~~~~~-~~~~f~v~~G~d--~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l 222 (283)
T 2pcq_A 146 PNVLGIKDSSGDLSRIAFYQA-RLQEFRVYTGHA--PTFLGALALGAEGGILAAANLAPRAYRALLDHFREGRLAEAQEL 222 (283)
T ss_dssp TTEEEEEECSCCHHHHHHHHH-HCSSCEEEECCG--GGHHHHHHTTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHh-cCCCEEEEECcH--HHHHHHHHcCCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHH
Confidence 457778877765543333222 100001344432 11122222332334455678889999987776664333445444
Q ss_pred HH
Q 028075 98 SK 99 (214)
Q Consensus 98 sk 99 (214)
..
T Consensus 223 ~~ 224 (283)
T 2pcq_A 223 QK 224 (283)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 55
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.70 E-value=2.8e+02 Score=25.53 Aligned_cols=92 Identities=8% Similarity=0.119 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccch--hhhhhhhhhhccccchhhhHhhhhh
Q 028075 76 PKVLLELFSMYRDWQEEK--AKQISKRQEEIENKIEVADALATKLLQRFGYSV--SAMKTSSQHLSEVHALQVEIGELKG 151 (214)
Q Consensus 76 p~v~~ELfS~YreWQe~~--a~~isk~QeeienkIE~adalA~KLlQR~n~S~--S~Mktts~hL~~V~~LqvevgElKg 151 (214)
+..+-++..+|.+|++.. ++++..++.++...|-.. .+=+-.. ..-....+-+.++..|.-+|.+|+.
T Consensus 66 ~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~--------~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~ 137 (501)
T 1wle_A 66 SKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL--------VVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYP 137 (501)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhcCccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888764 344444444444444321 0000000 0000112234455566666666666
Q ss_pred HHHHHHhhhHHHHHHHHhcCCccccccc
Q 028075 152 RLTEVISNCDALCKRIAAEGPDSLKASI 179 (214)
Q Consensus 152 rLteVisncdaLCKRI~~eGPesLr~sv 179 (214)
.+.++-..-+.+.-+| |--+-.+|
T Consensus 138 ~~~~~~~~l~~~l~~i----PN~~~~~v 161 (501)
T 1wle_A 138 KEAQLEEQFYLRALRL----PNQTHPDV 161 (501)
T ss_dssp HHHHHHHHHHHHHTTS----CCCCCTTC
T ss_pred HHHHHHHHHHHHHHhC----CCCCCCCC
Confidence 6666666666655544 55444444
No 56
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.69 E-value=2.5e+02 Score=24.93 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHH
Q 028075 76 PKVLLELFSMYRDWQEEKA--KQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRL 153 (214)
Q Consensus 76 p~v~~ELfS~YreWQe~~a--~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrL 153 (214)
+..+-++.++|.+|.+... +++..++.++..+|-. +.+=+ ....+-+.++..|.-+|.+++..+
T Consensus 26 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--------~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 91 (425)
T 2dq3_A 26 VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGK--------LKREG------KDTTEIQNRVKELKEEIDRLEEEL 91 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG--------GGSSC------SCTTTSTTHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhcC------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888876543 2333333333333311 00000 112223445555555666666666
Q ss_pred HHHHhhhHHHHHHH
Q 028075 154 TEVISNCDALCKRI 167 (214)
Q Consensus 154 teVisncdaLCKRI 167 (214)
.++-...+.+.-+|
T Consensus 92 ~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 92 RKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC
Confidence 66655555555444
No 57
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=23.09 E-value=2.2e+02 Score=20.86 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHHHhccchhhhhhhhhhhcccc---chhhhHhhhhhHHHHHHhhhHHHHHH
Q 028075 117 KLLQRFGYSVSAMKTSSQHLSEVH---ALQVEIGELKGRLTEVISNCDALCKR 166 (214)
Q Consensus 117 KLlQR~n~S~S~Mktts~hL~~V~---~LqvevgElKgrLteVisncdaLCKR 166 (214)
.|++-+.-+.-.|+..-++|-+-. .+=.++-++-..|+.||..|+++++-
T Consensus 43 el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~vl~ry~~~~~~ 95 (103)
T 1wrd_A 43 ELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFLRHERFERF 95 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 355566666667777766665321 23456778888999999999999764
No 58
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=22.87 E-value=82 Score=26.10 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=36.1
Q ss_pred cceeeeecCccCcchHHHhhhcccccCccccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHH
Q 028075 18 DDITTVSYKSESVDPILENIKSLKITTPILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFSMYRDWQEEKAKQI 97 (214)
Q Consensus 18 DeITTVse~~e~~DP~LErLkSLkIa~PiL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS~YreWQe~~a~~i 97 (214)
+.|.-|++.+..++=+. ++....=---++.+.. +--+.-+.+.-.-.-+..+++-|....+|+..|++-.-+.|.++
T Consensus 158 pnIvgiK~s~gd~~~~~-~~~~~~~~f~v~~G~d--~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l 234 (293)
T 1f6k_A 158 PKVLGVKFTAGDFYLLE-RLKKAYPNHLIWAGFD--EMMLPAASLGVDGAIGSTFNVNGVRARQIFELTKAGKLKEALEI 234 (293)
T ss_dssp TTEEEEEECSCCHHHHH-HHHHHCTTSEEEECCG--GGHHHHHHTTCSEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCEEEEEECCCCHHHHH-HHHHhCCCeEEEECcH--HHHHHHHHCCCcEEEeCHHHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 45777777765543332 2222100001344443 11122222222223344567788888887666654333445444
Q ss_pred H
Q 028075 98 S 98 (214)
Q Consensus 98 s 98 (214)
.
T Consensus 235 ~ 235 (293)
T 1f6k_A 235 Q 235 (293)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=22.10 E-value=2.9e+02 Score=21.74 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=49.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhh-hhhhccccchhhhHhhhhhHHHHHHhhhH
Q 028075 83 FSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTS-SQHLSEVHALQVEIGELKGRLTEVISNCD 161 (214)
Q Consensus 83 fS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktt-s~hL~~V~~LqvevgElKgrLteVisncd 161 (214)
+++..-|+.-..+ ....-+..+.+|+.|...+.+.+.-=..-++.. =.+.+++..++-++.+.-..|...-.+|+
T Consensus 65 ~t~~~~w~~~l~~----~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~ 140 (301)
T 2efk_A 65 FSQQQSFVQILQE----VNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFE 140 (301)
T ss_dssp SHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677654321 111223344555555544555444333333322 33556778888888888888888999999
Q ss_pred HHHHHHH
Q 028075 162 ALCKRIA 168 (214)
Q Consensus 162 aLCKRI~ 168 (214)
.+|+..+
T Consensus 141 ~~~~e~e 147 (301)
T 2efk_A 141 RDCREAE 147 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
No 60
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=22.04 E-value=3.5e+02 Score=22.66 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=37.3
Q ss_pred cceeeeecCccCcchHHHhhhcccccCc-----cccCCCCCC-CcccceeeccCCCCCCCCCCChHHHHHHHHHhHHHHH
Q 028075 18 DDITTVSYKSESVDPILENIKSLKITTP-----ILTSPPPTE-SSLTDILVRRSSTSSASGTVNPKVLLELFSMYRDWQE 91 (214)
Q Consensus 18 DeITTVse~~e~~DP~LErLkSLkIa~P-----iL~spp~~E-ssLtDILvrk~ssSs~S~~~np~v~~ELfS~YreWQe 91 (214)
+.|.-|++.+.+++-+.+-++.. ++ ++.+.. + --+.-+.+.-.---+..+++-|+...+|+..|++-.-
T Consensus 161 pnIvgiKdssgd~~~~~~~~~~~---~~~~~f~v~~G~d--~~~~~~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~ 235 (314)
T 3d0c_A 161 DKLVGIKYAINDIQRVTQVMRAV---PKSSNVAFICGTA--EKWAPFFYHAGAVGFTSGLVNVFPQKSFALLEALEEGNQ 235 (314)
T ss_dssp TTEEEEEECCCCHHHHHHHHHHS---CGGGCCEEEETTH--HHHHHHHHHHTCCEEEESGGGTCHHHHHHHHHHHHHTCH
T ss_pred CCEEEEEeCCCCHHHHHHHHHhc---CCCCCEEEEEeCc--HHHHHHHHHcCCCEEEecHHHhhHHHHHHHHHHHHCCCH
Confidence 45777887776554333322221 11 344432 1 1112222332224455678999999887666654333
Q ss_pred HHHHHH
Q 028075 92 EKAKQI 97 (214)
Q Consensus 92 ~~a~~i 97 (214)
+.|.++
T Consensus 236 ~~A~~l 241 (314)
T 3d0c_A 236 EKIWDV 241 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 61
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=21.97 E-value=1.6e+02 Score=24.69 Aligned_cols=33 Identities=18% Similarity=0.060 Sum_probs=23.3
Q ss_pred CCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHH
Q 028075 67 TSSASGTVNPKVLLELFSMYRDWQEEKAKQISK 99 (214)
Q Consensus 67 sSs~S~~~np~v~~ELfS~YreWQe~~a~~isk 99 (214)
.-+..+++-|..+.++|..|++..-+.|.++..
T Consensus 218 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~ 250 (307)
T 3s5o_A 218 GVCALANVLGAQVCQLERLCCTGQWEDAQKLQH 250 (307)
T ss_dssp EECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEechhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345567889999999888887655556665543
No 62
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=21.62 E-value=1.3e+02 Score=23.94 Aligned_cols=62 Identities=10% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccchhhhhhhhhhhccccc-hhhhHhhhhhHHHHHHhhhHHHHHHHHhcCCc
Q 028075 112 DALATKLLQRFGYSVSAMKTSSQHLSEVHA-LQVEIGELKGRLTEVISNCDALCKRIAAEGPD 173 (214)
Q Consensus 112 dalA~KLlQR~n~S~S~Mktts~hL~~V~~-LqvevgElKgrLteVisncdaLCKRI~~eGPe 173 (214)
=-+.+.|+|-.+..+...-+...++.++.. +-.-+.|++..+.+.+...+.+.+|+...+++
T Consensus 68 L~~~l~Ll~SW~~PL~~L~~~~~~l~~~~~~il~Kakei~e~~~~L~egi~~i~~~~~~~~~~ 130 (186)
T 3n06_A 68 LSLIVSILRSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLERMELIVSQVHPETKE 130 (186)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 356889999999988888887777766643 34456677888888888888999999655443
No 63
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=21.06 E-value=2e+02 Score=24.47 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHhccchhhh------hhhhhhhccccchhhhHhhhhhHHHH
Q 028075 88 DWQEEKAKQISKRQEEIENKIE------VADALATKLLQRFGYSVSAM------KTSSQHLSEVHALQVEIGELKGRLTE 155 (214)
Q Consensus 88 eWQe~~a~~isk~QeeienkIE------~adalA~KLlQR~n~S~S~M------ktts~hL~~V~~LqvevgElKgrLte 155 (214)
|=||+..+.|..-=-+||.++| +|+-||..++ |.+.|-= -++-+.|-+.++.-+|= =|--|--
T Consensus 79 E~qEeiir~IA~qLAqiGD~md~sI~P~lV~~La~qf~---N~~lsEEdrr~~LAaaleql~Qt~P~Dmeq--EKtmLvl 153 (197)
T 2bid_A 79 ESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLR---NTSRSEEDRNRDLATALEQLLQAYPRDMEK--EKTMLVL 153 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHH---SGGGHHHHHHHHHHHHHHHHHTTSCCSSCS--HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHHCCCcHhH--HHHHHHH
Confidence 4577877888777778888876 8999998775 6666532 23334444444544442 2222221
Q ss_pred HHhhhHHHHHHHHhcCCcccccccC
Q 028075 156 VISNCDALCKRIAAEGPDSLKASIK 180 (214)
Q Consensus 156 VisncdaLCKRI~~eGPesLr~sv~ 180 (214)
.==|+|.++..-|--||..++
T Consensus 154 ----amLLAKKVa~htPSLLrdVF~ 174 (197)
T 2bid_A 154 ----ALLLAKKVASHTPSLLRDVFH 174 (197)
T ss_dssp ----HHHHHHHHHHHCTTCHHHHHH
T ss_pred ----HHHHHHHHHhcChHHHHHHHH
Confidence 234899999999999987654
No 64
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.43 E-value=38 Score=27.98 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCCcceeeeecCccCcchHHHhhhcccc--cCccccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHH
Q 028075 15 RPIDDITTVSYKSESVDPILENIKSLKI--TTPILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFS 84 (214)
Q Consensus 15 ~~~DeITTVse~~e~~DP~LErLkSLkI--a~PiL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS 84 (214)
..+|.| +|.+.......+.+.+.+..- .|+-|.-- ...++-.+++-|.-.+-...+|..-+.|+||
T Consensus 131 ~~gD~I-~V~~~~r~~~~i~~~~~~~~~~~~p~~l~~d---~~~~~g~~~~~p~r~~i~~~ine~lvvE~Ys 198 (201)
T 3bbn_D 131 KPQDTI-MARDEQKSIALIQNSLDLSPREELPKHLTLN---PFPYKGLVNQIIDSKWVGLKINELLVVEYYS 198 (201)
T ss_dssp CTTEEE-EECSSTTSCHHHHHHSSSTTTSCCCTTEEEE---TTTTEEEECSCCCGGGCCCSCCHHHHTTTSC
T ss_pred CCCCEE-EEccccchHHHHHHHHHhhcccCCCCceEee---cccCEEEEEecCCHHHCCCCCCcceEEEEec
Confidence 346766 678888888889888876542 23344322 2356778889999888889999999999886
No 65
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.37 E-value=3.3e+02 Score=21.71 Aligned_cols=87 Identities=23% Similarity=0.354 Sum_probs=57.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHh---HHHHHHHHH----------HH---HHHHHhccchhhhhhhhhhhcc-c---cchh
Q 028075 84 SMYRDWQEEKAKQISKRQEEIE---NKIEVADAL----------AT---KLLQRFGYSVSAMKTSSQHLSE-V---HALQ 143 (214)
Q Consensus 84 S~YreWQe~~a~~isk~Qeeie---nkIE~adal----------A~---KLlQR~n~S~S~Mktts~hL~~-V---~~Lq 143 (214)
+|+.+ -+.+.++++|+..||+ +++++-... +. -|+|.+.-+.-.|+..-++|-+ + ..+=
T Consensus 43 ~m~~~-d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L 121 (158)
T 1naf_A 43 EMVQE-DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEAL 121 (158)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHH
T ss_pred HHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 34543 3667889999988775 445544332 11 5777777777888888888873 3 2356
Q ss_pred hhHhhhhhHHHHHHhhhHHHHHHHHhcC
Q 028075 144 VEIGELKGRLTEVISNCDALCKRIAAEG 171 (214)
Q Consensus 144 vevgElKgrLteVisncdaLCKRI~~eG 171 (214)
.|+.++-..|+.||..|+.+.+.-...|
T Consensus 122 ~elL~~ND~Ln~vl~kY~~~~~g~~~~~ 149 (158)
T 1naf_A 122 AEILQANDNLTQVINLYKQLVRGEEVNG 149 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCC
Confidence 7888999999999999999976544444
No 66
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=20.03 E-value=1e+02 Score=22.77 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=41.0
Q ss_pred hccccchhhhHhhhhhHHHHHHhhhHHHHHHHHhcCCcccccccCcc
Q 028075 136 LSEVHALQVEIGELKGRLTEVISNCDALCKRIAAEGPDSLKASIKPL 182 (214)
Q Consensus 136 L~~V~~LqvevgElKgrLteVisncdaLCKRI~~eGPesLr~sv~pf 182 (214)
++.|+.+|.||..-+.++.|.=.--|.|-=||-.+-|.-|+-...|-
T Consensus 20 i~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~iLq~p~~~~ 66 (75)
T 3tso_C 20 LQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSILRVPYEPS 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBSSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCccc
Confidence 45688899999999999999888889999999999999999876554
Done!