Query 028077
Match_columns 214
No_of_seqs 89 out of 91
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:13:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gb7_A 6-aminohexanoate-dimer 66.7 10 0.00034 33.8 6.0 62 151-213 102-173 (422)
2 3im4_C Dual specificity A kina 49.7 4.8 0.00016 27.0 0.7 12 138-149 9-20 (45)
3 2aj7_A Hypothetical protein BH 22.4 28 0.00096 28.4 1.1 15 47-61 31-45 (163)
4 2jwa_A Receptor tyrosine-prote 19.9 1E+02 0.0036 20.2 3.3 12 60-71 9-20 (44)
5 3i7u_A AP4A hydrolase; nudix p 16.7 79 0.0027 23.2 2.4 22 158-179 5-30 (134)
6 4gdn_A Protein FLP; peptidase, 15.0 3.3E+02 0.011 22.8 6.2 57 156-213 27-101 (342)
7 1jb0_J Photosystem 1 reaction 13.3 1.2E+02 0.004 19.8 2.2 19 64-82 17-35 (41)
8 1wkq_A Guanine deaminase; doma 13.3 1.9E+02 0.0066 22.9 4.1 32 145-177 20-51 (164)
9 2w1r_A Spovt, stage V sporulat 13.3 2.2E+02 0.0074 21.1 4.1 48 150-202 8-61 (123)
10 1g8m_A Aicar transformylase-IM 12.4 2.9E+02 0.0098 27.0 5.6 38 137-175 410-447 (593)
No 1
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=66.66 E-value=10 Score=33.77 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=37.5
Q ss_pred HHHhhhccccEEEEEECCEEEEEeeecC--CCC------CChhHHHHHHHHhccccccccCCcc--cccCCCC
Q 028077 151 YVLLRNTNSISVLISIRGELCVRGYWQT--PDG------ASKTQLLEWFERQIENIGLSDLKDS--LYFPQSA 213 (214)
Q Consensus 151 ~~LLtnT~a~svlV~~~g~~l~RG~l~~--p~d------~~~g~I~~~~~~~~~~~yLanL~~~--~Yfp~~~ 213 (214)
+..|..|.+.++||.++|+++.-.|++. ++. ++|.-.-.-++.-. +.+..||.|+ -|+||..
T Consensus 102 ~~~l~~~~t~a~lV~k~GkIv~E~Y~~~~~~dt~~~i~SvtKs~ta~~i~~lv-e~G~l~ldd~v~~ylPe~~ 173 (422)
T 4gb7_A 102 KELLDDNKTDAFVVVHNGQLVYERYFNGYNESEPHGMASLAKVFTGAIIQSLA-EENRIDLEKTADTYIKELK 173 (422)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEEECTTCCTTSCEECGGGGHHHHHHHHHHHH-HTTSSCTTSBHHHHCGGGT
T ss_pred HHHHHhcCCCEEEEEECCEEEEEeCCCCCCCCCeeeeeeccHHHHHHHHHHHH-HcCCcccCcchhccCcccc
Confidence 4456889999999999999987445543 211 44433322233333 3334478776 4888753
No 2
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=49.66 E-value=4.8 Score=26.97 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=9.1
Q ss_pred ccHHHHHHHHHH
Q 028077 138 ISDALKENLAWA 149 (214)
Q Consensus 138 Lsd~~k~ELAWa 149 (214)
=+|..|+||||-
T Consensus 9 ~~D~aqEEMAWq 20 (45)
T 3im4_C 9 NTDEAQEELAWK 20 (45)
T ss_dssp --CHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 368999999995
No 3
>2aj7_A Hypothetical protein BH3618; BH3618-like fold, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.67A {Bacillus halodurans} SCOP: b.158.1.1
Probab=22.38 E-value=28 Score=28.36 Aligned_cols=15 Identities=33% Similarity=0.835 Sum_probs=13.5
Q ss_pred eeeeecCCCCCCCCC
Q 028077 47 VLRFTFGIPGFDESY 61 (214)
Q Consensus 47 v~Rftlgipg~dd~~ 61 (214)
+++|.-|||||.|-+
T Consensus 31 ii~F~~GIpGFE~~k 45 (163)
T 2aj7_A 31 LIAFDQGIPAFEDEK 45 (163)
T ss_dssp EEECTTCBTTBTTCC
T ss_pred EEEccCCCcCCccce
Confidence 899999999999853
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=19.91 E-value=1e+02 Score=20.19 Aligned_cols=12 Identities=33% Similarity=0.191 Sum_probs=5.7
Q ss_pred CChhHHHHHHHH
Q 028077 60 SYLPRWIGYGFG 71 (214)
Q Consensus 60 ~~LPl~vG~l~~ 71 (214)
+..|.++|+..|
T Consensus 9 ~~~~~Ia~~vVG 20 (44)
T 2jwa_A 9 SPLTSIISAVVG 20 (44)
T ss_dssp CSHHHHHHHHHH
T ss_pred CcccchHHHHHH
Confidence 445544444444
No 5
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=16.67 E-value=79 Score=23.17 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=16.1
Q ss_pred cccEEEEEECCEEEE----EeeecCC
Q 028077 158 NSISVLISIRGELCV----RGYWQTP 179 (214)
Q Consensus 158 ~a~svlV~~~g~~l~----RG~l~~p 179 (214)
.+++.||+.+|++|+ +|.|.-|
T Consensus 5 ~aag~vv~~~~~vLL~~r~~g~W~~P 30 (134)
T 3i7u_A 5 FSAGGVLFKDGEVLLIKTPSNVWSFP 30 (134)
T ss_dssp EEEEEEEEETTEEEEEECTTSCEECC
T ss_pred EEEEEEEEECCEEEEEEeCCCcEECC
Confidence 356778889999853 5777766
No 6
>4gdn_A Protein FLP; peptidase, alpha/beta, hydrolase; HET: PE4; 3.20A {Staphylococcus aureus}
Probab=14.99 E-value=3.3e+02 Score=22.82 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=30.8
Q ss_pred hccccEEEEEECCEEEE---EeeecCC------CC-------CChhHHHHHHHHhccccccccCCccc--ccCCCC
Q 028077 156 NTNSISVLISIRGELCV---RGYWQTP------DG-------ASKTQLLEWFERQIENIGLSDLKDSL--YFPQSA 213 (214)
Q Consensus 156 nT~a~svlV~~~g~~l~---RG~l~~p------~d-------~~~g~I~~~~~~~~~~~yLanL~~~~--Yfp~~~ 213 (214)
..+-.+|+|+.+|+++. .|+.+.. .+ ++|.=. .-+.-+-.+.+..+|.|++ |+|+..
T Consensus 27 ~~pG~sv~V~~~g~~v~~~~~G~ad~~~~~~~~~~T~f~iaSvtK~~T-a~~i~~Lve~G~l~Ldd~v~~ylP~~~ 101 (342)
T 4gdn_A 27 HIPGASILIVKNGKVFLNKGYGYQDVDKKVKASPTTKYEIASNTKAFT-GLAILKLAQEGRLNLNDDVSKHVPHFK 101 (342)
T ss_dssp TCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCEEECGGGGHHHH-HHHHHHHHHHTSSCTTSBGGGTSTTCC
T ss_pred CCCEEEEEEEECCEEEEEEEEEEeccCCCCCCCCCCEEeeeeHHHHHH-HHHHHHHHHcCCcchhheeeecCCccc
Confidence 34566889999999863 4554321 11 344322 2222222233445787764 888753
No 7
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=13.34 E-value=1.2e+02 Score=19.82 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhccC
Q 028077 64 RWIGYGFGSLIVLNHFAFS 82 (214)
Q Consensus 64 l~vG~l~~~llL~Nr~~s~ 82 (214)
+|.+...|.++-+||+.-+
T Consensus 17 ~w~~~tAg~lIEiNRffPD 35 (41)
T 1jb0_J 17 IWMTITAGILIEFNRFYPD 35 (41)
T ss_dssp HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 6899999999999998755
No 8
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=13.33 E-value=1.9e+02 Score=22.92 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhccccEEEEEECCEEEEEeeec
Q 028077 145 NLAWATYVLLRNTNSISVLISIRGELCVRGYWQ 177 (214)
Q Consensus 145 ELAWaS~~LLtnT~a~svlV~~~g~~l~RG~l~ 177 (214)
|+|+.+...-.+.+-.+||| .+|+++.+|+=.
T Consensus 20 ~~A~~a~~~g~~~pVGAVIV-~~g~Ii~~G~N~ 51 (164)
T 1wkq_A 20 TLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNN 51 (164)
T ss_dssp HHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECC
T ss_pred HHHHHHHhcCCCCCEEEEEE-ECCEEEEEEecC
Confidence 44554444322566666666 799999899843
No 9
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=13.27 E-value=2.2e+02 Score=21.11 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=37.7
Q ss_pred HHHHhhhccccEEEEEECCEEEE-Eee-----ecCCCCCChhHHHHHHHHhcccccccc
Q 028077 150 TYVLLRNTNSISVLISIRGELCV-RGY-----WQTPDGASKTQLLEWFERQIENIGLSD 202 (214)
Q Consensus 150 S~~LLtnT~a~svlV~~~g~~l~-RG~-----l~~p~d~~~g~I~~~~~~~~~~~yLan 202 (214)
.+.|...|.+ .|.|.++.++++ -|. .+ .++ +...+.++++++..+.-|
T Consensus 8 AeiI~~~~~~-aV~ItD~~~ilA~~G~g~~~~~~--~~i--s~~~~~~i~~~k~~~~~~ 61 (123)
T 2w1r_A 8 ADALYDSLGH-SVLICDRDVYIAVSGSSKKDYLN--KSI--SEMLERTMDQRSSVLESD 61 (123)
T ss_dssp HHHHHHHHCS-EEEEECSSBEEEEESSCHHHHBT--CBB--CHHHHHHHHHCSCEEESS
T ss_pred HHHHHHHHCC-eEEEEcCccEEEEEecChhhcCC--Ccc--CHHHHHHHHcCCEEEEcC
Confidence 4678889999 999999999987 775 33 234 667999999999877654
No 10
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=12.40 E-value=2.9e+02 Score=27.03 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=33.5
Q ss_pred CccHHHHHHHHHHHHHHhhhccccEEEEEECCEEEEEee
Q 028077 137 NISDALKENLAWATYVLLRNTNSISVLISIRGELCVRGY 175 (214)
Q Consensus 137 ~Lsd~~k~ELAWaS~~LLtnT~a~svlV~~~g~~l~RG~ 175 (214)
.++++..++|..||..+ +.|..-+|++..||+++-.|.
T Consensus 410 ~pt~~e~~DL~fAw~v~-K~vkSNaIv~akdg~tvGiGa 447 (593)
T 1g8m_A 410 TLPESAVRDLIVASIAV-KYTQSNSVCYAKDGQVIGIGA 447 (593)
T ss_dssp CCCHHHHHHHHHHHHHH-HTSCSSCEEEEETTEEEEEEC
T ss_pred CcCHHHHHHHHHHHHHH-HhcCcceEEEEECCeEEEECC
Confidence 69999999999999775 899999999999999986554
Done!