Query 028075
Match_columns 214
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 09:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028075.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028075hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c06a_ d.66.1.2 (A:) Ribosoma 74.9 2.1 0.00015 32.6 5.1 67 14-84 92-158 (159)
2 d1q08a_ a.6.1.3 (A:) Transcrip 51.6 4.1 0.0003 27.6 2.4 33 129-161 41-73 (94)
3 d1lvfa_ a.47.2.1 (A:) Syntaxin 49.7 12 0.00089 25.8 4.8 72 81-155 17-105 (106)
4 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 48.5 30 0.0022 23.5 6.8 32 142-173 47-78 (196)
5 d1seta1 a.2.7.1 (A:1-110) Sery 43.3 33 0.0024 22.9 6.2 34 134-167 68-101 (110)
6 d1quua1 a.7.1.1 (A:1-124) alph 41.1 41 0.003 21.7 9.8 71 72-170 43-113 (124)
7 d1o1ya_ c.23.16.1 (A:) Hypothe 37.7 23 0.0017 26.4 5.0 52 71-122 176-227 (230)
8 d2gy9d1 d.66.1.2 (D:2-205) Rib 37.6 14 0.001 28.8 3.8 67 14-84 135-203 (204)
9 d2q7sa1 c.56.5.9 (A:10-289) N- 37.1 24 0.0018 26.9 5.1 94 73-166 121-278 (280)
10 d1u5pa1 a.7.1.1 (A:1662-1771) 36.9 45 0.0033 20.9 6.8 23 148-170 78-100 (110)
11 d2h9da1 a.130.1.1 (A:1-94) Sal 33.1 38 0.0028 22.4 5.1 57 101-166 10-67 (94)
12 d1sgma2 a.121.1.1 (A:78-188) P 32.7 43 0.0031 21.1 5.1 44 72-119 37-80 (111)
13 d2au5a1 a.244.1.1 (A:1-132) Hy 28.3 13 0.00097 27.9 2.1 64 72-168 38-101 (132)
14 d1eaka1 a.20.1.2 (A:32-107) Ge 27.9 14 0.001 25.1 2.1 13 113-125 17-29 (76)
15 d1su3a1 a.20.1.2 (A:32-98) Fib 26.3 12 0.00089 24.4 1.4 12 114-125 2-13 (67)
16 d2uubd1 d.66.1.2 (D:2-209) Rib 25.8 34 0.0025 26.7 4.3 67 14-84 139-207 (208)
17 d2r25a1 a.24.10.2 (A:2-167) Ph 25.8 35 0.0025 24.5 4.1 18 69-86 3-20 (166)
18 d1e5da2 d.157.1.3 (A:2-250) Ru 25.2 13 0.00096 26.8 1.5 18 75-92 231-248 (249)
19 d1ozza_ g.3.7.4 (A:) Defensin 25.1 11 0.00077 23.9 0.8 13 157-169 15-27 (44)
20 d1vf6a_ a.194.1.1 (A:) Associa 24.4 42 0.0031 22.2 3.9 49 109-157 3-57 (58)
21 d1q1la_ d.258.1.1 (A:) Chorism 24.4 10 0.00075 32.5 0.9 31 109-145 142-172 (397)
22 d1t72a_ a.7.12.1 (A:) Phosphat 23.4 1.1E+02 0.0083 21.3 8.7 52 80-131 32-83 (215)
23 d1wrua2 b.106.1.1 (A:3-176) Ba 23.0 18 0.0013 24.9 1.9 52 111-171 108-159 (174)
24 d1i7da_ e.10.1.1 (A:) DNA topo 23.0 28 0.002 30.0 3.5 52 109-177 310-361 (620)
25 d1hl2a_ c.1.10.1 (A:) N-acetyl 22.7 63 0.0046 24.0 5.2 31 70-100 206-236 (295)
26 d1yt3a3 c.55.3.5 (A:1-193) Rib 21.8 20 0.0015 26.0 2.0 34 135-168 158-191 (193)
27 d1yvia1 a.24.10.2 (A:2-143) Hi 21.4 1.2E+02 0.0086 20.7 6.3 41 75-118 38-81 (142)
28 d1t33a1 a.4.1.9 (A:1-88) Putat 20.3 97 0.007 19.3 5.9 21 110-132 17-37 (88)
No 1
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=74.91 E-value=2.1 Score=32.62 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=53.4
Q ss_pred CCCCcceeeeecCccCcchHHHhhhcccccCccccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHH
Q 028075 14 QRPIDDITTVSYKSESVDPILENIKSLKITTPILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFS 84 (214)
Q Consensus 14 q~~~DeITTVse~~e~~DP~LErLkSLkIa~PiL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS 84 (214)
-.++|.|+ |++++.....+.+.+..-.-.|+.|.-- ...++=.+++-|.-..-...+|++-+.|++|
T Consensus 92 vk~GDvIs-vkeksk~~~~v~~~~~~~~~~P~wL~vD---~~~l~g~v~~~P~r~eIp~~ine~LVVEyYS 158 (159)
T d1c06a_ 92 VKPGQTIA-VREKSRNLQVIKEALEANNYIPDYLSFD---PEKMEGTYTRLPERSELPAEINEALIVEFYS 158 (159)
T ss_dssp CCSSCEEE-ECGGGSSCHHHHHHTTCCCCCCSSEEEE---TTTTEEEECSCCCTTTSCSSCCCHHHHHHHH
T ss_pred ecCCcEEe-eccccchHHHHHHHHHccCCCCCEEEEE---cccCEEEEEEecCHHHCCCCCCccEEEEecc
Confidence 46688775 8888888888888888766666666633 3557778889999888889999999999987
No 2
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=51.58 E-value=4.1 Score=27.55 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=25.8
Q ss_pred hhhhhhhhccccchhhhHhhhhhHHHHHHhhhH
Q 028075 129 MKTSSQHLSEVHALQVEIGELKGRLTEVISNCD 161 (214)
Q Consensus 129 Mktts~hL~~V~~LqvevgElKgrLteVisncd 161 (214)
..-..+||.+|..-..|+..|+..|......|+
T Consensus 41 ~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~c~ 73 (94)
T d1q08a_ 41 KGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334567888888888888888889988888874
No 3
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=49.67 E-value=12 Score=25.76 Aligned_cols=72 Identities=11% Similarity=0.259 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHH-------HHHHHHHHHHHhHHHHHHHH----------HHHHHHHHhccchhhhhhhhhhhccccchh
Q 028075 81 ELFSMYRDWQEEK-------AKQISKRQEEIENKIEVADA----------LATKLLQRFGYSVSAMKTSSQHLSEVHALQ 143 (214)
Q Consensus 81 ELfS~YreWQe~~-------a~~isk~QeeienkIE~ada----------lA~KLlQR~n~S~S~Mktts~hL~~V~~Lq 143 (214)
-+=++|+.|++.. ..++.....||.+-++.++. ++.+=-.|||.+.. .-+.|=+-|...+
T Consensus 17 ~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~---ei~~Rr~fi~~~~ 93 (106)
T d1lvfa_ 17 TAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDAT---ELSIRKAFITSTR 93 (106)
T ss_dssp HHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHH---HHHHHHHHHHHHH
Confidence 3557888887653 13444445555555543331 12233457776643 3456677778888
Q ss_pred hhHhhhhhHHHH
Q 028075 144 VEIGELKGRLTE 155 (214)
Q Consensus 144 vevgElKgrLte 155 (214)
-+|.+||..|+.
T Consensus 94 ~~I~~~~~~l~~ 105 (106)
T d1lvfa_ 94 QIVRDMKDQMSA 105 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 889999888764
No 4
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.50 E-value=30 Score=23.46 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=19.5
Q ss_pred hhhhHhhhhhHHHHHHhhhHHHHHHHHhcCCc
Q 028075 142 LQVEIGELKGRLTEVISNCDALCKRIAAEGPD 173 (214)
Q Consensus 142 LqvevgElKgrLteVisncdaLCKRI~~eGPe 173 (214)
+.-+|..+...++.+...|..+-+.+...+++
T Consensus 47 ~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~ 78 (196)
T d1fioa_ 47 LRHSLDNFVAQATDLQFKLKNEIKSAQRDGIH 78 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 44566666666666666666666666555443
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=43.30 E-value=33 Score=22.92 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=26.0
Q ss_pred hhhccccchhhhHhhhhhHHHHHHhhhHHHHHHH
Q 028075 134 QHLSEVHALQVEIGELKGRLTEVISNCDALCKRI 167 (214)
Q Consensus 134 ~hL~~V~~LqvevgElKgrLteVisncdaLCKRI 167 (214)
..+.++..|.-+|.++...+.++-...+.++-+|
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~i 101 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLEALLLQV 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456777788888888888888888888777654
No 6
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.11 E-value=41 Score=21.65 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=46.7
Q ss_pred CCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhh
Q 028075 72 GTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKG 151 (214)
Q Consensus 72 ~~~np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKg 151 (214)
..-||..+-.+..-|.++..+... .+.+|+.+..+|-+|+..-++.. .+++.
T Consensus 43 ~~~d~~~v~~l~~~h~~~~~~i~~--------~~~~v~~l~~~~~~L~~~~~~~~--------------------~~i~~ 94 (124)
T d1quua1 43 ESASLTEVRALLRKHEAFESDLAA--------HQDRVEQIAAIAQELNELDYHDA--------------------VNVND 94 (124)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHTTCTTH--------------------HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhhccccH--------------------HHHHH
Confidence 346788888888888777765432 34566677777777776644322 35566
Q ss_pred HHHHHHhhhHHHHHHHHhc
Q 028075 152 RLTEVISNCDALCKRIAAE 170 (214)
Q Consensus 152 rLteVisncdaLCKRI~~e 170 (214)
++.++-..++.||.+++..
T Consensus 95 ~~~~l~~rW~~L~~~~~~R 113 (124)
T d1quua1 95 RCQKICDQWDRLGTLTQKR 113 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777776543
No 7
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}
Probab=37.70 E-value=23 Score=26.45 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=33.2
Q ss_pred CCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 028075 71 SGTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRF 122 (214)
Q Consensus 71 S~~~np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~ 122 (214)
=.-+|++.+..++..|+++-+..........+..+..-++++++..++|.||
T Consensus 176 HPE~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 227 (230)
T d1o1ya_ 176 HIEVGARTMKRWIEAYKDELEKKKIDPRLLLETAEREEKVLKGLLRSLLERM 227 (230)
T ss_dssp BSSCCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888888876544332333333344444466777888888887
No 8
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=37.58 E-value=14 Score=28.84 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=49.8
Q ss_pred CCCCcceeeeecCccCcchHHHhhhccc--ccCccccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHH
Q 028075 14 QRPIDDITTVSYKSESVDPILENIKSLK--ITTPILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFS 84 (214)
Q Consensus 14 q~~~DeITTVse~~e~~DP~LErLkSLk--Ia~PiL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS 84 (214)
=.++|.|+ |++++.....+.+.+.... -.|+.|.-- ...|+=.+++.|.-.+-...+|+.-+.|++|
T Consensus 135 vk~GDvIs-vkeksk~~~~i~~~~e~~~~~~~P~wLevd---~~~l~g~v~~~P~reei~~~ineqLVVEyYS 203 (204)
T d2gy9d1 135 VSPNDVVS-IREKAKKQSRVKAALELAEQREKPTWLEVD---AGKMEGTFKRKPERSDLSADINEHLIVELYS 203 (204)
T ss_dssp CCTTCBEE-ECTTGGGCHHHHHHHHHHTTCCCCTTEEEE---TTTTEEEECSCCCTTTCCCSCCHHHHHHHTT
T ss_pred ecCCCEEE-eccchhHHHHHHHHHHhcccCCCCCeEEEe---cccCEEEEEeccCHHHCCCCCCccEEEEecc
Confidence 45688885 7788888888878776542 234455422 3457778999999999889999999999986
No 9
>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase {Ralstonia eutropha [TaxId: 106590]}
Probab=37.05 E-value=24 Score=26.94 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=58.5
Q ss_pred CCChHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhHHH---------------------------------H----HHHHH
Q 028075 73 TVNPKVLLEL-FSMYRDWQEEKAKQISKRQEEIENKI---------------------------------E----VADAL 114 (214)
Q Consensus 73 ~~np~v~~EL-fS~YreWQe~~a~~isk~QeeienkI---------------------------------E----~adal 114 (214)
.+++....+. -..|+-|-..-.+.|.++....+.-| . ....+
T Consensus 121 ~l~~~e~~~Ri~~yy~PyH~~L~~~l~~~~~~~g~~ilid~HSm~~~~~~~~~~~~~r~~~~~~lg~~~~~s~~~~~~~~ 200 (280)
T d2q7sa1 121 KLTVAEVQRRINRYYRPYHAALTEAVEGAYQRFGAVWHLNLHSMPNNAYERLKIQSPRPLADFVLGDRDGTTCEPGLVDL 200 (280)
T ss_dssp CEEHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHSCEEEEEEEEECTTHHHHTTCCCSSCCCSEEEESTTTTSSCHHHHHH
T ss_pred CCCHHHHHHHHHHhcChHHHHHHHHHhhhhhhcceeEEEEeeeecccccccccCCCCCccceeeeecCCCcccchHHHHH
Confidence 3445554443 34678888888888877666532110 1 12245
Q ss_pred HHHHHHHhccchh---------hhhhhhhhhccccchhhhH-h----------------hhhhHHHHHHhhhHHHHHH
Q 028075 115 ATKLLQRFGYSVS---------AMKTSSQHLSEVHALQVEI-G----------------ELKGRLTEVISNCDALCKR 166 (214)
Q Consensus 115 A~KLlQR~n~S~S---------~Mktts~hL~~V~~Lqvev-g----------------ElKgrLteVisncdaLCKR 166 (214)
...+++..||+|. +.++-.+|-.+||.+|+|| . .+|..|++++..+-+..+|
T Consensus 201 ~~~~~~~~g~~V~~N~Py~Gg~i~~~~g~p~~~i~aiqIEI~r~LYmdE~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 278 (280)
T d2q7sa1 201 VERELREKGYTVARNDPYKGVQLIAQIGRPAERRNSLQIEIRRPLYMEEGTRERNEGFATLQRDLTLLTLRIAEYVRR 278 (280)
T ss_dssp HHHHHHHTTCCEEESSSCCC-CHHHHHCBGGGTEEEEEEEEEGGGTEETTTTEECTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCcEEeeCCcccCccchhhhCCccCCCceEEEEEchhhhCCCcccCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566778888875 3444455667899999998 2 4667777777666555544
No 10
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=36.87 E-value=45 Score=20.90 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=17.6
Q ss_pred hhhhHHHHHHhhhHHHHHHHHhc
Q 028075 148 ELKGRLTEVISNCDALCKRIAAE 170 (214)
Q Consensus 148 ElKgrLteVisncdaLCKRI~~e 170 (214)
+++.++..+-..++.||..+...
T Consensus 78 ~i~~~~~~l~~~w~~l~~~~~~R 100 (110)
T d1u5pa1 78 QVKDKRETINGRFQRIKSMAAAR 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888877654
No 11
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.13 E-value=38 Score=22.41 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=34.2
Q ss_pred HHHHhHHHHHHHHHHHHHH-HHhccchhhhhhhhhhhccccchhhhHhhhhhHHHHHHhhhHHHHHH
Q 028075 101 QEEIENKIEVADALATKLL-QRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEVISNCDALCKR 166 (214)
Q Consensus 101 QeeienkIE~adalA~KLl-QR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLteVisncdaLCKR 166 (214)
=+++.++|+..|.--++|| +|+.+.--+-+--.+|- .|.- .+|-.+||.+..++|+.
T Consensus 10 L~~lR~~ID~ID~~i~~LL~~R~~l~~~i~~~K~~~~-~v~d--------~~Re~~vl~~~~~~a~~ 67 (94)
T d2h9da1 10 LADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEA-AIPA--------PERVAAMLPERARWAEE 67 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcC-CCCc--------HHHHHHHHHHHHHHHhh
Confidence 4788999999998887776 67776544333323332 2211 46777888888777764
No 12
>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=32.74 E-value=43 Score=21.13 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 028075 72 GTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLL 119 (214)
Q Consensus 72 ~~~np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLl 119 (214)
+..|+.+-..+-..|..|+..-++.+...|.+ -+-+++||.-++
T Consensus 37 ~~~~e~ir~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~lA~~l~ 80 (111)
T d1sgma2 37 ALISEPLRTVCMKVFKSWEAVFARKLMENGFA----EEEANQLGTLIN 80 (111)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC----cccHHHHHHHHH
Confidence 57899999999999999999998888655532 234677776654
No 13
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=28.26 E-value=13 Score=27.92 Aligned_cols=64 Identities=31% Similarity=0.405 Sum_probs=41.4
Q ss_pred CCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhh
Q 028075 72 GTVNPKVLLELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKG 151 (214)
Q Consensus 72 ~~~np~v~~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKg 151 (214)
.+.+|.|+.+.= --.+|-++.|.-. |.- +.--|+..=||+ .+|+|||
T Consensus 38 S~F~P~VL~~ME-~~P~WL~Es~~~~---Q~~----------iV~SL~~~~N~~-------------------~~~~L~~ 84 (132)
T d2au5a1 38 SHFSPIVLAEME-KDPNWLEEAAGGM---QGV----------IVQSLLEDENFS-------------------SVEQLKG 84 (132)
T ss_dssp TTCCHHHHHHHH-HCTTHHHHHHHHH---HHH----------HHHHHTTCTTCS-------------------SHHHHHH
T ss_pred ccCCHHHHHHHh-hCchHHHHHHHHh---HHH----------HHHHHhccCCcC-------------------cHHHHHH
Confidence 478898887742 3356877665432 111 112233333443 4789999
Q ss_pred HHHHHHhhhHHHHHHHH
Q 028075 152 RLTEVISNCDALCKRIA 168 (214)
Q Consensus 152 rLteVisncdaLCKRI~ 168 (214)
.++-.|.-|+++.||=-
T Consensus 85 E~~~Li~LY~~~~~~~L 101 (132)
T d2au5a1 85 ELARLIRLYFALAKDNL 101 (132)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998743
No 14
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.91 E-value=14 Score=25.12 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=10.2
Q ss_pred HHHHHHHHHhccc
Q 028075 113 ALATKLLQRFGYS 125 (214)
Q Consensus 113 alA~KLlQR~n~S 125 (214)
.+|.+-|++|+|.
T Consensus 17 e~A~~YL~~fgyl 29 (76)
T d1eaka1 17 ELAVQYLNTFYGC 29 (76)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC
Confidence 4678888899874
No 15
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.30 E-value=12 Score=24.36 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=8.3
Q ss_pred HHHHHHHHhccc
Q 028075 114 LATKLLQRFGYS 125 (214)
Q Consensus 114 lA~KLlQR~n~S 125 (214)
||.+-|++|||-
T Consensus 2 l~~~YL~~fgyl 13 (67)
T d1su3a1 2 LVQKYLEKYYNL 13 (67)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhCCC
Confidence 566777777774
No 16
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=25.79 E-value=34 Score=26.70 Aligned_cols=67 Identities=25% Similarity=0.403 Sum_probs=49.0
Q ss_pred CCCCcceeeeecCccCcchHHHhhhcccc--cCccccCCCCCCCcccceeeccCCCCCCCCCCChHHHHHHHH
Q 028075 14 QRPIDDITTVSYKSESVDPILENIKSLKI--TTPILTSPPPTESSLTDILVRRSSTSSASGTVNPKVLLELFS 84 (214)
Q Consensus 14 q~~~DeITTVse~~e~~DP~LErLkSLkI--a~PiL~spp~~EssLtDILvrk~ssSs~S~~~np~v~~ELfS 84 (214)
-.++|.| +|.+++.....+.+.+.+..- .||.|.-- ...++=.+++-|.-..-...+|...+.|++|
T Consensus 139 ~~~gd~I-~vreksk~~~~i~~~le~~~~~~~P~wLevd---~~~l~g~v~~~P~reei~~~ine~LIVEyYS 207 (208)
T d2uubd1 139 VRPGDEI-AVAEKSRNLELIRQNLEAMKGRKVGPWLSLD---VEGMKGKFLRLPDREDLALPVNEQLVIEFYS 207 (208)
T ss_dssp CCTTCEE-EECGGGTTCHHHHHHHHHHTTCCCCTTEEEE---TTTTEEEECSCCCGGGCCCSCCHHHHHHHHH
T ss_pred ecCCcee-ehhhccchHHHHHHHHHhhccCCCCCCeEee---cccCEEEEEeccCHHHCCCCCCccEEEEecc
Confidence 3567777 477777777777777765432 34555422 3458888999999889889999999999987
No 17
>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.78 E-value=35 Score=24.52 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=13.1
Q ss_pred CCCCCCChHHHHHHHHHh
Q 028075 69 SASGTVNPKVLLELFSMY 86 (214)
Q Consensus 69 s~S~~~np~v~~ELfS~Y 86 (214)
=++.-+|++++-+|+.|.
T Consensus 3 ~p~~~id~~~l~~l~~m~ 20 (166)
T d2r25a1 3 IPSEIINWTILNEIISMD 20 (166)
T ss_dssp CCSCSSCHHHHHHHHHTT
T ss_pred CcccccCHHHHHHHHHHh
Confidence 355678888888887765
No 18
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=25.15 E-value=13 Score=26.82 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHhHHHHHH
Q 028075 75 NPKVLLELFSMYRDWQEE 92 (214)
Q Consensus 75 np~v~~ELfS~YreWQe~ 92 (214)
+++.+.+.+..|++|.++
T Consensus 231 ~~~~i~~~l~~y~~~~~~ 248 (249)
T d1e5da2 231 GADQCTFAVQKYVEYAEQ 248 (249)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 788999999999999985
No 19
>d1ozza_ g.3.7.4 (A:) Defensin ARD1 {Archaeoprepona demophon [TaxId: 191427]}
Probab=25.07 E-value=11 Score=23.92 Aligned_cols=13 Identities=54% Similarity=0.871 Sum_probs=10.3
Q ss_pred HhhhHHHHHHHHh
Q 028075 157 ISNCDALCKRIAA 169 (214)
Q Consensus 157 isncdaLCKRI~~ 169 (214)
-|||+|-|||---
T Consensus 15 ts~cnaeckrrgy 27 (44)
T d1ozza_ 15 TSNCNAECKRRGY 27 (44)
T ss_dssp CSCHHHHHHHHTS
T ss_pred ccccCHHHHhcCC
Confidence 3799999999543
No 20
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.45 E-value=42 Score=22.19 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhccc----hhhhhhhhh--hhccccchhhhHhhhhhHHHHHH
Q 028075 109 EVADALATKLLQRFGYS----VSAMKTSSQ--HLSEVHALQVEIGELKGRLTEVI 157 (214)
Q Consensus 109 E~adalA~KLlQR~n~S----~S~Mktts~--hL~~V~~LqvevgElKgrLteVi 157 (214)
.++|.|-.||-+|=.|+ ++.||++-+ -++++-.||--|.+||+.++-++
T Consensus 3 q~leRlQ~KL~erGD~s~~ekL~~lk~~LqSPLF~qiL~lQ~SiqqLk~Qvn~~~ 57 (58)
T d1vf6a_ 3 QVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLNHIL 57 (58)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47888889999887776 567777644 47888899999999999998764
No 21
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]}
Probab=24.44 E-value=10 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhh
Q 028075 109 EVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVE 145 (214)
Q Consensus 109 E~adalA~KLlQR~n~S~S~Mktts~hL~~V~~Lqve 145 (214)
=+|-|+|.++|..||..+ ..|+.+|+.++.+
T Consensus 142 VaAGaIAk~~L~~~gI~v------~s~v~~IG~i~~~ 172 (397)
T d1q1la_ 142 VAVGAVCKKFLSEFGIKI------GSFVVSIGQKEVE 172 (397)
T ss_dssp HHHHHHHHHHHHTTTCEE------EEEEEEETTEECG
T ss_pred HHHHHHHHHHHHHhCCEE------EEEEEEEccEecc
Confidence 378899999999999865 4588888887654
No 22
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=23.39 E-value=1.1e+02 Score=21.31 Aligned_cols=52 Identities=8% Similarity=0.062 Sum_probs=42.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhhhhh
Q 028075 80 LELFSMYRDWQEEKAKQISKRQEEIENKIEVADALATKLLQRFGYSVSAMKT 131 (214)
Q Consensus 80 ~ELfS~YreWQe~~a~~isk~QeeienkIE~adalA~KLlQR~n~S~S~Mkt 131 (214)
-..+..+.+...+.|++|-++-.+|.+.-.-.+..++++++++...+.-.|.
T Consensus 32 ~~~~~al~~~D~~~a~~v~~~d~~id~l~~~I~~~~~~~l~~~~p~a~dlr~ 83 (215)
T d1t72a_ 32 DKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRM 83 (215)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Confidence 3457778888899999999998888888888899999999988877654443
No 23
>d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage mu [TaxId: 10677]}
Probab=22.96 E-value=18 Score=24.90 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHHHHHHhhhHHHHHHHHhcC
Q 028075 111 ADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEVISNCDALCKRIAAEG 171 (214)
Q Consensus 111 adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLteVisncdaLCKRI~~eG 171 (214)
+..++.++++++|+++..--........+....++.+| +..+.|++..+.+|
T Consensus 108 ~~~Iv~~i~~~~Gl~~~~~~~~~~~~~~~~~~~~q~~E---------Sd~~fl~RLa~~~G 159 (174)
T d1wrua2 108 LEQIARDLCAPYGVTVRWELSDKESSAAFPGFTLDHSE---------TVYEALVRASRARG 159 (174)
T ss_dssp HHHHHHHHHGGGTCCEEECCCCHHHHCCEEEEECCTTC---------BHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCcceeeccccccCCCcceeeeecCC---------cHHHHHHHHHHHCC
Confidence 34456778999999876544444555555566666665 45566666555555
No 24
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]}
Probab=22.95 E-value=28 Score=30.02 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhhhccccchhhhHhhhhhHHHHHHhhhHHHHHHHHhcCCccccc
Q 028075 109 EVADALATKLLQRFGYSVSAMKTSSQHLSEVHALQVEIGELKGRLTEVISNCDALCKRIAAEGPDSLKA 177 (214)
Q Consensus 109 E~adalA~KLlQR~n~S~S~Mktts~hL~~V~~LqvevgElKgrLteVisncdaLCKRI~~eGPesLr~ 177 (214)
.-+-.+|-+|.+..|| +|.|||-|.||++= .+.+..++.+.|...|++.+-.
T Consensus 310 ~~tm~iAQ~LYe~~gl-ITYpRTDS~~ls~~----------------~~~~~~~~~~~~~~~~~~~~~~ 361 (620)
T d1i7da_ 310 QNVLDICQKLYETHKL-ITFPRSDCRYLPEE----------------HFAGRHAVMNAISVHAPDLLPQ 361 (620)
T ss_dssp HHHHHHHHHHHHTSCC-BSCSSCCCCCBCGG----------------GGGGHHHHHHHHHHHSTTTCCC
T ss_pred HHHHHHHHHHHHhcCc-eecccCccccCcHH----------------HHHHHHHHHHHhhccccccccc
Confidence 3344566777765443 79999999999862 2344455666666777776543
No 25
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}
Probab=22.66 E-value=63 Score=24.05 Aligned_cols=31 Identities=3% Similarity=0.036 Sum_probs=21.4
Q ss_pred CCCCCChHHHHHHHHHhHHHHHHHHHHHHHH
Q 028075 70 ASGTVNPKVLLELFSMYRDWQEEKAKQISKR 100 (214)
Q Consensus 70 ~S~~~np~v~~ELfS~YreWQe~~a~~isk~ 100 (214)
..+++-|+...+++..|++...+.|.++..+
T Consensus 206 ~~~n~~p~~~~~i~~~~~~gd~~~A~~l~~~ 236 (295)
T d1hl2a_ 206 STYNIMGWRYQGIVKALKEGDIQTAQKLQTE 236 (295)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhccchhhHHHHHhhhhhhhHHHHHHHHH
Confidence 3456789999888888877655666665433
No 26
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=21.82 E-value=20 Score=25.96 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=24.4
Q ss_pred hhccccchhhhHhhhhhHHHHHHhhhHHHHHHHH
Q 028075 135 HLSEVHALQVEIGELKGRLTEVISNCDALCKRIA 168 (214)
Q Consensus 135 hL~~V~~LqvevgElKgrLteVisncdaLCKRI~ 168 (214)
++-.++....+..+-+|++..+..+|+.||.|-.
T Consensus 158 ~ll~L~~~L~~~l~~~~~l~~~~~e~~~l~~~~~ 191 (193)
T d1yt3a3 158 YLLPITAKLMVETEASGWLPAALDECRLMQMRRQ 191 (193)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhc
Confidence 3444444444445678899999999999999853
No 27
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=21.36 E-value=1.2e+02 Score=20.73 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--HH-HHHHHHHHHHH
Q 028075 75 NPKVLLELFSMYRDWQEEKAKQISKRQEEIE--NK-IEVADALATKL 118 (214)
Q Consensus 75 np~v~~ELfS~YreWQe~~a~~isk~Qeeie--nk-IE~adalA~KL 118 (214)
||.-+.||+.+|-+ +..+.|...++-++ ++ .+.+..+|-+|
T Consensus 38 ~~~fl~eli~~Fl~---~~~~~l~~l~~al~~~~~D~~~~~~~aH~L 81 (142)
T d1yvia1 38 TPGFVSEVVTLFCD---DADRIINEIATLLEQPVVNFDKVDAYVHQL 81 (142)
T ss_dssp CTTHHHHHHHHHHH---HHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88889999999854 44455555555554 22 45566666554
No 28
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=20.29 E-value=97 Score=19.30 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhccchhhhhhh
Q 028075 110 VADALATKLLQRFGYSVSAMKTS 132 (214)
Q Consensus 110 ~adalA~KLlQR~n~S~S~Mktt 132 (214)
+.+| |.+||.+.||..+ |+.-
T Consensus 17 Il~a-a~~l~~~~G~~~t-~~~I 37 (88)
T d1t33a1 17 LIAA-ALAQFGEYGLHAT-TRDI 37 (88)
T ss_dssp HHHH-HHHHHHHHGGGSC-HHHH
T ss_pred HHHH-HHHHHHHhccccC-HHHH
Confidence 4555 8999999999985 5543
Done!